Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102776486
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2328156 characters in sequence are not A, C, G, or T
File 76 of 325
Found at i:26555943 original size:46 final size:46
Alignment explanation
Indices: 26555872--26555966 Score: 163
Period size: 46 Copynumber: 2.1 Consensus size: 46
26555862 ACTTAATAAT
*
26555872 ATTTGATTTATTCTAAATATATATAATCTTTAATGATAATTTTTTA
1 ATTTGATTTATTCTAAATATATATAATCTTTAATGATAATTGTTTA
* *
26555918 ATTTGATTTATTCTAAATATTTATAATCTTTAATTATAATTGTTTA
1 ATTTGATTTATTCTAAATATATATAATCTTTAATGATAATTGTTTA
26555964 ATT
1 ATT
26555967 CAATTCATCA
Statistics
Matches: 46, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
46 46 1.00
ACGTcount: A:0.36, C:0.04, G:0.04, T:0.56
Consensus pattern (46 bp):
ATTTGATTTATTCTAAATATATATAATCTTTAATGATAATTGTTTA
Found at i:26556987 original size:43 final size:43
Alignment explanation
Indices: 26556801--26557001 Score: 244
Period size: 43 Copynumber: 4.7 Consensus size: 43
26556791 TCTGCCAAAA
*
26556801 TTAGCGGCGC-TTTTCCAATAAACGCCACTAAAAGTCAAGGCTT
1 TTAGCGGCGCTTTTTCC-ACAAACGCCACTAAAAGTCAAGGCTT
*
26556844 TTAACGGCG-TTTTTACCACAAACGCCACTAAAAGTCAAGGCTT
1 TTAGCGGCGCTTTTT-CCACAAACGCCACTAAAAGTCAAGGCTT
* *
26556887 TTAGCGGCGCTTTTACCACAAACGCCGCTAAAAGTCAAGGCTT
1 TTAGCGGCGCTTTTTCCACAAACGCCACTAAAAGTCAAGGCTT
* * * ** *
26556930 TCAGCGGCGCTTTTTCCACAAACGCCGCTAAAAGCCTTGACTT
1 TTAGCGGCGCTTTTTCCACAAACGCCACTAAAAGTCAAGGCTT
* * *
26556973 TTAGCGGCGTTTTTTTCAATAAACGCCAC
1 TTAGCGGCG-CTTTTTCCACAAACGCCAC
26557002 AAAGTTTTGT
Statistics
Matches: 138, Mismatches: 16, Indels: 7
0.86 0.10 0.04
Matches are distributed among these distances:
43 117 0.85
44 21 0.15
ACGTcount: A:0.28, C:0.27, G:0.18, T:0.26
Consensus pattern (43 bp):
TTAGCGGCGCTTTTTCCACAAACGCCACTAAAAGTCAAGGCTT
Found at i:26561489 original size:47 final size:46
Alignment explanation
Indices: 26561438--26561527 Score: 135
Period size: 47 Copynumber: 1.9 Consensus size: 46
26561428 AATTATGAGT
*
26561438 CATCCAAACTCGTTGAGTTGCGTTCTGAGTTCACCTATGGATGCAAG
1 CATCCAAACTCGTTGAGTTGCGTTCCGAGTTCA-CTATGGATGCAAG
* * *
26561485 CATCCGAACTCGTTGAGTTGTGTTCCGAGTTCATTATGGATGC
1 CATCCAAACTCGTTGAGTTGCGTTCCGAGTTCACTATGGATGC
26561528 GAACTCCCGA
Statistics
Matches: 39, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
46 9 0.23
47 30 0.77
ACGTcount: A:0.21, C:0.22, G:0.24, T:0.32
Consensus pattern (46 bp):
CATCCAAACTCGTTGAGTTGCGTTCCGAGTTCACTATGGATGCAAG
Found at i:26561546 original size:46 final size:46
Alignment explanation
Indices: 26561438--26561569 Score: 151
Period size: 46 Copynumber: 2.8 Consensus size: 46
26561428 AATTATGAGT
* * * *
26561438 CATCCAAACTCGTTGAGTTGCGTTCTGAGTTCACCTATGGATGCAAG
1 CATCCGAACTCGTTGAGTTGTGTTCCGAGTTCA-TTATGGATGCAAG
26561485 CATCCGAACTCGTTGAGTTGTGTTCCGAGTTCATTATGGATGCGAA-
1 CATCCGAACTCGTTGAGTTGTGTTCCGAGTTCATTATGGATGC-AAG
* * * *
26561531 C-TCCCGAGCTTGTTGAGTCGTGTTTCGAGTTCATTATGG
1 CAT-CCGAACTCGTTGAGTTGTGTTCCGAGTTCATTATGG
26561570 GTGAGATTAT
Statistics
Matches: 75, Mismatches: 8, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
45 1 0.01
46 42 0.56
47 32 0.43
ACGTcount: A:0.20, C:0.21, G:0.26, T:0.33
Consensus pattern (46 bp):
CATCCGAACTCGTTGAGTTGTGTTCCGAGTTCATTATGGATGCAAG
Found at i:26570942 original size:34 final size:33
Alignment explanation
Indices: 26570904--26570976 Score: 137
Period size: 34 Copynumber: 2.2 Consensus size: 33
26570894 TTGAATTAGA
26570904 TAATTTAAAGAAAAGAGAGCAAAAATTGAACCCC
1 TAATTTAAAGAAAAGAGAGCAAAAATTGAA-CCC
26570938 TAATTTAAAGAAAAGAGAGCAAAAATTGAACCC
1 TAATTTAAAGAAAAGAGAGCAAAAATTGAACCC
26570971 TAATTT
1 TAATTT
26570977 GAGAAAGTAA
Statistics
Matches: 39, Mismatches: 0, Indels: 1
0.98 0.00 0.03
Matches are distributed among these distances:
33 9 0.23
34 30 0.77
ACGTcount: A:0.52, C:0.12, G:0.14, T:0.22
Consensus pattern (33 bp):
TAATTTAAAGAAAAGAGAGCAAAAATTGAACCC
Found at i:26572753 original size:23 final size:24
Alignment explanation
Indices: 26572697--26572753 Score: 64
Period size: 23 Copynumber: 2.4 Consensus size: 24
26572687 GATTTTTAAT
*
26572697 TAAATAAAATATTTAAAATTAAGAT
1 TAAATAAAA-ATTTAAAATTAAGAA
* *
26572722 TCAAT-AAAATTTAAATTTAA-AA
1 TAAATAAAAATTTAAAATTAAGAA
26572744 TAAATAAAAA
1 TAAATAAAAA
26572754 ATCATCTCTC
Statistics
Matches: 27, Mismatches: 4, Indels: 4
0.77 0.11 0.11
Matches are distributed among these distances:
22 5 0.19
23 15 0.56
24 3 0.11
25 4 0.15
ACGTcount: A:0.63, C:0.02, G:0.02, T:0.33
Consensus pattern (24 bp):
TAAATAAAAATTTAAAATTAAGAA
Found at i:26578926 original size:6 final size:6
Alignment explanation
Indices: 26578915--26578944 Score: 60
Period size: 6 Copynumber: 5.0 Consensus size: 6
26578905 TTTGACTTCA
26578915 CCAGCC CCAGCC CCAGCC CCAGCC CCAGCC
1 CCAGCC CCAGCC CCAGCC CCAGCC CCAGCC
26578945 TCTGCACACT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 24 1.00
ACGTcount: A:0.17, C:0.67, G:0.17, T:0.00
Consensus pattern (6 bp):
CCAGCC
Found at i:26583467 original size:20 final size:21
Alignment explanation
Indices: 26583433--26583473 Score: 66
Period size: 20 Copynumber: 2.0 Consensus size: 21
26583423 ATTGTTAATA
*
26583433 TAATAAATATATTTATTATTT
1 TAATAAATATATTTAATATTT
26583454 TAATAAAT-TATTTAATATTT
1 TAATAAATATATTTAATATTT
26583474 CAATTTTATT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 11 0.58
21 8 0.42
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (21 bp):
TAATAAATATATTTAATATTT
Found at i:26583574 original size:15 final size:15
Alignment explanation
Indices: 26583554--26583610 Score: 51
Period size: 15 Copynumber: 3.5 Consensus size: 15
26583544 ATTCAATATT
26583554 AATATTTTAATAATA
1 AATATTTTAATAATA
*
26583569 AATATTTATTACAATTATA
1 AATA-TT-TT--AATAATA
*
26583588 AATATATTAATAATA
1 AATATTTTAATAATA
*
26583603 AATGTTTT
1 AATATTTT
26583611 GTAGTATAAA
Statistics
Matches: 33, Mismatches: 5, Indels: 8
0.72 0.11 0.17
Matches are distributed among these distances:
15 16 0.48
16 2 0.06
17 4 0.12
18 1 0.03
19 10 0.30
ACGTcount: A:0.49, C:0.02, G:0.02, T:0.47
Consensus pattern (15 bp):
AATATTTTAATAATA
Found at i:26584851 original size:19 final size:20
Alignment explanation
Indices: 26584827--26584874 Score: 55
Period size: 19 Copynumber: 2.5 Consensus size: 20
26584817 ACTTCATGCT
26584827 ATTTTTATTTA-AATTTTTA
1 ATTTTTATTTATAATTTTTA
* *
26584846 ATTTTT-TATATATTTTTTA
1 ATTTTTATTTATAATTTTTA
26584865 ATTATTTATT
1 ATT-TTTATT
26584875 GATGTGACAT
Statistics
Matches: 23, Mismatches: 3, Indels: 4
0.77 0.10 0.13
Matches are distributed among these distances:
18 3 0.13
19 16 0.70
20 3 0.13
21 1 0.04
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (20 bp):
ATTTTTATTTATAATTTTTA
Found at i:26587743 original size:13 final size:14
Alignment explanation
Indices: 26587707--26587744 Score: 51
Period size: 15 Copynumber: 2.7 Consensus size: 14
26587697 ATATTTTATG
*
26587707 ATATATTTTATATT
1 ATATAGTTTATATT
26587721 ATAATAGTTTATATT
1 AT-ATAGTTTATATT
26587736 AT-TAGTTTA
1 ATATAGTTTA
26587745 CTAAATTAAC
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
13 7 0.32
14 2 0.09
15 13 0.59
ACGTcount: A:0.37, C:0.00, G:0.05, T:0.58
Consensus pattern (14 bp):
ATATAGTTTATATT
Found at i:26604445 original size:21 final size:21
Alignment explanation
Indices: 26604421--26604473 Score: 88
Period size: 21 Copynumber: 2.5 Consensus size: 21
26604411 CATTGTTTCT
*
26604421 AATCTCACCGCTACAGTACCC
1 AATCTCACCGCTACAGTAACC
*
26604442 AATCTCACCGCTACAGTAACT
1 AATCTCACCGCTACAGTAACC
26604463 AATCTCACCGC
1 AATCTCACCGC
26604474 CACCGCTGTT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.30, C:0.40, G:0.09, T:0.21
Consensus pattern (21 bp):
AATCTCACCGCTACAGTAACC
Found at i:26607657 original size:83 final size:81
Alignment explanation
Indices: 26607565--26607784 Score: 274
Period size: 83 Copynumber: 2.7 Consensus size: 81
26607555 GCAGCTACAT
*
26607565 CATCACTACCTAAAAGCTTCACTGATAACCTTTCATGGCGGATTGTCCGAATATATACATACATA
1 CATCACTACCTAAAAGCTTCACTGATAACCTTTCATGGCGGATTTTCC-AATATATACATA-ATA
*
26607630 CATACATATATTATGCTA
64 CATACATATATAATGCTA
* * *
26607648 CATCACTACCTAAAAGCTTCACTAATAACCCTTCATGGCGGATTTTCC--TA-AT--AT-GTACA
1 CATCACTACCTAAAAGCTTCACTGATAACCTTTCATGGCGGATTTTCCAATATATACATAATACA
26607707 TACATATATAATGCTA
66 TACATATATAATGCTA
* * *
26607723 CATCACTACCTAAAAGCTTCTCTTGATAA-CTCTTCATGGAGGATTTTCCTAAAATATACATA
1 CATCACTACCTAAAAGCTTCAC-TGATAACCT-TTCATGGCGGATTTTCC-AATATATACATA
26607785 TCTATTTGGT
Statistics
Matches: 118, Mismatches: 10, Indels: 18
0.81 0.07 0.12
Matches are distributed among these distances:
75 41 0.35
76 21 0.18
77 2 0.02
79 3 0.03
80 4 0.03
82 2 0.02
83 45 0.38
ACGTcount: A:0.35, C:0.23, G:0.10, T:0.32
Consensus pattern (81 bp):
CATCACTACCTAAAAGCTTCACTGATAACCTTTCATGGCGGATTTTCCAATATATACATAATACA
TACATATATAATGCTA
Found at i:26608906 original size:17 final size:19
Alignment explanation
Indices: 26608862--26608908 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
26608852 TAGTTGAACC
26608862 AATTTTCTTTATTTTTTAAA
1 AATTTT-TTTATTTTTTAAA
* *
26608882 AATATTTTTA-TTTTT-AT
1 AATTTTTTTATTTTTTAAA
26608899 AATTTTTTTA
1 AATTTTTTTA
26608909 AACTTATTTA
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
17 10 0.42
18 5 0.21
19 4 0.17
20 5 0.21
ACGTcount: A:0.30, C:0.02, G:0.00, T:0.68
Consensus pattern (19 bp):
AATTTTTTTATTTTTTAAA
Found at i:26615846 original size:15 final size:13
Alignment explanation
Indices: 26615820--26615862 Score: 50
Period size: 13 Copynumber: 3.2 Consensus size: 13
26615810 AAATTAATTC
26615820 TAAAAAAATAAAA
1 TAAAAAAATAAAA
*
26615833 TAAAATAAAGTAAAT
1 TAAAA-AAA-TAAAA
*
26615848 TAAAAAGATAAAA
1 TAAAAAAATAAAA
26615861 TA
1 TA
26615863 GTTTTTCCAT
Statistics
Matches: 25, Mismatches: 3, Indels: 4
0.78 0.09 0.12
Matches are distributed among these distances:
13 11 0.44
14 5 0.20
15 9 0.36
ACGTcount: A:0.74, C:0.00, G:0.05, T:0.21
Consensus pattern (13 bp):
TAAAAAAATAAAA
Found at i:26618332 original size:38 final size:38
Alignment explanation
Indices: 26618281--26618395 Score: 149
Period size: 38 Copynumber: 3.0 Consensus size: 38
26618271 TTTCAAATTA
* * **
26618281 ACATGTATAACCATGGCATATCCATTTAACACCATGTT
1 ACATGTTTAACCATGGTATATCCATTTAACACCACATT
* *
26618319 ACATGTTTAACCATGATATATCCACTTAACACCACATT
1 ACATGTTTAACCATGGTATATCCATTTAACACCACATT
* * *
26618357 ACATGTTTAATCGTGGTATATCCATTTAGCACCACATT
1 ACATGTTTAACCATGGTATATCCATTTAACACCACATT
26618395 A
1 A
26618396 ATGAATTAAT
Statistics
Matches: 66, Mismatches: 11, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
38 66 1.00
ACGTcount: A:0.34, C:0.23, G:0.10, T:0.33
Consensus pattern (38 bp):
ACATGTTTAACCATGGTATATCCATTTAACACCACATT
Found at i:26618473 original size:48 final size:48
Alignment explanation
Indices: 26618359--26618497 Score: 190
Period size: 48 Copynumber: 2.9 Consensus size: 48
26618349 ACCACATTAC
* * * * *
26618359 ATGTTTAATCGTGGTATATCCATTTAGCACCACATTA-ATGAATTAAT
1 ATGTGTAATCGTGGTATATCCACTTAGCACCACGTTACATGTATCAAT
* * *
26618406 ATATGTAACCGTGGCATATCCACTTAGCACCACGTTACATGTATCAAT
1 ATGTGTAATCGTGGTATATCCACTTAGCACCACGTTACATGTATCAAT
*
26618454 ATGTGTAATCGTGGTATATCCACTTAGCACCACGTTACACGTAT
1 ATGTGTAATCGTGGTATATCCACTTAGCACCACGTTACATGTAT
26618498 AACCATGGTA
Statistics
Matches: 79, Mismatches: 12, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
47 31 0.39
48 48 0.61
ACGTcount: A:0.31, C:0.21, G:0.15, T:0.33
Consensus pattern (48 bp):
ATGTGTAATCGTGGTATATCCACTTAGCACCACGTTACATGTATCAAT
Found at i:26621020 original size:21 final size:21
Alignment explanation
Indices: 26620994--26621207 Score: 178
Period size: 21 Copynumber: 10.2 Consensus size: 21
26620984 GTACATCATT
26620994 AACAGAAGCTCATAAGAGCTG
1 AACAGAAGCTCATAAGAGCTG
** *
26621015 AACAGAAGCTTGTAAGAGTTG
1 AACAGAAGCTCATAAGAGCTG
** * *
26621036 AACAGAAGCTTGTAAAAGCTT
1 AACAGAAGCTCATAAGAGCTG
* * *
26621057 AACAGAAACTCATAAGAGTTA
1 AACAGAAGCTCATAAGAGCTG
* *
26621078 AATAGAAGCTCGTAAGAGCTG
1 AACAGAAGCTCATAAGAGCTG
* *
26621099 AACAGAAACTCATAAGAGTTG
1 AACAGAAGCTCATAAGAGCTG
* * *
26621120 AACAGAAGCTCGTCATAGCTG
1 AACAGAAGCTCATAAGAGCTG
* * * * *
26621141 AATAGAAACTTATAAGAGTTT
1 AACAGAAGCTCATAAGAGCTG
* *
26621162 AACAGAAACTCGTAAGAGCTG
1 AACAGAAGCTCATAAGAGCTG
* *
26621183 AACAAAAGCTCGA-AAGAGCTA
1 AACAGAAGCTC-ATAAGAGCTG
26621204 AACA
1 AACA
26621208 TAAAGTAAAA
Statistics
Matches: 149, Mismatches: 43, Indels: 2
0.77 0.22 0.01
Matches are distributed among these distances:
21 149 1.00
ACGTcount: A:0.44, C:0.15, G:0.21, T:0.19
Consensus pattern (21 bp):
AACAGAAGCTCATAAGAGCTG
Found at i:26621200 original size:42 final size:42
Alignment explanation
Indices: 26620994--26621186 Score: 251
Period size: 42 Copynumber: 4.6 Consensus size: 42
26620984 GTACATCATT
* * **
26620994 AACAGAAGCTCATAAGAGCTGAACAGAAGCTTGTAAGAGTTG
1 AACAGAAGCTCGTAAGAGCTGAACAGAAACTCATAAGAGTTG
* * * *
26621036 AACAGAAGCTTGTAAAAGCTTAACAGAAACTCATAAGAGTTA
1 AACAGAAGCTCGTAAGAGCTGAACAGAAACTCATAAGAGTTG
*
26621078 AATAGAAGCTCGTAAGAGCTGAACAGAAACTCATAAGAGTTG
1 AACAGAAGCTCGTAAGAGCTGAACAGAAACTCATAAGAGTTG
* * * * *
26621120 AACAGAAGCTCGTCATAGCTGAATAGAAACTTATAAGAGTTT
