Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102776486
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2328156 characters in sequence are not A, C, G, or T
File 77 of 325
Found at i:26905250 original size:18 final size:20
Alignment explanation
Indices: 26905218--26905268 Score: 63
Period size: 19 Copynumber: 2.6 Consensus size: 20
26905208 ATATATATAA
*
26905218 ATTTTGAAAATTTTACAAA-T
1 ATTTTG-AAATTTTAAAAATT
26905238 ATTTTGAAA-TTTAAAAATT
1 ATTTTGAAATTTTAAAAATT
26905257 ATTTTG-AATTTT
1 ATTTTGAAATTTT
26905269 TTTTTTTGTA
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
18 9 0.32
19 13 0.46
20 6 0.21
ACGTcount: A:0.41, C:0.02, G:0.06, T:0.51
Consensus pattern (20 bp):
ATTTTGAAATTTTAAAAATT
Found at i:26908819 original size:20 final size:19
Alignment explanation
Indices: 26908790--26908831 Score: 57
Period size: 20 Copynumber: 2.2 Consensus size: 19
26908780 AAAAATTCAG
26908790 TATTAAAAATTAGAAAAAA
1 TATTAAAAATTAGAAAAAA
* *
26908809 TATTAAAAAATTATAAAATA
1 TATT-AAAAATTAGAAAAAA
26908829 TAT
1 TAT
26908832 AGAATTATAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
19 4 0.20
20 16 0.80
ACGTcount: A:0.64, C:0.00, G:0.02, T:0.33
Consensus pattern (19 bp):
TATTAAAAATTAGAAAAAA
Found at i:26914039 original size:16 final size:16
Alignment explanation
Indices: 26914018--26914048 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
26914008 TGAGGGCTAA
*
26914018 ATTTATTATTATACTT
1 ATTTATAATTATACTT
26914034 ATTTATAATTATACT
1 ATTTATAATTATACT
26914049 AGATTTATAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.06, G:0.00, T:0.58
Consensus pattern (16 bp):
ATTTATAATTATACTT
Found at i:26916769 original size:77 final size:76
Alignment explanation
Indices: 26916607--26916769 Score: 181
Period size: 77 Copynumber: 2.1 Consensus size: 76
26916597 CGAAGGTAAT
* * *
26916607 CTCGAGGCTCAACCCATTTTGTGAACATGAATTTGACTTTTGATAAAATGAAAAATTAAAAGGAC
1 CTCGAGGCTCAACCCATTTTGTGAACATGAATTTGACTTTTAATAAAATGAAAAATGAAAAAGAC
*
26916672 ATCAAAAATGAT
66 ATCAAAAA-GAC
* *
26916684 CTCAAGGCTCAACCCATTTT-TGAAAACA-G-ATTTGAGTTTTAATAAAATGAAAAACTGAAAAA
1 CTCGAGGCTCAACCCATTTTGTG--AACATGAATTTGACTTTTAATAAAATGAAAAA-TGAAAAA
*
26916746 GACTTCAACAGAA-AC
63 GACATCAA-A-AAGAC
26916761 CTCGAGGCT
1 CTCGAGGCT
26916770 AAACTGTAAC
Statistics
Matches: 73, Mismatches: 8, Indels: 10
0.80 0.09 0.11
Matches are distributed among these distances:
76 25 0.34
77 41 0.56
78 5 0.07
79 2 0.03
ACGTcount: A:0.42, C:0.17, G:0.15, T:0.26
Consensus pattern (76 bp):
CTCGAGGCTCAACCCATTTTGTGAACATGAATTTGACTTTTAATAAAATGAAAAATGAAAAAGAC
ATCAAAAAGAC
Found at i:26917198 original size:14 final size:15
Alignment explanation
Indices: 26917174--26917208 Score: 54
Period size: 15 Copynumber: 2.3 Consensus size: 15
26917164 TATATATATT
26917174 ACCATATAAATACTA
1 ACCATATAAATACTA
26917189 ACCATA-AAATACTA
1 ACCATATAAATACTA
26917203 ATCCAT
1 A-CCAT
26917209 GATTAAAGTA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 9 0.47
15 10 0.53
ACGTcount: A:0.51, C:0.23, G:0.00, T:0.26
Consensus pattern (15 bp):
ACCATATAAATACTA
Found at i:26918072 original size:41 final size:41
Alignment explanation
Indices: 26917876--26918075 Score: 215
Period size: 41 Copynumber: 4.9 Consensus size: 41
26917866 CTATATAAAA
* * * * *
26917876 CACCGGCATAAAGCCTGCTAGGCACAAAGCCCG-ATTCATTT
1 CACCGGCATCAAGCCTGCTAGGCATAAAGCCTGAAAT-AATT
* * * * *
26917917 CACCGGCA-CAAAGCCTGCTCGACATAAAGTCGGAATTAATT
1 CACCGGCATC-AAGCCTGCTAGGCATAAAGCCTGAAATAATT
* * *
26917958 CACCGGCATCAAGCCTGCTAGACATAAAGTCTAAAATAATT
1 CACCGGCATCAAGCCTGCTAGGCATAAAGCCTGAAATAATT
* * *
26917999 CACCGGCATTAAGCCTGCTAGGCATTAAGCCTGAAATAATC
1 CACCGGCATCAAGCCTGCTAGGCATAAAGCCTGAAATAATT
*
26918040 CACCGGCATCAAGCCTGCTAGGCATTAAGCCTGAAA
1 CACCGGCATCAAGCCTGCTAGGCATAAAGCCTGAAA
26918076 ATCTCATATA
Statistics
Matches: 138, Mismatches: 18, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
41 134 0.97
42 4 0.03
ACGTcount: A:0.33, C:0.28, G:0.19, T:0.20
Consensus pattern (41 bp):
CACCGGCATCAAGCCTGCTAGGCATAAAGCCTGAAATAATT
Found at i:26918308 original size:64 final size:63
Alignment explanation
Indices: 26918190--26918370 Score: 262
Period size: 64 Copynumber: 2.9 Consensus size: 63
26918180 GCAAACAAAC
*
26918190 ATTCGAACCACATATGT-AT-AATTTACA-ACATTAAAATTCAGCTCAAAGAA-TTTGTAACCTA
1 ATTCGAACCACATATGTAATAAAATT-CATACATT-AAATTCAGCTC-AAGAACTTTGTAACCTA
26918251 T
63 T
26918252 ATTCGAACCACATATGTAAGTAAAATTCATACATTAAATTCAGCTCAAGAACTTTGTAACCTAT
1 ATTCGAACCACATATGTAA-TAAAATTCATACATTAAATTCAGCTCAAGAACTTTGTAACCTAT
* *
26918316 ATTTGAACCACATATGTATATAAAATTCATACATTAAATACAGCTCAAGAACTTT
1 ATTCGAACCACATATGTA-ATAAAATTCATACATTAAATTCAGCTCAAGAACTTT
26918371 AAATATATAT
Statistics
Matches: 110, Mismatches: 3, Indels: 10
0.89 0.02 0.08
Matches are distributed among these distances:
62 17 0.15
63 6 0.05
64 77 0.70
65 10 0.09
ACGTcount: A:0.42, C:0.18, G:0.08, T:0.32
Consensus pattern (63 bp):
ATTCGAACCACATATGTAATAAAATTCATACATTAAATTCAGCTCAAGAACTTTGTAACCTAT
Found at i:26920152 original size:76 final size:73
Alignment explanation
Indices: 26920005--26920160 Score: 192
Period size: 76 Copynumber: 2.1 Consensus size: 73
26919995 ACTAAATGGA
* *
26920005 AAGGCTCGATCCCTTTTTGAAAACAAATTCGATTTTGATAAAAGATAATTAAAAGGACCTCGACA
1 AAGGCTCGATCCCTTTTTGAAAACAAATTCGATTTTAATAAAAGAAAATTAAAAGGACCTCGACA
26920070 AAAATCTC
66 AAAATCTC
* *
26920078 AAGGCTTGA-CCCATTTTTAGAAAACAAATTCGATTTTTAATAAAAAGAAAATTGAAAA-GATCT
1 AAGGCTCGATCCC-TTTTT-GAAAACAAATTCGA-TTTTAAT-AAAAGAAAATT-AAAAGGACCT
*
26920141 CGACAACAATCT-
61 CGACAAAAATCTC
26920153 AGAGGCTC
1 A-AGGCTC
26920161 AACACTCTTT
Statistics
Matches: 71, Mismatches: 6, Indels: 9
0.83 0.07 0.10
Matches are distributed among these distances:
72 3 0.04
73 13 0.18
74 14 0.20
75 7 0.10
76 30 0.42
77 4 0.06
ACGTcount: A:0.42, C:0.17, G:0.14, T:0.27
Consensus pattern (73 bp):
AAGGCTCGATCCCTTTTTGAAAACAAATTCGATTTTAATAAAAGAAAATTAAAAGGACCTCGACA
AAAATCTC
Found at i:26920364 original size:46 final size:46
Alignment explanation
Indices: 26920281--26920956 Score: 506
Period size: 46 Copynumber: 14.4 Consensus size: 46
26920271 AAATATCCTT
* * *
26920281 GAGAGAGGTTTGAAAATATCTCTAGGGAAAGTC-AAAAGCATCCTCAA
1 GAGAG-GGTTTGAAAATATCTCAAGAGAGA-TCTAAAAGCATCCTCAA
* * * *
26920328 GATAGAGTTTGAAAATATCTCAATAGAGATCTAAAAGCATCCTTAA
1 GAGAGGGTTTGAAAATATCTCAAGAGAGATCTAAAAGCATCCTCAA
* * * *
26920374 TAGAGGGTTTGAAAATATATCTCATA-AGAGATTTGAAAGCAT-CTTAGA
1 GAGAGGGTTTG-AAA-ATATCTCA-AGAGAGATCTAAAAGCATCCTCA-A
* * * *
26920422 GATAAGGTTTGAAAATATCTCAACATAGATCTAAAAGCATCCTCAA
1 GAGAGGGTTTGAAAATATCTCAAGAGAGATCTAAAAGCATCCTCAA
* ** *
26920468 GAGAGGGCTTGAAAATAAATCTCATAG-GAGATCTGGAAGCATCCTCGA
1 GAGAGGGTTTGAAAAT--ATCTCA-AGAGAGATCTAAAAGCATCCTCAA
* * * **
26920516 GATAGGATTTGAAAATATCTCAAGAGAGATCAAAAAGCATCCTTGA
1 GAGAGGGTTTGAAAATATCTCAAGAGAGATCTAAAAGCATCCTCAA
* * * **
26920562 GAGAGGGTTTGAAAATATATATCAAGGGAGATATAAAAGCATCCTTGA
1 GAGAGGGTTTG-AAA-ATATCTCAAGAGAGATCTAAAAGCATCCTCAA
* * * *
26920610 GGGAGGATTTGAAAATATCTCAAGGGAGATCTAAAAGTATCCTCAAA
1 GAGAGGGTTTGAAAATATCTCAAGAGAGATCTAAAAGCATCCTC-AA
* * * *
26920657 GAGAGGGTTTGAAAATATATTTCATAG-GATATCTGAAAGCATCCTCGA
1 GAGAGGGTTTG-AAA-ATATCTCA-AGAGAGATCTAAAAGCATCCTCAA
* * * * *
26920705 GA-AGGGACTCGAAAGTATCTCAAGGGAGATCTACAAA-TATCCTCAA
1 GAGAGGG-TTTGAAAATATCTCAAGAGAGATCTA-AAAGCATCCTCAA
* * * * * *
26920751 GTGAGGGTTTGAAAATATATCTCAAGAGTGATATGAAAGCATTCTCGA
1 GAGAGGGTTTG-AAA-ATATCTCAAGAGAGATCTAAAAGCATCCTCAA
* * ** * * *
26920799 GGGAGGATTT-ATAAGCATCTCAAGGGAGATCTAAAAGTATCCTTAA
1 GAGAGGGTTTGA-AAATATCTCAAGAGAGATCTAAAAGCATCCTCAA
* * * *
26920845 GAGAGGGTTTGAAAATATATCTCAAGGGAGATATGAAAGCATCCTTAA
1 GAGAGGGTTTG-AAA-ATATCTCAAGAGAGATCTAAAAGCATCCTCAA
* * * * *
26920893 GAGA-GGATTCAAAAGTATCTCAAGATAGATCTAAAAGTATCATCAA
1 GAGAGGGTTTGAAAA-TATCTCAAGAGAGATCTAAAAGCATCCTCAA
26920939 GAGAGGGTTTGAAAATAT
1 GAGAGGGTTTGAAAATAT
26920957 ATCTAAAAGC
Statistics
Matches: 496, Mismatches: 103, Indels: 61
0.75 0.16 0.09
Matches are distributed among these distances:
45 8 0.02
46 220 0.44
47 69 0.14
48 172 0.35
49 25 0.05
50 2 0.00
ACGTcount: A:0.40, C:0.13, G:0.22, T:0.25
Consensus pattern (46 bp):
GAGAGGGTTTGAAAATATCTCAAGAGAGATCTAAAAGCATCCTCAA
Found at i:26920432 original size:94 final size:94
Alignment explanation
Indices: 26920335--26920960 Score: 662
Period size: 94 Copynumber: 6.6 Consensus size: 94
26920325 CAAGATAGAG
* * * *
26920335 TTTGAAAATATCTCAATAGAGATCTAAAAGCATCCTTAATAGAGGGTTTGAAAATATATCTCATA
1 TTTGAAAATATCTCAAGAGAGATCTAAAAGTATCCTCAAGAGAGGGTTTGAAAATATATCTCA-A
* * * *
26920400 -AGAGATTTGAAAGCATCTTAGAGATAAGG-
65 GGGAGATATGAAAGCATCTTCGAGA-GAGGA
* * * * *
26920429 TTTGAAAATATCTCAACATAGATCTAAAAGCATCCTCAAGAGAGGGCTTGAAAATAAATCTCATA
1 TTTGAAAATATCTCAAGAGAGATCTAAAAGTATCCTCAAGAGAGGGTTTGAAAATATATCTCA-A
* * * *
26920494 -GGAGATCTGGAAGCATCCTCGAGATAGGA
65 GGGAGATATGAAAGCATCTTCGAGAGAGGA
* * ** *
26920523 TTTGAAAATATCTCAAGAGAGATCAAAAAGCATCCTTGAGAGAGGGTTTGAAAATATATATCAAG
1 TTTGAAAATATCTCAAGAGAGATCTAAAAGTATCCTCAAGAGAGGGTTTGAAAATATATCTCAAG
* *
26920588 GGAGATATAAAAGCATCCTT-GAGGGAGGA
66 GGAGATATGAAAGCAT-CTTCGAGAGAGGA
* *
26920617 TTTGAAAATATCTCAAGGGAGATCTAAAAGTATCCTCAAAGAGAGGGTTTGAAAATATATTTCAT
1 TTTGAAAATATCTCAAGAGAGATCTAAAAGTATCCTC-AAGAGAGGGTTTGAAAATATATCTCA-
* * *
26920682 A-GGATATCTGAAAGCATCCTCGAGA-AGGGA
64 AGGGAGATATGAAAGCATCTTCGAGAGA-GGA
* * * * *
26920712 CTCGAAAGTATCTCAAGGGAGATCTACAAA-TATCCTCAAGTGAGGGTTTGAAAATATATCTCAA
1 TTTGAAAATATCTCAAGAGAGATCTA-AAAGTATCCTCAAGAGAGGGTTTGAAAATATATCTCAA
* * *
26920776 GAGTGATATGAAAGCAT-TCTCGAGGGAGGA
65 GGGAGATATGAAAGCATCT-TCGAGAGAGGA
** * *
26920806 TTT-ATAAGCATCTCAAGGGAGATCTAAAAGTATCCTTAAGAGAGGGTTTGAAAATATATCTCAA
1 TTTGA-AAATATCTCAAGAGAGATCTAAAAGTATCCTCAAGAGAGGGTTTGAAAATATATCTCAA
*
26920870 GGGAGATATGAAAGCATCCTT-AAGAGAGGA
65 GGGAGATATGAAAGCAT-CTTCGAGAGAGGA
* * *
26920900 -TTCAAAAGTATCTCAAGATAGATCTAAAAGTATCATCAAGAGAGGGTTTGAAAATATATCT
1 TTTGAAAA-TATCTCAAGAGAGATCTAAAAGTATCCTCAAGAGAGGGTTTGAAAATATATCT
26920961 AAAAGCATCT
Statistics
Matches: 452, Mismatches: 63, Indels: 34
0.82 0.11 0.06
Matches are distributed among these distances:
93 13 0.03
94 357 0.79
95 77 0.17
96 5 0.01
ACGTcount: A:0.40, C:0.13, G:0.22, T:0.26
Consensus pattern (94 bp):
TTTGAAAATATCTCAAGAGAGATCTAAAAGTATCCTCAAGAGAGGGTTTGAAAATATATCTCAAG
GGAGATATGAAAGCATCTTCGAGAGAGGA
Found at i:26920635 original size:23 final size:25
Alignment explanation
Indices: 26920609--26920674 Score: 68
Period size: 23 Copynumber: 2.8 Consensus size: 25
26920599 AGCATCCTTG
26920609 AGGGAGGATTTGAAAATAT-CTC-A
1 AGGGAGGATTTGAAAATATCCTCAA
*
26920632 AGGGA-GATCT-AAAAGTATCCTCAA
1 AGGGAGGATTTGAAAA-TATCCTCAA
* *
26920656 AGAGAGGGTTTGAAAATAT
1 AGGGAGGATTTGAAAATAT
26920675 ATTTCATAGG
Statistics
Matches: 34, Mismatches: 4, Indels: 8
0.74 0.09 0.17
Matches are distributed among these distances:
21 4 0.12
22 7 0.21
23 8 0.24
24 5 0.15
25 6 0.18
26 4 0.12
ACGTcount: A:0.41, C:0.09, G:0.26, T:0.24
Consensus pattern (25 bp):
AGGGAGGATTTGAAAATATCCTCAA
Found at i:26920642 original size:188 final size:187
Alignment explanation
Indices: 26920315--26920960 Score: 741
Period size: 188 Copynumber: 3.4 Consensus size: 187
26920305 GGGAAAGTCA
* * * *
26920315 AAAGCATCCTCAAGATA-GAGTTTGAAAATATCTCAATAGAGATCTAAAAGCATCCTTAATAGAG
1 AAAGCATCCTCAAGATAGGA-TTTGAAAATATCTCAAGAGAGATCAAAAAGCATCCTCAAGAGAG
* **
26920379 GGTTTGAAAATATATCTCATA-AGAGATTTGAAAGCATCTTAGAGATAAGG-TTTGAAAATATCT
65 GGTTTGAAAATATATCTCA-AGAGAGATATGAAAGCATCTT-GAG-GGAGGATTTGAAAATATCT
*** * * *
26920442 CAACATAGATCTAAAAGCATCCTCAAGAGAGGGCTTGAAAATAAATCTCATAGGAGATCTG
127 CAAGGGAGATCTAAAAGTATCCTCAAGAGAGGGTTTGAAAATATATCTCATAGGAGATCTG
* * **
26920503 GAAGCATCCTCGAGATAGGATTTGAAAATATCTCAAGAGAGATCAAAAAGCATCCTTGAGAGAGG
1 AAAGCATCCTCAAGATAGGATTTGAAAATATCTCAAGAGAGATCAAAAAGCATCCTCAAGAGAGG
* * *
26920568 GTTTGAAAATATATATCAAGGGAGATATAAAAGCATCCTTGAGGGAGGATTTGAAAATATCTCAA
66 GTTTGAAAATATATCTCAAGAGAGATATGAAAGCAT-CTTGAGGGAGGATTTGAAAATATCTCAA
* *
26920633 GGGAGATCTAAAAGTATCCTCAAAGAGAGGGTTTGAAAATATATTTCATAGGATATCTG
130 GGGAGATCTAAAAGTATCCTC-AAGAGAGGGTTTGAAAATATATCTCATAGGAGATCTG
* * * * * * * *
26920692 AAAGCATCCTCGAGA-AGGGACTCGAAAGTATCTCAAGGGAGATCTACAAA-TATCCTCAAGTGA
1 AAAGCATCCTCAAGATA-GGATTTGAAAATATCTCAAGAGAGATC-AAAAAGCATCCTCAAGAGA
* * **
26920755 GGGTTTGAAAATATATCTCAAGAGTGATATGAAAGCATTCTCGAGGGAGGATTT-ATAAGCATCT
64 GGGTTTGAAAATATATCTCAAGAGAGATATGAAAGCA-TCTTGAGGGAGGATTTGA-AAATATCT
* *
26920819 CAAGGGAGATCTAAAAGTATCCTTAAGAGAGGGTTTGAAAATATATCTCA-AGGGAGATATG
127 CAAGGGAGATCTAAAAGTATCCTCAAGAGAGGGTTTGAAAATATATCTCATA-GGAGATCTG
* * * * * * *
26920880 AAAGCATCCTTAAGAGAGGA-TTCAAAAGTATCTCAAGATAGATCTAAAAGTATCATCAAGAGAG
1 AAAGCATCCTCAAGATAGGATTTGAAAA-TATCTCAAGAGAGATCAAAAAGCATCCTCAAGAGAG
26920944 GGTTTGAAAATATATCT
65 GGTTTGAAAATATATCT
26920961 AAAAGCATCT
Statistics
Matches: 393, Mismatches: 52, Indels: 26
0.83 0.11 0.06
Matches are distributed among these distances:
187 12 0.03
188 215 0.55
189 161 0.41
190 5 0.01
ACGTcount: A:0.40, C:0.13, G:0.22, T:0.26
Consensus pattern (187 bp):
AAAGCATCCTCAAGATAGGATTTGAAAATATCTCAAGAGAGATCAAAAAGCATCCTCAAGAGAGG
GTTTGAAAATATATCTCAAGAGAGATATGAAAGCATCTTGAGGGAGGATTTGAAAATATCTCAAG
GGAGATCTAAAAGTATCCTCAAGAGAGGGTTTGAAAATATATCTCATAGGAGATCTG
Found at i:26920821 original size:283 final size:282
Alignment explanation
Indices: 26920314--26920960 Score: 802
Period size: 283 Copynumber: 2.3 Consensus size: 282
26920304 AGGGAAAGTC
* * * * * *
26920314 AAAAGCATCCTCAAGATA-GAGTTTGAAAATATCTCAATAGAGATCTAAAAGCATCCTTAATAGA
1 AAAAGCATCCTTAAGAGAGGA-TTTGAAAATATCTCAAGAGAGATCTAAAAGTATCCTCAAGAGA
* * * *
26920378 GGGTTTGAAAATATATCTCATAAGAGATTTGAAAGCATCTTAGAGATAAGGTTTGAAAATATCTC
65 GGGTTTGAAAATATATCTCATAAGAGATCTGAAAGCATCCTAGAGATAAGGCTCGAAAATATCTC
* * *
26920443 AACATAGATCTAAAAGCATCCTCAAGAGAGGGCTTGAAAATAAATCTCATAGGAGATCTGGAAGC
130 AACAGAGATCTAAAAGCATCCTCAAGAGAGGGCTTGAAAATAAATCTCATAGGAGATATGAAAGC
* * *
26920508 ATCCTCGAGATAGGATTTGAAAATATCTCAAGAGAGATCAAAAAGCATCCTTGAGAGAGGGTTTG
195 ATCCTCGAGAGAGGATTTGAAAACATCTCAAGAGAGATCAAAAAGCATCCTTAAGAGAGGGTTTG
26920573 AAAATATATATCAAGGGAGATAT
260 AAAATATATATCAAGGGAGATAT
* * *
