Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102776486
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2328156 characters in sequence are not A, C, G, or T
File 97 of 325
Found at i:31763683 original size:5 final size:5
Alignment explanation
Indices: 31763670--31763700 Score: 53
Period size: 5 Copynumber: 6.2 Consensus size: 5
31763660 GCTCGTAATT
*
31763670 AAAAA AAAAG AAAAG AAAAG AAAAG AAAAG A
1 AAAAG AAAAG AAAAG AAAAG AAAAG AAAAG A
31763701 GAGCACCTGT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
5 25 1.00
ACGTcount: A:0.84, C:0.00, G:0.16, T:0.00
Consensus pattern (5 bp):
AAAAG
Found at i:31764586 original size:15 final size:16
Alignment explanation
Indices: 31764559--31764588 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
31764549 AAAATGTGTT
31764559 TTAATTCTTAATTTAA
1 TTAATTCTTAATTTAA
31764575 TTAATT-TTAATTTA
1 TTAATTCTTAATTTA
31764589 TTCCCCATTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 8 0.57
16 6 0.43
ACGTcount: A:0.37, C:0.03, G:0.00, T:0.60
Consensus pattern (16 bp):
TTAATTCTTAATTTAA
Found at i:31766851 original size:17 final size:19
Alignment explanation
Indices: 31766810--31766851 Score: 54
Period size: 19 Copynumber: 2.4 Consensus size: 19
31766800 CTAGTAATGT
31766810 TAAA-ATATATATAATATA
1 TAAATATATATATAATATA
*
31766828 TACATATATATATAA-A-A
1 TAAATATATATATAATATA
31766845 TAAATAT
1 TAAATAT
31766852 TGAAAATTGT
Statistics
Matches: 21, Mismatches: 2, Indels: 3
0.81 0.08 0.12
Matches are distributed among these distances:
17 7 0.33
18 4 0.19
19 10 0.48
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.38
Consensus pattern (19 bp):
TAAATATATATATAATATA
Found at i:31767198 original size:3 final size:3
Alignment explanation
Indices: 31767138--31767189 Score: 77
Period size: 3 Copynumber: 16.7 Consensus size: 3
31767128 AAGTACCTAT
*
31767138 TAA TAA TAT TATA TAAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TA-A T-AA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
31767185 TAA TA
1 TAA TA
31767190 GCAATAATAG
Statistics
Matches: 45, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
3 41 0.91
4 3 0.07
5 1 0.02
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (3 bp):
TAA
Found at i:31767420 original size:13 final size:13
Alignment explanation
Indices: 31767402--31767441 Score: 62
Period size: 13 Copynumber: 3.0 Consensus size: 13
31767392 ATTAAGTATA
31767402 GTATAAATAATAT
1 GTATAAATAATAT
31767415 GTATAACATAATAT
1 GTATAA-ATAATAT
*
31767429 TTATAAATAATAT
1 GTATAAATAATAT
31767442 TAATAATAAT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
13 13 0.52
14 12 0.48
ACGTcount: A:0.53, C:0.03, G:0.05, T:0.40
Consensus pattern (13 bp):
GTATAAATAATAT
Found at i:31767446 original size:9 final size:9
Alignment explanation
Indices: 31767379--31767541 Score: 50
Period size: 9 Copynumber: 17.6 Consensus size: 9
31767369 GTAGTAAATG
*
31767379 TAATAATAA
1 TAATATTAA
31767388 TAATATTAA
1 TAATATTAA
*
31767397 GTATAGTATAAA
1 -TA-A-TATTAA
31767409 TAATATGT-A
1 TAATAT-TAA
*
31767418 TAACA-TAA
1 TAATATTAA
* *
31767426 TATTTATAAA
1 TA-ATATTAA
31767436 TAATATTAA
1 TAATATTAA
31767445 T-A-A-TAA
1 TAATATTAA
31767451 TAATGA-TAA
1 TAAT-ATTAA
* *
31767460 TGATAATAA
1 TAATATTAA
31767469 TAATATTAA
1 TAATATTAA
*
31767478 GTATAGTATAAA
1 -TA-A-TATTAA
31767490 TAATATGTACA
1 TAATAT-TA-A
* *
31767501 TAACAGTAA
1 TAATATTAA
* *
31767510 TAATAATAG
1 TAATATTAA
* *
31767519 TAACAATAA
1 TAATATTAA
*
31767528 TAATAATAA
1 TAATATTAA
31767537 TAATA
1 TAATA
31767542 ATATAGAAAT
Statistics
Matches: 116, Mismatches: 22, Indels: 32
0.68 0.13 0.19
Matches are distributed among these distances:
6 4 0.03
7 3 0.03