1 AACAGAAGCTCGTAAGAGCTGAACAGAAACTCATAAGAGTTG
*
26621162 AACAGAAACTCGTAAGAGCTGAACA
1 AACAGAAGCTCGTAAGAGCTGAACA
26621187 AAAGCTCGAA
Statistics
Matches: 128, Mismatches: 23, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
42 128 1.00
ACGTcount: A:0.44, C:0.15, G:0.21, T:0.20
Consensus pattern (42 bp):
AACAGAAGCTCGTAAGAGCTGAACAGAAACTCATAAGAGTTG
Found at i:26623478 original size:44 final size:44
Alignment explanation
Indices: 26623410--26623514 Score: 138
Period size: 44 Copynumber: 2.4 Consensus size: 44
26623400 ACTCCAGTCC
* * *
26623410 ACTCCACTGTAACTTCAGGGAGATGAGGCTTGTAATTTTAACCT
1 ACTCCACTGCAACTTCAGGAAGATGAGGCTTGTAATTTCAACCT
* * * *
26623454 ACTCCACTACAACTTCAGGAAGATGGGGTTTGTAATTTCGACCT
1 ACTCCACTGCAACTTCAGGAAGATGAGGCTTGTAATTTCAACCT
*
26623498 GCTCCACTGCAACTTCA
1 ACTCCACTGCAACTTCA
26623515 AAGAGATAAG
Statistics
Matches: 52, Mismatches: 9, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
44 52 1.00
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.30
Consensus pattern (44 bp):
ACTCCACTGCAACTTCAGGAAGATGAGGCTTGTAATTTCAACCT
Found at i:26623620 original size:45 final size:44
Alignment explanation
Indices: 26623551--26624034 Score: 180
Period size: 45 Copynumber: 10.6 Consensus size: 44
26623541 TTCAATTTGT
* * *
26623551 TCCACTGAAACTTCAGGAAAATAAGATTTGCTATATTCAGTCTGC
1 TCCACTGCAACTTCAGGGAGATAAGATTTG-TATATTCAGTCTGC
* ** * *
26623596 TCCACTACAACTTCAGGGAGATAAGGCTTGT-T-TTGA-CCTGC
1 TCCACTGCAACTTCAGGGAGATAAGATTTGTATATTCAGTCTGC
* * * * *
26623637 TCTACTGCAACTTCAGAGAGATAGGATCTGTA-ATTGACAGCTTCGATCTGT
1 TCCACTGCAACTTCAGGGAGATAAGATTTGTATATT--CA-----G-TCTGC
* *
26623688 TCTACTGCAACTTCAGGGAAATAAGATTTGCTATATTCAGTCTGC
1 TCCACTGCAACTTCAGGGAGATAAGATTTG-TATATTCAGTCTGC
* * * ** * *
26623733 TCCACTACGACTTCAGAGAGATAAGGCTTGT-T-TTGA-CCTGC
1 TCCACTGCAACTTCAGGGAGATAAGATTTGTATATTCAGTCTGC
* * * * * * *
26623774 TCTACTGCAACTTTAGAGAGATAGGATCTGTAATTTATAGCTTCAATCTGT
1 TCCACTGCAACTTCAGGGAGATAAGA--T-T--TGTATA--TTCAGTCTGC
* *
26623825 TCCACTGTAACTTCAGGGAAATAAGATTTGCTATATTCAGTCTGC
1 TCCACTGCAACTTCAGGGAGATAAGATTTG-TATATTCAGTCTGC
* ** ** * *
26623870 TCTACTGCGGCTTCAGGGAGATAAGGCTTGT-T-TTGA-CCTGC
1 TCCACTGCAACTTCAGGGAGATAAGATTTGTATATTCAGTCTGC
* * * * * * *
26623911 ACTACTGCAACTTTAGAGAGATAGGATCTGTAATTTATAGCTTC-GATCTGT
1 TCCACTGCAACTTCAGGGAGATAAGA--T-T--TGTATA--TTCAG-TCTGC
** * * * *
26623962 TCTGCTGCAACTTCAGGAAAATAAAATTTGCTATCTTCAGTCTGC
1 TCCACTGCAACTTCAGGGAGATAAGATTTG-TATATTCAGTCTGC
*
26624007 TCCACTGCGACTTCAGGGAGATAAGATT
1 TCCACTGCAACTTCAGGGAGATAAGATT
26624035 GATGACTTTA
Statistics
Matches: 312, Mismatches: 90, Indels: 74
0.66 0.19 0.16
Matches are distributed among these distances:
41 75 0.24
42 11 0.04
43 3 0.01
44 6 0.02
45 111 0.36
46 8 0.03
47 9 0.03
48 2 0.01
49 2 0.01
50 5 0.02
51 75 0.24
52 2 0.01
53 3 0.01
ACGTcount: A:0.27, C:0.20, G:0.20, T:0.32
Consensus pattern (44 bp):
TCCACTGCAACTTCAGGGAGATAAGATTTGTATATTCAGTCTGC
Found at i:26623649 original size:41 final size:42
Alignment explanation
Indices: 26623592--26623796 Score: 137
Period size: 41 Copynumber: 4.6 Consensus size: 42
26623582 TATATTCAGT
* * *
26623592 CTGCTCCACTACAACTTCAGGGAGATAAGGCTTGT-TTTGAC
1 CTGCTCTACTGCAACTTCAGAGAGATAAGGCTTGTATTTGAC
* *
26623633 CTGCTCTACTGCAACTTCAGAGAGAT-AGGATCTGTAATTGAC
1 CTGCTCTACTGCAACTTCAGAGAGATAAGGCT-TGTATTTGAC
* * ** * *
26623675 AGCTTCGATCTGTTCTACTGCAACTTCAGGGAAATAAGATTTGCTATATTCAGT
1 --C-T-G--C---TCTACTGCAACTTCAGAGAGATAAGGCTTG-TAT-TTGA-C
* * *
26623729 CTGCTCCACTACGACTTCAGAGAGATAAGGCTTGT-TTTGAC
1 CTGCTCTACTGCAACTTCAGAGAGATAAGGCTTGTATTTGAC
*
26623770 CTGCTCTACTGCAACTTTAGAGAGATA
1 CTGCTCTACTGCAACTTCAGAGAGATA
26623797 GGATCTGTAA
Statistics
Matches: 124, Mismatches: 25, Indels: 30
0.69 0.14 0.17
Matches are distributed among these distances:
40 4 0.03
41 49 0.40
42 8 0.06
43 1 0.01
44 2 0.02
45 24 0.19
46 1 0.01
48 2 0.02
50 1 0.01
51 23 0.19
52 6 0.05
53 3 0.02
ACGTcount: A:0.27, C:0.22, G:0.20, T:0.31
Consensus pattern (42 bp):
CTGCTCTACTGCAACTTCAGAGAGATAAGGCTTGTATTTGAC
Found at i:26623665 original size:137 final size:137
Alignment explanation
Indices: 26623455--26624031 Score: 821
Period size: 137 Copynumber: 4.2 Consensus size: 137
26623445 TTTTAACCTA
* * ** * * *
26623455 CTCCACTACAACTTCAGGAAGATGGGGTTTGTAATTTCGACCTGCTCCACTGCAACTTCAAAGAG
1 CTCCACTACGACTTCAGGGAGATAAGGCTTGT--TTT-GACCTGCTCTACTGCAACTTCAGAGAG
* ** * * *
26623520 ATAAGATCTGCGATTCATAGCTTCAATTTGTTCCACTGAAACTTCAGGAAAATAAGATTTGCTAT
63 ATAGGATCTGTAATTTATAGCTTCAATCTGTTCCACTGCAACTTCAGGAAAATAAGATTTGCTAT
26623585 ATTCAGTCTG
128 ATTCAGTCTG
*
26623595 CTCCACTACAACTTCAGGGAGATAAGGCTTGTTTTGACCTGCTCTACTGCAACTTCAGAGAGATA
1 CTCCACTACGACTTCAGGGAGATAAGGCTTGTTTTGACCTGCTCTACTGCAACTTCAGAGAGATA
* * * * *
26623660 GGATCTGTAATTGACAGCTTCGATCTGTTCTACTGCAACTTCAGGGAAATAAGATTTGCTATATT
66 GGATCTGTAATTTATAGCTTCAATCTGTTCCACTGCAACTTCAGGAAAATAAGATTTGCTATATT
26623725 CAGTCTG
131 CAGTCTG
* *
26623732 CTCCACTACGACTTCAGAGAGATAAGGCTTGTTTTGACCTGCTCTACTGCAACTTTAGAGAGATA
1 CTCCACTACGACTTCAGGGAGATAAGGCTTGTTTTGACCTGCTCTACTGCAACTTCAGAGAGATA
* *
26623797 GGATCTGTAATTTATAGCTTCAATCTGTTCCACTGTAACTTCAGGGAAATAAGATTTGCTATATT
66 GGATCTGTAATTTATAGCTTCAATCTGTTCCACTGCAACTTCAGGAAAATAAGATTTGCTATATT
26623862 CAGTCTG
131 CAGTCTG
* * * * *
26623869 CTCTACTGCGGCTTCAGGGAGATAAGGCTTGTTTTGACCTGCACTACTGCAACTTTAGAGAGATA
1 CTCCACTACGACTTCAGGGAGATAAGGCTTGTTTTGACCTGCTCTACTGCAACTTCAGAGAGATA
* ** * *
26623934 GGATCTGTAATTTATAGCTTCGATCTGTTCTGCTGCAACTTCAGGAAAATAAAATTTGCTATCTT
66 GGATCTGTAATTTATAGCTTCAATCTGTTCCACTGCAACTTCAGGAAAATAAGATTTGCTATATT
26623999 CAGTCTG
131 CAGTCTG
*
26624006 CTCCACTGCGACTTCAGGGAGATAAG
1 CTCCACTACGACTTCAGGGAGATAAG
26624032 ATTGATGACT
Statistics
Matches: 399, Mismatches: 38, Indels: 3
0.91 0.09 0.01
Matches are distributed among these distances:
137 368 0.92
138 3 0.01
140 28 0.07
ACGTcount: A:0.28, C:0.21, G:0.20, T:0.32
Consensus pattern (137 bp):
CTCCACTACGACTTCAGGGAGATAAGGCTTGTTTTGACCTGCTCTACTGCAACTTCAGAGAGATA
GGATCTGTAATTTATAGCTTCAATCTGTTCCACTGCAACTTCAGGAAAATAAGATTTGCTATATT
CAGTCTG
Found at i:26631836 original size:84 final size:83
Alignment explanation
Indices: 26631730--26631896 Score: 194
Period size: 84 Copynumber: 2.0 Consensus size: 83
26631720 GGGCCTGATT
* * * *
26631730 GTAACGGATGGCATTCGCGTGTGTAG-CTCGGGTTGCGTTTGAGCATTCGTCGAGGTGAAACCAT
1 GTAACGGATGGCATTCGCGTGTGT-GTCTCAGGTTGCGTTTAAGCATTCGCCGAGGTAAAACCA-
*
26631794 GAGGGTAGAGAGGATCTTCA
64 GAGGGTAAAGAGGATCTTCA
* * * * *
26631814 GTAACGGATGGC-CTCTGCGTGTGTGTCTTATGTTGCGTTTAAGCATTTGCCGAGGTAAAACTAG
1 GTAACGGATGGCATTC-GCGTGTGTGTCTCAGGTTGCGTTTAAGCATTCGCCGAGGTAAAACCAG
*
26631878 AGGGTAAAGGGGATCTTCA
65 AGGGTAAAGAGGATCTTCA
26631897 TTGTTATTTC
Statistics
Matches: 70, Mismatches: 11, Indels: 5
0.81 0.13 0.06
Matches are distributed among these distances:
83 21 0.30
84 49 0.70
ACGTcount: A:0.22, C:0.16, G:0.34, T:0.28
Consensus pattern (83 bp):
GTAACGGATGGCATTCGCGTGTGTGTCTCAGGTTGCGTTTAAGCATTCGCCGAGGTAAAACCAGA
GGGTAAAGAGGATCTTCA
Found at i:26635655 original size:127 final size:128
Alignment explanation
Indices: 26635518--26635834 Score: 438
Period size: 128 Copynumber: 2.5 Consensus size: 128
26635508 TCCAACAAAA
* * * * **
26635518 AAATCAAAACCCAACATGGTAGGGCACGATTCCTCGAACTTCCAAACATTGAACATTGTCTTGTT
1 AAATCGAAACCCAGCACGGTAGGGCACGATTCCTCGAATTTCCAAACATCAAACATTGTCTTGTT
* * * * *
26635583 TTAGGATTTA-AAGAATGCGAATGAAATTCTAAAGGAATATTTGATTATTTTGAACAAACGAG
66 TTAGAATTTAGAAAAATACGAATGAAATTCTAAAGGAAAATTCGATTATTTTGAACAAACGAG
** * * * *
26635645 AAATCGAAACCCAGCACAATAGGGCACGATTCCCCGAATTTCCAAGCATCAAACGTTGCCTTGTT
1 AAATCGAAACCCAGCACGGTAGGGCACGATTCCTCGAATTTCCAAACATCAAACATTGTCTTGTT
*
26635710 TTAGAATTTAGAAAAATACGAGTGAAATTCTAAAGGAAAATTCGATTATTTTGAACAAACGAG
66 TTAGAATTTAGAAAAATACGAATGAAATTCTAAAGGAAAATTCGATTATTTTGAACAAACGAG
* * *
26635773 AAAACGAAACCCAGCACGGTAGGGCACGATTTCTCAAATTTCCAAACATCAAACATTGTCTT
1 AAATCGAAACCCAGCACGGTAGGGCACGATTCCTCGAATTTCCAAACATCAAACATTGTCTT
26635835 CGTCTTAAGG
Statistics
Matches: 162, Mismatches: 27, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
127 62 0.38
128 100 0.62
ACGTcount: A:0.38, C:0.19, G:0.17, T:0.26
Consensus pattern (128 bp):
AAATCGAAACCCAGCACGGTAGGGCACGATTCCTCGAATTTCCAAACATCAAACATTGTCTTGTT
TTAGAATTTAGAAAAATACGAATGAAATTCTAAAGGAAAATTCGATTATTTTGAACAAACGAG
Found at i:26639656 original size:43 final size:43
Alignment explanation
Indices: 26639608--26639694 Score: 122
Period size: 43 Copynumber: 2.0 Consensus size: 43
26639598 GGCCCTTAAT
*
26639608 CATTTCTTAA-CTACTTAACTATTATAATTAATAACCCAATAAC
1 CATTTCTTAATC-ACTTAACTATTATAATTAACAACCCAATAAC
* * *
26639651 CATTTCTTAATCATTTAATTATTATAATTAACAACTCAATAAC
1 CATTTCTTAATCACTTAACTATTATAATTAACAACCCAATAAC
26639694 C
1 C
26639695 CACTAATAAT
Statistics
Matches: 39, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
43 38 0.97
44 1 0.03
ACGTcount: A:0.41, C:0.20, G:0.00, T:0.39
Consensus pattern (43 bp):
CATTTCTTAATCACTTAACTATTATAATTAACAACCCAATAAC
Found at i:26642552 original size:42 final size:37
Alignment explanation
Indices: 26642505--26642605 Score: 116
Period size: 36 Copynumber: 2.6 Consensus size: 37
26642495 TTCTTTTAGA
*
26642505 TAAATATAAAATATTTAAAATTATAATACATACTTTTAATTT
1 TAAATA-AAAATATAT-AAATTAT-AT--ATACTTTTAATTT
*
26642547 TAAATAAAAA-ATATAGATTATATATACTTTTAATTT
1 TAAATAAAAATATATAAATTATATATACTTTTAATTT
*
26642583 TAAATAAAAA-ATATAGATTATAT
1 TAAATAAAAATATATAAATTATAT
26642606 GAACTTATAA
Statistics
Matches: 57, Mismatches: 2, Indels: 6
0.88 0.03 0.09
Matches are distributed among these distances:
36 36 0.63
38 2 0.04
39 6 0.11
40 3 0.05
41 4 0.07
42 6 0.11
ACGTcount: A:0.52, C:0.03, G:0.02, T:0.43
Consensus pattern (37 bp):
TAAATAAAAATATATAAATTATATATACTTTTAATTT
Found at i:26642581 original size:36 final size:36
Alignment explanation
Indices: 26642534--26642605 Score: 144
Period size: 36 Copynumber: 2.0 Consensus size: 36
26642524 ATTATAATAC
26642534 ATACTTTTAATTTTAAATAAAAAATATAGATTATAT
1 ATACTTTTAATTTTAAATAAAAAATATAGATTATAT
26642570 ATACTTTTAATTTTAAATAAAAAATATAGATTATAT
1 ATACTTTTAATTTTAAATAAAAAATATAGATTATAT
26642606 GAACTTATAA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 36 1.00
ACGTcount: A:0.50, C:0.03, G:0.03, T:0.44
Consensus pattern (36 bp):
ATACTTTTAATTTTAAATAAAAAATATAGATTATAT
Found at i:26643946 original size:124 final size:125
Alignment explanation
Indices: 26643721--26644002 Score: 404
Period size: 124 Copynumber: 2.3 Consensus size: 125
26643711 TTTCAATTAA
26643721 TTATATTTCGAAAATATGATTAAATTTATCACACAAATTTAAAAAATTAAAAATATAAAATTACC
1 TTATATTTCGAAAATATGATTAAATTTATCACACAAATTTAAAAAATTAAAAATATAAAATTACC
* * * *
26643786 ATCATACTATTAAGCACATTAAAAATCGTAATTAAATTTTATTTTAATTAATATTTATCT
66 ATCATACTATTAAGAACATTAAAAATCGCAACTAAATTTTATTTCAATTAATATTTATCT
* * * *
26643846 TTATACTTCGAAAATAGGATTAAATTTATCACACAATTTTAAAAAATT-AAAATGTAAAATTACC
1 TTATATTTCGAAAATATGATTAAATTTATCACACAAATTTAAAAAATTAAAAATATAAAATTACC
* * * * * * *
26643910 ATCTTACTATTAATAATATTAAAAATTGCCACTAAATTTTATTTCCATTAATATTTGTCT
66 ATCATACTATTAAGAACATTAAAAATCGCAACTAAATTTTATTTCAATTAATATTTATCT
* *
26643970 TTATATTTCGAAAATATAATTAAATTTGTCACA
1 TTATATTTCGAAAATATGATTAAATTTATCACA
26644003 ATTTTATATT
Statistics
Matches: 138, Mismatches: 19, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
124 93 0.67
125 45 0.33
ACGTcount: A:0.45, C:0.11, G:0.04, T:0.40
Consensus pattern (125 bp):
TTATATTTCGAAAATATGATTAAATTTATCACACAAATTTAAAAAATTAAAAATATAAAATTACC
ATCATACTATTAAGAACATTAAAAATCGCAACTAAATTTTATTTCAATTAATATTTATCT
Found at i:26645847 original size:6 final size:6
Alignment explanation
Indices: 26645838--26645870 Score: 66
Period size: 6 Copynumber: 5.5 Consensus size: 6
26645828 CTTTTTTTTT
26645838 TGAATA TGAATA TGAATA TGAATA TGAATA TGA
1 TGAATA TGAATA TGAATA TGAATA TGAATA TGA
26645871 TATTTTGGGT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.18, T:0.33
Consensus pattern (6 bp):
TGAATA
Found at i:26660684 original size:57 final size:57
Alignment explanation
Indices: 26660596--26660712 Score: 234
Period size: 57 Copynumber: 2.1 Consensus size: 57
26660586 TTGTCACCCC
26660596 ATTCTCCTTCTCTTTCTTCCCGAAGCCAAACACTAGTCATTACTAAAGCTCTACGAG
1 ATTCTCCTTCTCTTTCTTCCCGAAGCCAAACACTAGTCATTACTAAAGCTCTACGAG
26660653 ATTCTCCTTCTCTTTCTTCCCGAAGCCAAACACTAGTCATTACTAAAGCTCTACGAG
1 ATTCTCCTTCTCTTTCTTCCCGAAGCCAAACACTAGTCATTACTAAAGCTCTACGAG
26660710 ATT
1 ATT
26660713 GTACTCTTAA
Statistics
Matches: 60, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
57 60 1.00
ACGTcount: A:0.26, C:0.31, G:0.10, T:0.32
Consensus pattern (57 bp):
ATTCTCCTTCTCTTTCTTCCCGAAGCCAAACACTAGTCATTACTAAAGCTCTACGAG
Found at i:26661698 original size:28 final size:29
Alignment explanation
Indices: 26661635--26661698 Score: 71
Period size: 28 Copynumber: 2.2 Consensus size: 29
26661625 CATGTTTTTC
*
26661635 TTCTTTTATAAATTTTAAGTCATTTTAGT
1 TTCTTTTATAAAATTTAAGTCATTTTAGT
*
26661664 TT-TTTTTTAAAATTTAATTGTC-TTTTA-T
1 TTCTTTTATAAAATTTAA--GTCATTTTAGT
26661692 TTCTTTT
1 TTCTTTT
26661699 CTTTCAAAAT
Statistics
Matches: 30, Mismatches: 2, Indels: 6
0.79 0.05 0.16