26920596 AAAAGCATCCTTGAGGGAGGATTTGAAAATATCTCAAGGGAGATCTAAAAGTATCCTCAAAGAGA
1 AAAAGCATCCTTAAGAGAGGATTTGAAAATATCTCAAGAGAGATCTAAAAGTATCCTC-AAGAGA
* * * * * *
26920661 GGGTTTGAAAATATATTTCATAGGATATCTGAAAGCATCCTCGAGA-AGGGACTCGAAAGTATCT
65 GGGTTTGAAAATATATCTCATAAGAGATCTGAAAGCATCCTAGAGATAAGG-CTCGAAAATATCT
** * * * * *
26920725 CAAGGGAGATCTACAAA-TATCCTCAAGTGAGGGTTTGAAAATATATCTCA-AGAGTGATATGAA
129 CAACAGAGATCTA-AAAGCATCCTCAAGAGAGGGCTTGAAAATAAATCTCATAG-GAGATATGAA
* * * * * *
26920788 AGCATTCTCGAGGGAGGATTT-ATAAGCATCTCAAGGGAGATCTAAAAGTATCCTTAAGAGAGGG
192 AGCATCCTCGAGAGAGGATTTGA-AAACATCTCAAGAGAGATCAAAAAGCATCCTTAAGAGAGGG
*
26920852 TTTGAAAATATATCTCAAGGGAGATAT
256 TTTGAAAATATATATCAAGGGAGATAT
* * * *
26920879 GAAAGCATCCTTAAGAGAGGA-TTCAAAAGTATCTCAAGATAGATCTAAAAGTATCATCAAGAGA
1 AAAAGCATCCTTAAGAGAGGATTTGAAAA-TATCTCAAGAGAGATCTAAAAGTATCCTCAAGAGA
26920943 GGGTTTGAAAATATATCT
65 GGGTTTGAAAATATATCT
26920961 AAAAGCATCT
Statistics
Matches: 311, Mismatches: 47, Indels: 14
0.84 0.13 0.04
Matches are distributed among these distances:
282 82 0.26
283 226 0.73
284 3 0.01
ACGTcount: A:0.40, C:0.13, G:0.21, T:0.26
Consensus pattern (282 bp):
AAAAGCATCCTTAAGAGAGGATTTGAAAATATCTCAAGAGAGATCTAAAAGTATCCTCAAGAGAG
GGTTTGAAAATATATCTCATAAGAGATCTGAAAGCATCCTAGAGATAAGGCTCGAAAATATCTCA
ACAGAGATCTAAAAGCATCCTCAAGAGAGGGCTTGAAAATAAATCTCATAGGAGATATGAAAGCA
TCCTCGAGAGAGGATTTGAAAACATCTCAAGAGAGATCAAAAAGCATCCTTAAGAGAGGGTTTGA
AAATATATATCAAGGGAGATAT
Found at i:26920917 original size:23 final size:24
Alignment explanation
Indices: 26920891--26920944 Score: 69
Period size: 23 Copynumber: 2.3 Consensus size: 24
26920881 AAGCATCCTT
26920891 AAGAGAGGAT-TCAAAAGTATC-TC
1 AAGAGAGGATCT-AAAAGTATCATC
*
26920914 AAGATA-GATCTAAAAGTATCATC
1 AAGAGAGGATCTAAAAGTATCATC
26920937 AAGAGAGG
1 AAGAGAGG
26920945 GTTTGAAAAT
Statistics
Matches: 26, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
22 12 0.46
23 13 0.50
24 1 0.04
ACGTcount: A:0.46, C:0.11, G:0.22, T:0.20
Consensus pattern (24 bp):
AAGAGAGGATCTAAAAGTATCATC
Found at i:26928347 original size:10 final size:10
Alignment explanation
Indices: 26928332--26928381 Score: 59
Period size: 10 Copynumber: 5.0 Consensus size: 10
26928322 TTAATTTAGG
26928332 ATTTAT-TTT
1 ATTTATCTTT
26928341 CATTTATCTTT
1 -ATTTATCTTT
*
26928352 AATTATCTTT
1 ATTTATCTTT
26928362 ATTTAT-TTGT
1 ATTTATCTT-T
26928372 ATTTATCTTT
1 ATTTATCTTT
26928382 TAGAATTTAA
Statistics
Matches: 35, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
9 2 0.06
10 28 0.80
11 5 0.14
ACGTcount: A:0.22, C:0.08, G:0.02, T:0.68
Consensus pattern (10 bp):
ATTTATCTTT
Found at i:26928896 original size:30 final size:30
Alignment explanation
Indices: 26928860--26928928 Score: 120
Period size: 30 Copynumber: 2.3 Consensus size: 30
26928850 CTAGCCTTTG
*
26928860 CCACCACCAACTTCACTAGCCACACTTGCT
1 CCACCACCAACTCCACTAGCCACACTTGCT
*
26928890 CCACCACCAACTCCACTAGCCACACTTGTT
1 CCACCACCAACTCCACTAGCCACACTTGCT
26928920 CCACCACCA
1 CCACCACCA
26928929 CTTGTACCTA
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
30 37 1.00
ACGTcount: A:0.28, C:0.49, G:0.06, T:0.17
Consensus pattern (30 bp):
CCACCACCAACTCCACTAGCCACACTTGCT
Found at i:26929416 original size:23 final size:23
Alignment explanation
Indices: 26929379--26929506 Score: 84
Period size: 23 Copynumber: 5.5 Consensus size: 23
26929369 TTTTTTTTGT
*
26929379 TATTAT-TATATTTCTTAATATTA
1 TATTATATATA-TTCTTAATACTA
* *
26929402 TATTATATATATTCTT-TTAATA
1 TATTATATATATTCTTAATACTA
** * *
26929424 TATTAGGTATATTCTAAATTCTA
1 TATTATATATATTCTTAATACTA
*
26929447 TATTACGTATATA-TATT-ATACTA
1 TATTA--TATATATTCTTAATACTA
* *
26929470 TTTTATGTATATATCTTTAATACTA
1 TATTATATATAT-TC-TTAATACTA
*
26929495 TATTATTTATAT
1 TATTATATATAT
26929507 ATTTTTTTTC
Statistics
Matches: 79, Mismatches: 18, Indels: 14
0.71 0.16 0.13
Matches are distributed among these distances:
21 5 0.06
22 17 0.22
23 29 0.37
24 8 0.10
25 20 0.25
ACGTcount: A:0.35, C:0.06, G:0.03, T:0.55
Consensus pattern (23 bp):
TATTATATATATTCTTAATACTA
Found at i:26929482 original size:25 final size:25
Alignment explanation
Indices: 26929444--26929586 Score: 80
Period size: 25 Copynumber: 5.7 Consensus size: 25
26929434 ATTCTAAATT
*
26929444 CTATATTACGTATATATA-TT-ATA
1 CTATATTATGTATATATATTTAATA
* *
26929467 CTATTTTATGTATATATCTTTAATA
1 CTATATTATGTATATATATTTAATA
* * *
26929492 CTATATTATTTATATATTTTTTTTCTACATG
1 CTATATTATGTATATA----TATT-TA-ATA
* *
26929523 TTATCTTATGTATATAT-TTTAAT-
1 CTATATTATGTATATATATTTAATA
* * * *
26929546 -TATATTATGTATGTATTTTTTACA
1 CTATATTATGTATATATATTTAATA
*
26929570 CTATATTATGTACATAT
1 CTATATTATGTATATAT
26929587 TTTTTTTATA
Statistics
Matches: 93, Mismatches: 16, Indels: 20
0.72 0.12 0.16
Matches are distributed among these distances:
22 14 0.15
23 19 0.20
24 4 0.04
25 33 0.35
26 2 0.02
27 1 0.01
29 3 0.03
30 2 0.02
31 15 0.16
ACGTcount: A:0.31, C:0.08, G:0.05, T:0.56
Consensus pattern (25 bp):
CTATATTATGTATATATATTTAATA
Found at i:26929542 original size:27 final size:28
Alignment explanation
Indices: 26929471--26929578 Score: 86
Period size: 27 Copynumber: 4.0 Consensus size: 28
26929461 ATTATACTAT
26929471 TTTATGTATATATCTTTAATACTATATTA
1 TTTATGTATATAT-TTTAATACTATATTA
* * ** *
26929500 TTTATATAT-TTTTTTTCTAC-ATGTTA
1 TTTATGTATATATTTTAATACTATATTA
26929526 TCTTATGTATATATTTTAAT--TATATTA
1 T-TTATGTATATATTTTAATACTATATTA
* *
26929553 TGTATGTAT-T-TTTT-ACACTATATTA
1 TTTATGTATATATTTTAATACTATATTA
26929578 T
1 T
26929579 GTACATATTT
Statistics
Matches: 62, Mismatches: 12, Indels: 14
0.70 0.14 0.16
Matches are distributed among these distances:
23 1 0.02
24 4 0.06
25 9 0.15
26 13 0.21
27 19 0.31
28 8 0.13
29 8 0.13
ACGTcount: A:0.30, C:0.06, G:0.05, T:0.59
Consensus pattern (28 bp):
TTTATGTATATATTTTAATACTATATTA
Found at i:26929574 original size:78 final size:82
Alignment explanation
Indices: 26929453--26929626 Score: 203
Period size: 78 Copynumber: 2.2 Consensus size: 82
26929443 TCTATATTAC
* * * * * *
26929453 GTATATATATTATACTATTTTATGTATATATCTTTAATACTATATTATTTATATATTTTTTTTCT
1 GTATATATTTTATACTATATTATGTATATATCTTTAACACTATATTATGTACATATTTTTTTTAT
*
26929518 A-C-ATGTTAT-CTTAT
66 ATCTATGTTATACATAT
* * * *
26929532 GTATATATTTTA-ATTATATTATGTATGTATTTTTTACACTATATTATGTACATATTTTTTTTAT
1 GTATATATTTTATACTATATTATGTATATATCTTTAACACTATATTATGTACATATTTTTTTTAT
*
26929596 ATCTATTTTATACATAT
66 ATCTATGTTATACATAT
*
26929613 GTATATATTATATA
1 GTATATATTTTATA
26929627 TATCTTAACA
Statistics
Matches: 78, Mismatches: 13, Indels: 5
0.81 0.14 0.05
Matches are distributed among these distances:
78 44 0.56
79 12 0.15
80 6 0.08
81 15 0.19
82 1 0.01
ACGTcount: A:0.32, C:0.06, G:0.05, T:0.57
Consensus pattern (82 bp):
GTATATATTTTATACTATATTATGTATATATCTTTAACACTATATTATGTACATATTTTTTTTAT
ATCTATGTTATACATAT
Found at i:26929681 original size:25 final size:24
Alignment explanation
Indices: 26929653--26929708 Score: 62
Period size: 25 Copynumber: 2.3 Consensus size: 24
26929643 GTTATATTTT
*
26929653 CACTATTTTAT-GTATATACTTCAAA
1 CACTATTATATGGTATAT--TTCAAA
*
26929678 CACTA-TATATGGTATATTTCTAA
1 CACTATTATATGGTATATTTCAAA
26929701 CACTATTA
1 CACTATTA
26929709 CTATTTATAA
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
23 10 0.37
24 6 0.22
25 11 0.41
ACGTcount: A:0.36, C:0.16, G:0.05, T:0.43
Consensus pattern (24 bp):
CACTATTATATGGTATATTTCAAA
Found at i:26940759 original size:11 final size:11
Alignment explanation
Indices: 26940743--26940776 Score: 50
Period size: 11 Copynumber: 3.0 Consensus size: 11
26940733 AGGGCATCTT
26940743 AAAAAAAGAGA
1 AAAAAAAGAGA
*
26940754 AAAAAAAGAAA
1 AAAAAAAGAGA
26940765 AAGAAAAAGAGA
1 AA-AAAAAGAGA
26940777 GGGATCAAGG
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
11 12 0.60
12 8 0.40
ACGTcount: A:0.82, C:0.00, G:0.18, T:0.00
Consensus pattern (11 bp):
AAAAAAAGAGA
Found at i:26941845 original size:88 final size:89
Alignment explanation
Indices: 26941722--26941970 Score: 296
Period size: 88 Copynumber: 2.8 Consensus size: 89
26941712 TTTCAATTTA
*
26941722 TGCTTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGCACGCCGAGGTTTAATT
1 TGCTTTT-AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGCACGCTGAGG-TT-ATT
* * **
26941787 TT-GTTTTTTCAA-TTTCTGC-TTTTC
63 TTAATTTTTTCAATTTTCTACAAATTC
* *
26941811 T-TTTTTAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGCACGCTGAGG-TATTTT
1 TGCTTTT-AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGCACGCTGAGGTTATTTT
26941874 CAATTTTTTCAATTTTTCTACAAATTC
65 -AATTTTTTCAA-TTTTCTACAAATTC
* *
26941901 TGCTTTTCAAATCAACTCATATTGCGAGA-GTGAGTTGAGCCTCAGGACACGCTGAGG-TATTTT
1 TGCTTTTAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGGCACGCTGAGGTTATTTT
26941964 CAATTTT
65 -AATTTT
26941971 CGTTTTTTAA
Statistics
Matches: 141, Mismatches: 12, Indels: 13
0.85 0.07 0.08
Matches are distributed among these distances:
85 5 0.04
86 1 0.01
87 9 0.06
88 52 0.37
89 21 0.15
90 49 0.35
91 4 0.03
ACGTcount: A:0.24, C:0.18, G:0.20, T:0.38
Consensus pattern (89 bp):
TGCTTTTAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGCACGCTGAGGTTATTTTA
ATTTTTTCAATTTTCTACAAATTC
Found at i:26941952 original size:90 final size:87
Alignment explanation
Indices: 26941722--26942066 Score: 319
Period size: 90 Copynumber: 3.9 Consensus size: 87
26941712 TTTCAATTTA
* *
26941722 TGCTTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGCACGCCGAGGTTTAATT
1 TGCTTTTC-AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGCACGCTGAGG--T-ATT
* * **
26941787 TT--GTTTTTTCAATTTCTGCTTTTC
62 TTCAATTTTTTCAATTTCTACAATTC
* *
26941811 T-TTTTTAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGCACGCTGAGGTATTTTC
1 TGCTTTT-CAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGCACGCTGAGGTATTTTC
26941875 AATTTTTTCAATTTTTCTACAAATTC
65 AATTTTTTCAA--TTTCTAC-AATTC
26941901 TGCTTTTCAAATCAACTCATATTGCGAGA-GTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTC
1 TGCTTTTCAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG-CACGCTGAGGTATTTTC
* ** *
26941965 AA--TTTTC-GTTT-TTTAATTT
65 AATTTTTTCAATTTCTACAATTC
* ****
26941984 TTCTAAAAAAATCAACTCATATTGCGAGAAGTGAGAGTGAGTTGAGCCTCAGGACACGCTGAGGT
1 TGCTTTTCAAATCAACTCATATTGC--G-A--GAG-GTGAGTTGAGCCTCAGG-CACGCTGAGGT
*
26942049 AATTTTCAATTTTGTCAA
59 -ATTTTCAATTTTTTCAA
26942067 AAATCAACTC
Statistics
Matches: 216, Mismatches: 21, Indels: 33
0.80 0.08 0.12
Matches are distributed among these distances:
83 24 0.11
84 1 0.00
85 9 0.04
86 2 0.01
87 9 0.04
88 58 0.27
89 24 0.11
90 73 0.34
91 12 0.06
93 4 0.02
ACGTcount: A:0.26, C:0.17, G:0.20, T:0.37
Consensus pattern (87 bp):
TGCTTTTCAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGCACGCTGAGGTATTTTCA
ATTTTTTCAATTTCTACAATTC
Found at i:26941998 original size:173 final size:171
Alignment explanation
Indices: 26941637--26942066 Score: 470
Period size: 173 Copynumber: 2.5 Consensus size: 171
26941627 TATTTCTATC
* *
26941637 TTTC-AAAAAAATCAACTCATATTGCGAGAGGTGAG-TGGGCCTCAGGTCAACGCTGAGGTATTT
1 TTTCTAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGAC-ACGCTGAGGTATTT
* *
26941700 TCAA---TTTC-CGTTTTTCAATTTATGCTTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTG
65 TCAATTTTTTCAAGTTTTTCAAATTATGCTTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTG
*
26941761 AGCCTCGGGCACGCCGAGGTTTAATTTTGTTTTTTCAATTTCTGCT
130 AGCCTCGGACACGCCGAGGTTTAATTTTGTTTTTTCAA--T-T-CT
**
26941807 TTTCTTTTTTAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG-CACGCTGAGGTAT
1 TTTC---TAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAT
* *
26941871 TTTCAATTTTTTCAATTTTTCTACAAATTCTGCTTTTC-AAATCAACTCATATTGCGAGA-GTGA
63 TTTCAATTTTTTCAAGTTTT-T-CAAATTATGCTTTTCAAAATCAACTCATATTGCGAGAGGTGA
*
26941934 GTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTTCGTTTTTT-AA-T-T
126 GTTGAGCCTC-GGACACGCCGAGG---TTT-AATTTT-GTTTTTTCAATTCT
26941983 TTTCTAAAAAAATCAACTCATATTGCGAGAAGTGAGAGTGAGTTGAGCCTCAGGACACGCTGAGG
1 TTTCTAAAAAAATCAACTCATATTGC--G-A--GAG-GTGAGTTGAGCCTCAGGACACGCTGAGG
*
26942048 TAATTTTCAATTTTGTCAA
60 T-ATTTTCAATTTTTTCAA
26942067 AAATCAACTC
Statistics
Matches: 223, Mismatches: 12, Indels: 39
0.81 0.04 0.14
Matches are distributed among these distances:
170 4 0.02
173 38 0.17
174 30 0.13
175 11 0.05
176 10 0.04
177 18 0.08
178 37 0.17
179 30 0.13
180 11 0.05
181 19 0.09
182 8 0.04
183 7 0.03
ACGTcount: A:0.27, C:0.17, G:0.20, T:0.36
Consensus pattern (171 bp):
TTTCTAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTT
CAATTTTTTCAAGTTTTTCAAATTATGCTTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGA
GCCTCGGACACGCCGAGGTTTAATTTTGTTTTTTCAATTCT
Found at i:26942198 original size:72 final size:73
Alignment explanation
Indices: 26942016--26942944 Score: 1008
Period size: 72 Copynumber: 12.7 Consensus size: 73
26942006 TGCGAGAAGT
* *
26942016 GAGA-GTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTTCAA--T--TTTGTC-AAAAATCAAC
1 GAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGT-ATTTTCAATTTCGTTTTTCAAAAAATCAAC
26942075 TCATATTGC
65 TCATATTGC
*
26942084 --GAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTCGTTTTTCAAAAAATCAACT
1 GAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTTCGTTTTTCAAAAAATCAACT
26942147 CATATTGC
66 CATATTGC
* * *
26942155 GAGAGGTGAGTTGAGCCTC-AGACACGCTGAGGTAATTTCAATTTTGTTTGTC-AAAAATCAACT
1 GAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTTCGTTTTTCAAAAAATCAACT
26942218 CATATTGC
66 CATATTGC
* *
26942226 GAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTCTGTCTTT-AAAAAATC-AC
1 GAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTTC-GTTTTTCAAAAAATCAAC
26942289 TCATATTGC
65 TCATATTGC
*
26942298 GAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTC-TTTTTCAAAAAATCAACT
1 GAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTTCGTTTTTCAAAAAATCAACT
26942362 CATATTGC
66 CATATTGC
* * *
26942370 GATAGGTGAGTTGAACCTCAAG--ACGCTGAGGTAATTTCAATTT-G-TTTTC-AAAAATCAACT
1 GAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTTCGTTTTTCAAAAAATCAACT
26942430 CATATTGC
66 CATATTGC
* *
26942438 GAGAGGTGAGTTGAGCCTCAAGA-ACGCTGAGGTATTTTCAATTT-TTGTTTTAAAAAAATC-AC
1 GAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTTCGT-TTTTCAAAAAATCAAC