8 5 0.04
9 70 0.60
10 13 0.11
11 11 0.09
12 10 0.09
ACGTcount: A:0.56, C:0.02, G:0.06, T:0.36
Consensus pattern (9 bp):
TAATATTAA
Found at i:31767448 original size:3 final size:3
Alignment explanation
Indices: 31767434--31767544 Score: 82
Period size: 3 Copynumber: 36.3 Consensus size: 3
31767424 AATATTTATA
* * * *
31767434 AAT AAT ATT AAT AAT AAT AAT GAT AAT GAT AAT AAT AAT ATT AAGT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA-T
* * * * * *
31767480 -AT AGT -AT AAAT AAT ATGT ACAT AAC AGT AAT AAT AAT AGT AAC AAT
1 AAT AAT AAT -AAT AAT A-AT A-AT AAT AAT AAT AAT AAT AAT AAT AAT
31767526 AAT AAT AAT AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT A
31767545 TAGAAATTCA
Statistics
Matches: 82, Mismatches: 21, Indels: 10
0.73 0.19 0.09
Matches are distributed among these distances:
2 2 0.02
3 73 0.89
4 7 0.09
ACGTcount: A:0.58, C:0.03, G:0.06, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:31767599 original size:15 final size:16
Alignment explanation
Indices: 31767566--31767598 Score: 52
Period size: 14 Copynumber: 2.2 Consensus size: 16
31767556 AAAAACTAAC
31767566 AAATATAATAATATTA
1 AAATATAATAATATTA
31767582 AAATA-AATAAT-TTA
1 AAATATAATAATATTA
31767596 AAA
1 AAA
31767599 AATACTATGT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 6 0.35
15 6 0.35
16 5 0.29
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (16 bp):
AAATATAATAATATTA
Found at i:31769555 original size:73 final size:74
Alignment explanation
Indices: 31769465--31770286 Score: 624
Period size: 72 Copynumber: 11.0 Consensus size: 74
31769455 AATTGGAAAG
* * *
31769465 CAGAAATTGAAAATACCTCAGCGTGCCCTGACGTTCAACTCACCTCTCGCAATATGAGTTGA-TT
1 CAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
31769529 TTTGAAAAA
66 TTTGAAAAA
* * *
31769538 CAGAAATTGAAATTACCTCAGCGCGTCCTGAGGCTCAACTCCCCTCTCGC-A-ATGAGTTGATTT
1 CAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TT
*
31769601 TTTTGAAAGA
65 TTTTGAAAAA
* * * **
31769611 CAAAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTT
1 CAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TT
31769676 TTTTG-AAAA
65 TTTTGAAAAA
* * * * ** * *
31769685 TAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGAAATATGAGTTGA-AT
1 CAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
31769749 TTTG--AAA
66 TTTGAAAAA
* * ** * *** * * *
31769756 CATAAATTAAGAAACAAAAAT-TGCCAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGC
1 CAGAAATT--GAAA-ATACCTCAGCGTGT-CCT--GAG-G-CTC-A---AC---TCACCTCTCGC
* *
31769820 ATTATGAGTTGATTTTTTTTTTGAAAGA
51 AATATGAGTTGA----TTTTTTGAAAAA
* * *
31769848 TAGAAATTGAAAATAACTCAGCATGTGAACC-GAGGCTCAACTCACCTCTCGCAATATGAGTTGA
1 CAGAAATTGAAAATACCTCAGC--GTG-TCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
31769912 -TTTTTG-AAAA
63 TTTTTTGAAAAA
* * * * * * *
31769922 CATAAATTGGAAATACCTCAACGTGTCTTGAGGTTCAACTCA-TTACTCGCAATATGAGTTGA-A
1 CAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCT-CTCGCAATATGAGTTGATT
31769985 TTTTG-AAAA
65 TTTTGAAAAA
*
31769994 CAGAAATT-AAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTCGATT
1 CAGAAATTGAAAA-TACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA--
31770058 TTTTTTTGAAAAA
63 -TTTTTTGAAAAA
* * * * ** * *
31770071 CAAAAATTGAAAATACCTCAACATGTCTTGAGGCTCAACTCATTTCTCGCAATCTGAGTTGA-AT
1 CAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
31770135 TTTG-AAAA
66 TTTGAAAAA
* * * ** *
31770143 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGA-AT
1 CAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
31770207 TTTG-AAAA
66 TTTGAAAAA
* * * * * ** * *
31770215 TAGAAA-TAAAAATTACCTCAACGTGTCTTGAGACTCAACTCATTTCTCGTAATATGAGTTGA-A