Matches are distributed among these distances:
28 16 0.53
29 11 0.37
30 3 0.10
ACGTcount: A:0.23, C:0.06, G:0.05, T:0.66
Consensus pattern (29 bp):
TTCTTTTATAAAATTTAAGTCATTTTAGT
Found at i:26663029 original size:5 final size:5
Alignment explanation
Indices: 26663019--26663043 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
26663009 TGGGCTTAAA
26663019 ATATT ATATT ATATT ATATT ATATT
1 ATATT ATATT ATATT ATATT ATATT
26663044 TTTTAAGAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (5 bp):
ATATT
Found at i:26671018 original size:16 final size:17
Alignment explanation
Indices: 26670997--26671031 Score: 63
Period size: 16 Copynumber: 2.1 Consensus size: 17
26670987 AAAAATTGTT
26670997 TTACTTTTC-TATATTA
1 TTACTTTTCATATATTA
26671013 TTACTTTTCATATATTA
1 TTACTTTTCATATATTA
26671030 TT
1 TT
26671032 TCATGTATTA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
16 9 0.50
17 9 0.50
ACGTcount: A:0.26, C:0.11, G:0.00, T:0.63
Consensus pattern (17 bp):
TTACTTTTCATATATTA
Found at i:26671078 original size:13 final size:14
Alignment explanation
Indices: 26671060--26671091 Score: 50
Period size: 13 Copynumber: 2.4 Consensus size: 14
26671050 ATATATTTTC
26671060 ATTATTTTATAT-T
1 ATTATTTTATATAT
26671073 ATTA-TTTATATAT
1 ATTATTTTATATAT
26671086 ATTATT
1 ATTATT
26671092 ATCCTTAACT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
12 7 0.41
13 9 0.53
14 1 0.06
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (14 bp):
ATTATTTTATATAT
Found at i:26671141 original size:36 final size:35
Alignment explanation
Indices: 26671101--26671180 Score: 81
Period size: 36 Copynumber: 2.2 Consensus size: 35
26671091 TATCCTTAAC
26671101 TATTATATTTTATTAATCAAT-TACTTATAAACTATA
1 TATTATATTTTA--AATCAATATACTTATAAACTATA
* * * * *
26671137 TATTACGATTTTAAATCCATATACTTTTATATTATA
1 TATTA-TATTTTAAATCAATATACTTATAAACTATA
26671173 TATTATAT
1 TATTATAT
26671181 AATTATTTTA
Statistics
Matches: 36, Mismatches: 6, Indels: 5
0.77 0.13 0.11
Matches are distributed among these distances:
35 8 0.22
36 22 0.61
37 6 0.17
ACGTcount: A:0.39, C:0.09, G:0.01, T:0.51
Consensus pattern (35 bp):
TATTATATTTTAAATCAATATACTTATAAACTATA
Found at i:26683448 original size:206 final size:206
Alignment explanation
Indices: 26683086--26684253 Score: 1672
Period size: 206 Copynumber: 5.7 Consensus size: 206
26683076 ACAGATCTGG
*
26683086 CTGAAGCAAGATCCAAGAT-AGTTTGGTATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGC
1 CTGAAGC-AGATCCAAGATGA-TTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGC
* *
26683150 TGATTTGGCTTTCACGTGCTTACGATGAAGCAAATCTAAGATGATTTGGCATTTCTGTATTGTTA
64 TGATTTGGCTTTCACGTGCTTACGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCA
* * * * *
26683215 GAGAACAAATCGAAGTTTGGCGTCTCCATATTTGACGGAAAGCATG-TACATAGCAGATTTGGTC
129 GAGAACAAATCGAAGTTTGGCGTCTCCATATTCGACGGAGAGCA-GATACATAGCAGATCTAGCC
26683279 TTCAGATGTTTATA
193 TTCAGATGTTTATA
* *
26683293 CTGAAGTAGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCTG
1 CTGAAGCAGATCCAAGATGATTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCTG
* *
26683358 ATTTGGCTTTCACGTG-TTCACGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTACTGTTAG
66 ATTTGGCTTTCACGTGCTT-ACGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAG
* * *
26683422 AGAACAAATCAAATTTTGGCGTCTCCATATTCGATGGAGAGCAGATACATAGCAGATCTAGCCTT
130 AGAACAAATCGAAGTTTGGCGTCTCCATATTCGACGGAGAGCAGATACATAGCAGATCTAGCCTT
26683487 CAGATGTTTATA
195 CAGATGTTTATA
* * * * * *
26683499 CTGAAACAGATCCAAGATGATTTGGCATCTTTGTGTTTACAAGAAACAAATCAAAGACATAGCCG
1 CTGAAGCAGATCCAAGATGATTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCTG
* * * *
26683564 ATTTGGCTTTTACATGTTTGCGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGA
66 ATTTGGCTTTCACGTGCTTACGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGA
* * * * * *
26683629 GAACAAATTGAAGTCT-GCATCTCCATATTCGACGTAGAGCAGACACATAGCAGATCTGGCCTTC
131 GAACAAATCGAAGTTTGGCGTCTCCATATTCGACGGAGAGCAGATACATAGCAGATCTAGCCTTC
* *
26683693 AGATGATTAGA
196 AGATGTTTATA
* *
26683704 CTGAAGCAGATCCAAGATGATTTGGCATCCTTGTGTTTACAAGGAACAAATC-AAAATCATAGCT
1 CTGAAGCAGATCCAAGATGATTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGA-CATAGCT
* * *
26683768 GATTTGGCTTTCACGTGCTTACGGTGAAGCAAATCTAAGATGATTCGGCATCTCTGTATTGTCAA
65 GATTTGGCTTTCACGTGCTTACGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAG
* *
26683833 AGAACAAATCGAAGTTTGGCGTCTCCATATTTGACGGAGAGCAGATACATAGTAGATCTAGCCTT
130 AGAACAAATCGAAGTTTGGCGTCTCCATATTCGACGGAGAGCAGATACATAGCAGATCTAGCCTT
26683898 CAGATGTTTATA
195 CAGATGTTTATA
* * * *
26683910 CTGAAGCAGATCCAATATGATTTGGCATCGTTGTGTTTACAAGGAACAAAACGAAGACATAGCTG
1 CTGAAGCAGATCCAAGATGATTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCTG
* *
26683975 ATTTGGCCTTCACGTGCTTACGATGAAGCAAATCTAAGATGATTTGGCATCTTTGTATTGTCAGA
66 ATTTGGCTTTCACGTGCTTACGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGA
* * * *
26684040 GAACAAATCGAAGTTTTGCGTCTCCATATTCGACGGAGGGCAGACACATAGCAGATCTAACCTTC
131 GAACAAATCGAAGTTTGGCGTCTCCATATTCGACGGAGAGCAGATACATAGCAGATCTAGCCTTC
* *
26684105 AGATGATTAGA
196 AGATGTTTATA
* * * * *
26684116 CTGAAGCAGATCAAATATGGTTTGGTATCCTTGTGCTTACAAGGAGCAAATCGAAGACATAGCTG
1 CTGAAGCAGATCCAAGATGATTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCTG
* * * *
26684181 ATTTGGTTTTCGCGTGCTTACGCTGAAGTAAA--T---ATGATTTGGCATCTCTGTATTGTCAGA
66 ATTTGGCTTTCACGTGCTTACGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGA
26684241 GAACAAATCGAAG
131 GAACAAATCGAAG
26684254 AAGCAGATTT
Statistics
Matches: 865, Mismatches: 89, Indels: 20
0.89 0.09 0.02
Matches are distributed among these distances:
201 39 0.05
204 4 0.00
205 183 0.21
206 628 0.73
207 11 0.01
ACGTcount: A:0.31, C:0.17, G:0.22, T:0.30
Consensus pattern (206 bp):
CTGAAGCAGATCCAAGATGATTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCTG
ATTTGGCTTTCACGTGCTTACGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGA
GAACAAATCGAAGTTTGGCGTCTCCATATTCGACGGAGAGCAGATACATAGCAGATCTAGCCTTC
AGATGTTTATA
Found at i:26683857 original size:411 final size:411
Alignment explanation
Indices: 26683094--26684253 Score: 1717
Period size: 411 Copynumber: 2.8 Consensus size: 411
26683084 GGCTGAAGCA
* *
26683094 AGATCCAAGAT-AGTTTGGTATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCTGATTTGG
1 AGATCCAAGATGA-TTTGGCATCCTTGTGTTTACAAGGAACAAATCGAAGACATAGCTGATTTGG
* *
26683158 CTTTCACGTGCTTACGATGAAGCAAATCTAAGATGATTTGGCATTTCTGTATTGTTAGAGAACAA
65 CTTTCACGTGCTTACGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAA
* * * * *
26683223 ATCGAAGTTTGGCGTCTCCATATTTGACGGAAAGCATG-TACATAGCAGATTTGGTCTTCAGATG
130 ATCGAAGTTT-GCGTCTCCATATTCGACGGAGAGCA-GACACATAGCAGATCTGGCCTTCAGATG
* * *
26683287 TTTATACTGAAGTAGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACA
193 ATTAGACTGAAGCAGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACA
*
26683352 TAGCTGATTTGGCTTTCACGTG-TTCACGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTAC
258 TAGCTGATTTGGCTTTCACGTGCTT-ACGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTAT
* * * *
26683416 TGTTAGAGAACAAATCAAATTTTGGCGTCTCCATATTCGATGGAGAGCAGATACATAGCAGATCT
322 TGTCAGAGAACAAATCGAAGTTTGGCGTCTCCATATTCGACGGAGAGCAGATACATAGCAGATCT
26683481 AGCCTTCAGATGTTTATACTGAAAC
387 AGCCTTCAGATGTTTATACTGAAAC
* * * *
26683506 AGATCCAAGATGATTTGGCATCTTTGTGTTTACAAGAAACAAATCAAAGACATAGCCGATTTGGC
1 AGATCCAAGATGATTTGGCATCCTTGTGTTTACAAGGAACAAATCGAAGACATAGCTGATTTGGC
* * * *
26683571 TTTTACATGTTTGCGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAA
66 TTTCACGTGCTTACGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAA
* * * *
26683636 TTGAAGTCTGCATCTCCATATTCGACGTAGAGCAGACACATAGCAGATCTGGCCTTCAGATGATT
131 TCGAAGTTTGCGTCTCCATATTCGACGGAGAGCAGACACATAGCAGATCTGGCCTTCAGATGATT
* * *
26683701 AGACTGAAGCAGATCCAAGATGATTTGGCATCCTTGTGTTTACAAGGAACAAATC-AAAATCATA
196 AGACTGAAGCAGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGA-CATA
* *
26683765 GCTGATTTGGCTTTCACGTGCTTACGGTGAAGCAAATCTAAGATGATTCGGCATCTCTGTATTGT
260 GCTGATTTGGCTTTCACGTGCTTACGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGT
* * *
26683830 CAAAGAACAAATCGAAGTTTGGCGTCTCCATATTTGACGGAGAGCAGATACATAGTAGATCTAGC
325 CAGAGAACAAATCGAAGTTTGGCGTCTCCATATTCGACGGAGAGCAGATACATAGCAGATCTAGC
*
26683895 CTTCAGATGTTTATACTGAAGC
390 CTTCAGATGTTTATACTGAAAC
* * *
26683917 AGATCCAATATGATTTGGCATCGTTGTGTTTACAAGGAACAAAACGAAGACATAGCTGATTTGGC
1 AGATCCAAGATGATTTGGCATCCTTGTGTTTACAAGGAACAAATCGAAGACATAGCTGATTTGGC
* *
26683982 CTTCACGTGCTTACGATGAAGCAAATCTAAGATGATTTGGCATCTTTGTATTGTCAGAGAACAAA
66 TTTCACGTGCTTACGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAA
* **
26684047 TCGAAGTTTTGCGTCTCCATATTCGACGGAGGGCAGACACATAGCAGATCTAACCTTCAGATGAT
131 TCGAAG-TTTGCGTCTCCATATTCGACGGAGAGCAGACACATAGCAGATCTGGCCTTCAGATGAT
* * * *
26684112 TAGACTGAAGCAGATCAAATATGGTTTGGTATCCTTGTGCTTACAAGGAGCAAATCGAAGACATA
195 TAGACTGAAGCAGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATA
* * * *
26684177 GCTGATTTGGTTTTCGCGTGCTTACGCTGAAGTAAA--T---ATGATTTGGCATCTCTGTATTGT
260 GCTGATTTGGCTTTCACGTGCTTACGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGT
26684237 CAGAGAACAAATCGAAG
325 CAGAGAACAAATCGAAG
26684254 AAGCAGATTT
Statistics
Matches: 672, Mismatches: 70, Indels: 17
0.89 0.09 0.02
Matches are distributed among these distances:
407 38 0.06
410 5 0.01
411 362 0.54
412 263 0.39
413 4 0.01
ACGTcount: A:0.31, C:0.17, G:0.22, T:0.30
Consensus pattern (411 bp):
AGATCCAAGATGATTTGGCATCCTTGTGTTTACAAGGAACAAATCGAAGACATAGCTGATTTGGC
TTTCACGTGCTTACGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAA
TCGAAGTTTGCGTCTCCATATTCGACGGAGAGCAGACACATAGCAGATCTGGCCTTCAGATGATT
AGACTGAAGCAGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAG
CTGATTTGGCTTTCACGTGCTTACGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTC
AGAGAACAAATCGAAGTTTGGCGTCTCCATATTCGACGGAGAGCAGATACATAGCAGATCTAGCC
TTCAGATGTTTATACTGAAAC
Found at i:26686078 original size:16 final size:17
Alignment explanation
Indices: 26686057--26686091 Score: 63
Period size: 16 Copynumber: 2.1 Consensus size: 17
26686047 AAAAATTGTT
26686057 TTACTTTTC-TATATTA
1 TTACTTTTCATATATTA
26686073 TTACTTTTCATATATTA
1 TTACTTTTCATATATTA
26686090 TT
1 TT
26686092 TCATGTATTA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
16 9 0.50
17 9 0.50
ACGTcount: A:0.26, C:0.11, G:0.00, T:0.63
Consensus pattern (17 bp):
TTACTTTTCATATATTA
Found at i:26686223 original size:36 final size:35
Alignment explanation
Indices: 26686162--26686241 Score: 99
Period size: 36 Copynumber: 2.2 Consensus size: 35
26686152 TATCCTTAAC
26686162 TATTATATTTTATTAATCAATTACTTATATACTATA
1 TATTATATTTTA-TAATCAATTACTTATATACTATA
* * *
26686198 TATTACTATTTTA-AATCCATATACTTTTATATTATA
1 TATTA-TATTTTATAATCAAT-TACTTATATACTATA
26686234 TATTATAT
1 TATTATAT
26686242 AATTATTTTA
Statistics
Matches: 39, Mismatches: 3, Indels: 5
0.83 0.06 0.11
Matches are distributed among these distances:
35 9 0.23
36 23 0.59
37 7 0.18
ACGTcount: A:0.38, C:0.09, G:0.00, T:0.54
Consensus pattern (35 bp):
TATTATATTTTATAATCAATTACTTATATACTATA
Found at i:26695653 original size:18 final size:18
Alignment explanation
Indices: 26695632--26695691 Score: 56
Period size: 18 Copynumber: 3.5 Consensus size: 18
26695622 AATAAATTAT
*
26695632 TAATTATATATATTTTTA
1 TAATTAAATATATTTTTA
* *
26695650 TAATTAAATTTATTTTTT
1 TAATTAAATATATTTTTA
26695668 TAA--AAATA-ATTATTTA
1 TAATTAAATATATT-TTTA
26695684 -AATTAAAT
1 TAATTAAAT
26695692 TCGGGTTAAG
Statistics
Matches: 34, Mismatches: 5, Indels: 7
0.74 0.11 0.15
Matches are distributed among these distances:
15 5 0.15
16 7 0.21
17 4 0.12
18 18 0.53
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (18 bp):
TAATTAAATATATTTTTA
Found at i:26696122 original size:24 final size:25
Alignment explanation
Indices: 26696085--26696140 Score: 78
Period size: 24 Copynumber: 2.3 Consensus size: 25
26696075 ATGGACCAAC
* *
26696085 TTTTAACAATAAAAATGAATGTACT
1 TTTTAATAATAAAAATAAATGTACT
*
26696110 TTTTAATAA-AAAAATAAATTTACT
1 TTTTAATAATAAAAATAAATGTACT
26696134 TTTTAAT
1 TTTTAAT
26696141 CTAACATATA
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
24 20 0.71
25 8 0.29
ACGTcount: A:0.48, C:0.05, G:0.04, T:0.43
Consensus pattern (25 bp):
TTTTAATAATAAAAATAAATGTACT
Found at i:26699390 original size:3 final size:3
Alignment explanation
Indices: 26699382--26699407 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
26699372 AATTTGGGAA
26699382 GAT GAT GAT GAT GAT GAT GAT GAT GA
1 GAT GAT GAT GAT GAT GAT GAT GAT GA
26699408 ATTTTGTAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.35, C:0.00, G:0.35, T:0.31
Consensus pattern (3 bp):
GAT
Found at i:26704777 original size:22 final size:20
Alignment explanation
Indices: 26704739--26704778 Score: 62
Period size: 22 Copynumber: 1.9 Consensus size: 20
26704729 TCTTTACATA
26704739 AAAACAATATATTAATGTCG
1 AAAACAATATATTAATGTCG
26704759 AAAACATATATAATTAATGT
1 AAAACA-ATAT-ATTAATGT
26704779 ATCTAAATTT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 6 0.33
21 4 0.22
22 8 0.44
ACGTcount: A:0.53, C:0.07, G:0.07, T:0.33
Consensus pattern (20 bp):