26942500 TCATATTGC
65 TCATATTGC
*
26942509 GAGAGGTGAGTTGA-CCTCAAGACACGTTGAGGTATTTTCAATTTCTGTTTTTCAAAAAAATCAA
1 GAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTTC-GTTTTTC-AAAAAATCAA
26942573 CTCATATTGC
64 CTCATATTGC
* * * *
26942583 GAGAGGTGAGTTGAACCTCAAG--ACGCTGAGGTAATTTCAATTTTGTTTGTC-AAAAATCAACT
1 GAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTTCGTTTTTCAAAAAATCAACT
26942645 C--ATTGC
66 CATATTGC
*
26942651 GAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTC-TGTTTTCAAAAAAAATC-
1 GAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTTCGT-TTTTC--AAAAAATCA
26942714 ACTCATATTGC
63 ACTCATATTGC
* * *
26942725 GAGAGGTGAGTTGAACCTCAAG--ACGCTGA-GTGTTTTC-ATTTCTGTTCTTCAATTTTGTTTT
1 GAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTTC-GTTTTTCAA---------
*
26942786 CAAAA-AATCACTCATATTGC
56 -AAAATCA--ACTCATATTGC
* * ** *
26942806 GAGTGGTGAGTTGAGCCTTGACTCACACGCTGAGGTATTTTCAAATTCTGTTTTTCAAATTTTTT
1 GAGAGGTGAGTTGAGCC-TCA-AGACACGCTGAGGTATTTTCAATTTC-GTTTTTC--A------
26942871 TCCAAAAATCAACTCATATTGC
55 ---AAAAATCAACTCATATTGC
* * * *
26942893 GAGAGGTGAGTTCAGCCTCAGGACACGCTGAGATATTTTCAATTTCTTTTTT
1 GAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTTCGTTTTT
26942945 TTCAATTTAT
Statistics
Matches: 740, Mismatches: 56, Indels: 114
0.81 0.06 0.13
Matches are distributed among these distances:
66 10 0.01
67 27 0.04
68 66 0.09
69 28 0.04
70 76 0.10
71 125 0.17
72 168 0.23
73 63 0.09
74 51 0.07
75 7 0.01
79 4 0.01
81 26 0.04
82 2 0.00
84 5 0.01
85 29 0.04
86 9 0.01
87 37 0.05
88 4 0.01
89 2 0.00
98 1 0.00
ACGTcount: A:0.29, C:0.17, G:0.20, T:0.34
Consensus pattern (73 bp):
GAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTTCGTTTTTCAAAAAATCAACT
CATATTGC
Found at i:26942256 original size:144 final size:144
Alignment explanation
Indices: 26941909--26942937 Score: 1149
Period size: 144 Copynumber: 6.9 Consensus size: 144
26941899 TCTGCTTTTC
* *
26941909 AAATCAACTCATATTGCGAGA-GTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTTCG
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAA-TTTCG
26941973 TTTTTTAATTTTTCTAAAAAAATCAACTCATATTGCGAGAAGTGAGAGTGAGTTGAGCCTCAGGA
65 --------TTTTTC-AAAAAAATCAACTCATATTGC--G-A--GAG-GTGAGTTGAGCCTCA-GA
26942038 CACGCTGAGGTAATTTTCAATTTTG---TCAA
114 CACGCTGAGGT-ATTTTCAATTTTGTTTTCAA
26942067 AAATCAACTCATATTGC--GAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTCGT
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTCGT
*
26942130 TTTTC-AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGACACGCTGAGGTAATTTC
66 TTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGACACGCTGAGGTATTTTC
26942194 AATTTTGTTTGTCAA
131 AATTTTGTTT-TCAA
26942209 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTCTG
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTC-G
* *
26942274 TCTTT--AAAAAATC-ACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTT
65 TTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-AGACACGCTGAGGTATTT
26942336 TCAATTTCT-TTTTCAAA
129 TCAATTT-TGTTTTC-AA
* * * *
26942353 AAATCAACTCATATTGCGATAGGTGAGTTGAACCTCAAG--ACGCTGAGGTAATTTCAATTT-G-
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTCGT
26942414 TTTTC--AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGA-ACGCTGAGGTATTTT
66 TTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-AGACACGCTGAGGTATTTT
*
26942476 CAATTTTTGTTTTAAAA
130 CAA-TTTTGTTTT-CAA
26942493 AAATC-ACTCATATTGCGAGAGGTGAGTTGA-CCTCAAGACACGTTGAGGTATTTTCAATTTCTG
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTC-G
* * *
26942556 TTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCA-AGACGCTGAGGTAATTT
65 TTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGACACGCTGAGGTATTTT
26942620 CAATTTTGTTTGTCAA
130 CAATTTTGTTT-TCAA
26942636 AAATCAACTC--ATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTC-T
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTCGT
* *
26942698 GTTTTCAAAAAAAATC-ACTCATATTGCGAGAGGTGAGTTGAACCTCA-AGACGCTGAGTGTTTT
66 -TTTTC-AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGACACGCTGAG-G---T
26942761 CATTTCTGTTCTTCAATTTTGTTTTCAAA
125 -A------TT-TTCAATTTTGTTTTC-AA
* * ** * *
26942790 AAATC-ACTCATATTGCGAGTGGTGAGTTGAGCCTTGACTCACACGCTGAGGTATTTTCAAATTC
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCC-TCA-AGACACGTTGAGGTATTTTCAATTTC
*
26942854 TGTTTTTCAAATTTTTTTCCAAAAATCAACTCATATTGCGAGAGGTGAGTTCAGCCTCAGGACAC
64 -GTTTTTC-AA---------AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCA-GACAC
*
26942919 GCTGAGATATTTTCAATTT
117 GCTGAGGTATTTTCAATTT
26942938 CTTTTTTTTC
Statistics
Matches: 781, Mismatches: 30, Indels: 120
0.84 0.03 0.13
Matches are distributed among these distances:
138 19 0.02
139 65 0.08
140 83 0.11
141 4 0.01
142 106 0.14
143 95 0.12
144 141 0.18
145 43 0.06
146 21 0.03
147 1 0.00
148 6 0.01
153 7 0.01
154 20 0.03
155 21 0.03
156 9 0.01
157 57 0.07
158 33 0.04
159 3 0.00
165 1 0.00
166 1 0.00
167 7 0.01
168 29 0.04
170 9 0.01
ACGTcount: A:0.30, C:0.17, G:0.20, T:0.33
Consensus pattern (144 bp):
AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTCGT
TTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGACACGCTGAGGTATTTTC
AATTTTGTTTTCAA
Found at i:26942615 original size:283 final size:284
Alignment explanation
Indices: 26941909--26942943 Score: 1165
Period size: 283 Copynumber: 3.5 Consensus size: 284
26941899 TCTGCTTTTC
*
26941909 AAATCAACTCATATTGCGAGA-GTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTTCG
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAA-TTTC-
* *
26941973 TTTTTTAATTTTTCTAAAAAAATCAACTCATATTGCGAGAAGTGAGAGTGAGTTGAGCCTCAGGA
64 -----T-GTTTTTCAAAAAAAATCAACTCATATTGC--G-A--GAG-GTGAGTTGAGCCTCA-GA
*
26942038 CACGCTGAGGTAATTTTCAA--TTTTGTCAAAAATCAACTCATATTGCG-AGGTGAGTTGAGCCT
116 CACGCTGAGGT-ATTTTCAATTTTTTTTCAAAAATCAACTCATATTGCGAAGGTGAGTTGAGCCT
26942100 CAAGACACGTTGAGGTATTTTCAATTTCGTTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAG
180 CAAGA-ACGTTGAGGTATTTTCAATTT-G-TTTTCAAAAAATCAACTCATATTGCGAGAGGTGAG
* *
26942165 TTGAGCCTC-AGACACGCTGAGGTAATTTCAATTTTGTTTGTCAA
242 TTGAGCCTCAAGA-ACGCTGAGGTATTTTCAATTTTGTTT-TAAA
*
26942209 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTCTG
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTTCTG
* *
26942274 TCTTT---AAAAAATC-ACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATT
66 TTTTTCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-AGACACGCTGAGGTATT
* *
26942335 TTCAATTTCTTTTTCAAAAAATCAACTCATATTGCGATAGGTGAGTTGAACCTCAAG-ACGCTGA
130 TTCAATTT-TTTTTC-AAAAATCAACTCATATTGCGA-AGGTGAGTTGAGCCTCAAGAACGTTGA
*
26942399 GGTAATTTCAATTTGTTTTC-AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGAAC
192 GGTATTTTCAATTTGTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGAAC
26942463 GCTGAGGTATTTTCAATTTTTGTTTTAAAA
257 GCTGAGGTATTTTCAA-TTTTGTTTT-AAA
*
26942493 AAATC-ACTCATATTGCGAGAGGTGAGTTGA-CCTCAAGACACGTTGAGGTATTTTCAATTTCTG
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTTCTG
* * *
26942556 TTTTTC-AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCA-AGACGCTGAGGTAATT
66 TTTTTCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGACACGCTGAGGTATTT
26942619 TCAATTTTGTTTGTCAAAAATCAACTC--ATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGA
131 TCAATTTT-TTT-TCAAAAATCAACTCATATTGCGA-AGGTGAGTTGAGCCTCAAGA-ACGTTGA
*
26942682 GGTATTTTCAATTTCTGTTTTCAAAAAAAATC-ACTCATATTGCGAGAGGTGAGTTGAACCTCAA
192 GGTATTTTCAA-TT-TGTTTTC--AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAA
26942746 G-ACGCTGAGTGTTTTCATTTCTGTTCTTCAATTTTGTTTTCAAA
253 GAACGCTGAG-G---T-A------TT-TTCAATTTTGTTTT-AAA
* * ** *
26942790 AAATC-ACTCATATTGCGAGTGGTGAGTTGAGCCTTGACTCACACGCTGAGGTATTTTCAAATTC
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCC-TCA-AGACACGCTGAGGTATTTTCAATTTC
*
26942854 TGTTTTTCAAATTTTTTTCCAAAAATCAACTCATATTGCGAGAGGTGAGTTCAGCCTCAGGACAC
64 TGTTTTTCAAA---------AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCA-GACAC
*
26942919 GCTGAGATATTTTCAATTTCTTTTT
119 GCTGAGGTATTTTCAATTT-TTTTT
26942944 TTTCAATTTA
Statistics
Matches: 651, Mismatches: 33, Indels: 91
0.84 0.04 0.12
Matches are distributed among these distances:
281 25 0.04
282 46 0.07
283 158 0.24
284 41 0.06
285 42 0.06
286 48 0.07
287 34 0.05
288 25 0.04
289 11 0.02
290 9 0.01
291 1 0.00
293 4 0.01
294 1 0.00
297 43 0.07
298 7 0.01
299 2 0.00
300 55 0.08
301 37 0.06
310 37 0.06
311 1 0.00
312 23 0.04
313 1 0.00
ACGTcount: A:0.30, C:0.17, G:0.20, T:0.34
Consensus pattern (284 bp):
AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTTCTG
TTTTTCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGACACGCTGAGGTATTT
TCAATTTTTTTTCAAAAATCAACTCATATTGCGAAGGTGAGTTGAGCCTCAAGAACGTTGAGGTA
TTTTCAATTTGTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGAACGCTG
AGGTATTTTCAATTTTGTTTTAAA
Found at i:26942992 original size:89 final size:84
Alignment explanation
Indices: 26942686--26943250 Score: 423
Period size: 85 Copynumber: 6.5 Consensus size: 84
26942676 CGTTGAGGTA
* *
26942686 TTTTCAATTTCTGTTTTCAAAAAAAATCACTCATATTGCGAGAGGTGAGTTGAACCTCA-AGACG
1 TTTTCAATTT-TGTTTTC--AAAAAATCACTCATATTGCGAGAGGTGAGTTGAGCCTCAGACACG
*
26942750 CTGA-GTGTTTTC-ATTTCTGT
63 CTGAGGTATTTTCAATTTCTGT
* * **
26942770 TCTTCAATTTTGTTTTCAAAAAATCACTCATATTGCGAGTGGTGAGTTGAGCCTTGACTCACACG
1 TTTTCAATTTTGTTTTCAAAAAATCACTCATATTGCGAGAGGTGAGTTGAGCC-T--CAGACACG
*
26942835 CTGAGGTATTTTCAAATTCTGT
63 CTGAGGTATTTTCAATTTCTGT
* * *
26942857 TTTTCAAATTT-TTTTCCAAAAATCAACTCATATTGCGAGAGGTGAGTTCAGCCTCAGGACACGC
1 TTTTCAATTTTGTTTTCAAAAAATC-ACTCATATTGCGAGAGGTGAGTTGAGCCTCA-GACACGC
* *
26942921 TGAGATATTTTCAATTTCTTTT
64 TGAGGTATTTTCAATTTC-TGT
* *
26942943 TTTTCAATTTATGTTTGTCAAAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCAGTCAAC
1 TTTTCAATTT-TGTTT-TCAAAAAATC-ACTCATATTGCGAGAGGTGAGTTGAGCCTCAGAC-AC
* * *
26943008 GCCGAGGTATTTTCAATTGATTATTTTATTT
62 GCTGAGGTATTTTC-----A--A-TTTCTGT
* * * * * *
26943039 TTTTTAATTATGCTTTGC-AAAAATCACTCATATTACGAGAGGTGAGTTGAGCCTCGGGTCACAT
1 TTTTCAATTTTG-TTTTCAAAAAATCACTCATATTGCGAGAGGTGAGTTGAGCCTC-AG--ACAC
* * **
26943103 ACCGAGGTATTTTCAAAATCTGT
62 GCTGAGGTATTTTCAATTTCTGT
* * ** *
26943126 TTTACAAATTTTGTTTT--AAAAATCAACT-ATA-TGCGAGAAGTGAGTTGAGCCTTGGCTCACG
1 TTTTC-AATTTTGTTTTCAAAAAATC-ACTCATATTGCGAGAGGTGAGTTGAGCCTCAG-ACAC-
*
26943187 TGCTGAGCTATTTTCAATTTCTGT
62 -GCTGAGGTATTTTCAATTTCTGT
* * * *
26943211 TTTT-AATGTTAGTTTT-AAAGAGTCAATTCATATTGCGAGA
1 TTTTCAAT-TTTGTTTTCAAAAAATC-ACTCATATTGCGAGA
26943251 AATAAGTTAA
Statistics
Matches: 391, Mismatches: 57, Indels: 63
0.77 0.11 0.12
Matches are distributed among these distances:
81 34 0.09
82 1 0.00
83 13 0.03
84 20 0.05
85 78 0.20
86 44 0.11
87 62 0.16
88 12 0.03
89 53 0.14
90 1 0.00
93 28 0.07
94 9 0.02
95 17 0.04
96 16 0.04
97 3 0.01
ACGTcount: A:0.28, C:0.16, G:0.18, T:0.38
Consensus pattern (84 bp):
TTTTCAATTTTGTTTTCAAAAAATCACTCATATTGCGAGAGGTGAGTTGAGCCTCAGACACGCTG
AGGTATTTTCAATTTCTGT
Found at i:26943085 original size:93 final size:99
Alignment explanation
Indices: 26942939--26943118 Score: 257
Period size: 93 Copynumber: 1.9 Consensus size: 99
26942929 TTTCAATTTC
*
26942939 TTTTTTTTCAATTTATGTTTGTCAAAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTC-AG
1 TTTTTTTTCAATTTATGTTTGTCAAAAAATCAACTCATATTACAAGAGGTGAGTTGAGCCTCGAG
*
26943003 TCA-ACGCCGAGGTATTTTCAATTGATTATTTTA
66 TCACACACCGAGGTATTTTCAATTGATTATTTTA
* *
26943036 TTTTTTTT-AA-TTATGCTTTG-C-AAAAATC-ACTCATATTACGAGAGGTGAGTTGAGCCTCGG
1 TTTTTTTTCAATTTATG-TTTGTCAAAAAATCAACTCATATTACAAGAGGTGAGTTGAGCCTCGA
*
26943096 GTCACATACCGAGGTATTTTCAA
65 GTCACACACCGAGGTATTTTCAA
26943119 AATCTGTTTT
Statistics
Matches: 75, Mismatches: 5, Indels: 8
0.85 0.06 0.09
Matches are distributed among these distances:
93 28 0.37
94 11 0.15
95 22 0.29
96 6 0.08
97 8 0.11
ACGTcount: A:0.28, C:0.16, G:0.18, T:0.38
Consensus pattern (99 bp):
TTTTTTTTCAATTTATGTTTGTCAAAAAATCAACTCATATTACAAGAGGTGAGTTGAGCCTCGAG
TCACACACCGAGGTATTTTCAATTGATTATTTTA
Found at i:26943910 original size:28 final size:28
Alignment explanation
Indices: 26943869--26943954 Score: 126
Period size: 26 Copynumber: 3.2 Consensus size: 28
26943859 GCCTTTGCCA
26943869 CACCA-ACTCCACTAGCCACACTTGCTC
1 CACCACACTCCACTAGCCACACTTGCTC
26943896 CACCACACTCCACTAGCCACAC-TGCTC
1 CACCACACTCCACTAGCCACACTTGCTC
* *
26943923 CACC-TACTCCACTAGCCACACTT-ATC
1 CACCACACTCCACTAGCCACACTTGCTC
26943949 CACCAC
1 CACCAC
26943955 CACTGTACTA
Statistics
Matches: 53, Mismatches: 3, Indels: 6
0.85 0.05 0.10
Matches are distributed among these distances:
26 22 0.42
27 15 0.28
28 16 0.30
ACGTcount: A:0.27, C:0.50, G:0.06, T:0.17
Consensus pattern (28 bp):
CACCACACTCCACTAGCCACACTTGCTC
Found at i:26944448 original size:11 final size:11
Alignment explanation
Indices: 26944420--26944452 Score: 50
Period size: 11 Copynumber: 3.0 Consensus size: 11
26944410 TATTATTATA
26944420 TTTTA-ATATT
1 TTTTATATATT
26944430 TTTATATATATT
1 TTT-TATATATT
26944442 TTTTATATATT
1 TTTTATATATT
26944453 AGGTTATTTC
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
10 3 0.14
11 10 0.48
12 8 0.38
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (11 bp):
TTTTATATATT
Found at i:26946022 original size:19 final size:18
Alignment explanation
Indices: 26945995--26946030 Score: 54
Period size: 19 Copynumber: 1.9 Consensus size: 18
26945985 TATTCTTCAT
*
26945995 TTTAATTTTCGTAATTTA
1 TTTAATTTTCGAAATTTA
26946013 TTTAATTTTTCGAAATTT
1 TTTAA-TTTTCGAAATTT
26946031 CAATTCAACT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 5 0.31
19 11 0.69
ACGTcount: A:0.28, C:0.06, G:0.06, T:0.61
Consensus pattern (18 bp):
TTTAATTTTCGAAATTTA
Found at i:26950435 original size:9 final size:9
Alignment explanation
Indices: 26950414--26950501 Score: 50
Period size: 9 Copynumber: 10.3 Consensus size: 9
26950404 ACTTTTCTTA
26950414 ATTTTA-TT
1 ATTTTATTT
26950422 A-TTTATTT
1 ATTTTATTT
26950430 ATTTTATTT
1 ATTTTATTT
*
26950439 A--TTA-GT
1 ATTTTATTT
*
26950445 A-TTTATTC
1 ATTTTATTT
26950453 ATTTTATTT
1 ATTTTATTT
26950462 CATTTTA-TT
1 -ATTTTATTT
*
26950471 AGTATTA-TT
1 A-TTTTATTT
26950480 ATTTTTATTT
1 A-TTTTATTT
26950490 -TGTTTATTT
1 AT-TTTATTT
26950499 ATT
1 ATT
26950502 ACTTTAATTT
Statistics
Matches: 63, Mismatches: 7, Indels: 19
0.71 0.08 0.21
Matches are distributed among these distances:
6 2 0.03
7 10 0.16
8 7 0.11
9 35 0.56
10 9 0.14
ACGTcount: A:0.24, C:0.02, G:0.03, T:0.70
Consensus pattern (9 bp):
ATTTTATTT
Found at i:26950466 original size:28 final size:28
Alignment explanation
Indices: 26950418--26950489 Score: 87
Period size: 28 Copynumber: 2.6 Consensus size: 28
26950408 TTCTTAATTT
* *
26950418 TATTATT-TATTTATTTTA-TTTATTAG
1 TATTATTATTTTTATTTCATTTTATTAG
26950444 TATTTATTCA-TTTTATTTCATTTTATTAG
1 TA-TTATT-ATTTTTATTTCATTTTATTAG
26950473 TATTATTATTTTTATTT
1 TATTATTATTTTTATTT
26950490 TGTTTATTTA
Statistics
Matches: 39, Mismatches: 2, Indels: 8
0.80 0.04 0.16
Matches are distributed among these distances:
26 2 0.05
27 6 0.15
28 21 0.54
29 10 0.26
ACGTcount: A:0.25, C:0.03, G:0.03, T:0.69
Consensus pattern (28 bp):
TATTATTATTTTTATTTCATTTTATTAG
Found at i:26950470 original size:23 final size:23
Alignment explanation
Indices: 26950417--26950470 Score: 74
Period size: 23 Copynumber: 2.3 Consensus size: 23
26950407 TTTCTTAATT
*
26950417 TTATTATTTATTTATTTTATTTA
1 TTATTATTTATTCATTTTATTTA
*
26950440 TTAGTATTTATTCATTTTATTTCA
1 TTATTATTTATTCATTTTATTT-A
26950464 TT-TTATT
1 TTATTATT
26950471 AGTATTATTA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
23 24 0.89
24 3 0.11
ACGTcount: A:0.24, C:0.04, G:0.02, T:0.70
Consensus pattern (23 bp):
TTATTATTTATTCATTTTATTTA
Found at i:26950489 original size:23 final size:23
Alignment explanation
Indices: 26950414--26950490 Score: 63
Period size: 23 Copynumber: 3.2 Consensus size: 23
26950404 ACTTTTCTTA
26950414 ATTTTATTA-T-TTATT-TATTTT
1 ATTTTATTAGTATTATTAT-TTTT
26950435 A-TTTATTAGTATTTATTCATTTTATTT
1 ATTTTATTAGTA-TTATT-A--TT-TTT
26950462 CATTTTATTAGTATTATTATTTTT
1 -ATTTTATTAGTATTATTATTTTT
26950486 ATTTT
1 ATTTT
26950491 GTTTATTTAT
Statistics
Matches: 46, Mismatches: 0, Indels: 18
0.72 0.00 0.28
Matches are distributed among these distances:
20 7 0.15
21 2 0.04
23 10 0.22
24 3 0.07
25 2 0.04
26 1 0.02
27 5 0.11
28 6 0.13
29 10 0.22
ACGTcount: A:0.25, C:0.03, G:0.03, T:0.70
Consensus pattern (23 bp):
ATTTTATTAGTATTATTATTTTT
Found at i:26958204 original size:14 final size:13
Alignment explanation
Indices: 26958182--26958226 Score: 63
Period size: 13 Copynumber: 3.4 Consensus size: 13
26958172 CGCCGAGGTA
26958182 TTTTTAATTTCTG
1 TTTTTAATTTCTG
26958195 TTTTTCAATTTCTG
1 TTTTT-AATTTCTG
* *
26958209 CTTTTAATTTCTA
1 TTTTTAATTTCTG
26958222 TTTTT
1 TTTTT
26958227 TAAAAATCAA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
13 16 0.57
14 12 0.43
ACGTcount: A:0.16, C:0.11, G:0.04, T:0.69
Consensus pattern (13 bp):
TTTTTAATTTCTG
Found at i:26958213 original size:87 final size:89
Alignment explanation
Indices: 26958039--26958213 Score: 239
Period size: 87 Copynumber: 2.0 Consensus size: 89
26958029 ATCTTTCAAA
* * *
26958039 AAAAATCAACTCATATTGCGAGAAGTGAGTTGGGCCTCAGGTCACACGCTGAGGTATTTTCAATT
1 AAAAATCAACTCATATTGCGAGAAGTGAGCTGAGCCTCAGGTCACACGCCGAGGTATTTTCAATT
26958104 CCGTTTTTTCAATTTATGCTTTTC
66 CCGTTTTTTCAATTTATGCTTTTC
* ** *
26958128 AAAAATCAACTCATATTGCGAGAGGTGAGCTGAGCCTC-GG-GGCACGCCGAGGTATTTTTAATT
1 AAAAATCAACTCATATTGCGAGAAGTGAGCTGAGCCTCAGGTCACACGCCGAGGTATTTTCAATT
* *
26958191 TC-TGTTTTTCAATTTCTGCTTTT
66 CCGT-TTTTTCAATTTATGCTTTT
26958214 AATTTCTATT
Statistics
Matches: 76, Mismatches: 9, Indels: 4
0.85 0.10 0.04
Matches are distributed among these distances:
86 1 0.01
87 38 0.50
88 2 0.03
89 35 0.46
ACGTcount: A:0.25, C:0.19, G:0.21, T:0.36
Consensus pattern (89 bp):
AAAAATCAACTCATATTGCGAGAAGTGAGCTGAGCCTCAGGTCACACGCCGAGGTATTTTCAATT
CCGTTTTTTCAATTTATGCTTTTC
Found at i:26958217 original size:13 final size:13
Alignment explanation
Indices: 26958183--26958220 Score: 58
Period size: 14 Copynumber: 2.8 Consensus size: 13
26958173 GCCGAGGTAT
*
26958183 TTTTAATTTCTGT
1 TTTTAATTTCTGC
26958196 TTTTCAATTTCTGC
1 TTTT-AATTTCTGC
26958210 TTTTAATTTCT
1 TTTTAATTTCT
26958221 ATTTTTTAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
13 11 0.48
14 12 0.52
ACGTcount: A:0.16, C:0.13, G:0.05, T:0.66
Consensus pattern (13 bp):
TTTTAATTTCTGC
Found at i:26958227 original size:14 final size:13
Alignment explanation
Indices: 26958182--26958229 Score: 51
Period size: 14 Copynumber: 3.5 Consensus size: 13
26958172 CGCCGAGGTA
26958182 TTTTTAATTTCTGT
1 TTTTTAATTTCT-T
* *
26958196 TTTTCAATTTCTG
1 TTTTTAATTTCTT
*
26958209 CTTTTAATTTCTAT
1 TTTTTAATTTCT-T
26958223 TTTTTAA
1 TTTTTAA
26958230 AAATCAACTC
Statistics
Matches: 27, Mismatches: 6, Indels: 2
0.77 0.17 0.06
Matches are distributed among these distances:
13 10 0.37
14 17 0.63
ACGTcount: A:0.19, C:0.10, G:0.04, T:0.67
Consensus pattern (13 bp):
TTTTTAATTTCTT
Found at i:26958291 original size:100 final size:100
Alignment explanation
Indices: 26958123--26958398 Score: 351
Period size: 100 Copynumber: 2.8 Consensus size: 100
26958113 CAATTTATGC
* * * * *
26958123 TTTTCAAAAATCAACTCATATTGCGAGAGGTGAGCTGAGCCTCGGGGCACGCCGAGGTATTTTTA
1 TTTTTAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCA
** * *
26958188 ATTTCTGTTTTTCAATTTCTG-CTTTTAATTTCTAT
66 ATTTCTGTTTTTCAATTTCTGCCTTACAAATTCT-G
*
26958223 TTTTTAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGGGCACGCTGAGGTATTTTCA
1 TTTTTAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCA
*
26958288 ATTTCTGTTTTTCAATTTTTGCCTTACAAATTCTG
66 ATTTCTGTTTTTCAATTTCTGCCTTACAAATTCTG
* * * * * * *
26958323 CTTTT-CAAATCAACTCATATTGCGAGAAGTGAGTTAACCCTCAGGACACACTGAGGTATTTTCA
1 TTTTTAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCA
26958387 ATTT-TCGTTTTT
66 ATTTCT-GTTTTT
26958399 TTAATTTATG
Statistics
Matches: 155, Mismatches: 19, Indels: 5
0.87 0.11 0.03
Matches are distributed among these distances:
98 1 0.01
99 62 0.40
100 83 0.54
101 9 0.06
ACGTcount: A:0.25, C:0.18, G:0.18, T:0.39
Consensus pattern (100 bp):
TTTTTAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCA
ATTTCTGTTTTTCAATTTCTGCCTTACAAATTCTG
Found at i:26958592 original size:73 final size:73
Alignment explanation
Indices: 26958396--26959219 Score: 1028
Period size: 73 Copynumber: 11.3 Consensus size: 73
26958386 AATTTTCGTT
* * * * * *
26958396 TTTTTAATTTATGTTTCTAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGACAT
1 TTTTCAATTTCTGTTT-TCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACAC
26958461 GCTGAGGTA
65 GCTGAGGTA
* * * *
26958470 ATTTCAA-TT-T-TTGTC-AAAACTCAACTCATATTGCAAGAGGTGAGTTGAGCCTCAAGACACG
1 TTTTCAATTTCTGTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACG
*
26958531 TTGAGGTA
66 CTGAGGTA
* * *
26958539 TTTTCAATTTCAGTTTTCAAAAAATCAACTCATATTGCGATAGGTGAGTTGAGCCTCAGGACACG
1 TTTTCAATTTCTGTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACG
*
26958604 CTGTGGTA
66 CTGAGGTA
* *
26958612 ATTTCAATTTTTGTTTGTC-AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACAC
1 TTTTCAATTTCTGTTT-TCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACAC
*
26958676 GTTGAGGTA
65 GCTGAGGTA
* * *
26958685 TTTTCAATTTCTGTCTTTTAAAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAACCTCAAGACA
1 TTTTCAATTTCTG--TTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACA
*
26958750 CGTTGAGGTA
64 CGCTGAGGTA
* *
26958760 -TTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGATAGGTGAGTTGAACCTCAAG--A
1 TTTTCAATTTCTG-TTTTC-AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACA
26958822 CGCTGAGGTA
64 CGCTGAGGTA
* * * *
26958832 ATTTCAATTTTTGTTTGTC-AAAAATCAACTTATATTGCGAGAGGTGAGTTGAGCCTCAAGATAC
1 TTTTCAATTTCTGTTT-TCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACAC
26958896 GCTGAGGTA
65 GCTGAGGTA
* * * *
26958905 TTTTCAATTTCTGTCTTTAAAAAAATCAGCTCATATTGCAAGAGGTGAGTTGAACCTCAAGACAC
1 TTTTCAATTTCTGT-TTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACAC
*
26958970 GTTGAGGTA
65 GCTGAGGTA
* *
26958979 TTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGATAGGTGAGTTGAACCTCAAG--A
1 TTTTCAATTTCTG-TTTTC-AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACA
26959042 CGCTGAGGTA
64 CGCTGAGGTA
* * *
26959052 ATTTCAATTTTTGTTTGTC-AAAAATCAACTCATATTGTGAGAGGTGAGTTGAGCCTCAAGACAC
1 TTTTCAATTTCTGTTT-TCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACAC
*
26959116 GTTGAGGTA
65 GCTGAGGTA
* *
26959125 TTTTCAATTTCTGTCTTTCAAAAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAACCTCAAG--
1 TTTTCAATTTCTGT-TTTC--AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGAC
*
26959188 ACGCTGAGGTG
63 ACGCTGAGGTA
*
26959199 TTTTCCATTTCTGTTCTTCAA
1 TTTTCAATTTCTGTT-TTCAA
26959220 TTTTTATGTT
Statistics
Matches: 657, Mismatches: 68, Indels: 52
0.85 0.09 0.07
Matches are distributed among these distances:
69 54 0.08
70 3 0.00
71 78 0.12
72 23 0.04
73 213 0.32
74 153 0.23
75 95 0.14
76 38 0.06
ACGTcount: A:0.30, C:0.16, G:0.20, T:0.34
Consensus pattern (73 bp):
TTTTCAATTTCTGTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACG
CTGAGGTA
Found at i:26958875 original size:220 final size:220
Alignment explanation
Indices: 26958416--26959219 Score: 1286
Period size: 220 Copynumber: 3.7 Consensus size: 220
26958406 ATGTTTCTAA
* * * * *
26958416 AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGACATGCTGAGGTAATTTCAATTTT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTTC
* * *
26958481 TGTC-----AAAACTCAACTCATATTGCAAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATT
66 TGTCTTTAAAAAAATCAGCTCATATTGCAAGAGGTGAGTTGAACCTCAAGACACGTTGAGGTATT
* * *
26958541 TTCAATTTCAG-TTTTC-AAAAAATCAACTCATATTGCGATAGGTGAGTTGAGCCTCAGGACACG
131 TTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGATAGGTGAGTTGAACCTCA--AGACG
*
26958604 CTGTGGTAATTTCAATTTTTGTTTGTC
194 CTGAGGTAATTTCAATTTTTGTTTGTC
*
26958631 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTTC
*
26958696 TGTCTTTTAAAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAACCTCAAGACACGTTGAGGTA-
66 TGTC-TTTAAAAAAATCAGCTCATATTGCAAGAGGTGAGTTGAACCTCAAGACACGTTGAGGTAT
26958760 TTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGATAGGTGAGTTGAACCTCAAGACGC
130 TTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGATAGGTGAGTTGAACCTCAAGACGC
26958825 TGAGGTAATTTCAATTTTTGTTTGTC
195 TGAGGTAATTTCAATTTTTGTTTGTC
* *
26958851 AAAAATCAACTTATATTGCGAGAGGTGAGTTGAGCCTCAAGATACGCTGAGGTATTTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTTC
26958916 TGTCTTTAAAAAAATCAGCTCATATTGCAAGAGGTGAGTTGAACCTCAAGACACGTTGAGGTATT
66 TGTCTTTAAAAAAATCAGCTCATATTGCAAGAGGTGAGTTGAACCTCAAGACACGTTGAGGTATT
26958981 TTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGATAGGTGAGTTGAACCTCAAGACGCT
131 TTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGATAGGTGAGTTGAACCTCAAGACGCT
26959046 GAGGTAATTTCAATTTTTGTTTGTC
196 GAGGTAATTTCAATTTTTGTTTGTC
* *
26959071 AAAAATCAACTCATATTGTGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTTC
* * *
26959136 TGTCTTTCAAAAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAACCTCAAG--ACGCTGAGGTG
66 TGTCTTT--AAAAAAATCAGCTCATATTGCAAGAGGTGAGTTGAACCTCAAGACACGTTGAGGTA
* *
26959199 TTTTCCATTTCTGTTCTTCAA
129 TTTTCAATTTCTGTTTTTCAA
26959220 TTTTTATGTT
Statistics
Matches: 551, Mismatches: 27, Indels: 17
0.93 0.05 0.03
Matches are distributed among these distances:
215 63 0.11
219 58 0.11
220 294 0.53
221 55 0.10
222 81 0.15
ACGTcount: A:0.31, C:0.16, G:0.20, T:0.33
Consensus pattern (220 bp):
AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTTC
TGTCTTTAAAAAAATCAGCTCATATTGCAAGAGGTGAGTTGAACCTCAAGACACGTTGAGGTATT
TTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGATAGGTGAGTTGAACCTCAAGACGCT
GAGGTAATTTCAATTTTTGTTTGTC
Found at i:26959395 original size:89 final size:85
Alignment explanation
Indices: 26959146--26959477 Score: 333
Period size: 91 Copynumber: 3.7 Consensus size: 85
26959136 TGTCTTTCAA
* * * * * *
26959146 AAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAACCTCA-AGACGCTGAGGTGTTTTCCATTTC
1 AAAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCAGACACGCTGAGGTATTTTCAATTTC
* *
26959210 TGTTCTTCAATTTTTATGTTTC
66 TGTTTTTCAATTTTT-T-TTCC
** * * ** *
26959232 AAAAAATCAGGTCATATTGCGAGTGGTGAGTTGAGCCTTGACTCACACGCTGAGGTATTTTCAAA
1 AAAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCC-T--CAGACACGCTGAGGTATTTTCAAT
26959297 TTCTGTTTTTCAAATTTTTTTTCC
63 TTCTGTTTTTC-AATTTTTTTTCC
* * *
26959321 AAAAAATCAACTCATATTACAAGAGGTGAGTTCAGCCTCAGGACACGCTGAGATATTTTCAATTT
1 AAAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCA-GACACGCTGAGGTATTTTCAATTT
* *
26959386 CATTTTTTTTCAATTTATGTTTGTCA
65 C--TGTTTTTCAATTT-T-TTT-TCC
*
26959412 AAAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCAGATCATACGCCGAGGTATTTTCAAT
1 AAAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCAGA-C--ACGCTGAGGTATTTTCAAT
26959477 T
63 T
26959478 GATTTTTATT
Statistics
Matches: 206, Mismatches: 26, Indels: 21
0.81 0.10 0.08
Matches are distributed among these distances:
86 35 0.17
87 23 0.11
88 6 0.03
89 43 0.21
90 33 0.16
91 48 0.23
93 18 0.09
ACGTcount: A:0.29, C:0.17, G:0.18, T:0.36
Consensus pattern (85 bp):
AAAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCAGACACGCTGAGGTATTTTCAATTTC
TGTTTTTCAATTTTTTTTCC
Found at i:26959438 original size:91 final size:87
Alignment explanation
Indices: 26959125--26959477 Score: 347
Period size: 89 Copynumber: 3.9 Consensus size: 87
26959115 CGTTGAGGTA
* * * * *
26959125 TTTTCAATTTCTGTCTTTCAAAAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAACCTCA-AGA
1 TTTTCAATTTATGT-TTTC-AAAAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCAGACA
* *
26959189 CGCTGAGGTGTTTTCCATTTCTGT
64 CGCTGAGGTATTTTCAATTTCTGT
* ** * * **
26959213 TCTTCAATTTTTATG-TTTC-AAAAAATCAGGTCATATTGCGAGTGGTGAGTTGAGCCTTGACTC
1 TTTTCAA--TTTATGTTTTCAAAAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCC-T--CAG
*
26959276 ACACGCTGAGGTATTTTCAAATTCTGT
61 ACACGCTGAGGTATTTTCAATTTCTGT
* * *
26959303 TTTTCAAATTT-T-TTTTCCAAAAAATCAACTCATATTACAAGAGGTGAGTTCAGCCTCAGGACA
1 TTTTC-AATTTATGTTTTCAAAAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCA-GACA
* *
26959366 CGCTGAGATATTTTCAATTTCATTTT
64 CGCTGAGGTATTTTCAATTTC--TGT