AAAACAATATATTAATGTCG
Found at i:26704892 original size:29 final size:30
Alignment explanation
Indices: 26704850--26704906 Score: 82
Period size: 29 Copynumber: 1.9 Consensus size: 30
26704840 TTGTTTTCAT
*
26704850 GTGTAATTTAATACAT-AAACTTTGATTTA
1 GTGTAATTTAATACATAAAACTTGGATTTA
26704879 GTGTAA-TTATATACATAAAACTTGGATT
1 GTGTAATTTA-ATACATAAAACTTGGATT
26704907 ACGATTTATA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
28 3 0.12
29 12 0.48
30 10 0.40
ACGTcount: A:0.39, C:0.07, G:0.12, T:0.42
Consensus pattern (30 bp):
GTGTAATTTAATACATAAAACTTGGATTTA
Found at i:26706010 original size:29 final size:30
Alignment explanation
Indices: 26705952--26706031 Score: 81
Period size: 31 Copynumber: 2.6 Consensus size: 30
26705942 AAATTTAATC
*
26705952 AAATCAAAATTTAATATATAAAATCACACA-
1 AAATCAAAATTT-ATGTATAAAATCACACAT
* **
26705982 AAATCAAAATTTATGTATAACATTGCACATT
1 AAATCAAAATTTATGTATAAAATCACACA-T
* *
26706013 AAATCAAAGTTCATGTATA
1 AAATCAAAATTTATGTATA
26706032 GTTTAATATT
Statistics
Matches: 42, Mismatches: 6, Indels: 3
0.82 0.12 0.06
Matches are distributed among these distances:
29 13 0.31
30 12 0.29
31 17 0.40
ACGTcount: A:0.51, C:0.12, G:0.05, T:0.31
Consensus pattern (30 bp):
AAATCAAAATTTATGTATAAAATCACACAT
Found at i:26712960 original size:30 final size:29
Alignment explanation
Indices: 26712924--26712984 Score: 113
Period size: 30 Copynumber: 2.1 Consensus size: 29
26712914 AGTTGGAAGT
26712924 TTTGGCACTAAGTGTGCGATTTAAACTAGC
1 TTTGGCACTAAGTGTGCGATTT-AACTAGC
26712954 TTTGGCACTAAGTGTGCGATTTAACTAGC
1 TTTGGCACTAAGTGTGCGATTTAACTAGC
26712983 TT
1 TT
26712985 CGGCTACTTG
Statistics
Matches: 31, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
29 9 0.29
30 22 0.71
ACGTcount: A:0.25, C:0.16, G:0.23, T:0.36
Consensus pattern (29 bp):
TTTGGCACTAAGTGTGCGATTTAACTAGC
Found at i:26720288 original size:22 final size:22
Alignment explanation
Indices: 26720259--26720326 Score: 75
Period size: 22 Copynumber: 3.0 Consensus size: 22
26720249 TGCACAAACG
26720259 AACAGAGAGCACTAAAGTGCTA
1 AACAGAGAGCACTAAAGTGCTA
* *
26720281 TACAGAGAGCAC-AGATGTGCTA
1 AACAGAGAGCACTA-AAGTGCTA
* *
26720303 AACAGGGAGCACTTAACGTGCTA
1 AACAGAGAGCAC-TAAAGTGCTA
26720326 A
1 A
26720327 TAATAGTACA
Statistics
Matches: 38, Mismatches: 5, Indels: 5
0.79 0.10 0.10
Matches are distributed among these distances:
21 1 0.03
22 28 0.74
23 8 0.21
24 1 0.03
ACGTcount: A:0.40, C:0.19, G:0.25, T:0.16
Consensus pattern (22 bp):
AACAGAGAGCACTAAAGTGCTA
Found at i:26721501 original size:7 final size:7
Alignment explanation
Indices: 26721491--26721584 Score: 60
Period size: 7 Copynumber: 14.3 Consensus size: 7
26721481 TTCTTATGTT
26721491 TTATATA
1 TTATATA
26721498 TTATATA
1 TTATATA
26721505 -TA-ATA
1 TTATATA
*
26721510 TAATATA
1 TTATATA
*
26721517 ATATA-A
1 TTATATA
26721523 TTATATA
1 TTATATA
26721530 --ATATA
1 TTATATA
26721535 TTATATA
1 TTATATA
26721542 TTA-ATA
1 TTATATA
*
26721548 CTTAAATA
1 -TTATATA
26721556 TTA-AGT-
1 TTATA-TA
*
26721562 TAATATA
1 TTATATA
*
26721569 ATATATA
1 TTATATA
*
26721576 ATATATA
1 TTATATA
26721583 TT
1 TT
26721585 TTTATATAAA
Statistics
Matches: 69, Mismatches: 8, Indels: 20
0.71 0.08 0.21
Matches are distributed among these distances:
5 8 0.12
6 15 0.22
7 43 0.62
8 3 0.04
ACGTcount: A:0.50, C:0.01, G:0.01, T:0.48
Consensus pattern (7 bp):
TTATATA
Found at i:26721510 original size:5 final size:5
Alignment explanation
Indices: 26721493--26721539 Score: 55
Period size: 5 Copynumber: 10.0 Consensus size: 5
26721483 CTTATGTTTT
* *
26721493 ATATA TTAT- ATATA ATATA ATATA ATATA AT-T- ATATA ATATA TTATA
1 ATATA ATATA ATATA ATATA ATATA ATATA ATATA ATATA ATATA ATATA
26721540 TATTAATACT
Statistics
Matches: 36, Mismatches: 3, Indels: 6
0.80 0.07 0.13
Matches are distributed among these distances:
3 2 0.06
4 5 0.14
5 29 0.81
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (5 bp):
ATATA
Found at i:26721531 original size:23 final size:22
Alignment explanation
Indices: 26721495--26721580 Score: 79
Period size: 23 Copynumber: 3.8 Consensus size: 22
26721485 TATGTTTTAT
*
26721495 ATATTATATATAATATAATATA
1 ATATAATATATAATATAATATA
*
26721517 ATATAATTATATAATATATTAT-
1 ATATAA-TATATAATATAATATA
26721539 ATATTAATACT-TAAATATTAAGT-TA
1 ATA-TAATA-TAT-AATA-TAA-TATA
26721564 ATATAATATATAATATA
1 ATATAATATATAATATA
26721581 TATTTTTATA
Statistics
Matches: 53, Mismatches: 3, Indels: 16
0.74 0.04 0.22
Matches are distributed among these distances:
22 13 0.25
23 27 0.51
24 9 0.17
25 4 0.08
ACGTcount: A:0.52, C:0.01, G:0.01, T:0.45
Consensus pattern (22 bp):
ATATAATATATAATATAATATA
Found at i:26721568 original size:39 final size:38
Alignment explanation
Indices: 26721493--26721581 Score: 105
Period size: 39 Copynumber: 2.3 Consensus size: 38
26721483 CTTATGTTTT
26721493 ATATATTATATA-TAATATAATATAATATAATTATATA
1 ATATATTATATATTAATATAATATAATATAATTATATA
26721530 ATATATTATATATTAATACT--TA-AATATTAAGTTAATATA
1 ATATATTATATATTAATA-TAATATAATA-TAA-TT-ATATA
*
26721569 ATATATAATATAT
1 ATATATTATATAT
26721582 ATTTTTATAT
Statistics
Matches: 46, Mismatches: 1, Indels: 8
0.84 0.02 0.15
Matches are distributed among these distances:
36 4 0.09
37 17 0.37
38 7 0.15
39 18 0.39
ACGTcount: A:0.52, C:0.01, G:0.01, T:0.46
Consensus pattern (38 bp):
ATATATTATATATTAATATAATATAATATAATTATATA
Found at i:26727634 original size:22 final size:22
Alignment explanation
Indices: 26727605--26727672 Score: 75
Period size: 22 Copynumber: 3.0 Consensus size: 22
26727595 TGCACAAACG
26727605 AACAGAGAGCACTAAAGTGCTA
1 AACAGAGAGCACTAAAGTGCTA
* *
26727627 TACAGAGAGCAC-AGATGTGCTA
1 AACAGAGAGCACTA-AAGTGCTA
* *
26727649 AACAGGGAGCACTTAACGTGCTA
1 AACAGAGAGCAC-TAAAGTGCTA
26727672 A
1 A
26727673 TAATAGTACA
Statistics
Matches: 38, Mismatches: 5, Indels: 5
0.79 0.10 0.10
Matches are distributed among these distances:
21 1 0.03
22 28 0.74
23 8 0.21
24 1 0.03
ACGTcount: A:0.40, C:0.19, G:0.25, T:0.16
Consensus pattern (22 bp):
AACAGAGAGCACTAAAGTGCTA
Found at i:26728851 original size:7 final size:7
Alignment explanation
Indices: 26728848--26728928 Score: 51
Period size: 7 Copynumber: 10.7 Consensus size: 7
26728838 ATTATATATA
26728848 ATATAAT
1 ATATAAT
26728855 ATA-ATAT
1 ATATA-AT
26728862 AATATAAT
1 -ATATAAT
26728870 AATATAAT
1 -ATATAAT
*
26728878 ATATTAT
1 ATATAAT
26728885 ATATTAAT
1 ATA-TAAT
26728893 ACT-TAA-
1 A-TATAAT
26728899 ATATTAAGTT
1 ATA-TAA--T
26728909 AATATAAT
1 -ATATAAT
26728917 ATATAAT
1 ATATAAT
26728924 ATATA
1 ATATA
26728929 TTTTTATATA
Statistics
Matches: 61, Mismatches: 2, Indels: 22
0.72 0.02 0.26
Matches are distributed among these distances:
5 1 0.02
6 2 0.03
7 32 0.52
8 18 0.30
9 2 0.03
10 3 0.05
11 3 0.05
ACGTcount: A:0.54, C:0.01, G:0.01, T:0.43
Consensus pattern (7 bp):
ATATAAT
Found at i:26728853 original size:5 final size:5
Alignment explanation
Indices: 26728843--26728885 Score: 63
Period size: 5 Copynumber: 9.0 Consensus size: 5
26728833 TTATTATTAT
*
26728843 ATATA ATATA ATATA ATATA ATAT- A-ATA ATATA ATATA TTATA
1 ATATA ATATA ATATA ATATA ATATA ATATA ATATA ATATA ATATA
26728886 TATTAATACT
Statistics
Matches: 35, Mismatches: 1, Indels: 4
0.88 0.03 0.10
Matches are distributed among these distances:
3 2 0.06
4 2 0.06
5 31 0.89
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (5 bp):
ATATA
Found at i:26728863 original size:15 final size:15
Alignment explanation
Indices: 26728843--26728885 Score: 63
Period size: 13 Copynumber: 3.0 Consensus size: 15
26728833 TTATTATTAT
26728843 ATATAATATAATATA
1 ATATAATATAATATA
26728858 ATATAATAT-A-ATA
1 ATATAATATAATATA
*
26728871 ATATAATATATTATA
1 ATATAATATAATATA
26728886 TATTAATACT
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
13 12 0.48
14 1 0.04
15 12 0.48
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (15 bp):
ATATAATATAATATA
Found at i:26728892 original size:15 final size:14
Alignment explanation
Indices: 26728840--26728929 Score: 84
Period size: 15 Copynumber: 6.5 Consensus size: 14
26728830 GTTTTATTAT
26728840 TATATATAATATAA
1 TATATATAATATAA
26728854 TATAATATAATATAA
1 TAT-ATATAATATAA
*
26728869 TA-ATATAATATAT
1 TATATATAATATAA
26728882 TATATATTAATACTTAA
1 TATATA-TAATA--TAA
26728899 -ATAT-TAAGT-TAA
1 TATATATAA-TATAA
26728911 TATA-AT-ATATAA
1 TATATATAATATAA
26728923 TATATAT
1 TATATAT
26728930 TTTTATATAA
Statistics
Matches: 64, Mismatches: 2, Indels: 21
0.74 0.02 0.24
Matches are distributed among these distances:
11 1 0.02
12 11 0.17
13 18 0.28
14 9 0.14
15 19 0.30
16 4 0.06
17 2 0.03
ACGTcount: A:0.53, C:0.01, G:0.01, T:0.44
Consensus pattern (14 bp):
TATATATAATATAA
Found at i:26734003 original size:43 final size:42
Alignment explanation
Indices: 26733912--26734063 Score: 146
Period size: 43 Copynumber: 3.6 Consensus size: 42
26733902 ACTGGCACGA
* * *
26733912 AGCCTGCTAGACTTTAAGTCTGA-ACTCA-TTCACCGGCATTT
1 AGCCTGCTAGGCTTGAAGCCTGATA-TCATTTCACCGGCATTT
* *
26733953 CGCCTGCTAGGCTTGAAGCCTGATATCATTTCACCGCCATTGT
1 AGCCTGCTAGGCTTGAAGCCTGATATCATTTCACCGGCATT-T
** * * * *
26733996 AGCCTGCTAGGCCCGAAGCCTAATATTATCTCATCGGCATTAT
1 AGCCTGCTAGGCTTGAAGCCTGATATCATTTCACCGGCATT-T
* *
26734039 AGCCTGCTAGGCTGGAAGCCCGATA
1 AGCCTGCTAGGCTTGAAGCCTGATA
26734064 ATATTATTCA
Statistics
Matches: 90, Mismatches: 18, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
41 22 0.24
42 12 0.13
43 56 0.62
ACGTcount: A:0.23, C:0.28, G:0.21, T:0.28
Consensus pattern (42 bp):
AGCCTGCTAGGCTTGAAGCCTGATATCATTTCACCGGCATTT
Found at i:26740964 original size:388 final size:390
Alignment explanation
Indices: 26740220--26741002 Score: 1453
Period size: 388 Copynumber: 2.0 Consensus size: 390
26740210 CACCCAGGTT
*
26740220 AGTATCGGAAATTCAGAGTTTCCTAGGGTTGGCAGGTTACTATAGAAGGTTTGTGGAGGGTTTCT
1 AGTATCGGAAATTCAGAGTTTCCTAGGGTTGGCAGGTTACTACAGAAGGTTTGTGGAGGGTTTCT
26740285 CAGTAATGGCGGCACCCTTGACAAAACTCATAAGGAAAGGAGTACCAATTGTCTGGACCGAGAAA
66 CAGTAATGGCGGCACCCTTGACAAAACTCATAAGGAAAGGAGTACCAATTGTCTGGACCGAGAAA
*
26740350 CAGCAAAAAGCTTTTGATCGGTTGAAAAAGATATTGACCGAAGCGCCAGTGTTGATTCAACCGGT
131 CAGCAAAAAGCTTTTGATCGGTTGAAAAAGATATTGACCGAAGCGCCA--GTTGATTCAACCGAT
*
26740415 GTCTGGGAAGGACTTTACTGTATACAGCGATGCATCGCATGTGGGGTTAGGTTGCGTACTGATGC
194 GTCTGGGAAGGACTTTACTGTATACAGCGATGCATCACATGTGGGGTTAGGTTGCGTACTGATGC
*
26740480 AAGAGGGCAAGGTGGTTGCTTATGCATCGTGACAGCTTAAGGCTCATGAGGTGAATTACCCTACG
259 AAGAGGGCAAGGTGGTCGCTTATGCATCGTGACAGCTTAAGGCTCATGAGGTGAATTACCCTACG
*
26740545 CATGATTTGGACCTAGCAGTGGTGATTTTTGCGTTAAAAATTTGGAGACACTACTTATATGGGGA
324 CATGATTTGGACCTAGCAGTGGTGATTTTTGCATTAAAAATTTGGAGACACTACTTATATGGGGA
26740610 AA
389 AA
*
26740612 AGTATCGGAAATTCGGAGTTTCCTAGGGTTGGCAGGTTACTACAGAAGGTTTGTGGAGGGTTTCT
1 AGTATCGGAAATTCAGAGTTTCCTAGGGTTGGCAGGTTACTACAGAAGGTTTGTGGAGGGTTTCT
*
26740677 CGGTAATGGCGGCACCCTTGACAAAACTCATAAGGAAAGGAGTACCAATTGTCTGGACCGAGAAA
66 CAGTAATGGCGGCACCCTTGACAAAACTCATAAGGAAAGGAGTACCAATTGTCTGGACCGAGAAA
*
26740742 CAGCAAAAAGCTTTTGATCGGTTGAAAAAGGTATTGACCGAAGCG-CA-TTGATTCAACCGATGT
131 CAGCAAAAAGCTTTTGATCGGTTGAAAAAGATATTGACCGAAGCGCCAGTTGATTCAACCGATGT
26740805 CTGGGAAGGACTTTACTGTATACAGCGATGCATCACATGTGGGGTTAGGTTGCGTACTGATGCAA
196 CTGGGAAGGACTTTACTGTATACAGCGATGCATCACATGTGGGGTTAGGTTGCGTACTGATGCAA
*
26740870 GAGGGCAAGGTGGTCGCTTATGCATCGTGACAGCTTAAGGCTCATGAGGTGAATTACCCTATGCA
261 GAGGGCAAGGTGGTCGCTTATGCATCGTGACAGCTTAAGGCTCATGAGGTGAATTACCCTACGCA
26740935 TGATTTGGACCTAGCAGTGGTGATTTTTGCATTAAAAATTTGGAGACACTACTTATATGGGGAAA
326 TGATTTGGACCTAGCAGTGGTGATTTTTGCATTAAAAATTTGGAGACACTACTTATATGGGGAAA
26741000 AGT
1 AGT
26741003 GTATCATATA
Statistics
Matches: 382, Mismatches: 9, Indels: 4
0.97 0.02 0.01
Matches are distributed among these distances:
388 209 0.55
391 2 0.01
392 171 0.45
ACGTcount: A:0.28, C:0.16, G:0.28, T:0.27
Consensus pattern (390 bp):
AGTATCGGAAATTCAGAGTTTCCTAGGGTTGGCAGGTTACTACAGAAGGTTTGTGGAGGGTTTCT
CAGTAATGGCGGCACCCTTGACAAAACTCATAAGGAAAGGAGTACCAATTGTCTGGACCGAGAAA
CAGCAAAAAGCTTTTGATCGGTTGAAAAAGATATTGACCGAAGCGCCAGTTGATTCAACCGATGT
CTGGGAAGGACTTTACTGTATACAGCGATGCATCACATGTGGGGTTAGGTTGCGTACTGATGCAA
GAGGGCAAGGTGGTCGCTTATGCATCGTGACAGCTTAAGGCTCATGAGGTGAATTACCCTACGCA
TGATTTGGACCTAGCAGTGGTGATTTTTGCATTAAAAATTTGGAGACACTACTTATATGGGGAAA
Found at i:26748420 original size:314 final size:314
Alignment explanation
Indices: 26747851--26748479 Score: 1114
Period size: 314 Copynumber: 2.0 Consensus size: 314
26747841 GGCTGCCTCG
*
26747851 CCTTAGTCTGTCCAGCACCTATACCCGGTGCTCTCTGTCTACAGCCCATACTGTTACCACCCCTA
1 CCTTAGTCTGTCCAGCACCTATACCCGGTGCTCTCTGCCTACAGCCCATACTGTTACCACCCCTA
*
26747916 GCATGACCACGGCTCCTAGATGGCTGCAAAACTACCCTCGGTGGCTGTGCAGTACTAGAACTCGG
66 GCATGACCACGGCTCCTAGATGGCTGCAAAACTACCCTCGGTGGCTGTGCAGTACTAAAACTCGG
* *
26747981 AGCTTGTATTTGATCGGCCCTTAGCGGATACTCATGAATGCTGTGCTCAGTAGACCCACATCTTA
131 AGCTTGTATTTGATCGACCCTCAGCGGATACTCATGAATGCTGTGCTCAGTAGACCCACATCTTA
* * *
26748046 AGTATATCACAGTCATCCTCTGACATTCACCTGGATGACATCTACCACAATGCTCACAAGGCAAG
196 AGCATATCACAGTCATCCTCTAACATTCACCTGGATGACATCTACCACAATGCCCACAAGGCAAG
* *
26748111 TTCCCAGTAAGTACAACAGGAGGCCCAACTTTAACTGGGTTCATCAGATTTGAC
261 TTCCCAGTAAGTACAACAGGAGGCCCAACTTTAACTAGGCTCATCAGATTTGAC