26959392 TTTTCAATTTATGTTTGTCAAAAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCAGATCA
1 TTTTCAATTTATGTTT-TCAAAAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCAGA-C-
*
26959457 TACGCCGAGGTATTTTCAATT
63 -ACGCTGAGGTATTTTCAATT
26959478 GATTTTTATT
Statistics
Matches: 220, Mismatches: 27, Indels: 31
0.79 0.10 0.11
Matches are distributed among these distances:
86 35 0.16
87 23 0.10
88 21 0.10
89 43 0.20
90 37 0.17
91 43 0.20
93 18 0.08
ACGTcount: A:0.29, C:0.17, G:0.17, T:0.37
Consensus pattern (87 bp):
TTTTCAATTTATGTTTTCAAAAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCAGACACG
CTGAGGTATTTTCAATTTCTGT
Found at i:26959445 original size:180 final size:174
Alignment explanation
Indices: 26959146--26959475 Score: 403
Period size: 180 Copynumber: 1.9 Consensus size: 174
26959136 TGTCTTTCAA
* * * * * * * *
26959146 AAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAACCTCAAGACGCTGAGGTGTTTTCCATTTCT
1 AAAAAATCAACTCATATTACAAGAGGTGAGTTCAACCTCAACACGCTGAGATATTTTCAATTTCT
** * * *
26959211 GTTCTTCAATTTTTATGTTTCAAAAAATCAGGTCATATTGCGAGTGGTGAGTTGAGCCT-TGACT
66 GTTCTTCAA-TTTTATGTTTCAAAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCAGA-T
*
26959275 CACACGCTGAGGTATTTTCAAATTCTGTTTTTCAAATTTTTTTTCC
129 CACACGCCGAGGTATTTTCAAATTCTGTTTTTCAAATTTTTTTTCC
*
26959321 AAAAAATCAACTCATATTACAAGAGGTGAGTTCAGCCTCAGGACACGCTGAGATATTTTCAATTT
1 AAAAAATCAACTCATATTACAAGAGGTGAGTTCAACCTCA--ACACGCTGAGATATTTTCAATTT
* *
26959386 CATTTTTTTTCAA-TTTATGTTTGTCAAAAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCT
64 C--TGTTCTTCAATTTTATG-TT-TC-AAAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCT
*
26959450 CAGATCATACGCCGAGGTATTTTCAA
124 CAGATCACACGCCGAGGTATTTTCAA
26959476 TTGATTTTTA
Statistics
Matches: 129, Mismatches: 18, Indels: 11
0.82 0.11 0.07
Matches are distributed among these distances:
175 35 0.27
177 26 0.20
178 2 0.02
179 10 0.08
180 54 0.42
181 2 0.02
ACGTcount: A:0.29, C:0.17, G:0.18, T:0.35
Consensus pattern (174 bp):
AAAAAATCAACTCATATTACAAGAGGTGAGTTCAACCTCAACACGCTGAGATATTTTCAATTTCT
GTTCTTCAATTTTATGTTTCAAAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCAGATCA
CACGCCGAGGTATTTTCAAATTCTGTTTTTCAAATTTTTTTTCC
Found at i:26959567 original size:102 final size:103
Alignment explanation
Indices: 26959387--26959577 Score: 278
Period size: 102 Copynumber: 1.9 Consensus size: 103
26959377 TTTCAATTTC
*
26959387 ATTTTTTTTCAATTTATGTTTGTCAAAAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCA
1 ATTTTTTTTCAATTTATGTTTGTC-AAAAAATCAACTCATATTACAAGAGGTGAGTTGAGCCTCA
* *
26959452 GATCATACGCCGAGGTATTTTCAATTGATTTTTATTTTT
65 GATCACACACCGAGGTATTTTCAATTGATTTTTATTTTT
* * *
26959491 ATTTTTTTTCAATTTATGCTTTG-C-AAAAATCAGCTCATATTACGAGAGGTGAGTTGAGCCTCG
1 ATTTTTTTTCAATTTATG-TTTGTCAAAAAATCAACTCATATTACAAGAGGTGAGTTGAGCCTCA
* *
26959554 GGTCACATACCGAGGTATTTTCAA
65 GATCACACACCGAGGTATTTTCAA
26959578 AATCTGTTTT
Statistics
Matches: 78, Mismatches: 8, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
102 55 0.71
104 19 0.24
105 4 0.05
ACGTcount: A:0.28, C:0.15, G:0.17, T:0.39
Consensus pattern (103 bp):
ATTTTTTTTCAATTTATGTTTGTCAAAAAATCAACTCATATTACAAGAGGTGAGTTGAGCCTCAG
ATCACACACCGAGGTATTTTCAATTGATTTTTATTTTT
Found at i:26959661 original size:87 final size:87
Alignment explanation
Indices: 26959515--26959713 Score: 222
Period size: 87 Copynumber: 2.3 Consensus size: 87
26959505 TATGCTTTGC
** * * * * *
26959515 AAAAATCAGCTCATATTACGAGAGGTGAGTTGAGCCTCGGGTCACATACCGAGGTATTTTCAAAA
1 AAAAATCAATTCATATTGCGAGAAGTGAGTTGAGCATCGGCTCACATACCGAGCTATTTTCAAAA
26959580 TCTGTTTTACAAAT-TTT-GTTTT
66 TCTGTTTT--AAATGTTTAGTTTT
* * * * **
26959602 AAAAATCAATTCATATTGCGAGAAGTGAGTTGAGCATTGGCTCACGTGCTGAGCTATTTTCAATT
1 AAAAATCAATTCATATTGCGAGAAGTGAGTTGAGCATCGGCTCACATACCGAGCTATTTTCAAAA
*
26959667 TCTGTTTTTAATGTTTAGTTTT
66 TCTGTTTTAAATGTTTAGTTTT
*
26959689 AAAGAGTCAATTCATATTGCGAGAA
1 AAA-AATCAATTCATATTGCGAGAA
26959714 ATAAGTTAAG
Statistics
Matches: 94, Mismatches: 15, Indels: 5
0.82 0.13 0.04
Matches are distributed among these distances:
85 3 0.03
86 3 0.03
87 68 0.72
88 20 0.21
ACGTcount: A:0.30, C:0.14, G:0.20, T:0.36
Consensus pattern (87 bp):
AAAAATCAATTCATATTGCGAGAAGTGAGTTGAGCATCGGCTCACATACCGAGCTATTTTCAAAA
TCTGTTTTAAATGTTTAGTTTT
Found at i:26960377 original size:30 final size:30
Alignment explanation
Indices: 26960338--26960436 Score: 153
Period size: 30 Copynumber: 3.3 Consensus size: 30
26960328 CTAGCCTTTA
*
26960338 CCACTACCAACTCCACTAGCCACACTTGCT
1 CCACCACCAACTCCACTAGCCACACTTGCT
*
26960368 CCACCACCAACTCCACTAGCCACACTAGCT
1 CCACCACCAACTCCACTAGCCACACTTGCT
* **
26960398 CCACCACCTACTCCACTAGCCACACTTATT
1 CCACCACCAACTCCACTAGCCACACTTGCT
26960428 CCACCACCA
1 CCACCACCA
26960437 CTTGTACCTA
Statistics
Matches: 62, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 62 1.00
ACGTcount: A:0.28, C:0.49, G:0.05, T:0.17
Consensus pattern (30 bp):
CCACCACCAACTCCACTAGCCACACTTGCT
Found at i:26961095 original size:22 final size:22
Alignment explanation
Indices: 26961065--26961106 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
26961055 TTTCTACATG
*
26961065 TTATCTTATGTATATATTTTAA
1 TTATATTATGTATATATTTTAA
*
26961087 TTATATTATGTATGTATTTT
1 TTATATTATGTATATATTTT
26961107 TTACACTATA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.29, C:0.02, G:0.07, T:0.62
Consensus pattern (22 bp):
TTATATTATGTATATATTTTAA
Found at i:26961121 original size:25 final size:26
Alignment explanation
Indices: 26961071--26961123 Score: 74
Period size: 25 Copynumber: 2.1 Consensus size: 26
26961061 CATGTTATCT
*
26961071 TATGTATATATTTTAATTATATTATG
1 TATGTATATATTTTAACTATATTATG
26961097 TATGTAT-T-TTTTACACTATATTATG
1 TATGTATATATTTTA-ACTATATTATG
26961122 TA
1 TA
26961124 CATAATTTTT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
24 5 0.20
25 13 0.52
26 7 0.28
ACGTcount: A:0.32, C:0.04, G:0.08, T:0.57
Consensus pattern (26 bp):
TATGTATATATTTTAACTATATTATG
Found at i:26961133 original size:78 final size:82
Alignment explanation
Indices: 26960991--26961168 Score: 184
Period size: 78 Copynumber: 2.2 Consensus size: 82
26960981 TATTACGTAT
* * * * * * **
26960991 ATATATATATATATTATACTATTTTATGTATATATCTTTAAGACTATATTATTTATATTTTTTTT
1 ATATGTATATATTTTATACTATATTATGTATATATCTTTAACACTATATTATGTACATAATTTTT
*
26961056 TTCTA-C-ATGTTAT-C
66 TTATATCTATGTTATAC
* * * * *
26961070 TTATGTATATATTTTA-ATTATATTATGTATGTATTTTTTACACTATATTATGTACATAATTTTT
1 ATATGTATATATTTTATACTATATTATGTATATATCTTTAACACTATATTATGTACATAATTTTT
*
26961134 TTATATCTATTTTATAC
66 TTATATCTATGTTATAC
*
26961151 ATATGTATATATTATATA
1 ATATGTATATATTTTATA
26961169 TATCTTAACA
Statistics
Matches: 78, Mismatches: 17, Indels: 5
0.78 0.17 0.05
Matches are distributed among these distances:
78 42 0.54
79 14 0.18
80 6 0.08
81 15 0.19
82 1 0.01
ACGTcount: A:0.33, C:0.06, G:0.04, T:0.57
Consensus pattern (82 bp):
ATATGTATATATTTTATACTATATTATGTATATATCTTTAACACTATATTATGTACATAATTTTT
TTATATCTATGTTATAC
Found at i:26961223 original size:25 final size:24
Alignment explanation
Indices: 26961195--26961250 Score: 62
Period size: 25 Copynumber: 2.3 Consensus size: 24
26961185 GTTATATTTT
*
26961195 CACTATTTTAT-GTATATACTTCAAA
1 CACTATTATATAGTATAT--TTCAAA
*
26961220 CACTA-TATATAGTATATTTCTAA
1 CACTATTATATAGTATATTTCAAA
26961243 CACTATTA
1 CACTATTA
26961251 CTATTTAAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
23 10 0.37
24 6 0.22
25 11 0.41
ACGTcount: A:0.38, C:0.16, G:0.04, T:0.43
Consensus pattern (24 bp):
CACTATTATATAGTATATTTCAAA
Found at i:26962568 original size:17 final size:18
Alignment explanation
Indices: 26962536--26962569 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
26962526 TATTCTTCAT
*
26962536 TTTAATTTTCGTAATTTA
1 TTTAATTTTCGAAATTTA
26962554 TTTAA-TTTCGAAATTT
1 TTTAATTTTCGAAATTT
26962570 CAATTCAACT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 10 0.67
18 5 0.33
ACGTcount: A:0.29, C:0.06, G:0.06, T:0.59
Consensus pattern (18 bp):
TTTAATTTTCGAAATTTA
Found at i:26966889 original size:23 final size:23
Alignment explanation
Indices: 26966863--26966951 Score: 94
Period size: 28 Copynumber: 3.8 Consensus size: 23
26966853 TAATTTTTAT
26966863 TATTTATTATTTTATTTTATTAG
1 TATTTATTATTTTATTTTATTAG
26966886 TATTTATTATTTTATTTCATTTTATTAG
1 TATTTATTA---T-TTT-ATTTTATTAG
*
26966914 TATTTATTATTTTATTTT-GT--
1 TATTTATTATTTTATTTTATTAG
*
26966934 TATTTATTACTTTATTTT
1 TATTTATTATTTTATTTT
26966952 TGGATATTGA
Statistics
Matches: 59, Mismatches: 2, Indels: 13
0.80 0.03 0.18
Matches are distributed among these distances:
20 17 0.29
22 1 0.02
23 14 0.24
24 3 0.05
25 1 0.02
26 1 0.02
27 3 0.05
28 19 0.32
ACGTcount: A:0.24, C:0.02, G:0.03, T:0.71
Consensus pattern (23 bp):
TATTTATTATTTTATTTTATTAG
Found at i:26966907 original size:28 final size:28
Alignment explanation
Indices: 26966858--26966930 Score: 119
Period size: 28 Copynumber: 2.5 Consensus size: 28
26966848 TTTCTTAATT
*
26966858 TTTATTATTTATTATTTTATTTTATTAGTA
1 TTTATTA-TT-TTATTTCATTTTATTAGTA
26966888 TTTATTATTTTATTTCATTTTATTAGTA
1 TTTATTATTTTATTTCATTTTATTAGTA
26966916 TTTATTATTTTATTT
1 TTTATTATTTTATTT
26966931 TGTTATTTAT
Statistics
Matches: 42, Mismatches: 1, Indels: 2
0.93 0.02 0.04
Matches are distributed among these distances:
28 33 0.79
29 2 0.05
30 7 0.17
ACGTcount: A:0.25, C:0.01, G:0.03, T:0.71
Consensus pattern (28 bp):
TTTATTATTTTATTTCATTTTATTAGTA
Found at i:26971360 original size:22 final size:21
Alignment explanation
Indices: 26971318--26971384 Score: 80
Period size: 22 Copynumber: 3.0 Consensus size: 21
26971308 ATATATTTTT
26971318 AAGTAAAAATAAATAAAAGAAAAA
1 AAGT-AAAAT-AA-AAAAGAAAAA
26971342 AAGTAAAAGTAAAAAAGAAAAA
1 AAGTAAAA-TAAAAAAGAAAAA
* *
26971364 AATTAAAAAAAAAAAGAAAAA
1 AAGTAAAATAAAAAAGAAAAA
26971385 GAAGAATGAG
Statistics
Matches: 40, Mismatches: 2, Indels: 5
0.85 0.04 0.11
Matches are distributed among these distances:
21 12 0.30
22 17 0.43
23 6 0.15
24 5 0.12
ACGTcount: A:0.81, C:0.00, G:0.09, T:0.10
Consensus pattern (21 bp):
AAGTAAAATAAAAAAGAAAAA
Found at i:26972025 original size:10 final size:10
Alignment explanation
Indices: 26972010--26972059 Score: 59
Period size: 10 Copynumber: 5.0 Consensus size: 10
26972000 TTAATTTAGG
26972010 ATTTAT-TTT
1 ATTTATCTTT
26972019 CATTTATCTTT
1 -ATTTATCTTT
*
26972030 AATTATCTTT
1 ATTTATCTTT
26972040 ATTTAT-TTGT
1 ATTTATCTT-T
26972050 ATTTATCTTT
1 ATTTATCTTT
26972060 TAGAATTTAA
Statistics
Matches: 35, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
9 2 0.06
10 28 0.80
11 5 0.14
ACGTcount: A:0.22, C:0.08, G:0.02, T:0.68
Consensus pattern (10 bp):
ATTTATCTTT
Found at i:26976235 original size:21 final size:22
Alignment explanation
Indices: 26976209--26976255 Score: 62
Period size: 21 Copynumber: 2.2 Consensus size: 22
26976199 AATTTTTAGA
*
26976209 TTAAATTAAATATAAATT-T-TT
1 TTAAATAAAATA-AAATTATATT
26976230 TTAAATAAAATAAAATTATATT
1 TTAAATAAAATAAAATTATATT
26976252 TTAA
1 TTAA
26976256 TCTTTAAATT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
20 5 0.22
21 12 0.52
22 6 0.26
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (22 bp):
TTAAATAAAATAAAATTATATT
Found at i:26976252 original size:25 final size:26
Alignment explanation
Indices: 26976201--26976253 Score: 63
Period size: 26 Copynumber: 2.1 Consensus size: 26
26976191 ATATAATTAA
* * *
26976201 TTTTTAGATTAAATTAAATATAAATT
1 TTTTTAAATAAAATAAAATATAAATT
*
26976227 TTTTTAAATAAAATAAAAT-TATATT
1 TTTTTAAATAAAATAAAATATAAATT
26976252 TT
1 TT
26976254 AATCTTTAAA
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
25 7 0.30
26 16 0.70
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.51
Consensus pattern (26 bp):
TTTTTAAATAAAATAAAATATAAATT
Found at i:26977416 original size:9 final size:9
Alignment explanation
Indices: 26977402--26977426 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
26977392 AGTTCTTTTT
26977402 TTTTTTTAC
1 TTTTTTTAC
26977411 TTTTTTTAC
1 TTTTTTTAC
26977420 TTTTTTT
1 TTTTTTT
26977427 CTTATATTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.08, C:0.08, G:0.00, T:0.84
Consensus pattern (9 bp):
TTTTTTTAC
Found at i:26977511 original size:36 final size:36
Alignment explanation
Indices: 26977442--26977515 Score: 98
Period size: 36 Copynumber: 2.0 Consensus size: 36
26977432 ATTTTGTCTC
*
26977442 TTTCTTAGATTTTTTTCTTTTTTAAGTTTTATATTAT
1 TTTCTTAGATTTTTTTCTTATTTAAG-TTTATATTAT
26977479 TTTCTTA-ATTTATTTTGCTTATTTAA-TTTATATTAT
1 TTTCTTAGATTT-TTTT-CTTATTTAAGTTTATATTAT
26977515 T
1 T
26977516 AATTTTAAAA
Statistics
Matches: 34, Mismatches: 1, Indels: 5
0.85 0.03 0.12
Matches are distributed among these distances:
36 15 0.44
37 11 0.32
38 8 0.24
ACGTcount: A:0.22, C:0.05, G:0.04, T:0.69
Consensus pattern (36 bp):
TTTCTTAGATTTTTTTCTTATTTAAGTTTATATTAT
Found at i:26977520 original size:18 final size:17
Alignment explanation
Indices: 26977469--26977516 Score: 51
Period size: 18 Copynumber: 2.7 Consensus size: 17
26977459 TTTTTTAAGT
*
26977469 TTTATATTATTTTCTTAA
1 TTTATATTATTAT-TTAA
* *
26977487 TTTATTTTGCTTATTTAA
1 TTTATATT-ATTATTTAA
26977505 TTTATATTATTA
1 TTTATATTATTA
26977517 ATTTTAAAAA
Statistics
Matches: 24, Mismatches: 5, Indels: 3
0.75 0.16 0.09
Matches are distributed among these distances:
17 3 0.12
18 18 0.75
19 3 0.12
ACGTcount: A:0.27, C:0.04, G:0.02, T:0.67
Consensus pattern (17 bp):
TTTATATTATTATTTAA
Found at i:26977901 original size:11 final size:11
Alignment explanation
Indices: 26977885--26977927 Score: 52
Period size: 11 Copynumber: 4.0 Consensus size: 11
26977875 AAATTTTAAA
26977885 AAATATATATT
1 AAATATATATT
26977896 AAATAT-TATT
1 AAATATATATT
** *
26977906 TTATAAATATT
1 AAATATATATT
26977917 AAATATATATT
1 AAATATATATT
26977928 TTCTTTTTTT
Statistics
Matches: 25, Mismatches: 6, Indels: 2
0.76 0.18 0.06
Matches are distributed among these distances:
10 7 0.28
11 18 0.72
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (11 bp):
AAATATATATT
Found at i:26978100 original size:28 final size:26
Alignment explanation
Indices: 26978066--26978135 Score: 77
Period size: 28 Copynumber: 2.6 Consensus size: 26
26978056 AAATTTTATA
*
26978066 TATAATTTTTAAATACATTTAAAAAAAT
1 TATAATTTTTAAATA-ATAT-AAAAAAT
* *
26978094 TATAATTTTTTAATAATATAAGAAAT
1 TATAATTTTTAAATAATATAAAAAAT
*
26978120 CATAATCTTTTAAATA
1 TATAAT-TTTTAAATA
26978136 TTTTTTAAAA
Statistics
Matches: 36, Mismatches: 5, Indels: 3
0.82 0.11 0.07
Matches are distributed among these distances:
26 11 0.31
27 11 0.31
28 14 0.39
ACGTcount: A:0.50, C:0.04, G:0.01, T:0.44
Consensus pattern (26 bp):
TATAATTTTTAAATAATATAAAAAAT
Found at i:26978200 original size:33 final size:32
Alignment explanation
Indices: 26978134--26978204 Score: 81
Period size: 33 Copynumber: 2.2 Consensus size: 32
26978124 ATCTTTTAAA
*
26978134 TATTTTTTAAAATTTTTTCTTTTTCCTTTTTT
1 TATTTTTTAAAATTTTATCTTTTTCCTTTTTT
* * *
26978166 TACTTTTTTGAAATTTTATGTTTTT-TTTTCTTT
1 TA-TTTTTTAAAATTTTATCTTTTTCCTTT-TTT
26978199 TATTTT
1 TATTTT
26978205 GTTTATTTAT
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
32 9 0.27
33 24 0.73
ACGTcount: A:0.15, C:0.07, G:0.03, T:0.75
Consensus pattern (32 bp):
TATTTTTTAAAATTTTATCTTTTTCCTTTTTT
Found at i:26978411 original size:17 final size:19
Alignment explanation
Indices: 26978389--26978429 Score: 68
Period size: 17 Copynumber: 2.3 Consensus size: 19
26978379 TGACTATTAA
26978389 TAAATTTAAATATA-A-AT
1 TAAATTTAAATATATATAT
26978406 TAAATTTAAATATATATAT
1 TAAATTTAAATATATATAT
26978425 TAAAT
1 TAAAT
26978430 ATATATTTTT
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
17 14 0.64
18 1 0.05
19 7 0.32
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (19 bp):
TAAATTTAAATATATATAT
Found at i:26978429 original size:13 final size:13
Alignment explanation
Indices: 26978411--26978435 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
26978401 TAAATTAAAT
26978411 TTAAATATATATA
1 TTAAATATATATA
26978424 TTAAATATATAT
1 TTAAATATATAT
26978436 TTTTTATTAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (13 bp):
TTAAATATATATA
Found at i:26981453 original size:30 final size:30
Alignment explanation
Indices: 26981417--26981489 Score: 92
Period size: 30 Copynumber: 2.4 Consensus size: 30
26981407 GTCCCAGAAT
*
26981417 AGTTCATATAACCCGGACATAGGTGGTTCG
1 AGTTCATATAACCCGGACATAGGCGGTTCG
* * *
26981447 AGTTCATATCACCCGGATATATGCGGTTCG
1 AGTTCATATAACCCGGACATAGGCGGTTCG
* *
26981477 AGTCCATTTAACC
1 AGTTCATATAACC
26981490 TAGAGCAACC
Statistics
Matches: 36, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 36 1.00
ACGTcount: A:0.26, C:0.23, G:0.22, T:0.29
Consensus pattern (30 bp):
AGTTCATATAACCCGGACATAGGCGGTTCG
Found at i:26983000 original size:20 final size:20
Alignment explanation
Indices: 26982975--26983016 Score: 84
Period size: 20 Copynumber: 2.1 Consensus size: 20
26982965 AGACCCTTTG
26982975 ATTTGTCAGATATAATGCAA
1 ATTTGTCAGATATAATGCAA
26982995 ATTTGTCAGATATAATGCAA
1 ATTTGTCAGATATAATGCAA
26983015 AT
1 AT
26983017 GTTATCTTGC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.40, C:0.10, G:0.14, T:0.36
Consensus pattern (20 bp):
ATTTGTCAGATATAATGCAA
Found at i:26984986 original size:14 final size:13
Alignment explanation
Indices: 26984952--26984993 Score: 52
Period size: 14 Copynumber: 3.3 Consensus size: 13
26984942 ACTTGAAATT
26984952 TATTTTTTA-AAA
1 TATTTTTTATAAA
*
26984964 -ATGTTTTATAATA
1 TATTTTTTATAA-A
26984977 TATTTTTTATAAA
1 TATTTTTTATAAA
26984990 TATT
1 TATT
26984994 AAAAATATAT
Statistics
Matches: 25, Mismatches: 2, Indels: 5
0.78 0.06 0.16
Matches are distributed among these distances:
11 7 0.28
12 2 0.08
13 6 0.24
14 10 0.40
ACGTcount: A:0.38, C:0.00, G:0.02, T:0.60
Consensus pattern (13 bp):
TATTTTTTATAAA
Found at i:26985038 original size:29 final size:29
Alignment explanation
Indices: 26985006--26985069 Score: 74
Period size: 29 Copynumber: 2.2 Consensus size: 29
26984996 AAATATATTT
26985006 AATATTATAAAACATTTAAAATGATTTAA
1 AATATTATAAAACATTTAAAATGATTTAA
* ** * * *
26985035 AATATTTTTTAATATTTTAAATGATTTTA
1 AATATTATAAAACATTTAAAATGATTTAA
26985064 AATATT
1 AATATT
26985070 TTTAAAATTT
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.47, C:0.02, G:0.03, T:0.48
Consensus pattern (29 bp):
AATATTATAAAACATTTAAAATGATTTAA
Found at i:26985055 original size:20 final size:21
Alignment explanation
Indices: 26985030--26985077 Score: 57
Period size: 19 Copynumber: 2.4 Consensus size: 21
26985020 TTTAAAATGA
*
26985030 TTTAAAAT-ATTTTTTAATA-T
1 TTTAAAATGA-TTTTAAATATT
26985050 TTT-AAATGATTTTAAATATT
1 TTTAAAATGATTTTAAATATT
26985070 TTTAAAAT
1 TTTAAAAT
26985078 TTTACATAGA
Statistics
Matches: 24, Mismatches: 1, Indels: 5
0.80 0.03 0.17
Matches are distributed among these distances:
19 12 0.50
20 8 0.33
21 4 0.17
ACGTcount: A:0.42, C:0.00, G:0.02, T:0.56
Consensus pattern (21 bp):
TTTAAAATGATTTTAAATATT
Found at i:26985070 original size:29 final size:28
Alignment explanation
Indices: 26985019--26985081 Score: 90
Period size: 29 Copynumber: 2.2 Consensus size: 28
26985009 ATTATAAAAC
* *
26985019 ATTTAAAATGATTTAAAATATTTTTTAAT
1 ATTTTAAATGATTTAAAATA-TTTTTAAA
*
26985048 ATTTTAAATGATTTTAAATATTTTTAAA
1 ATTTTAAATGATTTAAAATATTTTTAAA
26985076 ATTTTA
1 ATTTTA
26985082 CATAGAATTT
Statistics
Matches: 31, Mismatches: 3, Indels: 1
0.89 0.09 0.03
Matches are distributed among these distances:
28 13 0.42
29 18 0.58
ACGTcount: A:0.43, C:0.00, G:0.03, T:0.54
Consensus pattern (28 bp):
ATTTTAAATGATTTAAAATATTTTTAAA
Found at i:26985071 original size:9 final size:9
Alignment explanation
Indices: 26984986--26985081 Score: 61
Period size: 10 Copynumber: 10.2 Consensus size: 9
26984976 ATATTTTTTA
*
26984986 TAAATATTA
1 TAAATATTT
*
26984995 AAAATATATT
1 TAAATAT-TT
26985005 T-AATATTAT
1 TAAATATT-T
* *
26985014 AAAACATTT
1 TAAATATTT
*
26985023 AAAATGATTT
1 TAAAT-ATTT
*
26985033 AAAATATTTT
1 TAAATA-TTT
*
26985043 TTAATATTT
1 TAAATATTT
26985052 TAAATGATTT
1 TAAAT-ATTT
26985062 TAAATATTTT
1 TAAATA-TTT
26985072 TAAA-ATTT
1 TAAATATTT
26985080 TA
1 TA
26985082 CATAGAATTT
Statistics
Matches: 71, Mismatches: 9, Indels: 15
0.75 0.09 0.16
Matches are distributed among these distances:
8 6 0.08
9 27 0.38
10 38 0.54
ACGTcount: A:0.48, C:0.01, G:0.02, T:0.49
Consensus pattern (9 bp):
TAAATATTT
Found at i:26985784 original size:37 final size:38
Alignment explanation
Indices: 26985733--26985817 Score: 111
Period size: 37 Copynumber: 2.3 Consensus size: 38
26985723 AAAAAAAAGA
* *
26985733 AAAAATTTATTTTTTTAAAATTT-TAAAAAATTAATTTG
1 AAAAATATA-TTTTTTAAAATTTATAAAAAATTAATTTC
*
26985771 AAAAATATA-TTTTTAAAATTTATAAATAATTAATTTC
1 AAAAATATATTTTTTAAAATTTATAAAAAATTAATTTC
*
26985808 ACAAATATAT
1 AAAAATATAT
26985818 ATATAAAGTT
Statistics
Matches: 41, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
36 12 0.29
37 21 0.51
38 8 0.20
ACGTcount: A:0.51, C:0.02, G:0.01, T:0.46
Consensus pattern (38 bp):
AAAAATATATTTTTTAAAATTTATAAAAAATTAATTTC
Found at i:26985835 original size:37 final size:37
Alignment explanation
Indices: 26985748--26985866 Score: 90
Period size: 37 Copynumber: 3.4 Consensus size: 37
26985738 TTTATTTTTT
** * * *
26985748 TAAAATTTTAAAA-AATTAATTTGAAAAATATATTTT
1 TAAAATTAAAAAATAATTAATTTCAAAAATATATATA
* * *
26985784 TAAAATTTATAAATAATTAATTTCACAAATATATATA
1 TAAAATTAAAAAATAATTAATTTCAAAAATATATATA
*
26985821 TAAAGTTAAAAAAT-ATT--TTT-AAAAATA-ATA-A
1 TAAAATTAAAAAATAATTAATTTCAAAAATATATATA
26985852 TTAAAATTTAAAAAA
1 -TAAAA-TTAAAAAA
26985867 AATATTATAA
Statistics
Matches: 69, Mismatches: 11, Indels: 9
0.78 0.12 0.10
Matches are distributed among these distances:
31 1 0.01
32 7 0.10
33 14 0.20
34 3 0.04
36 14 0.20
37 30 0.43
ACGTcount: A:0.57, C:0.02, G:0.02, T:0.39
Consensus pattern (37 bp):
TAAAATTAAAAAATAATTAATTTCAAAAATATATATA
Found at i:26985958 original size:18 final size:18
Alignment explanation
Indices: 26985908--26985959 Score: 61
Period size: 18 Copynumber: 2.9 Consensus size: 18
26985898 AAATTTTTTA
*
26985908 AAATTAATAATATAAATT
1 AAATAAATAATATAAATT
* *
26985926 AAATAAGTAAAATAAATT
1 AAATAAATAATATAAATT
26985944 AAGA-AAATAATATAAA
1 AA-ATAAATAATATAAA
26985960 ACTTAAAAAA
Statistics
Matches: 28, Mismatches: 5, Indels: 2
0.80 0.14 0.06
Matches are distributed among these distances:
18 27 0.96
19 1 0.04
ACGTcount: A:0.67, C:0.00, G:0.04, T:0.29
Consensus pattern (18 bp):
AAATAAATAATATAAATT
Found at i:26986012 original size:8 final size:8
Alignment explanation
Indices: 26985999--26986046 Score: 69
Period size: 8 Copynumber: 5.8 Consensus size: 8
26985989 AATATAAGAA
26985999 AAAAAAGT
1 AAAAAAGT
26986007 AAAAAAGT
1 AAAAAAGT
*
26986015 TAAAAAGTT
1 AAAAAAG-T
26986024 AAAAAAGT
1 AAAAAAGT
26986032 AAAAAAAGT
1 -AAAAAAGT
26986041 AAAAAA
1 AAAAAA
26986047 AAAATATAAG
Statistics
Matches: 36, Mismatches: 2, Indels: 4
0.86 0.05 0.10
Matches are distributed among these distances:
8 21 0.58
9 15 0.42
ACGTcount: A:0.75, C:0.00, G:0.10, T:0.15
Consensus pattern (8 bp):
AAAAAAGT
Found at i:26986012 original size:9 final size:9
Alignment explanation
Indices: 26985998--26986047 Score: 68
Period size: 9 Copynumber: 5.8 Consensus size: 9
26985988 AAATATAAGA
26985998 AAAAAAAGT
1 AAAAAAAGT
26986007 -AAAAAAGT
1 AAAAAAAGT
*
26986015 -TAAAAAGT
1 AAAAAAAGT
*
26986023 TAAAAAAGT
1 AAAAAAAGT
26986032 AAAAAAAGT
1 AAAAAAAGT
26986041 AAAAAAA
1 AAAAAAA
26986048 AAATATAAGA
Statistics
Matches: 37, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
8 15 0.41
9 22 0.59
ACGTcount: A:0.76, C:0.00, G:0.10, T:0.14
Consensus pattern (9 bp):
AAAAAAAGT
Found at i:26986026 original size:17 final size:17
Alignment explanation
Indices: 26985998--26986046 Score: 73
Period size: 17 Copynumber: 2.9 Consensus size: 17
26985988 AAATATAAGA
26985998 AAAAAAAGTAAAAAAGT
1 AAAAAAAGTAAAAAAGT
*
26986015 -TAAAAAGTTAAAAAAGT
1 AAAAAAAG-TAAAAAAGT
26986032 AAAAAAAGTAAAAAA
1 AAAAAAAGTAAAAAA
26986047 AAAATATAAG
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
16 6 0.21
17 16 0.57
18 6 0.21
ACGTcount: A:0.76, C:0.00, G:0.10, T:0.14
Consensus pattern (17 bp):
AAAAAAAGTAAAAAAGT
Found at i:26995601 original size:19 final size:18
Alignment explanation
Indices: 26995579--26995654 Score: 52
Period size: 19 Copynumber: 4.2 Consensus size: 18
26995569 ATATTTTTTC
26995579 ATTTATGTAATTTTAATTA
1 ATTTATGTAATTTT-ATTA
*
26995598 A-TT-T-TAATTTT-TGA
1 ATTTATGTAATTTTATTA
* * *
26995612 ATATTATTTAATATTTTTTC
1 AT-TTATGTAAT-TTTATTA
26995632 ATTTATGTAATTTTAATTA
1 ATTTATGTAATTTT-ATTA
26995651 ATTT
1 ATTT
26995655 GTATTTTATA
Statistics
Matches: 44, Mismatches: 6, Indels: 14
0.69 0.09 0.22
Matches are distributed among these distances:
14 3 0.07
16 9 0.20
17 2 0.05
18 9 0.20
19 18 0.41
20 3 0.07
ACGTcount: A:0.33, C:0.01, G:0.04, T:0.62
Consensus pattern (18 bp):
ATTTATGTAATTTTATTA
Found at i:26995661 original size:53 final size:53
Alignment explanation
Indices: 26995545--26995654 Score: 193
Period size: 53 Copynumber: 2.1 Consensus size: 53
26995535 GTAACGGTTT
** *
26995545 ATTTTAAACTTTGAATATTTTTTAATATTTTTTCATTTATGTAATTTTAATTA
1 ATTTTAATTTTTGAATATTATTTAATATTTTTTCATTTATGTAATTTTAATTA
26995598 ATTTTAATTTTTGAATATTATTTAATATTTTTTCATTTATGTAATTTTAATTA
1 ATTTTAATTTTTGAATATTATTTAATATTTTTTCATTTATGTAATTTTAATTA
26995651 ATTT
1 ATTT
26995655 GTATTTTATA
Statistics
Matches: 54, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
53 54 1.00
ACGTcount: A:0.32, C:0.03, G:0.04, T:0.62
Consensus pattern (53 bp):
ATTTTAATTTTTGAATATTATTTAATATTTTTTCATTTATGTAATTTTAATTA
Found at i:27002534 original size:39 final size:37
Alignment explanation
Indices: 27002491--27002683 Score: 172
Period size: 39 Copynumber: 4.9 Consensus size: 37
27002481 GAATATAGTG
*
27002491 CCAGCATAAAGCCTGTGGGACTTTAGCCCGGATATAACA
1 CCAGCAGAAAGCCT-TGGGAC-TTAGCCCGGATATAACA
** * *
27002530 CCAGCACGATTGCCTTCGGGGCTTAACCCGGATATAACA
1 CCAGCA-GAAAGCCTT-GGGACTTAGCCCGGATATAACA
* *
27002569 CCAACATAAATGCCTTCGGGACTTAGCCCGGATATAACA
1 CCAGCAGAAA-GCCTT-GGGACTTAGCCCGGATATAACA
* *
27002608 CCAGTACGAATA-CCTTTAGGACTTAGCCCGGATATAACA
1 CCAGCA-GAA-AGCC-TTGGGACTTAGCCCGGATATAACA
* * *
27002647 CCAGCACGAATGCCTTCAGGACTTAGCCCGAATATAA
1 CCAGCA-GAAAGCCTT-GGGACTTAGCCCGGATATAA
27002684 TTCTCCATTA
Statistics
Matches: 128, Mismatches: 18, Indels: 16
0.79 0.11 0.10
Matches are distributed among these distances:
38 3 0.02
39 111 0.87
40 13 0.10
41 1 0.01
ACGTcount: A:0.31, C:0.28, G:0.20, T:0.21
Consensus pattern (37 bp):
CCAGCAGAAAGCCTTGGGACTTAGCCCGGATATAACA
Found at i:27002595 original size:78 final size:78
Alignment explanation
Indices: 27002495--27002683 Score: 238
Period size: 78 Copynumber: 2.4 Consensus size: 78
27002485 ATAGTGCCAG
* * * *
27002495 CATAAA-GCCTGT-GGGACTTTAGCCCGGATATAACACCAGCACGATTGCCTTCGGGGCTTAACC
1 CATAAATGCCT-TCGGGAC-TTAGCCCGGATATAACACCAGCACGAATACCTTCAGGACTTAACC
27002558 CGGATATAACACCAA
64 CGGATATAACACCAA
* * *
27002573 CATAAATGCCTTCGGGACTTAGCCCGGATATAACACCAGTACGAATACCTTTAGGACTTAGCCCG
1 CATAAATGCCTTCGGGACTTAGCCCGGATATAACACCAGCACGAATACCTTCAGGACTTAACCCG
*
27002638 GATATAACACCAG
66 GATATAACACCAA
** * *
27002651 CACGAATGCCTTCAGGACTTAGCCCGAATATAA
1 CATAAATGCCTTCGGGACTTAGCCCGGATATAA
27002684 TTCTCCATTA
Statistics
Matches: 97, Mismatches: 12, Indels: 4
0.86 0.11 0.04
Matches are distributed among these distances:
78 88 0.91
79 9 0.09
ACGTcount: A:0.31, C:0.28, G:0.20, T:0.21
Consensus pattern (78 bp):
CATAAATGCCTTCGGGACTTAGCCCGGATATAACACCAGCACGAATACCTTCAGGACTTAACCCG
GATATAACACCAA
Found at i:27009146 original size:39 final size:39
Alignment explanation
Indices: 27009103--27009295 Score: 289
Period size: 39 Copynumber: 4.9 Consensus size: 39
27009093 ATATATAATG
* *
27009103 CCAGCAC-AAAGCCTGCGGGACTTTAGCCCGGATATAACA
1 CCAGCACGAATGCCTTCGGGAC-TTAGCCCGGATATAACA
* *
27009142 CCAGCACGAATGCCTTCGGGGCTTAACCCGGATATAACA
1 CCAGCACGAATGCCTTCGGGACTTAGCCCGGATATAACA
*
27009181 CCAGCACGAATGCCTTTGGGACTTAGCCCGGATATAACA
1 CCAGCACGAATGCCTTCGGGACTTAGCCCGGATATAACA
*
27009220 CCAGCACGAATGCCTTCAGGACTTAGCCCGGATATAACA
1 CCAGCACGAATGCCTTCGGGACTTAGCCCGGATATAACA
* * *
27009259 CCAGCATGAATGCCTTCAGGACTTAGCCCGAATATAA
1 CCAGCACGAATGCCTTCGGGACTTAGCCCGGATATAA
27009296 TTCTCCATTA
Statistics
Matches: 142, Mismatches: 11, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
39 131 0.92
40 11 0.08
ACGTcount: A:0.30, C:0.30, G:0.22, T:0.19
Consensus pattern (39 bp):