* *
26748165 CCTTAGTCTGTCCAGCACCTCTACCCGGTGCTCTCTGCCTACAGCCCATATTGTTACCACCCCTA
1 CCTTAGTCTGTCCAGCACCTATACCCGGTGCTCTCTGCCTACAGCCCATACTGTTACCACCCCTA
*
26748230 GCATGTCCACGGCTCCTAGATGGCTGCAAAACTACCCTCGGTGGCTGTGCAGTACTAAAACTCGG
66 GCATGACCACGGCTCCTAGATGGCTGCAAAACTACCCTCGGTGGCTGTGCAGTACTAAAACTCGG
26748295 AGCTTGTATTTGATCGACCCTCAGCGGATACTCATGAATGCTGTGCTCAGTAGACCCACATCTTA
131 AGCTTGTATTTGATCGACCCTCAGCGGATACTCATGAATGCTGTGCTCAGTAGACCCACATCTTA
* * *
26748360 AGCATATCCCAGTCATCCTCTAACATTCGCCTGGATGACGTCTACCACAATGCCCACAAGGCAAG
196 AGCATATCACAGTCATCCTCTAACATTCACCTGGATGACATCTACCACAATGCCCACAAGGCAAG
*
26748425 TTCCTAGTAAGTACAACAGGAGGCCCAACTTTAACTAGGCTCATCAGATTTGAC
261 TTCCCAGTAAGTACAACAGGAGGCCCAACTTTAACTAGGCTCATCAGATTTGAC
26748479 C
1 C
26748480 TTTTTCTTAG
Statistics
Matches: 299, Mismatches: 16, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
314 299 1.00
ACGTcount: A:0.25, C:0.31, G:0.19, T:0.25
Consensus pattern (314 bp):
CCTTAGTCTGTCCAGCACCTATACCCGGTGCTCTCTGCCTACAGCCCATACTGTTACCACCCCTA
GCATGACCACGGCTCCTAGATGGCTGCAAAACTACCCTCGGTGGCTGTGCAGTACTAAAACTCGG
AGCTTGTATTTGATCGACCCTCAGCGGATACTCATGAATGCTGTGCTCAGTAGACCCACATCTTA
AGCATATCACAGTCATCCTCTAACATTCACCTGGATGACATCTACCACAATGCCCACAAGGCAAG
TTCCCAGTAAGTACAACAGGAGGCCCAACTTTAACTAGGCTCATCAGATTTGAC
Found at i:26752066 original size:22 final size:22
Alignment explanation
Indices: 26752026--26752067 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
26752016 ATATTTGAGC
**
26752026 ATTGGTATTGAATTTAAATTGA
1 ATTGGTATTGAATCCAAATTGA
*
26752048 ATTGGTATTTAATCCAAATT
1 ATTGGTATTGAATCCAAATT
26752068 TTAATTATTA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.36, C:0.05, G:0.14, T:0.45
Consensus pattern (22 bp):
ATTGGTATTGAATCCAAATTGA
Found at i:26754482 original size:19 final size:18
Alignment explanation
Indices: 26754447--26754482 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
26754437 ATAATTAAAT
*
26754447 CCTTTTTTATTATTTTAA
1 CCTTTTTTATTACTTTAA
26754465 CCTTTTTTATTAACTTTA
1 CCTTTTTTATT-ACTTTA
26754483 TTCCCTATTC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 11 0.69
19 5 0.31
ACGTcount: A:0.22, C:0.14, G:0.00, T:0.64
Consensus pattern (18 bp):
CCTTTTTTATTACTTTAA
Found at i:26755438 original size:14 final size:14
Alignment explanation
Indices: 26755416--26755452 Score: 51
Period size: 14 Copynumber: 2.7 Consensus size: 14
26755406 ATTTTTAGAA
26755416 TTTTT-TTTT-ATT
1 TTTTTATTTTAATT
26755428 TTTTATATTTTAATT
1 TTTT-TATTTTAATT
26755443 TTTTTATTTT
1 TTTTTATTTT
26755453 CAAATAATAC
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
12 4 0.18
13 1 0.05
14 10 0.45
15 7 0.32
ACGTcount: A:0.16, C:0.00, G:0.00, T:0.84
Consensus pattern (14 bp):
TTTTTATTTTAATT
Found at i:26758242 original size:18 final size:18
Alignment explanation
Indices: 26758200--26758265 Score: 107
Period size: 18 Copynumber: 3.7 Consensus size: 18
26758190 TTCAATAATA
26758200 TGCAATCTTAGATATGA-
1 TGCAATCTTAGATATGAT
*
26758217 TACAATCTTAGATATGAT
1 TGCAATCTTAGATATGAT
26758235 TGCAATCTTAGATATGAT
1 TGCAATCTTAGATATGAT
26758253 ATGCAATCTTAGA
1 -TGCAATCTTAGA
26758266 AGATATGATT
Statistics
Matches: 45, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
17 16 0.36
18 17 0.38
19 12 0.27
ACGTcount: A:0.36, C:0.12, G:0.15, T:0.36
Consensus pattern (18 bp):
TGCAATCTTAGATATGAT
Found at i:26758272 original size:17 final size:19
Alignment explanation
Indices: 26758197--26758265 Score: 117
Period size: 17 Copynumber: 3.8 Consensus size: 19
26758187 ATTTTCAATA
26758197 ATATGCAATCTTAGATATG
1 ATATGCAATCTTAGATATG
26758216 ATA--CAATCTTAGATATG
1 ATATGCAATCTTAGATATG
26758233 AT-TGCAATCTTAGATATG
1 ATATGCAATCTTAGATATG
26758251 ATATGCAATCTTAGA
1 ATATGCAATCTTAGA
26758266 AGATATGATT
Statistics
Matches: 47, Mismatches: 0, Indels: 6
0.89 0.00 0.11
Matches are distributed among these distances:
17 16 0.34
18 16 0.34
19 15 0.32
ACGTcount: A:0.38, C:0.12, G:0.14, T:0.36
Consensus pattern (19 bp):
ATATGCAATCTTAGATATG
Found at i:26758291 original size:22 final size:22
Alignment explanation
Indices: 26758197--26758288 Score: 73
Period size: 17 Copynumber: 4.7 Consensus size: 22
26758187 ATTTTCAATA
26758197 ATATGCAATCTT---AGATATG
1 ATATGCAATCTTAGAAGATATG
26758216 ATA--CAATCTT---AGATATG
1 ATATGCAATCTTAGAAGATATG
26758233 AT-TGCAATCTT---AGATATG
1 ATATGCAATCTTAGAAGATATG
26758251 ATATGCAATCTTAGAAGATATG
1 ATATGCAATCTTAGAAGATATG
* *
26758273 ATTTTGTAATCTTAGA
1 A-TATGCAATCTTAGA
26758289 GATTTAATTT
Statistics
Matches: 64, Mismatches: 2, Indels: 10
0.84 0.03 0.13
Matches are distributed among these distances:
17 16 0.25
18 16 0.25
19 12 0.19
22 8 0.12
23 12 0.19
ACGTcount: A:0.37, C:0.10, G:0.15, T:0.38
Consensus pattern (22 bp):
ATATGCAATCTTAGAAGATATG
Found at i:26768872 original size:220 final size:220
Alignment explanation
Indices: 26768484--26769073 Score: 964
Period size: 220 Copynumber: 2.7 Consensus size: 220
26768474 CAGGCTAAAG
* * * * * * **
26768484 CATAGCAGATTTGACCTTCAGGTGTTTACACTGAAGTAGATCCAAGATGATTTAACATCTCTGTA
1 CATAGCAGATTTGGCTTTCACGTGTTTACGCTGAAGCAGATCTAAGATGATTTGGCATCTCTGTA
* * *
26768549 TTGTCAGAGAACAAATCGAAGAAATAGATTTGGCATCTCCATATTCGATGGAGAGAAGATCGAAG
66 CTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGAAGATCGAAG
*
26768614 ACATAGCAGATCTAACCTTTGGATGTTTTCACATCGAAGTAGATCCAAGATGATTTGGCATCCTT
131 ACATAGCAGATCTAACCTTCGGATGTTTTCACATCGAAGTAGATCCAAGATGATTTGGCATCCTT
*
26768679 GCATTTACAAGAAGCAGATCGAAGT
196 GCATTTACAAGAAGCAGATCGAAGA
* *
26768704 CATAGAAGATTTGGCTTTCACGTGTTTACGCTGAAGCAGATATAAGATGATTTGGCATCTCTGTA
1 CATAGCAGATTTGGCTTTCACGTGTTTACGCTGAAGCAGATCTAAGATGATTTGGCATCTCTGTA
* *
26768769 CTGTCAGAGAACAAATCGAAAAAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAAG
66 CTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGAAGATCGAAG
*
26768834 ACATAACAGATCTAACCTTCGGATGTTTTCACATCGAAGTAGATCCAAGATGATTTGGCATCCTT
131 ACATAGCAGATCTAACCTTCGGATGTTTTCACATCGAAGTAGATCCAAGATGATTTGGCATCCTT
* *
26768899 GCGTTTACAAGGAGCAGATCGAAGA
196 GCATTTACAAGAAGCAGATCGAAGA
*
26768924 CATAGCAGATTTGGCTTTCACGTGTTTACGCTGAAGCAGATCTAAGATGATTTGGCATATCTGTA
1 CATAGCAGATTTGGCTTTCACGTGTTTACGCTGAAGCAGATCTAAGATGATTTGGCATCTCTGTA
* *
26768989 CTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCAACGGAGAGTAGATCGAAG
66 CTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGAAGATCGAAG
*
26769054 ACATAGCAGATCTGACCTTC
131 ACATAGCAGATCTAACCTTC
26769074 ATTGAAGCAT
Statistics
Matches: 342, Mismatches: 28, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
220 342 1.00
ACGTcount: A:0.33, C:0.18, G:0.22, T:0.27
Consensus pattern (220 bp):
CATAGCAGATTTGGCTTTCACGTGTTTACGCTGAAGCAGATCTAAGATGATTTGGCATCTCTGTA
CTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGAAGATCGAAG
ACATAGCAGATCTAACCTTCGGATGTTTTCACATCGAAGTAGATCCAAGATGATTTGGCATCCTT
GCATTTACAAGAAGCAGATCGAAGA
Found at i:26768950 original size:89 final size:87
Alignment explanation
Indices: 26768821--26768981 Score: 198
Period size: 89 Copynumber: 1.8 Consensus size: 87
26768811 ATTCGACGGA
* * *
26768821 GAGCAGATCGAAGACATAACAGATCTAACCTTCGGATGTTTTCACATCGAAGTAGATCCAAGATG
1 GAGCAGATCGAAGACATAACAGATCTAACCTTCCGATGTTTACAC-T-GAAGCAGATCCAAGATG
26768886 ATTTGGCATCCTTGCGTTTACAAG
64 ATTTGGCATCCTTGCGTTTACAAG
* * ** * * *
26768910 GAGCAGATCGAAGACATAGCAGATTTGGCTTTCACG-TGTTTACGCTGAAGCAGATCTAAGATGA
1 GAGCAGATCGAAGACATAACAGATCTAACCTTC-CGATGTTTACACTGAAGCAGATCCAAGATGA
26768974 TTTGGCAT
65 TTTGGCAT
26768982 ATCTGTACTG
Statistics
Matches: 61, Mismatches: 10, Indels: 4
0.81 0.13 0.05
Matches are distributed among these distances:
87 24 0.39
88 1 0.02
89 35 0.57
90 1 0.02
ACGTcount: A:0.30, C:0.19, G:0.24, T:0.27
Consensus pattern (87 bp):
GAGCAGATCGAAGACATAACAGATCTAACCTTCCGATGTTTACACTGAAGCAGATCCAAGATGAT
TTGGCATCCTTGCGTTTACAAG
Found at i:26769144 original size:78 final size:78
Alignment explanation
Indices: 26769015--26769309 Score: 423
Period size: 78 Copynumber: 3.8 Consensus size: 78
26769005 CGAAGAAACA
** * * *
26769015 GATTTGGCATCTCCATATTCA-ACGGAGAGTAGATCGAAGACATAGCAGATCTGACCTTCATTGA
1 GATTTGGCATCTCTGTATT-AGACGGGGAGCAGATCGAAGACATAACAGATCTGACCTTCATTGA
* *
26769079 AGCATATCCAAGAT
65 AACAGATCCAAGAT
* *
26769093 GATTTGGCATCTCTGTATTAGACGGGGAGTAGATCGAAGACACAACAGATCTGACCTTCATTGAA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAACAGATCTGACCTTCATTGAA
*
26769158 TCAGATCCAAGAT
66 ACAGATCCAAGAT
* *
26769171 GATTTGGCATCTCTGTATTAGATGGGGAGCAGATCAAAGACATAACAGAT-TGGACCTTCATTGA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAACAGATCT-GACCTTCATTGA
26769235 AACAGATCCAAGAT
65 AACAGATCCAAGAT
* * *
26769249 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAGCATAGCTGACCTTCAT
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAACAGATCTGACCTTCAT
26769310 GTGTTTACAT
Statistics
Matches: 197, Mismatches: 17, Indels: 6
0.90 0.08 0.03
Matches are distributed among these distances:
77 2 0.01
78 194 0.98
79 1 0.01
ACGTcount: A:0.32, C:0.19, G:0.23, T:0.26
Consensus pattern (78 bp):
GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAACAGATCTGACCTTCATTGAA
ACAGATCCAAGAT
Found at i:26769502 original size:45 final size:45
Alignment explanation
Indices: 26769340--26769520 Score: 201
Period size: 45 Copynumber: 4.1 Consensus size: 45
26769330 CCAAGATGAT
* * *
26769340 AGATTTGGCATCTCTGTCTTAGACGGGGAACAAATC-AGAGATAAC
1 AGATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGA-AGATAAC
* * *
26769385 AGATTTGGCATCTCTGTATTAGAC-GGGATCA-AGTTGAAGA-AGC
1 AGATTTGGCATCTCTGTATTAGACGGGGAGCAGA-TCGAAGATAAC
** *
26769428 AGATTTAACGTCTCTGTATTAGACGGGGAGCAGATCGAAGATAAC
1 AGATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGATAAC
* * *
26769473 AGATTTGGCGTCTCTGTATTAGACGGGGAGCAGAT-AAAGATAGC
1 AGATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGATAAC
26769517 AGAT
1 AGAT
26769521 ATCGCCTTCC
Statistics
Matches: 117, Mismatches: 14, Indels: 11
0.82 0.10 0.08
Matches are distributed among these distances:
43 24 0.21
44 33 0.28
45 60 0.51
ACGTcount: A:0.32, C:0.15, G:0.28, T:0.25
Consensus pattern (45 bp):
AGATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGATAAC
Found at i:26769948 original size:18 final size:18
Alignment explanation
Indices: 26769923--26769959 Score: 56
Period size: 19 Copynumber: 2.0 Consensus size: 18
26769913 TGTTTCCCTG
*
26769923 ATTTTTTTTATATATTTTA
1 ATTTTTTTAATA-ATTTTA
26769942 ATTTTTTTAATAATTTTA
1 ATTTTTTTAATAATTTTA
26769960 GTATCATATC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 6 0.35
19 11 0.65
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (18 bp):
ATTTTTTTAATAATTTTA
Found at i:26776418 original size:52 final size:52
Alignment explanation
Indices: 26776271--26776421 Score: 160
Period size: 52 Copynumber: 2.9 Consensus size: 52
26776261 TAACATGCCA
* * *
26776271 ATGCCATATCCCAGATATGGTCTTATACGGAATCACATTATCACATCACACCG
1 ATGCCATAACCCAGCTATGGTCTTATACGGAAACACA-TATCACATCACACCG
* * * ***
26776324 ATGCCATAACCCAGCTACGGTCTTATACAGAAACTCGA-ATCACATTGTACCG
1 ATGCCATAACCCAGCTATGGTCTTATACGGAAACAC-ATATCACATCACACCG
* * * *
26776376 ATGCCATAGCCCATCTATGGTCTTATATGGAAGCACATATCACATC
1 ATGCCATAACCCAGCTATGGTCTTATACGGAAACACATATCACATC
26776422 TTTTCTGTCA
Statistics
Matches: 79, Mismatches: 17, Indels: 5
0.78 0.17 0.05
Matches are distributed among these distances:
51 1 0.01
52 47 0.59
53 30 0.38
54 1 0.01
ACGTcount: A:0.32, C:0.28, G:0.15, T:0.26
Consensus pattern (52 bp):
ATGCCATAACCCAGCTATGGTCTTATACGGAAACACATATCACATCACACCG
Found at i:26782420 original size:52 final size:52
Alignment explanation
Indices: 26782304--26782457 Score: 195
Period size: 52 Copynumber: 2.9 Consensus size: 52
26782294 ACATAACATG
* *
26782304 CCGATGCCATATCCCAGATATGGTCTTATACGGAATCACATTATCACATCACA
1 CCGATGCCATAGCCCAGCTATGGTCTTATACGGAATCACA-TATCACATCACA
* * ***
26782357 CCGATGCCATAGCCCAGCTATGGTCTTATATGGGAACTC-GA-ATCACATTGTA
1 CCGATGCCATAGCCCAGCTATGGTCTTATA-CGGAA-TCACATATCACATCACA
*
26782409 CCGATGCCATAGCCCAGCTATGGTCTTATACGGAAGCACATATCACATC
1 CCGATGCCATAGCCCAGCTATGGTCTTATACGGAATCACATATCACATC
26782458 TTTTCTGTCA
Statistics
Matches: 86, Mismatches: 11, Indels: 9
0.81 0.10 0.08
Matches are distributed among these distances:
50 1 0.01
51 5 0.06
52 45 0.52
53 28 0.33
54 5 0.06
55 2 0.02
ACGTcount: A:0.29, C:0.28, G:0.18, T:0.25
Consensus pattern (52 bp):
CCGATGCCATAGCCCAGCTATGGTCTTATACGGAATCACATATCACATCACA
Found at i:26785218 original size:11 final size:11
Alignment explanation
Indices: 26785202--26785227 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
26785192 AAATCAATAA
26785202 AACAAGGTAAG
1 AACAAGGTAAG
26785213 AACAAGGTAAG
1 AACAAGGTAAG
26785224 AACA
1 AACA
26785228 TCATGATTTC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.58, C:0.12, G:0.23, T:0.08
Consensus pattern (11 bp):
AACAAGGTAAG
Found at i:26786813 original size:46 final size:46
Alignment explanation
Indices: 26786761--26787171 Score: 513
Period size: 46 Copynumber: 9.0 Consensus size: 46
26786751 GCTTTCTGAA
* *
26786761 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
1 ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
* *