CCAGCACGAATGCCTTCGGGACTTAGCCCGGATATAACA
Found at i:27011382 original size:28 final size:29
Alignment explanation
Indices: 27011349--27011568 Score: 118
Period size: 28 Copynumber: 8.1 Consensus size: 29
27011339 TTATTTTAAA
27011349 AAACCCTAAACCATAATTTAATTTATTTT
1 AAACCCTAAACCATAATTTAATTTATTTT
*
27011378 -AACCCTAAACCCTAATTTAATTTATTTT
1 AAACCCTAAACCATAATTTAATTTATTTT
*
27011406 AAACCCT-AA-C-----TTAATTTATTTA
1 AAACCCTAAACCATAATTTAATTTATTTT
* *
27011428 AAACCCTAGAACCTTAATTTAA-TTAATTT
1 AAACCCTA-AACCATAATTTAATTTATTTT
* ** ** *
27011457 CAA-CCTATAAATATAAACCCTAATTTA--AT
1 AAACCCTA-AACCAT-AA-TTTAATTTATTTT
* *
27011486 AAACCCAAAACCCTAATTTAATTTATTTT
1 AAACCCTAAACCATAATTTAATTTATTTT
* *
27011515 AAAACCT-AA-CTTAA-TTAATTTA----
1 AAACCCTAAACCATAATTTAATTTATTTT
* *
27011537 AAACCCTAAAACCCTAATTTAATTAATTTT
1 AAACCCT-AAACCATAATTTAATTTATTTT
27011567 AA
1 AA
27011569 CCAAAAAATA
Statistics
Matches: 142, Mismatches: 26, Indels: 45
0.67 0.12 0.21
Matches are distributed among these distances:
22 24 0.17
24 4 0.03
25 5 0.04
26 15 0.11
27 12 0.08
28 40 0.28
29 27 0.19
30 12 0.08
31 3 0.02
ACGTcount: A:0.43, C:0.19, G:0.00, T:0.38
Consensus pattern (29 bp):
AAACCCTAAACCATAATTTAATTTATTTT
Found at i:27011411 original size:22 final size:22
Alignment explanation
Indices: 27011383--27011435 Score: 88
Period size: 22 Copynumber: 2.4 Consensus size: 22
27011373 ATTTTAACCC
*
27011383 TAAACCCTAATTTAATTTATTT
1 TAAACCCTAACTTAATTTATTT
27011405 TAAACCCTAACTTAATTTATTT
1 TAAACCCTAACTTAATTTATTT
*
27011427 AAAACCCTA
1 TAAACCCTA
27011436 GAACCTTAAT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
22 29 1.00
ACGTcount: A:0.40, C:0.19, G:0.00, T:0.42
Consensus pattern (22 bp):
TAAACCCTAACTTAATTTATTT
Found at i:27011502 original size:109 final size:109
Alignment explanation
Indices: 27011378--27011628 Score: 351
Period size: 109 Copynumber: 2.3 Consensus size: 109
27011368 AATTTATTTT
* * * *
27011378 AACCCTAAACCCTAATTTAATTTATTTTAAACCCTAACTTAATTTATTTAAAACCCTAGAACCTT
1 AACCCAAAACCCTAATTTAATTTATTTTAAACCCTAACTTAATTAATTTAAAACCCTAAAACCCT
* *
27011443 AATTTAATTAATTTCAACCTATAAATATAAAC-CCTAATTTAATA
66 AATTTAATTAATTTCAACCAAAAAATAT-AACTCCTAATTTAATA
*
27011487 AACCCAAAACCCTAATTTAATTTATTTTAAAACCTAACTTAATTAATTTAAAACCCTAAAACCCT
1 AACCCAAAACCCTAATTTAATTTATTTTAAACCCTAACTTAATTAATTTAAAACCCTAAAACCCT
* * *
27011552 AATTTAATTAATTTTAACCAAAAAATATAACTGCTAATTTAATT
66 AATTTAATTAATTTCAACCAAAAAATATAACTCCTAATTTAATA
* *** *
27011596 TATTTAAAACCCTAACTTAATTTATTTTAAACC
1 AACCCAAAACCCTAATTTAATTTATTTTAAACC
27011629 TTAAAACCCT
Statistics
Matches: 125, Mismatches: 16, Indels: 2
0.87 0.11 0.01
Matches are distributed among these distances:
108 3 0.02
109 122 0.98
ACGTcount: A:0.43, C:0.18, G:0.01, T:0.37
Consensus pattern (109 bp):
AACCCAAAACCCTAATTTAATTTATTTTAAACCCTAACTTAATTAATTTAAAACCCTAAAACCCT
AATTTAATTAATTTCAACCAAAAAATATAACTCCTAATTTAATA
Found at i:27011538 original size:21 final size:22
Alignment explanation
Indices: 27011492--27011541 Score: 66
Period size: 21 Copynumber: 2.3 Consensus size: 22
27011482 TAATAAACCC
* *
27011492 AAAACCCTAATTTAATTTATTTT
1 AAAA-CCTAACTTAATTTAATTT
27011515 AAAACCTAACTTAA-TTAATTT
1 AAAACCTAACTTAATTTAATTT
27011536 AAAACC
1 AAAACC
27011542 CTAAAACCCT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
21 12 0.48
22 9 0.36
23 4 0.16
ACGTcount: A:0.46, C:0.16, G:0.00, T:0.38
Consensus pattern (22 bp):
AAAACCTAACTTAATTTAATTT
Found at i:27011545 original size:22 final size:22
Alignment explanation
Indices: 27011384--27011453 Score: 86
Period size: 22 Copynumber: 3.0 Consensus size: 22
27011374 TTTTAACCCT
* *
27011384 AAACCCTAATTTAATTTATTTT
1 AAACCCTAACTTAATTTATTTA
27011406 AAACCCTAACTTAATTTATTTA
1 AAACCCTAACTTAATTTATTTA
*
27011428 AAACCCTAGAACCTTAATTTAATTA
1 AAACCCT--AA-CTTAATTTATTTA
27011453 A
1 A
27011454 TTTCAACCTA
Statistics
Matches: 42, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
22 27 0.64
24 2 0.05
25 13 0.31
ACGTcount: A:0.41, C:0.17, G:0.01, T:0.40
Consensus pattern (22 bp):
AAACCCTAACTTAATTTATTTA
Found at i:27011615 original size:22 final size:22
Alignment explanation
Indices: 27011585--27011628 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
27011575 AATATAACTG
*
27011585 CTAATTTAATTTATTTAAAACC
1 CTAACTTAATTTATTTAAAACC
*
27011607 CTAACTTAATTTATTTTAAACC
1 CTAACTTAATTTATTTAAAACC
27011629 TTAAAACCCT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.39, C:0.16, G:0.00, T:0.45
Consensus pattern (22 bp):
CTAACTTAATTTATTTAAAACC
Found at i:27011635 original size:30 final size:29
Alignment explanation
Indices: 27011513--27011650 Score: 97
Period size: 30 Copynumber: 4.8 Consensus size: 29
27011503 TTAATTTATT
*
27011513 TTAAAA-CCTAACTTAATTAATTTAAAACC
1 TTAAAACCCTAACTTAATTAATTT-TAACC
* *
27011542 CTAAAACCCTAATTTAATTAATTTTAACC
1 TTAAAACCCTAACTTAATTAATTTTAACC
* *** *
27011571 -AAAAAATATAACTGCTAATTTAA-TTT-A-T
1 TTAAAACCCTAACT--TAA-TTAATTTTAACC
*
27011599 TTAAAACCCTAACTTAATTTATTTTAAACC
1 TTAAAACCCTAACTTAATTAATTTT-AACC
* *
27011629 TTAAAACCCTAATTTACTTAAT
1 TTAAAACCCTAACTTAATTAAT
27011651 CTATTTAAAA
Statistics
Matches: 82, Mismatches: 18, Indels: 17
0.70 0.15 0.15
Matches are distributed among these distances:
26 3 0.04
27 6 0.07
28 8 0.10
29 20 0.24
30 41 0.50
31 4 0.05
ACGTcount: A:0.44, C:0.17, G:0.01, T:0.38
Consensus pattern (29 bp):
TTAAAACCCTAACTTAATTAATTTTAACC
Found at i:27011694 original size:22 final size:21
Alignment explanation
Indices: 27011653--27011701 Score: 73
Period size: 22 Copynumber: 2.3 Consensus size: 21
27011643 TACTTAATCT
*
27011653 ATTTAA-AAACATAAATCCTA
1 ATTTAATAAACATAAACCCTA
27011673 ATTTAATAAACACTAAACCCTA
1 ATTTAATAAACA-TAAACCCTA
27011695 ATTTAAT
1 ATTTAAT
27011702 TTATTTTAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
20 6 0.23
21 5 0.19
22 15 0.58
ACGTcount: A:0.51, C:0.16, G:0.00, T:0.33
Consensus pattern (21 bp):
ATTTAATAAACATAAACCCTA
Found at i:27011711 original size:22 final size:22
Alignment explanation
Indices: 27011686--27011738 Score: 70
Period size: 22 Copynumber: 2.4 Consensus size: 22
27011676 TAATAAACAC
*
27011686 TAAACCCTAATTTAATTTATTT
1 TAAACCCTAACTTAATTTATTT
*
27011708 TAAACACTAACTTAATTTATTT
1 TAAACCCTAACTTAATTTATTT
* *
27011730 AAAATCCTA
1 TAAACCCTA
27011739 GAACCCTAAT
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
22 26 1.00
ACGTcount: A:0.42, C:0.15, G:0.00, T:0.43
Consensus pattern (22 bp):
TAAACCCTAACTTAATTTATTT
Found at i:27011798 original size:24 final size:24
Alignment explanation
Indices: 27011771--27011837 Score: 75
Period size: 24 Copynumber: 2.8 Consensus size: 24
27011761 TTAAAACCAC
*
27011771 AAACCCTAAGCCCTAATTTGTTT-A
1 AAACCCTAA-CCCTAATTTATTTAA
*
27011795 AAACCCTAA-CTTAATTTATTTAA
1 AAACCCTAACCCTAATTTATTTAA
*
27011818 AAACCATTAACCCTAATTTA
1 AAACC-CTAACCCTAATTTA
27011838 AATAATTTTT
Statistics
Matches: 36, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
22 10 0.28
23 6 0.17
24 12 0.33
25 8 0.22
ACGTcount: A:0.40, C:0.22, G:0.03, T:0.34
Consensus pattern (24 bp):
AAACCCTAACCCTAATTTATTTAA
Found at i:27011818 original size:107 final size:106
Alignment explanation
Indices: 27011585--27011779 Score: 277
Period size: 107 Copynumber: 1.8 Consensus size: 106
27011575 AATATAACTG
* *
27011585 CTAATTTAATTTATTTAAAACCCTAACTTAATTTATTTTAAACCTTAAAACCCTAATTTACTTAA
1 CTAATTTAATTTATTT-AAACACTAACTTAATTTATTTAAAACCTTAAAACCCTAATTTACTTAA
* * **
27011650 TCTATTTAAAAACATAAATCCTAATTTAATAAACACTAAACC
65 TCTATTTAAAAACACAAACCCTAACCTAATAAACACTAAACC
*
27011692 CTAATTTAATTTATTTTAAACACTAACTTAATTTATTTAAAATCC-TAGAACCCTAATTTACTTA
1 CTAATTTAATTTA-TTTAAACACTAACTTAATTTATTTAAAA-CCTTAAAACCCTAATTTACTTA
*
27011756 A-CTATTTAAAACCACAAACCCTAA
64 ATCTATTTAAAAACACAAACCCTAA
27011780 GCCCTAATTT
Statistics
Matches: 80, Mismatches: 6, Indels: 5
0.88 0.07 0.05
Matches are distributed among these distances:
106 20 0.25
107 55 0.69
108 5 0.06
ACGTcount: A:0.43, C:0.18, G:0.01, T:0.38
Consensus pattern (106 bp):
CTAATTTAATTTATTTAAACACTAACTTAATTTATTTAAAACCTTAAAACCCTAATTTACTTAAT
CTATTTAAAAACACAAACCCTAACCTAATAAACACTAAACC
Found at i:27020325 original size:172 final size:172
Alignment explanation
Indices: 27020039--27020380 Score: 666
Period size: 172 Copynumber: 2.0 Consensus size: 172
27020029 GGAGAGTAAA
27020039 AAAAAAATTCCAGAACAAAGAAAAACCTCTTCTTCTTCAAGGAGCTTCACTATGGAAGGGTCCAT
1 AAAAAAATTCCAGAACAAAGAAAAACCTCTTCTTCTTCAAGGAGCTTCACTATGGAAGGGTCCAT
*
27020104 CACAAGTTATACCTGCAACCGGCTGCCGTTCTACCTCGCCGGCTGCTCAGCGGGAATCGTTCAGC
66 CACAAGTTATACCTGCAACCGGCTGCCGTTCTACCTCGCAGGCTGCTCAGCGGGAATCGTTCAGC
27020169 TTACAGGATTATAATTAAGTACAGTATTTCAAAAAAAAAAGG
131 TTACAGGATTATAATTAAGTACAGTATTTCAAAAAAAAAAGG
27020211 AAAAAAATTCCAGAACAAAGAAAAACCTCTTCTTCTTCAAGGAGCTTCACTATGGAAGGGTCCAT
1 AAAAAAATTCCAGAACAAAGAAAAACCTCTTCTTCTTCAAGGAGCTTCACTATGGAAGGGTCCAT
*
27020276 CACAAGTTATACCTGCAACCGGCTGCCGTTCTGCCTCGCAGGCTGCTCAGCGGGAATCGTTCAGC
66 CACAAGTTATACCTGCAACCGGCTGCCGTTCTACCTCGCAGGCTGCTCAGCGGGAATCGTTCAGC
27020341 TTACAGGATTATAATTAAGTACAGTATTTCAAAAAAAAAA
131 TTACAGGATTATAATTAAGTACAGTATTTCAAAAAAAAAA
27020381 AAGGATACTG
Statistics
Matches: 168, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
172 168 1.00
ACGTcount: A:0.35, C:0.23, G:0.18, T:0.24
Consensus pattern (172 bp):
AAAAAAATTCCAGAACAAAGAAAAACCTCTTCTTCTTCAAGGAGCTTCACTATGGAAGGGTCCAT
CACAAGTTATACCTGCAACCGGCTGCCGTTCTACCTCGCAGGCTGCTCAGCGGGAATCGTTCAGC
TTACAGGATTATAATTAAGTACAGTATTTCAAAAAAAAAAGG
Found at i:27020900 original size:21 final size:22
Alignment explanation
Indices: 27020866--27020917 Score: 54
Period size: 22 Copynumber: 2.4 Consensus size: 22
27020856 CAATAACAAC
* *
27020866 AAAATAGTAAC-AAATA-ATAG
1 AAAATAATAACAAAATAGAGAG
*
27020886 TAAAATAATAGCAAAATAGAGAG
1 -AAAATAATAACAAAATAGAGAG
27020909 AAAATAATA
1 AAAATAATA
27020918 TTTAAAAAAT
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
21 9 0.35
22 14 0.54
23 3 0.12
ACGTcount: A:0.65, C:0.04, G:0.12, T:0.19
Consensus pattern (22 bp):
AAAATAATAACAAAATAGAGAG
Found at i:27025739 original size:17 final size:16
Alignment explanation
Indices: 27025704--27025753 Score: 55
Period size: 17 Copynumber: 2.9 Consensus size: 16
27025694 GAACTAAAAA
*
27025704 AAAAATTTAAAAGTAGC
1 AAAAA-TTAAAAGTTGC
27025721 AAAAATTAAATAGTTGC
1 AAAAATTAAA-AGTTGC
*
27025738 AAGAAATCAAAAGTTG
1 AA-AAATTAAAAGTTG
27025754 TCATTATTTA
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
16 5 0.17
17 17 0.59
18 7 0.24
ACGTcount: A:0.56, C:0.06, G:0.14, T:0.24
Consensus pattern (16 bp):
AAAAATTAAAAGTTGC
Found at i:27031983 original size:2 final size:2
Alignment explanation
Indices: 27031976--27032012 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
27031966 TGTAAATTAG
27031976 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT C
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT C
27032013 GGAAACAAAA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.00, C:0.51, G:0.00, T:0.49
Consensus pattern (2 bp):
CT
Found at i:27040631 original size:32 final size:31
Alignment explanation
Indices: 27040570--27040633 Score: 76
Period size: 32 Copynumber: 2.0 Consensus size: 31
27040560 AAAACGAAAT
*
27040570 TTTAAATTTGTTTATTTTCAACTAATTTAAA
1 TTTAAATTTGTTTATTTTCAAATAATTTAAA
* *
27040601 TTTAAAGTTT-TTTATTTTTTAAATATTTTAAA
1 TTTAAA-TTTGTTTA-TTTTCAAATAATTTAAA
27040633 T
1 T
27040634 GAATTTATTT
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
31 10 0.36
32 18 0.64
ACGTcount: A:0.34, C:0.03, G:0.03, T:0.59
Consensus pattern (31 bp):
TTTAAATTTGTTTATTTTCAAATAATTTAAA
Found at i:27048595 original size:19 final size:20
Alignment explanation
Indices: 27048542--27048595 Score: 58
Period size: 19 Copynumber: 2.7 Consensus size: 20
27048532 TCTTTATTAA
*
27048542 CTAATTATTATTTTATTTTTT
1 CTAATTATTA-TTAATTTTTT
*
27048563 CTAATGAGTT-TTAATTTTTT
1 CTAATTA-TTATTAATTTTTT
27048583 -TAATTATTATTAA
1 CTAATTATTATTAA
27048596 ATTAAATTAT
Statistics
Matches: 28, Mismatches: 3, Indels: 6
0.76 0.08 0.16
Matches are distributed among these distances:
18 2 0.07
19 9 0.32
20 9 0.32
21 6 0.21
22 2 0.07
ACGTcount: A:0.30, C:0.04, G:0.04, T:0.63
Consensus pattern (20 bp):
CTAATTATTATTAATTTTTT
Found at i:27052529 original size:34 final size:34
Alignment explanation
Indices: 27052491--27052559 Score: 104
Period size: 34 Copynumber: 2.0 Consensus size: 34
27052481 AAAAAATAAA
27052491 AAAATAAAATATTTGAAATATT-TTAATATAATTT
1 AAAATAAAATATTTGAAATATTATTAA-ATAATTT
* *
27052525 AAAATAAAATATTTTAAATATTATTAAATTATTT
1 AAAATAAAATATTTGAAATATTATTAAATAATTT
27052559 A
1 A
27052560 TTTTTATTAA
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
34 28 0.88
35 4 0.12
ACGTcount: A:0.54, C:0.00, G:0.01, T:0.45
Consensus pattern (34 bp):
AAAATAAAATATTTGAAATATTATTAAATAATTT
Found at i:27054341 original size:22 final size:24
Alignment explanation
Indices: 27054302--27054356 Score: 69
Period size: 22 Copynumber: 2.4 Consensus size: 24
27054292 TCAATTTGAC
*
27054302 CAATTTTAATAAAAAAAAT-T-TA
1 CAATTTTAATAAAAAAAATCTAAA
**
27054324 CAATTTTAATAATTAAAATCTAAA
1 CAATTTTAATAAAAAAAATCTAAA
27054348 CAATTTTAA
1 CAATTTTAA
27054357 GATTTAATTT
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
22 17 0.61
23 1 0.04
24 10 0.36
ACGTcount: A:0.55, C:0.07, G:0.00, T:0.38
Consensus pattern (24 bp):
CAATTTTAATAAAAAAAATCTAAA
Found at i:27060770 original size:20 final size:20
Alignment explanation
Indices: 27060725--27060761 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
27060715 ATAGTAAATG
27060725 TTAATTCTATTCTAAATTTT
1 TTAATTCTATTCTAAATTTT
27060745 TTAATTCT-TT-TAAATTT
1 TTAATTCTATTCTAAATTT
27060762 ATTTTAATTA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 7 0.41
19 2 0.12
20 8 0.47
ACGTcount: A:0.30, C:0.08, G:0.00, T:0.62
Consensus pattern (20 bp):
TTAATTCTATTCTAAATTTT
Found at i:27067825 original size:68 final size:71
Alignment explanation
Indices: 27067642--27067837 Score: 299
Period size: 68 Copynumber: 2.7 Consensus size: 71
27067632 TGTGATTGAA
27067642 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAACAGAAATTGAAAATACTCAGCAC
1 GCTCAACTCA-CTCTCGCAATATGAGTTGA-TTTTTTGAAAACAGAAATTGAAAATACT-A-CAC
27067707 GTGAACCAAG
62 GTGAACCAAG
27067717 GCTCAACTCACTCTCGCAATATGAGTTGATTTTTTGAAAACAGAAATTGAAAATACT-CACGTG-
1 GCTCAACTCACTCTCGCAATATGAGTTGATTTTTTGAAAACAGAAATTGAAAATACTACACGTGA
* **
27067780 TCTGAG
66 ACCAAG
27067786 GCTCAACTCA-TCTCGCAATATGAGTTGATTTTTTGAAAACAGAAAATTGAAA
1 GCTCAACTCACTCTCGCAATATGAGTTGATTTTTTGAAAACAG-AAATTGAAA
27067838 TTCAACTCAT
Statistics
Matches: 117, Mismatches: 3, Indels: 8
0.91 0.02 0.06
Matches are distributed among these distances:
68 32 0.27
69 22 0.19
70 6 0.05
73 28 0.24
74 19 0.16
75 10 0.09
ACGTcount: A:0.36, C:0.19, G:0.16, T:0.29
Consensus pattern (71 bp):
GCTCAACTCACTCTCGCAATATGAGTTGATTTTTTGAAAACAGAAATTGAAAATACTACACGTGA
ACCAAG
Found at i:27067846 original size:51 final size:50
Alignment explanation
Indices: 27067788--27067890 Score: 163
Period size: 51 Copynumber: 2.0 Consensus size: 50
27067778 TGTCTGAGGC
*
27067788 TCAACTCA-TCTCGCAATATGAGTTGATTTTTTGAAAACAGAAAATTGAAAT
1 TCAACTCATTCTCGCAATATGAGTTGA-ATTTTGAAAACAG-AAATTGAAAT
27067839 TCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAAT
1 TCAACTCA-TTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAAT
27067890 T
1 T
27067891 ACCTCAGCTG
Statistics
Matches: 49, Mismatches: 1, Indels: 4
0.91 0.02 0.07
Matches are distributed among these distances:
51 19 0.39
52 12 0.24
53 18 0.37
ACGTcount: A:0.39, C:0.14, G:0.14, T:0.34
Consensus pattern (50 bp):
TCAACTCATTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAAT
Found at i:27067877 original size:120 final size:119
Alignment explanation
Indices: 27067719--27067959 Score: 373
Period size: 121 Copynumber: 2.0 Consensus size: 119
27067709 GAACCAAGGC
*
27067719 TCAACTCACTCTCGCAATATGAGTTGATTTTTTGAAAACAGAAATTGAAAATA-CTCA-CGTGTC
1 TCAACTCACTCTCGCAATATGAGTTGATATTTTGAAAACAGAAATTGAAAATACCTCAGC-TGTC
27067782 TGAGGCTCAACTCA-TCTCGCAATATGAGTTGATTTTTTGAAAACAGAAAATTGAAAT
65 TGAGGCTCAACTCATTCTCGCAATATGAGTTGA--TTTTGAAAACAG-AAATTGAAAT
* *
27067839 TCAACTCATTTCTCGCAATATGAGTTGA-ATTTTGAAAACAGAAATTGAAATTACCTCAGCTGTC
1 TCAACTCA-CTCTCGCAATATGAGTTGATATTTTGAAAACAGAAATTGAAAATACCTCAGCTGTC
27067903 TGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTGAAAACAGAAATTGAAAT
65 TGAGGCTCAACTCA-TTCTCGCAATATGAGTTGATTTTGAAAACAGAAATTGAAAT
27067959 T
1 T
27067960 ACCTCAGCGT
Statistics
Matches: 113, Mismatches: 3, Indels: 10
0.90 0.02 0.08
Matches are distributed among these distances:
120 42 0.37
121 52 0.46
122 1 0.01
123 18 0.16
ACGTcount: A:0.35, C:0.17, G:0.16, T:0.32
Consensus pattern (119 bp):
TCAACTCACTCTCGCAATATGAGTTGATATTTTGAAAACAGAAATTGAAAATACCTCAGCTGTCT
GAGGCTCAACTCATTCTCGCAATATGAGTTGATTTTGAAAACAGAAATTGAAAT
Found at i:27067926 original size:70 final size:71
Alignment explanation
Indices: 27067839--27068287 Score: 709
Period size: 70 Copynumber: 6.4 Consensus size: 71
27067829 AAATTGAAAT
27067839 TCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAGC-TGTC
1 TCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAGCGTGTC
27067903 TGAGGC
66 TGAGGC
27067909 TCAACTCATTTCTCGCAATATGAGTTG-ATTTTGAAAACAGAAATTGAAATTACCTCAGCGTGTC
1 TCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAGCGTGTC
27067973 TGAGGC
66 TGAGGC
* * * *
27067979 TCAACTCA-CTCTCGC-ATATGAGTTGATTTTTTGAAAACA-AAATTGAAAATACCTCAACGTGT
1 TCAACTCATTTCTCGCAATATGAGTTGA-ATTTTGAAAACAGAAATTGAAATTACCTCAGCGTGT
27068041 CTTGAGGC
65 C-TGAGGC
27068049 TCAACTCATTTCT-GCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAGCGTGTC
1 TCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAGCGTGTC
27068113 TGAGGC
66 TGAGGC
27068119 TCAACTCA-TTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAGCGTGTC
1 TCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAGCGTGTC
*
27068183 CGA-GC
66 TGAGGC
* * *
27068188 TCAACTCATCTCTCGCAATATGAGTTGATTTTTTGACAACAGAAATT-AAATTACCTCAGCGTGT
1 TCAACTCATTTCTCGCAATATGAGTTGA-ATTTTGAAAACAGAAATTGAAATTACCTCAGCGTGT
27068252 CCTGAGGC
65 -CTGAGGC
**
27068260 TCAACTCACCTCTCGCAATATGAGTTGA
1 TCAACTCATTTCTCGCAATATGAGTTGA
27068288 TTTCTAAAAA
Statistics
Matches: 353, Mismatches: 14, Indels: 22
0.91 0.04 0.06
Matches are distributed among these distances:
68 10 0.03
69 74 0.21
70 185 0.52
71 55 0.16
72 29 0.08
ACGTcount: A:0.32, C:0.20, G:0.17, T:0.31
Consensus pattern (71 bp):
TCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAGCGTGTC
TGAGGC
Found at i:27068091 original size:140 final size:142
Alignment explanation
Indices: 27067839--27068417 Score: 720
Period size: 140 Copynumber: 4.3 Consensus size: 142
27067829 AAATTGAAAT
**
27067839 TCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAGC-TGTC
1 TCAACTCACCTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAGCGTGTC
27067903 TGAGGCTCAACTCATTTCTCGCAATATGAGTTG-ATTTTGAAAACAGAAATTGAAATTACCTCAG
66 TGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAG
27067967 CGTGTCTGAGGC
131 CGTGTCTGAGGC
* * *
27067979 TCAACTCA-CTCTCGC-ATATGAGTTGATTTTTTGAAAACA-AAATTGAAAATACCTCAACGTGT
1 TCAACTCACCTCTCGCAATATGAGTTGA-ATTTTGAAAACAGAAATTGAAATTACCTCAGCGTGT
27068041 CTTGAGGCTCAACTCATTTCT-GCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTC
65 C-TGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTC
27068105 AGCGTGTCTGAGGC
129 AGCGTGTCTGAGGC
*
27068119 TCAACTCA-TTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAGCGTGTC
1 TCAACTCACCTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAGCGTGTC
* * * *
27068183 CGA-GCTCAACTCATCTCTCGCAATATGAGTTGATTTTTTGACAACAGAAATT-AAATTACCTCA
66 TGAGGCTCAACTCATTTCTCGCAATATGAGTTGA-ATTTTGAAAACAGAAATTGAAATTACCTCA
27068246 GCGTGTCCTGAGGC
130 GCGTGT-CTGAGGC
* *
27068260 TCAACTCACCTCTCGCAATATGAGTTG-A-TTT-----C--TAA---AAA-TACCTCAGCGCGTC
1 TCAACTCACCTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAGCGTGT-
* * * *
27068312 CTGAGGCTCAGCTCA--CCTCGCAATATGA---G----TTGAACACAGAAATTGACA-TACCTCA
65 CTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCA
27068367 GCGTGTCCTGAGGC
130 GCGTGT-CTGAGGC
*
27068381 TCAACTCACCTCTCGCAATATGAGCTG-ATTTTGAAAA
1 TCAACTCACCTCTCGCAATATGAGTTGAATTTTGAAAA
27068418 AGTAGAAATT
Statistics
Matches: 398, Mismatches: 22, Indels: 51
0.85 0.05 0.11
Matches are distributed among these distances:
121 61 0.15
122 5 0.01
126 1 0.00
129 24 0.06
130 6 0.02
131 9 0.02
133 2 0.01
135 1 0.00
138 28 0.07
139 48 0.12
140 131 0.33
141 65 0.16
142 17 0.04
ACGTcount: A:0.31, C:0.22, G:0.17, T:0.30
Consensus pattern (142 bp):
TCAACTCACCTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAGCGTGTC
TGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAG
CGTGTCTGAGGC
Found at i:27068380 original size:62 final size:62
Alignment explanation
Indices: 27068226--27068404 Score: 233
Period size: 62 Copynumber: 2.9 Consensus size: 62
27068216 TTTTTTGACA
**
27068226 ACAGAAATTAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATT
1 ACAGAAATT-AA-TACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAAC
* * * *
27068290 TC-TAAA--AATACCTCAGCGCGTCCTGAGGCTCAGCTCA-C-CTCGCAATATGAGTTGAAC
1 ACAGAAATTAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAAC
27068347 ACAGAAATTGACATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAG
1 ACAGAAATT-A-ATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAG
27068405 CTGATTTTGA
Statistics
Matches: 98, Mismatches: 10, Indels: 14
0.80 0.08 0.11
Matches are distributed among these distances:
57 18 0.18
58 4 0.04
59 27 0.28
60 2 0.02
61 1 0.01
62 28 0.29
63 4 0.04
64 14 0.14
ACGTcount: A:0.29, C:0.28, G:0.18, T:0.25
Consensus pattern (62 bp):
ACAGAAATTAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAAC
Found at i:27068480 original size:53 final size:54
Alignment explanation
Indices: 27068381--27068485 Score: 135
Period size: 53 Copynumber: 1.9 Consensus size: 54
27068371 GTCCTGAGGC
*
27068381 TCAACTCACCTCTCGCAATATGAGCTGATTTTGAAAAAGTAGAAATT-AAAAGGT
1 TCAACCCACCTCTCGCAATATGAGCTGATTTTGAAAAAGTA-AAATTGAAAAGGT
* *
27068435 TCAACCCA-CTCTCGCAATATGAGTTGATTCTTGAACAACGT-AAATTGAAAA
1 TCAACCCACCTCTCGCAATATGAGCTGATT-TTGAA-AAAGTAAAATTGAAAA
27068486 CAGAAATTGA
Statistics
Matches: 45, Mismatches: 3, Indels: 6
0.83 0.06 0.11
Matches are distributed among these distances:
53 25 0.56
54 16 0.36
55 4 0.09
ACGTcount: A:0.38, C:0.19, G:0.15, T:0.28
Consensus pattern (54 bp):
TCAACCCACCTCTCGCAATATGAGCTGATTTTGAAAAAGTAAAATTGAAAAGGT
Found at i:27068621 original size:54 final size:54
Alignment explanation
Indices: 27068521--27068626 Score: 144
Period size: 54 Copynumber: 1.9 Consensus size: 54
27068511 GACCTGAGGC
*
27068521 TCAACTCACCTCTCGCAATATGAGCTGATTTTGAAAAAGTAGAAATT-AAAAGGT
1 TCAACCCACCTCTCGCAATATGAGCTGATTTTGAAAAAGTA-AAATTGAAAAGGT
* *
27068575 TCAACCCACCTCTCGCAATATGAGTTGATTCTTGAACAACGT-AAATTGAAAA
1 TCAACCCACCTCTCGCAATATGAGCTGATT-TTGAA-AAAGTAAAATTGAAAA
27068627 CAAAATTGAA
Statistics
Matches: 46, Mismatches: 3, Indels: 5
0.85 0.06 0.09
Matches are distributed among these distances:
54 33 0.72
55 9 0.20
56 4 0.09
ACGTcount: A:0.38, C:0.20, G:0.15, T:0.27
Consensus pattern (54 bp):
TCAACCCACCTCTCGCAATATGAGCTGATTTTGAAAAAGTAAAATTGAAAAGGT
Found at i:27068808 original size:138 final size:140
Alignment explanation
Indices: 27068341--27068821 Score: 891
Period size: 140 Copynumber: 3.5 Consensus size: 140
27068331 GCAATATGAG
* * *
27068341 TTGAACACAGAAATTG-ACATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAG
1 TTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
27068405 CTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCA-CTCTCGCAATATGAGTTGATTCTTGA
66 CTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCTTGA
27068469 ACAACGTAAA
131 ACAACGTAAA
27068479 TTGAAAACAGAAATTGAAAATACCTTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAAACAGAAATTGAAAATACC-TCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGA
27068544 GCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCTTG
65 GCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCTTG
27068609 AACAACGTAAA
130 AACAACGTAAA
27068620 TTGAAAACA-AAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
1 TTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
27068684 CTGATTTTG-AAAAGTAGAAATT-AAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCTTGA
66 CTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCTTGA
27068747 ACAACGTAAA
131 ACAACGTAAA
27068757 TTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
1 TTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
27068822 TTGAAAAAAA
Statistics
Matches: 336, Mismatches: 3, Indels: 8
0.97 0.01 0.02
Matches are distributed among these distances:
137 60 0.18
138 83 0.25
139 56 0.17
140 92 0.27
141 45 0.13
ACGTcount: A:0.36, C:0.22, G:0.17, T:0.25
Consensus pattern (140 bp):
TTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
CTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCTTGA
ACAACGTAAA
Found at i:27068992 original size:121 final size:123
Alignment explanation
Indices: 27068794--27069038 Score: 379
Period size: 121 Copynumber: 2.0 Consensus size: 123
27068784 GCGTGACCTG
* *
27068794 AGGCTCAACTCACCTCTCGCAATATGAGTTGAAAAAAACACAAAAATTGAAAATACCTCAGCGTA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTCAAAAAAACACAAAAACTGAAAATACCTCAGCGTA
27068859 CCCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAAACAAAAATTAAA
66 CCCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAAACAAAAATTAAA
* ** *
27068917 AGGCTTAACTCACCTCTCGCAATATGAG-TCAATTTAAA-ACATAAACT-AAAATACCTCAGCGT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTCAA-AAAAACACAAAAACTGAAAATACCTCAGCGT
* * *
27068979 GCCCCGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTGAAAAACAAAAATTAAA
65 ACCCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAAACAAAAATTAAA
27069038 A
1 A
27069039 ATACCTCAAC
Statistics
Matches: 112, Mismatches: 9, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
121 72 0.64
122 10 0.09
123 30 0.27
ACGTcount: A:0.40, C:0.23, G:0.13, T:0.24
Consensus pattern (123 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTCAAAAAAACACAAAAACTGAAAATACCTCAGCGTA
CCCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAAACAAAAATTAAA
Found at i:27069065 original size:72 final size:69
Alignment explanation
Indices: 27068916--27069092 Score: 203
Period size: 72 Copynumber: 2.5 Consensus size: 69
27068906 CAAAAATTAA
* * * * * *
27068916 AAGGCTTAACTCACCTCTCGCAATATGAG-TCAATTTAAAACATAAACTAAAATACCTCAGCGTG
1 AAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTAAAACAAAAACTAAAATACCTCAACGTG
27068980 CCCC
66 CCCC
* *
27068984 GAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTGAAAAACAAAAATTAAAAATACCTCAAC
1 AAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTT--AAAACAAAAACT-AAAATACCTCAAC
** **
27069049 GTTTCTT
63 GTGCCCC
27069056 AAGGCTCAACTCATCTTCTCGCAATATGAGTTGATTT
1 AAGGCTCAACTCA-CTTCTCGCAATATGAGTTGATTT
27069093 CCTTGAAAAG
Statistics
Matches: 91, Mismatches: 13, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
68 26 0.29
69 5 0.05
71 10 0.11
72 27 0.30
73 23 0.25
ACGTcount: A:0.35, C:0.23, G:0.13, T:0.29
Consensus pattern (69 bp):
AAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTAAAACAAAAACTAAAATACCTCAACGTG
CCCC
Found at i:27082060 original size:24 final size:23
Alignment explanation
Indices: 27082014--27082058 Score: 74
Period size: 22 Copynumber: 2.0 Consensus size: 23
27082004 GGTTTCTTAG
27082014 TTTTTTTTTGGGGTTAGGTTTTTC
1 TTTTTTTTT-GGGTTAGGTTTTTC
27082038 TTTTTTTTT-GGTTAGGTTTTT
1 TTTTTTTTTGGGTTAGGTTTTT
27082059 TTTGGAGGCT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
22 12 0.57
24 9 0.43
ACGTcount: A:0.04, C:0.02, G:0.22, T:0.71
Consensus pattern (23 bp):
TTTTTTTTTGGGTTAGGTTTTTC
Found at i:27090351 original size:31 final size:31
Alignment explanation
Indices: 27090316--27090374 Score: 91
Period size: 31 Copynumber: 1.9 Consensus size: 31
27090306 TCGGTGATTT
* * *
27090316 AAATAAAAACTTTTGAATAGTTCCATGACTG
1 AAATAAAAACTTTCGAATAATTCAATGACTG
27090347 AAATAAAAACTTTCGAATAATTCAATGA
1 AAATAAAAACTTTCGAATAATTCAATGA
27090375 TCAAATTGTA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
31 25 1.00
ACGTcount: A:0.47, C:0.12, G:0.10, T:0.31
Consensus pattern (31 bp):
AAATAAAAACTTTCGAATAATTCAATGACTG
Done.