26786807 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
1 ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
* * * *
26786853 ATGAAATGTGTAAGACCATGGTTGAAAGGTACCATGGCAAAATGAT
1 ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
* *
26786899 ATGAAATGTGTAAGACCATGGTTGAAAGATATCATGGCAACATGAC
1 ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
** * * * * *
26786945 GGGAAATGAATAAAACCATGGTTG-AAGATACCATGGTAGCGTGAC
1 ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
* *
26786990 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACGTGAC
1 ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
* *
26787036 ATGAGAA-GAATAAGACCATGGTTGAAAGATACCATGGCAACGTGAC
1 ATGA-AATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
* * *
26787082 ATGAAAAGAATAAGACAATGGTTGAAAGATACCATGGCAACATGAC
1 ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
* * * * * *
26787128 A-GAAAATGAGTAAAACTATAGTTGAAAGACACTATGGCATCATG
1 ATG-AAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATG
26787172 TCAAAGATAA
Statistics
Matches: 331, Mismatches: 30, Indels: 8
0.90 0.08 0.02
Matches are distributed among these distances:
45 41 0.12
46 288 0.87
47 2 0.01
ACGTcount: A:0.41, C:0.13, G:0.24, T:0.21
Consensus pattern (46 bp):
ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
Found at i:26787105 original size:183 final size:183
Alignment explanation
Indices: 26786775--26787171 Score: 517
Period size: 183 Copynumber: 2.2 Consensus size: 183
26786765 AATGTGTAAG
* **
26786775 ACCATGGTTGAAAGATACCATGGCAACATGATATGAAATGTGTAAGACCATGGTTGAAAGATACC
1 ACCATGGTTG-AAGATACCATGGCAACATGACATGAAATGAATAAGACCATGGTTGAAAGATACC
* ** * *
26786840 ATGGCAACATGATATGAAATGTGTAAGACCATGGTTGAAAGGTACCATGGCAAAATGATATGAAA
65 ATGGCAACATGACATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAAAATGACATGAAA
* ** * * * *
26786905 TGTGTAAGACCATGGTTGAAAGATATCATGGCAACATGACGGGAAATGAATAAA
130 AGAATAAGACAATGGTTGAAAGATACCATGGCAACATGACAGAAAATGAATAAA
* * *
26786959 ACCATGGTTGAAGATACCATGGTAGCGTGACATGAAATGAATAAGACCATGGTTGAAAGATACCA
1 ACCATGGTTGAAGATACCATGGCAACATGACATGAAATGAATAAGACCATGGTTGAAAGATACCA
* **
26787024 TGGCAACGTGACATGAGAA-GAATAAGACCATGGTTGAAAGATACCATGGCAACGTGACATGAAA
66 TGGCAACATGACATGA-AATGAATAAGACCATGGTTGAAAGATACCATGGCAAAATGACATGAAA
*
26787088 AGAATAAGACAATGGTTGAAAGATACCATGGCAACATGACAGAAAATGAGTAAA
130 AGAATAAGACAATGGTTGAAAGATACCATGGCAACATGACAGAAAATGAATAAA
* * * * *
26787142 ACTATAGTTGAAAGACACTATGGCATCATG
1 ACCATGGTTG-AAGATACCATGGCAACATG
26787172 TCAAAGATAA
Statistics
Matches: 182, Mismatches: 29, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
183 156 0.86
184 26 0.14
ACGTcount: A:0.41, C:0.14, G:0.24, T:0.21
Consensus pattern (183 bp):
ACCATGGTTGAAGATACCATGGCAACATGACATGAAATGAATAAGACCATGGTTGAAAGATACCA
TGGCAACATGACATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAAAATGACATGAAAA
GAATAAGACAATGGTTGAAAGATACCATGGCAACATGACAGAAAATGAATAAA
Found at i:26787234 original size:77 final size:77
Alignment explanation
Indices: 26787107--26787264 Score: 307
Period size: 77 Copynumber: 2.1 Consensus size: 77
26787097 CAATGGTTGA
*
26787107 AAGATACCATGGCAACATGACAGAAAATGAGTAAAACTATAGTTGAAAGACACTATGGCATCATG
1 AAGATACCATGGCAACATGACAGAAAATGAGTAAAACCATAGTTGAAAGACACTATGGCATCATG
26787172 TCAAAGATAAAT
66 TCAAAGATAAAT
26787184 AAGATACCATGGCAACATGACAGAAAATGAGTAAAACCATAGTTGAAAGACACTATGGCATCATG
1 AAGATACCATGGCAACATGACAGAAAATGAGTAAAACCATAGTTGAAAGACACTATGGCATCATG
26787249 TCAAAGATAAAT
66 TCAAAGATAAAT
26787261 AAGA
1 AAGA
26787265 CCGTGGATAG
Statistics
Matches: 80, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
77 80 1.00
ACGTcount: A:0.47, C:0.15, G:0.18, T:0.20
Consensus pattern (77 bp):
AAGATACCATGGCAACATGACAGAAAATGAGTAAAACCATAGTTGAAAGACACTATGGCATCATG
TCAAAGATAAAT
Found at i:26793201 original size:20 final size:19
Alignment explanation
Indices: 26793156--26793209 Score: 63
Period size: 20 Copynumber: 2.7 Consensus size: 19
26793146 ACGCTTAATG
* *
26793156 TTAATTAAGTAAAGGTTAA
1 TTAATTAATTAAAGATTAA
26793175 TTAAATTAATTAAAGATTAA
1 TT-AATTAATTAAAGATTAA
26793195 TCTAATTATATTAAA
1 T-TAATTA-ATTAAA
26793210 AGACAAAATT
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
19 2 0.07
20 21 0.70
21 7 0.23
ACGTcount: A:0.50, C:0.02, G:0.07, T:0.41
Consensus pattern (19 bp):
TTAATTAATTAAAGATTAA
Found at i:26797222 original size:203 final size:203
Alignment explanation
Indices: 26796724--26797338 Score: 1162
Period size: 203 Copynumber: 3.0 Consensus size: 203
26796714 TTAAAGAAAT
26796724 AAATA-ATAAA-ATTATTGAGCTTTTTAAACCTAATAAATTTACTACAGAAATTCAACCAAAATT
1 AAATACATAAACATTATTGAGCTTTTTAAACCTAATAAATTTACTACAGAAATTCAACCAAAATT
*
26796787 ATTACATTTAAGGGATCTATTAATACCAAGAAACTGGATGATAGTTAGAATAAGTAGTGCTAGTA
66 ATTACATTTAAGGGATCTATTAATACCAAGAAACTGGATGATAGTTAGAATAAGTGGTGCTAGTA
*
26796852 CTTCAAAATCTGTAAGTACTATAGAATATATGTCGTCAGGAGATAGATTATTTTTTTAAAAATAA
131 CTTCAAAACCTGTAAGTACTATAGAATATATGTCGTCAGGAGATAGATTA-TTTTTTAAAAATAA
26796917 TGCTATAAC
195 TGCTATAAC
26796926 AAATACATAAACATTATTGAGCTTTTTAAACCTAATAAATTTACTACAGAAATTCAACCAAAATT
1 AAATACATAAACATTATTGAGCTTTTTAAACCTAATAAATTTACTACAGAAATTCAACCAAAATT
*
26796991 ATTACATTTAAGGGATCTATTGATACCAAGAAACTGGATGATAGTTAGAATAAGTGGTGCTAGTA
66 ATTACATTTAAGGGATCTATTAATACCAAGAAACTGGATGATAGTTAGAATAAGTGGTGCTAGTA
26797056 CTTCAAAACCTGTAAGTACTATAGAATATATGTCGTCAGGAGATAGATTATTTTTTAAAAATAAT
131 CTTCAAAACCTGTAAGTACTATAGAATATATGTCGTCAGGAGATAGATTATTTTTTAAAAATAAT
26797121 GCTATAAC
196 GCTATAAC
26797129 AAATACATAAACATTATTGAGCTTTTTAAACCTAATAAATTTACTACAGAAATTCAACCAAAATT
1 AAATACATAAACATTATTGAGCTTTTTAAACCTAATAAATTTACTACAGAAATTCAACCAAAATT
26797194 ATTACATTTAAGGGATCTATTAATACCAAGAAACTGGATGATAGTTAGAATAAGTGGTGCTAGTA
66 ATTACATTTAAGGGATCTATTAATACCAAGAAACTGGATGATAGTTAGAATAAGTGGTGCTAGTA
*
26797259 CTTCAAAACCTGTAAGTACTATAGAATATATGTCGTCAGGAGATAGATTATTTTTAAAAAATAAT
131 CTTCAAAACCTGTAAGTACTATAGAATATATGTCGTCAGGAGATAGATTATTTTTTAAAAATAAT
*
26797324 GTTATAAC
196 GCTATAAC
26797332 AAATACA
1 AAATACA
26797339 AATGATAATT
Statistics
Matches: 405, Mismatches: 6, Indels: 3
0.98 0.01 0.01
Matches are distributed among these distances:
202 5 0.01
203 235 0.58
204 165 0.41
ACGTcount: A:0.42, C:0.12, G:0.13, T:0.33
Consensus pattern (203 bp):
AAATACATAAACATTATTGAGCTTTTTAAACCTAATAAATTTACTACAGAAATTCAACCAAAATT
ATTACATTTAAGGGATCTATTAATACCAAGAAACTGGATGATAGTTAGAATAAGTGGTGCTAGTA
CTTCAAAACCTGTAAGTACTATAGAATATATGTCGTCAGGAGATAGATTATTTTTTAAAAATAAT
GCTATAAC
Found at i:26798297 original size:529 final size:531
Alignment explanation
Indices: 26797297--26798370 Score: 2107
Period size: 529 Copynumber: 2.0 Consensus size: 531
26797287 TATGTCGTCA
*
26797297 GGAGATAGATTATTTTTAAAAAATAATGTTATAACAAATACAAATGATAATTTAGTTTTACCTTC
1 GGAGATATATTATTTTTAAAAAATAATGTTATAACAAATACAAATGATAATTTAGTTTTACCTTC
26797362 AAATACTCAAACAGAGAAAGACGAGGATAATATAAGTACAAGTTCAACACCAATAGGAATGAAAA
66 AAATACTCAAACAGAGAAAGACGAGGATAATATAAGTACAAGTTCAACACCAATAGGAATGAAAA
26797427 CAGTTAAAATACCTATTTTTCCAACTGAACCTAGTAGAAATTCTAGAAACACTAGAATGGAAGAA
131 CAGTTAAAATACCTATTTTTCCAACTGAACCTAGTAGAAATTCTAGAAACACTAGAATGGAAGAA
26797492 ATTTAAACATCAACAATTATTCAATAGATGAAAATTGGAAATAGTGATGTTATTACATTTTCAAA
196 ATTTAAACATCAACAATTATTCAATAGATGAAAATTGGAAATAGTGATGTTATTACATTTTCAAA
26797557 TTTTTAACGAAGAAAATATTATATATATATTGAAATTACATTCCAATTTAGAGAATATAAAACAT
261 TTTTTAACGAAGAAAATATTATATATATATTGAAATTACATTCCAATTTAGAGAATATAAAACAT
26797622 ATTCTTTACATGCTTTATTAGACACTGGAGCTACCACCAGTAGTTGTAAAAAAAATACCATTCCT
326 ATTCTTTACATGCTTTATTAGACACTGGAGCTACCACCAGTAGTTGTAAAAAAAATACCATTCCT
26797687 GTAGAAAAATGGGAACCAATGAAAAATCCAATTAGAGCCATAGGAATAGATGGTAATGAAACCAT
391 GTAGAAAAATGGGAACCAATGAAAAATCCAATTAGAGCCATAGGAATAGATGGTAATGAAACCAT
26797752 AATAGGATTTAAGGCTAGAAAAATACCAATCTACGTAAATACCATTCCTAAAATATTATGTTTTC
456 AATAGGATTTAAGGCTAGAAAAATACCAATCTACGTAAATACCATTCCTAAAATATTATGTTTTC
26797817 CTGAAATGCGT
521 CTGAAATGCGT
**
26797828 GGAGATATATTATTTTTTTAAAATAATGTTATAACAAATACAAATGATAATTTAGTTTTACCTTC
1 GGAGATATATTATTTTTAAAAAATAATGTTATAACAAATACAAATGATAATTTAGTTTTACCTTC
26797893 AAATACTCAAACAGAGAAAGACGAGGAT-A-ATAAGTACAAGTTCAACACCAATAGGAATGAAAA
66 AAATACTCAAACAGAGAAAGACGAGGATAATATAAGTACAAGTTCAACACCAATAGGAATGAAAA
26797956 CAGTTAAAATACCTATTTTTCCAACTGAACCTAGTAGAAATTCTAGAAACACTAGAATGGAAGAA
131 CAGTTAAAATACCTATTTTTCCAACTGAACCTAGTAGAAATTCTAGAAACACTAGAATGGAAGAA
26798021 ATTTAAACATCAACAATTATTCAATAGATGAAAATTGGAAATAGTGATGTTATTACATTTTCAAA
196 ATTTAAACATCAACAATTATTCAATAGATGAAAATTGGAAATAGTGATGTTATTACATTTTCAAA
26798086 TTTTTAACGAAGAAAATATTATATATATATTGAAATTACATTCCAATTTAGAGAATATAAAACAT
261 TTTTTAACGAAGAAAATATTATATATATATTGAAATTACATTCCAATTTAGAGAATATAAAACAT
26798151 ATTCTTTACATGCTTTATTAGACACTGGAGCTACCACCAGTAGTTGTAAAAAAAATACCATTCCT
326 ATTCTTTACATGCTTTATTAGACACTGGAGCTACCACCAGTAGTTGTAAAAAAAATACCATTCCT
26798216 GTAGAAAAATGGGAACCAATGAAAAATCCAATTAGAGCCATAGGAATAGATGGTAATGAAACCAT
391 GTAGAAAAATGGGAACCAATGAAAAATCCAATTAGAGCCATAGGAATAGATGGTAATGAAACCAT
26798281 AATAGGATTTAAGGCTAGAAAAATACCAATCTACGTAAATACCATTCCTAAAATATTATGTTTTC
456 AATAGGATTTAAGGCTAGAAAAATACCAATCTACGTAAATACCATTCCTAAAATATTATGTTTTC
26798346 CTGAAATGCGT
521 CTGAAATGCGT
26798357 GGAGATATATTATT
1 GGAGATATATTATT
26798371 AGGAAATAAT
Statistics
Matches: 540, Mismatches: 3, Indels: 2
0.99 0.01 0.00
Matches are distributed among these distances:
529 449 0.83
530 1 0.00
531 90 0.17
ACGTcount: A:0.44, C:0.13, G:0.13, T:0.30
Consensus pattern (531 bp):
GGAGATATATTATTTTTAAAAAATAATGTTATAACAAATACAAATGATAATTTAGTTTTACCTTC
AAATACTCAAACAGAGAAAGACGAGGATAATATAAGTACAAGTTCAACACCAATAGGAATGAAAA
CAGTTAAAATACCTATTTTTCCAACTGAACCTAGTAGAAATTCTAGAAACACTAGAATGGAAGAA
ATTTAAACATCAACAATTATTCAATAGATGAAAATTGGAAATAGTGATGTTATTACATTTTCAAA
TTTTTAACGAAGAAAATATTATATATATATTGAAATTACATTCCAATTTAGAGAATATAAAACAT
ATTCTTTACATGCTTTATTAGACACTGGAGCTACCACCAGTAGTTGTAAAAAAAATACCATTCCT
GTAGAAAAATGGGAACCAATGAAAAATCCAATTAGAGCCATAGGAATAGATGGTAATGAAACCAT
AATAGGATTTAAGGCTAGAAAAATACCAATCTACGTAAATACCATTCCTAAAATATTATGTTTTC
CTGAAATGCGT
Found at i:26801656 original size:17 final size:17
Alignment explanation
Indices: 26801614--26801657 Score: 54
Period size: 17 Copynumber: 2.5 Consensus size: 17
26801604 TTTATTTTGG
*
26801614 TTTTTATTGTTTTCTAA
1 TTTTTTTTGTTTTCTAA
26801631 TTTTCTTTTGTTTT-TAA
1 TTTT-TTTTGTTTTCTAA
26801648 TTGTTTTTTG
1 TT-TTTTTTG
26801658 GATTTCTGGT
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
17 14 0.58
18 10 0.42
ACGTcount: A:0.11, C:0.05, G:0.09, T:0.75
Consensus pattern (17 bp):
TTTTTTTTGTTTTCTAA
Found at i:26801663 original size:28 final size:28
Alignment explanation
Indices: 26801601--26801664 Score: 69
Period size: 28 Copynumber: 2.3 Consensus size: 28
26801591 TAAGCTTTAA
*
26801601 GGATTTATTTTGGTTTTTATTGTTTTCT
1 GGATTTCTTTTGGTTTTTATTGTTTTCT
* *
26801629 -AATTTTCTTTT-GTTTTTAATTGTTTTTT
1 GGA-TTTCTTTTGGTTTTT-ATTGTTTTCT
26801657 GGATTTCT
1 GGATTTCT
26801665 GGTGTTGTTA
Statistics
Matches: 29, Mismatches: 4, Indels: 6
0.74 0.10 0.15
Matches are distributed among these distances:
27 7 0.24
28 21 0.72
29 1 0.03
ACGTcount: A:0.12, C:0.05, G:0.14, T:0.69
Consensus pattern (28 bp):
GGATTTCTTTTGGTTTTTATTGTTTTCT
Found at i:26819188 original size:26 final size:28
Alignment explanation
Indices: 26819159--26819215 Score: 73
Period size: 26 Copynumber: 2.1 Consensus size: 28
26819149 TCTTTCATTT
* *
26819159 ATTTTTTTATTTTTTTAATCAT-T-AAA
1 ATTTTATTATTTTTTAAATCATCTGAAA
*
26819185 ATTTTATTCTTTTTTAAATCATCTGAAA
1 ATTTTATTATTTTTTAAATCATCTGAAA
26819213 ATT
1 ATT
26819216 GATAAAAAAT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
26 19 0.73
27 1 0.04
28 6 0.23
ACGTcount: A:0.32, C:0.07, G:0.02, T:0.60
Consensus pattern (28 bp):
ATTTTATTATTTTTTAAATCATCTGAAA
Found at i:26828035 original size:18 final size:18
Alignment explanation
Indices: 26828012--26828047 Score: 56
Period size: 18 Copynumber: 2.0 Consensus size: 18
26828002 GATATGATAC
26828012 TAAAAT-TATTAAAAAAAT
1 TAAAATATA-TAAAAAAAT
26828030 TAAAATATATAAAAAAAT
1 TAAAATATATAAAAAAAT
26828048 CAGGGAAACA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 15 0.88
19 2 0.12
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (18 bp):
TAAAATATATAAAAAAAT
Found at i:26828371 original size:17 final size:18
Alignment explanation
Indices: 26828337--26828389 Score: 81
Period size: 17 Copynumber: 2.9 Consensus size: 18
26828327 AATCATATAT
26828337 TCTAAGATTGCAATCATA
1 TCTAAGATTGCAATCATA
*
26828355 TCTAAGATTG-TATCATA
1 TCTAAGATTGCAATCATA
26828372 TCTAAGATTGCATATCAT
1 TCTAAGATTGCA-ATCAT
26828390 TGAAGATTAT
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
17 16 0.52
18 10 0.32
19 5 0.16
ACGTcount: A:0.36, C:0.15, G:0.11, T:0.38
Consensus pattern (18 bp):
TCTAAGATTGCAATCATA
Found at i:26828545 original size:21 final size:20
Alignment explanation
Indices: 26828508--26828546 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
26828498 TTGGACTTCA
**
26828508 TTTTTTTTTGGGTTTATTAT
1 TTTTTTTTTGGACTTATTAT
26828528 TTTTGTTTTTGGACTTATT
1 TTTT-TTTTTGGACTTATT
26828547 TCTGGACCCG
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 4 0.25
21 12 0.75
ACGTcount: A:0.10, C:0.03, G:0.15, T:0.72
Consensus pattern (20 bp):
TTTTTTTTTGGACTTATTAT
Found at i:26828794 original size:45 final size:45
Alignment explanation
Indices: 26828739--26829012 Score: 243
Period size: 45 Copynumber: 6.1 Consensus size: 45
26828729 GGAAGGCGAT
* * *** *
26828739 ATCTGCTATCTTTGATCTGCTCCTTATCTAATACAGAGGTGCCAA
1 ATCTGTTATCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAA
*
26828784 ATCTGTTATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAA
1 ATCTGTTATCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAA
* * *
26828829 ATTTGCT-TCTTC-AGTTTGCTCCCCGTCTAATACAGAGATGCCAA
1 ATCTGTTATCTTCGA-TCTGCTCCCCGTCTAATACAGAGATGCCAA
* * * *
26828873 ATCTATTATCTCCGATTTGTTCCCCGTCTAATACAGAGATGCCAA
1 ATCTGTTATCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAA
* * * * * * * *
26828918 ATCTGTCATCTTGGATCTG--CCTCGATGTAA-ACACATGAAGGTCAG
1 ATCTGTTATCTTCGATCTGCTCCCCG-TCTAATACAGA-G-ATGCCAA
* *
26828963 ATCTGCTATGTCTTCGATCTGCTCACCGTCTAATACAGAGATGCCAA
1 ATCTG-T-TATCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAA
26829010 ATC
1 ATC
26829013 ATCTTAGATC
Statistics
Matches: 181, Mismatches: 37, Indels: 20
0.76 0.16 0.08
Matches are distributed among these distances:
43 9 0.05
44 42 0.23
45 99 0.55
46 2 0.01
47 17 0.09
48 5 0.03
49 7 0.04
ACGTcount: A:0.25, C:0.27, G:0.16, T:0.32
Consensus pattern (45 bp):
ATCTGTTATCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAA
Found at i:26829081 original size:78 final size:78
Alignment explanation
Indices: 26828952--26829246 Score: 450
Period size: 78 Copynumber: 3.8 Consensus size: 78
26828942 ATGTAAACAC
*
26828952 ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCACCGTCTAATACAGAGATGCCAAATCATCT
1 ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
*
26829017 TAGATCTGCTTCA
66 TGGATCTGCTTCA
* * *
26829030 ATGAAGGTCCA-ATCTGTTATGTCTTTGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATA
1 ATGAAGGT-CAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATC
*
26829094 TTGGATCTACTTCA
65 TTGGATCTGCTTCA
* *
26829108 ATGAAGGTCAGATCTGCTGTGTCTTCGATCTGCTCCTCGTCTAATACAGAGATGCCAAATCATCT
1 ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
26829173 TGGATCTGCTTCA
66 TGGATCTGCTTCA
** * *
26829186 ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCTTCGTCGAATA-TGAAGATGCCAAATC
1 ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAG-AGATGCCAAATC
26829247 TGTTTCTTCG
Statistics
Matches: 198, Mismatches: 16, Indels: 6
0.90 0.07 0.03
Matches are distributed among these distances:
77 3 0.02
78 193 0.97
79 2 0.01
ACGTcount: A:0.26, C:0.23, G:0.19, T:0.32
Consensus pattern (78 bp):
ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
TGGATCTGCTTCA
Found at i:26829509 original size:44 final size:44
Alignment explanation
Indices: 26829427--26829725 Score: 206
Period size: 44 Copynumber: 6.9 Consensus size: 44
26829417 ATCTGCTATG
* ** *
26829427 TCTTCGATCTGCTCTCC-GTCGAATATGGAGATGCCAAATCTACTA
1 TCTTCGATCTGCTC-CCTGAC-AATACAGAGATGTCAAATCTACTA
* * * *
26829472 TC-TCTGATTTGCTCTCTGACCATACAGAGATGTCAAATCTGCTA
1 TCTTC-GATCTGCTCCCTGACAATACAGAGATGTCAAATCTACTA
* *
26829516 TCTTCGATCTGCTCCCTGACAATACAGGGATGTCAAATCTGCT-
1 TCTTCGATCTGCTCCCTGACAATACAGAGATGTCAAATCTACTA
* * * *
26829559 TCTTGGATTTGC-CCCTCGTCAAATAC-GAAGATGCCAAA--T-C-A
1 TCTTCGATCTGCTCCCT-GAC-AATACAG-AGATGTCAAATCTACTA
* * * * * *
26829600 TCTTGGATCTGCTCCCCGTCGAATACGGAGATGCCAAATAT-C-A
1 TCTTCGATCTGCTCCCTGAC-AATACAGAGATGTCAAATCTACTA
* * * *
26829643 TCTTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCTGCTA
1 TCTTCGATCTGCTCCCTGACAATACAGAGATGTCAAATCTACTA
* * * *
26829687 TCTTTGATCTGCTCTCTGATAATACAGAGATGCCAAATC
1 TCTTCGATCTGCTCCCTGACAATACAGAGATGTCAAATC
26829726 ATCATGGATC
Statistics
Matches: 211, Mismatches: 30, Indels: 27
0.79 0.11 0.10
Matches are distributed among these distances:
41 30 0.14
42 26 0.12
43 33 0.16
44 108 0.51
45 14 0.07
ACGTcount: A:0.26, C:0.27, G:0.17, T:0.30
Consensus pattern (44 bp):
TCTTCGATCTGCTCCCTGACAATACAGAGATGTCAAATCTACTA
Found at i:26829625 original size:41 final size:44
Alignment explanation
Indices: 26829559--26829656 Score: 132
Period size: 41 Copynumber: 2.3 Consensus size: 44
26829549 CAAATCTGCT
*
26829559 TCTTGGATTTGC-CCCTCGTCAAATACGAAGATGCC-AA-ATCA
1 TCTTGGATCTGCTCCCTCGTCAAATACGAAGATGCCAAATATCA
* *
26829600 TCTTGGATCTGCTCCC-CGTCGAATACGGAGATGCCAAATATCA
1 TCTTGGATCTGCTCCCTCGTCAAATACGAAGATGCCAAATATCA
*
26829643 TCTTCGATCTGCTC
1 TCTTGGATCTGCTC
26829657 TCTGACAATA
Statistics
Matches: 50, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
41 28 0.56
42 5 0.10
43 17 0.34
ACGTcount: A:0.24, C:0.29, G:0.18, T:0.29
Consensus pattern (44 bp):
TCTTGGATCTGCTCCCTCGTCAAATACGAAGATGCCAAATATCA
Found at i:26840739 original size:22 final size:21
Alignment explanation
Indices: 26840704--26840779 Score: 68
Period size: 22 Copynumber: 3.7 Consensus size: 21
26840694 AGGTATCTTC
* *
26840704 TACAAATTAAATCTCTAAGAT
1 TACAAATCATATCTCTAAGAT
26840725 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATC-TCTAAGAT
* *
26840748 TGCATATCATA--TCTAAGAT
1 TACAAATCATATCTCTAAGAT
*
26840767 TGC-AATCATATCT
1 TACAAATCATATCT
26840780 AAGATTGCAT
Statistics
Matches: 46, Mismatches: 5, Indels: 9
0.77 0.08 0.15
Matches are distributed among these distances:
18 6 0.13
19 11 0.24
20 1 0.02
21 3 0.07
22 15 0.33
23 10 0.22
ACGTcount: A:0.41, C:0.17, G:0.07, T:0.36
Consensus pattern (21 bp):
TACAAATCATATCTCTAAGAT
Found at i:26840776 original size:18 final size:19
Alignment explanation
Indices: 26840740--26840794 Score: 103
Period size: 18 Copynumber: 2.9 Consensus size: 19
26840730 AATCATATCT
26840740 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
26840759 TCTAAGATTGCA-ATCATA
1 TCTAAGATTGCATATCATA
26840777 TCTAAGATTGCATATCAT
1 TCTAAGATTGCATATCAT
26840795 TGAAGATTAT
Statistics
Matches: 35, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
18 18 0.51
19 17 0.49
ACGTcount: A:0.36, C:0.16, G:0.11, T:0.36
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:26840950 original size:21 final size:20
Alignment explanation
Indices: 26840913--26840951 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
26840903 TTGGACTTCG
**
26840913 TTTTTTTTTGGGTTTATTAT
1 TTTTTTTTTGGACTTATTAT
26840933 TTTTGTTTTTGGACTTATT
1 TTTT-TTTTTGGACTTATT
26840952 TCTGGGTCCG
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 4 0.25
21 12 0.75
ACGTcount: A:0.10, C:0.03, G:0.15, T:0.72
Consensus pattern (20 bp):
TTTTTTTTTGGACTTATTAT
Found at i:26846267 original size:21 final size:21
Alignment explanation
Indices: 26846238--26846286 Score: 80
Period size: 21 Copynumber: 2.3 Consensus size: 21
26846228 CAAGAAATTA
* *
26846238 TGGTAAGTAAAGGTAAGGTTG
1 TGGTGAGTAAAGGTAAGATTG
26846259 TGGTGAGTAAAGGTAAGATTG
1 TGGTGAGTAAAGGTAAGATTG
26846280 TGGTGAG
1 TGGTGAG
26846287 CCACAGTGAA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.31, C:0.00, G:0.41, T:0.29
Consensus pattern (21 bp):
TGGTGAGTAAAGGTAAGATTG
Found at i:26849393 original size:10 final size:10
Alignment explanation
Indices: 26849378--26849416 Score: 53
Period size: 10 Copynumber: 3.8 Consensus size: 10
26849368 CCTCTCAAAG
26849378 TTATATTAAT
1 TTATATTAAT
26849388 TTATATTAAT
1 TTATATTAAT
26849398 ATTA-ATTTAAT
1 -TTATA-TTAAT
26849409 TTATATTA
1 TTATATTA
26849417 TCAAAATACC
Statistics
Matches: 26, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
10 17 0.65
11 9 0.35
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (10 bp):
TTATATTAAT
Found at i:26849401 original size:16 final size:15
Alignment explanation
Indices: 26849380--26849416 Score: 56
Period size: 16 Copynumber: 2.4 Consensus size: 15
26849370 TCTCAAAGTT
26849380 ATATTAATTTATATTA
1 ATATTAATTTA-ATTA
*
26849396 ATATTAATTTAATTT
1 ATATTAATTTAATTA
26849411 ATATTA
1 ATATTA
26849417 TCAAAATACC
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
15 9 0.45
16 11 0.55
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (15 bp):
ATATTAATTTAATTA
Found at i:26849470 original size:57 final size:56
Alignment explanation
Indices: 26849328--26849470 Score: 170
Period size: 57 Copynumber: 2.6 Consensus size: 56
26849318 TTTCAATTAC
26849328 ATATCAAAATATTTATATAAAAATAATG----ATTATCAAAATACCTCTCAAAGTT
1 ATATCAAAATATTTATATAAAAATAATGTTATATTATCAAAATACCTCTCAAAGTT
* * * * **
26849380 ATATTAATTTATATTAATATTAATTTAAT-TTATATTATCAAAATACCTCTCAAAGTT
1 ATATCAA--AATATTTATATAAAAATAATGTTATATTATCAAAATACCTCTCAAAGTT
26849437 ATATCAAAATATTTATATAAAAATAATGATTATA
1 ATATCAAAATATTTATATAAAAATAATG-TTATA
26849471 AAAATAATAA
Statistics
Matches: 71, Mismatches: 12, Indels: 11
0.76 0.13 0.12
Matches are distributed among these distances:
52 6 0.08
54 15 0.21
55 15 0.21
57 35 0.49
ACGTcount: A:0.48, C:0.08, G:0.03, T:0.41
Consensus pattern (56 bp):
ATATCAAAATATTTATATAAAAATAATGTTATATTATCAAAATACCTCTCAAAGTT
Found at i:26853838 original size:19 final size:19
Alignment explanation
Indices: 26853806--26853851 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
26853796 ACAACATATA
* * *
26853806 ATAATGTCACATTATTTAC
1 ATAATATCAAATTATTCAC
26853825 ATAATATCAAATTATTCAC
1 ATAATATCAAATTATTCAC
26853844 ATATATAT
1 ATA-ATAT
26853852 ATGCTTACAA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
19 19 0.83
20 4 0.17
ACGTcount: A:0.43, C:0.13, G:0.02, T:0.41
Consensus pattern (19 bp):
ATAATATCAAATTATTCAC
Found at i:26856284 original size:15 final size:15
Alignment explanation
Indices: 26856259--26856322 Score: 76
Period size: 15 Copynumber: 4.3 Consensus size: 15
26856249 AACAACAAAA
*
26856259 CCAAGATAAAGAAAC
1 CCAACATAAAGAAAC
26856274 CCAGA-ATAAAGAAAC
1 CCA-ACATAAAGAAAC
*
26856289 CCAACATAAAGAAAT
1 CCAACATAAAGAAAC
* *
26856304 CCAACATAAGGAAAT
1 CCAACATAAAGAAAC
26856319 CCAA
1 CCAA
26856323 ATTACAATAC
Statistics
Matches: 45, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
14 1 0.02
15 43 0.96
16 1 0.02
ACGTcount: A:0.58, C:0.22, G:0.11, T:0.09
Consensus pattern (15 bp):
CCAACATAAAGAAAC
Found at i:26862833 original size:15 final size:15
Alignment explanation
Indices: 26862808--26862886 Score: 88
Period size: 15 Copynumber: 5.3 Consensus size: 15
26862798 AACAACAAAA
*
26862808 CCAAGATAAAGAAAC
1 CCAACATAAAGAAAC
26862823 CCAGA-ATAAAGAAAC
1 CCA-ACATAAAGAAAC
*
26862838 CCAACATAAAGAAAT
1 CCAACATAAAGAAAC
*
26862853 CCAACATAAAGAAAT
1 CCAACATAAAGAAAC
* * *
26862868 CCAAGATAAGGAAAT
1 CCAACATAAAGAAAC
26862883 CCAA
1 CCAA
26862887 ATTACAATAT
Statistics
Matches: 59, Mismatches: 3, Indels: 4
0.89 0.05 0.06
Matches are distributed among these distances:
14 1 0.02
15 57 0.97
16 1 0.02
ACGTcount: A:0.58, C:0.20, G:0.11, T:0.10
Consensus pattern (15 bp):
CCAACATAAAGAAAC
Found at i:26862847 original size:30 final size:30
Alignment explanation
Indices: 26862808--26862886 Score: 97
Period size: 30 Copynumber: 2.6 Consensus size: 30
26862798 AACAACAAAA
26862808 CCAAGATAAAGAAACCCAGA-ATAAAGAAAC
1 CCAAGATAAAGAAACCCA-ACATAAAGAAAC
* * *
26862838 CCAACATAAAGAAATCCAACATAAAGAAAT
1 CCAAGATAAAGAAACCCAACATAAAGAAAC
* *
26862868 CCAAGATAAGGAAATCCAA
1 CCAAGATAAAGAAACCCAA
26862887 ATTACAATAT
Statistics
Matches: 43, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
29 1 0.02
30 42 0.98
ACGTcount: A:0.58, C:0.20, G:0.11, T:0.10
Consensus pattern (30 bp):
CCAAGATAAAGAAACCCAACATAAAGAAAC
Found at i:26866911 original size:19 final size:19
Alignment explanation
Indices: 26866887--26866953 Score: 64
Period size: 19 Copynumber: 3.3 Consensus size: 19
26866877 ATAATGTAAC
26866887 ATTATTTACAGAATATCAA
1 ATTATTTACAGAATATCAA
* *
26866906 ATTATTCACATATATAT-ATA
1 ATTATTTACAGA-ATATCA-A
26866926 CTTATTATTTACAGAATATCAA
1 ---ATTATTTACAGAATATCAA
26866948 ATTATT
1 ATTATT
26866954 CACATATATA
Statistics
Matches: 38, Mismatches: 4, Indels: 12
0.70 0.07 0.22
Matches are distributed among these distances:
19 17 0.45
20 5 0.13
22 5 0.13
23 11 0.29
ACGTcount: A:0.43, C:0.10, G:0.03, T:0.43
Consensus pattern (19 bp):
ATTATTTACAGAATATCAA
Found at i:26866935 original size:42 final size:42
Alignment explanation
Indices: 26866887--26866971 Score: 170
Period size: 42 Copynumber: 2.0 Consensus size: 42
26866877 ATAATGTAAC
26866887 ATTATTTACAGAATATCAAATTATTCACATATATATATACTT
1 ATTATTTACAGAATATCAAATTATTCACATATATATATACTT
26866929 ATTATTTACAGAATATCAAATTATTCACATATATATATACTT
1 ATTATTTACAGAATATCAAATTATTCACATATATATATACTT
26866971 A
1 A
26866972 CAACTCATGT
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 43 1.00
ACGTcount: A:0.44, C:0.12, G:0.02, T:0.42
Consensus pattern (42 bp):
ATTATTTACAGAATATCAAATTATTCACATATATATATACTT
Found at i:26866952 original size:22 final size:22
Alignment explanation
Indices: 26866887--26866953 Score: 61
Period size: 23 Copynumber: 3.1 Consensus size: 22
26866877 ATAATGTAAC
26866887 ATTATTTACAGAATATC-AA--
1 ATTATTTACAGAATATCAAATT
* * *
26866906 ATTATTCACATATATAT-ATACTT
1 ATTATTTACAGA-ATATCA-AATT
26866929 ATTATTTACAGAATATCAAATT
1 ATTATTTACAGAATATCAAATT
26866951 ATT
1 ATT
26866954 CACATATATA
Statistics
Matches: 36, Mismatches: 6, Indels: 9
0.71 0.12 0.18
Matches are distributed among these distances:
19 10 0.28
20 4 0.11
21 1 0.03
22 10 0.28
23 11 0.31
ACGTcount: A:0.43, C:0.10, G:0.03, T:0.43
Consensus pattern (22 bp):
ATTATTTACAGAATATCAAATT
Found at i:26866966 original size:22 final size:22
Alignment explanation
Indices: 26866899--26866966 Score: 70
Period size: 19 Copynumber: 3.2 Consensus size: 22
26866889 TATTTACAGA
26866899 ATATCAAATTATTCACATATAT
1 ATATCAAATTATTCACATATAT
** * *
26866921 ATATACTTATTATTTAC--AGA-
1 ATAT-CAAATTATTCACATATAT
26866941 ATATCAAATTATTCACATATAT
1 ATATCAAATTATTCACATATAT
26866963 ATAT
1 ATAT
26866967 ACTTACAACT
Statistics
Matches: 34, Mismatches: 8, Indels: 8
0.68 0.16 0.16
Matches are distributed among these distances:
19 9 0.26
20 4 0.12
21 4 0.12
22 8 0.24
23 9 0.26
ACGTcount: A:0.44, C:0.12, G:0.01, T:0.43
Consensus pattern (22 bp):
ATATCAAATTATTCACATATAT
Found at i:26870932 original size:23 final size:24
Alignment explanation
Indices: 26870906--26870959 Score: 76
Period size: 23 Copynumber: 2.3 Consensus size: 24
26870896 GACACACGGG
26870906 GTGCCTGAA-ATACAACACATAAA
1 GTGCCTGAATATACAACACATAAA
* *
26870929 GTGCCT-AATATACGACACATAGA
1 GTGCCTGAATATACAACACATAAA
26870952 GTGCCTGA
1 GTGCCTGA
26870960 TCGGCAAAGC
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
22 2 0.07
23 24 0.89
24 1 0.04
ACGTcount: A:0.39, C:0.22, G:0.19, T:0.20
Consensus pattern (24 bp):
GTGCCTGAATATACAACACATAAA
Found at i:26872896 original size:3 final size:3
Alignment explanation
Indices: 26872890--26872915 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
26872880 AATAAGATTA
26872890 AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AA
26872916 AACAACAAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:26876017 original size:53 final size:53
Alignment explanation
Indices: 26875918--26876076 Score: 162
Period size: 54 Copynumber: 3.0 Consensus size: 53
26875908 ATCATTTTTC
* * * **
26875918 TCTGACGCCATAGCCCAGCTGTGGTCTTATACGG-ATCGTTTGTATCACTT-TAA
1 TCTGAAGCCATAGCCCAGCTATGGTCTTATAAGGAATC-ACT-TATCACTTGTAA
**
26875971 TCTGAAGCCATAGCCCAGCTATGGTCTTATATAGGAATCACTTATCACTTGTTT
1 TCTGAAGCCATAGCCCAGCTATGGTCTTATA-AGGAATCACTTATCACTTGTAA
* * *
26876025 TCTGATGCCATAACGCAGCTATGGTCTTATACA-GATATCACTTATCACTTGT
1 TCTGAAGCCATAGCCCAGCTATGGTCTTATA-AGGA-ATCACTTATCACTTGT
26876077 TGCCATGGTC
Statistics
Matches: 91, Mismatches: 11, Indels: 7
0.83 0.10 0.06
Matches are distributed among these distances:
53 39 0.43
54 49 0.54
55 3 0.03
ACGTcount: A:0.25, C:0.23, G:0.18, T:0.35
Consensus pattern (53 bp):
TCTGAAGCCATAGCCCAGCTATGGTCTTATAAGGAATCACTTATCACTTGTAA
Found at i:26882211 original size:29 final size:28
Alignment explanation
Indices: 26882172--26882229 Score: 98
Period size: 29 Copynumber: 2.0 Consensus size: 28
26882162 ATACTCTTTA
26882172 TATTTTTAGAATTTAGTCTTTATATTTT
1 TATTTTTAGAATTTAGTCTTTATATTTT
*
26882200 TATTTTTAAGAATTTAGTCTTTTTATTTT
1 TATTTTT-AGAATTTAGTCTTTATATTTT
26882229 T
1 T
26882230 TAAATTAAAA
Statistics
Matches: 28, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
28 7 0.25
29 21 0.75
ACGTcount: A:0.24, C:0.03, G:0.07, T:0.66
Consensus pattern (28 bp):
TATTTTTAGAATTTAGTCTTTATATTTT
Found at i:26882237 original size:29 final size:29
Alignment explanation
Indices: 26882179--26882237 Score: 75
Period size: 29 Copynumber: 2.0 Consensus size: 29
26882169 TTATATTTTT
**
26882179 AGAATTTAGTCTTTATATTTTTATTTTTA
1 AGAATTTAGTCTTTATATTTTTATAATTA
*
26882208 AGAATTTAGTCTTTTTATTTTT-TAAATTA
1 AGAATTTAGTCTTTATATTTTTAT-AATTA
26882237 A
1 A
26882238 AAAATTCAAG
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
28 1 0.04
29 25 0.96
ACGTcount: A:0.31, C:0.03, G:0.07, T:0.59
Consensus pattern (29 bp):
AGAATTTAGTCTTTATATTTTTATAATTA
Found at i:26888033 original size:137 final size:138
Alignment explanation
Indices: 26887796--26888411 Score: 859
Period size: 137 Copynumber: 4.5 Consensus size: 138
26887786 TTTTATCTCT
* * * *
26887796 TTGTTTGTATTTTTAAAATATTCAGATTTTAATTTTTAAAATATATTATTTTCGTATTTTA-TTT
1 TTGTTTATATTTTTAAAATATTCGGATTTTATTTTTTAAAATATACTATTTTCGTATTTTATTTT
* * *
26887860 TTATCTTATTTTAATACATAATGTTTCAAATATATTATCTTAGTGTTTTTAAAATAACCCTAATT
66 TTATCTTATTTTAGTACATAATGTTTCAAATGTATTATCTTAGTGTTTTTTAAATAACCCTAATT
26887925 TTGTCCCA
131 TTGTCCCA
* *
26887933 TTGTTTATATTTTTAAAATTTTTGGATTTTATTTTTTAAAATATACTATTTTCGTATTTTATTTT
1 TTGTTTATATTTTTAAAATATTCGGATTTTATTTTTTAAAATATACTATTTTCGTATTTTATTTT
* * *
26887998 TTATCTTA-TTTAGTACATAATGTTTCAAATGTATTATTTTAGTGTTTTTTATATAACTCTAATT
66 TTATCTTATTTTAGTACATAATGTTTCAAATGTATTATCTTAGTGTTTTTTAAATAACCCTAATT
26888062 TTGTCCC-
131 TTGTCCCA
*
26888069 TT-TATTAT-TTGTATCTAAAATATTCGGATTTTATTTTTTAAAATATACTATTTTTGTATTTTA
1 TTGT-TTATATT-T-T-TAAAATATTCGGATTTTATTTTTTAAAATATACTATTTTCGTATTTTA
* * *
26888132 TTTTTTATCTTATTTTAGTAAATAATATTTCAAATGTATTA-CTTTAGTGTTTTTTATATAACCC
62 TTTTTTATCTTATTTTAGTACATAATGTTTCAAATGTATTATC-TTAGTGTTTTTTAAATAACCC
*
26888196 TAATTTTGTCCTTTTA
126 TAATTTTGTCC---CA
* * * * * * *
26888212 TTATTTGTATTTCTAAAATATTCGAATTTTAATTTTTAAAATATACTGTTTTCATATTTTA-TTT
1 TTGTTTATATTTTTAAAATATTCGGATTTTATTTTTTAAAATATACTATTTTCGTATTTTATTTT
*
26888276 TTATCTTATTTTAGTACATAATGTTTCAAATGTATTATTTTAGTGTTTTTTAAATAACCCTAATT
66 TTATCTTATTTTAGTACATAATGTTTCAAATGTATTATCTTAGTGTTTTTTAAATAACCCTAATT
26888341 TTGTCCCA
131 TTGTCCCA
* * *
26888349 TCGTTTATATTTTTAAAATTTTTGGATTTTATTTTTTAAAATATACTATTTTCGTATTTTATT
1 TTGTTTATATTTTTAAAATATTCGGATTTTATTTTTTAAAATATACTATTTTCGTATTTTATT
26888412 ATATTTTTTT
Statistics
Matches: 422, Mismatches: 42, Indels: 29
0.86 0.09 0.06
Matches are distributed among these distances:
135 3 0.01
136 7 0.02
137 165 0.39
138 69 0.16
139 57 0.14
140 69 0.16
141 43 0.10
143 6 0.01
144 3 0.01
ACGTcount: A:0.29, C:0.08, G:0.06, T:0.57
Consensus pattern (138 bp):
TTGTTTATATTTTTAAAATATTCGGATTTTATTTTTTAAAATATACTATTTTCGTATTTTATTTT
TTATCTTATTTTAGTACATAATGTTTCAAATGTATTATCTTAGTGTTTTTTAAATAACCCTAATT
TTGTCCCA
Found at i:26888310 original size:279 final size:275
Alignment explanation
Indices: 26887798--26888411 Score: 871
Period size: 279 Copynumber: 2.2 Consensus size: 275
26887788 TTATCTCTTT
* * * *
26887798 GTTTGTATTTTTAAAATATTCAGATTTTAATTTTTAAAATATATTATTTTCGTATTTTA-TTTTT
1 GTTTATATTTTTAAAATATTCGGATTTTATTTTTTAAAATATACTATTTTCGTATTTTATTTTTT
* *
26887862 ATCTTATTTTAATACATAATGTTTCAAATATATTATCTTAGTGTTTTTAAAATAACCCTAATTTT
66 ATCTTATTTTAATAAATAATATTTCAAATATATTATCTTAGTGTTTTTAAAATAACCCTAATTTT
* * * * * * *
26887927 GTCCCATTGTTTATATTTTTAAAATTTTTGGATTTTATTTTTTAAAATATACTATTTTCGTATTT
131 GTCCCATTATTTATATTTCTAAAATATTCGAATTTTAATTTTTAAAATATACTATTTTCATATTT
* *
26887992 TATTTTTTATCTTATTTAGTACATAATGTTTCAAATGTATTATTTTAGTGTTTTTTATATAACTC
196 TATTTTTTATCTTATTTAGTACATAATGTTTCAAATGTATTATTTTAGTGTTTTTTAAATAACCC
26888057 TAATTTTGTCCC-T-
261 TAATTTTGTCCCATC
* *
26888070 TTATTAT-TTGTATCTAAAATATTCGGATTTTATTTTTTAAAATATACTATTTTTGTATTTTATT
1 GT-TTATATT-T-T-TAAAATATTCGGATTTTATTTTTTAAAATATACTATTTTCGTATTTTATT
* * * *
26888134 TTTTATCTTATTTTAGTAAATAATATTTCAAATGTATTA-CTTTAGTGTTTTTTATATAACCCTA
62 TTTTATCTTATTTTAATAAATAATATTTCAAATATATTATC-TTAGTGTTTTTAAAATAACCCTA
* * *
26888198 ATTTTGTCCTTTTATTATTTGTATTTCTAAAATATTCGAATTTTAATTTTTAAAATATACTGTTT
126 ATTTTGTCC---CATTATTTATATTTCTAAAATATTCGAATTTTAATTTTTAAAATATACTATTT
26888263 TCATATTTTA-TTTTTATCTTATTTTAGTACATAATGTTTCAAATGTATTATTTTAGTGTTTTTT
188 TCATATTTTATTTTTTATCTTA-TTTAGTACATAATGTTTCAAATGTATTATTTTAGTGTTTTTT
26888327 AAATAACCCTAATTTTGTCCCATC
252 AAATAACCCTAATTTTGTCCCATC
* *
26888351 GTTTATATTTTTAAAATTTTTGGATTTTATTTTTTAAAATATACTATTTTCGTATTTTATT
1 GTTTATATTTTTAAAATATTCGGATTTTATTTTTTAAAATATACTATTTTCGTATTTTATT
26888412 ATATTTTTTT
Statistics
Matches: 301, Mismatches: 28, Indels: 20
0.86 0.08 0.06
Matches are distributed among these distances:
272 3 0.01
273 4 0.01
274 1 0.00
275 45 0.15
276 66 0.22
278 58 0.19
279 115 0.38
280 6 0.02
281 3 0.01
ACGTcount: A:0.29, C:0.08, G:0.07, T:0.57
Consensus pattern (275 bp):
GTTTATATTTTTAAAATATTCGGATTTTATTTTTTAAAATATACTATTTTCGTATTTTATTTTTT
ATCTTATTTTAATAAATAATATTTCAAATATATTATCTTAGTGTTTTTAAAATAACCCTAATTTT
GTCCCATTATTTATATTTCTAAAATATTCGAATTTTAATTTTTAAAATATACTATTTTCATATTT
TATTTTTTATCTTATTTAGTACATAATGTTTCAAATGTATTATTTTAGTGTTTTTTAAATAACCC
TAATTTTGTCCCATC
Found at i:26888473 original size:12 final size:12
Alignment explanation
Indices: 26888456--26888488 Score: 50
Period size: 11 Copynumber: 2.8 Consensus size: 12
26888446 TATTTTTCAT
*
26888456 TAAAAAATAGTA
1 TAAAAAATAATA
26888468 T-AAAAATAATA
1 TAAAAAATAATA
26888479 TAAAAAATAA
1 TAAAAAATAA
26888489 AATACGAAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
11 10 0.53
12 9 0.47
ACGTcount: A:0.73, C:0.00, G:0.03, T:0.24
Consensus pattern (12 bp):
TAAAAAATAATA
Found at i:26889679 original size:15 final size:16
Alignment explanation
Indices: 26889655--26889698 Score: 54
Period size: 15 Copynumber: 2.7 Consensus size: 16
26889645 TTATTCGAAG
*
26889655 TGAAATAAAAT-ATTT
1 TGAAAAAAAATAATTT
26889670 TGAAAAAAAATAATTT
1 TGAAAAAAAATAATTT
26889686 TCGAAAAATAAAT
1 T-GAAAAA-AAAT
26889699 GAAATTTATT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
15 10 0.40
16 5 0.20
17 6 0.24
18 4 0.16
ACGTcount: A:0.59, C:0.02, G:0.07, T:0.32
Consensus pattern (16 bp):
TGAAAAAAAATAATTT
Found at i:26891899 original size:10 final size:10
Alignment explanation
Indices: 26891886--26891943 Score: 73
Period size: 10 Copynumber: 5.8 Consensus size: 10
26891876 ATTTTAGGAT
* *
26891886 TTATCTTCAT
1 TTATCTTTAA
26891896 TTATCTTTAA
1 TTATCTTTAA
26891906 TTATCTTTAA
1 TTATCTTTAA
26891916 TTATCTTTAA
1 TTATCTTTAA
*
26891926 TTAT-TTGTAT
1 TTATCTT-TAA
26891936 TTATCTTT
1 TTATCTTT
26891944 TAGAATTTAA
Statistics
Matches: 43, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
9 2 0.05
10 39 0.91
11 2 0.05
ACGTcount: A:0.24, C:0.10, G:0.02, T:0.64
Consensus pattern (10 bp):
TTATCTTTAA
Found at i:26891911 original size:20 final size:20
Alignment explanation
Indices: 26891886--26891943 Score: 82
Period size: 20 Copynumber: 2.9 Consensus size: 20
26891876 ATTTTAGGAT
*
26891886 TTATCTTCATTTATCTTTAA
1 TTATCTTTATTTATCTTTAA
*
26891906 TTATCTTTAATTATCTTTAA
1 TTATCTTTATTTATCTTTAA
26891926 TTAT-TTGTATTTATCTTT
1 TTATCTT-TATTTATCTTT
26891944 TAGAATTTAA
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
19 2 0.06
20 32 0.94
ACGTcount: A:0.24, C:0.10, G:0.02, T:0.64
Consensus pattern (20 bp):
TTATCTTTATTTATCTTTAA
Found at i:26892715 original size:39 final size:39
Alignment explanation
Indices: 26892672--26892747 Score: 118
Period size: 39 Copynumber: 1.9 Consensus size: 39
26892662 CGAAATCCCA
*
26892672 ATCAAAACTTTTAACTCTGTTTTTATTTTATTT-TTTTAG
1 ATCAAAACTTTTAACTCAGTTTTT-TTTTATTTCTTTTAG
*
26892711 ATCAAAACTTTTAATTCAGTTTTTTTTTATTTCTTTT
1 ATCAAAACTTTTAACTCAGTTTTTTTTTATTTCTTTT
26892748 CCAGGTATGC
Statistics
Matches: 34, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
38 8 0.24
39 26 0.76
ACGTcount: A:0.25, C:0.11, G:0.04, T:0.61
Consensus pattern (39 bp):
ATCAAAACTTTTAACTCAGTTTTTTTTTATTTCTTTTAG
Found at i:26895722 original size:16 final size:16
Alignment explanation
Indices: 26895677--26895727 Score: 56
Period size: 16 Copynumber: 3.4 Consensus size: 16
26895667 CAATTTTTAT
*
26895677 TTTTTTATTATTACTA
1 TTTTTTATTATTATTA
26895693 TTTCTTT-TTATTATTA
1 TTT-TTTATTATTATTA
26895709 --TTTTATTATT-TTA
1 TTTTTTATTATTATTA
26895722 TTTTTT
1 TTTTTT
26895728 GGATATTAAT
Statistics
Matches: 30, Mismatches: 1, Indels: 9
0.75 0.03 0.22
Matches are distributed among these distances:
13 6 0.20
14 6 0.20
15 4 0.13
16 11 0.37
17 3 0.10
ACGTcount: A:0.20, C:0.04, G:0.00, T:0.76
Consensus pattern (16 bp):
TTTTTTATTATTATTA
Found at i:26897026 original size:96 final size:97
Alignment explanation
Indices: 26896858--26897039 Score: 260
Period size: 96 Copynumber: 1.9 Consensus size: 97
26896848 TTTAAGAATG
* * * * * *
26896858 TGTTGGGCTGAGTGACCGGGGTGAGGTGCTTGGCTGTCATCTCTCTTCGAGTCAAAAGGTTCGAT
1 TGTTGGGCTGAATAACCAGGGTGAGGTGCTTGACTGTCATCTCTCTTCGAGTCAAAAGATTCAAT
*
26896923 ATGTTCTTAAG-AAAAATAAAAATTAGGAGCA
66 ATATTCTTAAGCAAAAATAAAAATTAGGAGCA
*
26896954 TGTTGGGCTGAATAACCAGGGT-AGGGTGCTTGACTGTCATCTCTCTTCGCGTCAAAAGATTCAA
1 TGTTGGGCTGAATAACCAGGGTGA-GGTGCTTGACTGTCATCTCTCTTCGAGTCAAAAGATTCAA
*
26897018 TATATTCTTAAGCAACAATAAA
65 TATATTCTTAAGCAAAAATAAA
26897040 TAAATAAATA
Statistics
Matches: 75, Mismatches: 9, Indels: 3
0.86 0.10 0.03
Matches are distributed among these distances:
95 1 0.01
96 66 0.88
97 8 0.11
ACGTcount: A:0.29, C:0.16, G:0.25, T:0.30
Consensus pattern (97 bp):
TGTTGGGCTGAATAACCAGGGTGAGGTGCTTGACTGTCATCTCTCTTCGAGTCAAAAGATTCAAT
ATATTCTTAAGCAAAAATAAAAATTAGGAGCA
Found at i:26897741 original size:20 final size:20
Alignment explanation
Indices: 26897718--26897765 Score: 62
Period size: 20 Copynumber: 2.4 Consensus size: 20
26897708 TTATTTTCAT
26897718 TTATCTTTAATTATATT-TAA
1 TTATCTTTAATTAT-TTGTAA
* *
26897738 TTATCTTTATTTATTTGTAT
1 TTATCTTTAATTATTTGTAA
26897758 TTATCTTT
1 TTATCTTT
26897766 TAGAATTTAA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
19 2 0.08
20 23 0.92
ACGTcount: A:0.25, C:0.06, G:0.02, T:0.67
Consensus pattern (20 bp):
TTATCTTTAATTATTTGTAA
Done.