1 CAGAAATTGAAAA-TACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATT
31770278 TTTTGAAAA
65 TTTTGAAAA
31770287 TAGAAATAAA
Statistics
Matches: 613, Mismatches: 94, Indels: 84
0.77 0.12 0.11
Matches are distributed among these distances:
71 27 0.04
72 226 0.37
73 111 0.18
74 84 0.14
75 23 0.04
76 7 0.01
77 54 0.09
78 6 0.01
79 1 0.00
80 22 0.04
82 1 0.00
83 1 0.00
85 19 0.03
86 1 0.00
87 2 0.00
88 1 0.00
89 6 0.01
90 11 0.02
92 10 0.02
ACGTcount: A:0.34, C:0.20, G:0.16, T:0.31
Consensus pattern (74 bp):
CAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
TTTGAAAAA
Found at i:31770109 original size:149 final size:147
Alignment explanation
Indices: 31769468--31770299 Score: 842
Period size: 149 Copynumber: 5.6 Consensus size: 147
31769458 TGGAAAGCAG
* * * * * ** *
31769468 AAATTGAAAATACCTCAGCGTGCCCTGACGTTCAACTCACCTCTCGCAATATGAGTTGATTTTTG
1 AAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTG
* * *
31769533 AAAAACAGAAATTGAAATTACCTCAGCGCGTCCTGAGGCTCAACTCCCCTCTCGC-A-ATGAGTT
66 -AAAACAGAAATTAAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
*
31769596 GATTTTTTTGAAAGACAA
130 GATTTTTTTGAAAAACAA
* * *
31769614 AAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTT
1 AAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGA--ATTT
* * * * ** *
31769679 TGAAAATAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGAAATATGAGT
64 TGAAAACAGAAATTAAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGT
31769744 TGAATTTTGAAACATAAATT-AAGAAACAA
129 TG-ATTTT------T---TTGAA-AAACAA
** * * ** ** * *
31769773 AAATTGCCAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTT
1 AAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGA-----A
* * *
31769838 TTTTGAAAGATAGAAATTGAAAA-TAACTCAGCATGTGAACC-GAGGCTCAACTCACCTCTCGCA
61 TTTTGAAA-ACAGAAATT-AAAATTACCTCAGC--GTG-TCCTGAGGCTCAACTCACCTCTCGCA
*
31769901 ATATGAGTTGA--TTTTTG-AAAACAT
121 ATATGAGTTGATTTTTTTGAAAAACAA
* * *
31769925 AAATTGGAAATACCTCAACGTGTCTTGAGGTTCAACTCATTACTCGCAATATGAGTTGAATTTTG
1 AAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTG
*
31769990 AAAACAGAAATTAAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTCG
66 AAAACAGAAATTAAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTG
31770055 ATTTTTTTTTGAAAAACAA
131 A--TTTTTTTGAAAAACAA
* *
31770074 AAATTGAAAATACCTCAACATGTCTTGAGGCTCAACTCATTTCTCGCAATCTGAGTTGAATTTTG
1 AAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTG
* * * **
31770139 AAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTG
66 AAAACAGAAATTAAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTG
* * *
31770204 A--ATTTTG-AAAATAG
131 ATTTTTTTGAAAAACAA
* * *
31770218 AAA-TAAAAATTACCTCAACGTGTCTTGAGACTCAACTCATTTCTCGTAATATGAGTTGAATTTT
1 AAATTGAAAA-TACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTT
* *
31770282 GAAAATAGAAATAAAAAT
65 GAAAACAGAAATTAAAAT
31770300 ATCAAAATAC
Statistics
Matches: 581, Mismatches: 73, Indels: 66
0.81 0.10 0.09
Matches are distributed among these distances:
143 7 0.01
144 108 0.19
145 9 0.02
146 68 0.12
147 54 0.09
148 13 0.02
149 134 0.23
150 5 0.01
152 53 0.09
153 3 0.01
156 2 0.00
158 2 0.00
159 57 0.10
162 13 0.02
163 16 0.03
164 4 0.01
165 32 0.06
166 1 0.00
ACGTcount: A:0.34, C:0.19, G:0.16, T:0.31
Consensus pattern (147 bp):
AAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTG
AAAACAGAAATTAAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTG
ATTTTTTTGAAAAACAA
Found at i:31770169 original size:221 final size:222
Alignment explanation
Indices: 31769783--31770273 Score: 700
Period size: 221 Copynumber: 2.2 Consensus size: 222
31769773 AAATTGCCAA
* * * * *
31769783 TACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTTTTTTGAAAGA
1 TACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTCGATTTTTTTTTTGAAAAA
* * * *
31769848 TAGAAATTGAAAATAACTCAGCATGTGAACCGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
66 CAAAAATTGAAAATAACTCAACATGT--ACCGAGGCTCAACTCACCTCTCGCAATATGAGTTGAA
* *
31769913 TTTTGAAAACATAAATTGGAAATACCTCAACGTGTCTTGAGGTTCAACTCATTACTCGCAATATG
129 TTTTGAAAACAGAAATTGGAAATACCTCAACGTGTCTTGAGGCTCAACTCATTACTCGCAATATG
*
31769978 AGTTGAATTTTGAAAACAGAAATTAAAAT
194 AGTTGAATTTTGAAAACAGAAATAAAAAT
31770007 TACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTCGA-TTTTTTTTTGAAAAA
1 TACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTCGATTTTTTTTTTGAAAAA
* * ** *
31770071 CAAAAATTGAAAATACCTCAACATGT-CTTGAGGCTCAACTCATTTCTCGCAATCTGAGTTGAAT
66 CAAAAATTGAAAATAACTCAACATGTAC-CGAGGCTCAACTCACCTCTCGCAATATGAGTTGAAT
*
31770135 TTTGAAAACAGAAATT-GAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATG
130 TTTGAAAACAGAAATTGGAAA-TACCTCAACGTGTCTTGAGGCTCAACTCATTACTCGCAATATG
*
31770199 AGTTGAATTTTGAAAATAGAAATAAAAAT
194 AGTTGAATTTTGAAAACAGAAATAAAAAT
* * * ** *
31770228 TACCTCAACGTGTCTTGAGACTCAACTCATTTCTCGTAATATGAGT
1 TACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGT
31770274 TGAATTTTGA
Statistics
Matches: 240, Mismatches: 25, Indels: 7
0.88 0.09 0.03
Matches are distributed among these distances:
220 5 0.02
221 154 0.64
223 36 0.15
224 45 0.19
ACGTcount: A:0.33, C:0.20, G:0.16, T:0.31
Consensus pattern (222 bp):
TACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTCGATTTTTTTTTTGAAAAA
CAAAAATTGAAAATAACTCAACATGTACCGAGGCTCAACTCACCTCTCGCAATATGAGTTGAATT
TTGAAAACAGAAATTGGAAATACCTCAACGTGTCTTGAGGCTCAACTCATTACTCGCAATATGAG
TTGAATTTTGAAAACAGAAATAAAAAT
Found at i:31800158 original size:24 final size:24
Alignment explanation
Indices: 31800126--31800172 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 24
31800116 TTATAACATG
* * *
31800126 AAAATGACCGTTTTGCCCCTAGGT
1 AAAATGACCATTATACCCCTAGGT
31800150 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
31800173 GTTTATATAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.32, C:0.26, G:0.17, T:0.26
Consensus pattern (24 bp):
AAAATGACCATTATACCCCTAGGT
Found at i:31800223 original size:9 final size:9
Alignment explanation
Indices: 31800211--31800267 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
31800201 TTTGATAAAC
31800211 ATGATATGT
1 ATGATATGT
*
31800220 ATGATATGCAC
1 ATGATATG--T
*
31800231 ATGACATGT
1 ATGATATGT
*
31800240 ATGATATGCAC
1 ATGATATG--T
31800251 ATGATATGT
1 ATGATATGT
31800260 ATGATATG
1 ATGATATG
31800268 CACATGAGAT
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.09, G:0.21, T:0.35
Consensus pattern (9 bp):
ATGATATGT
Found at i:31800234 original size:20 final size:20
Alignment explanation
Indices: 31800209--31800279 Score: 124
Period size: 20 Copynumber: 3.5 Consensus size: 20
31800199 ATTTTGATAA
31800209 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
31800229 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
31800249 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
31800269 ACATGAGATGT
1 ACATGATATGT
31800280 TCATAAATGC
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 48 1.00
ACGTcount: A:0.35, C:0.11, G:0.21, T:0.32
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:31800256 original size:11 final size:11
Alignment explanation
Indices: 31800220--31800274 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
31800210 CATGATATGT
31800220 ATGATATGCAC
1 ATGATATGCAC
* *
31800231 ATGACATG--T
1 ATGATATGCAC
31800240 ATGATATGCAC
1 ATGATATGCAC
*
31800251 ATGATATG--T
1 ATGATATGCAC
31800260 ATGATATGCAC
1 ATGATATGCAC
31800271 ATGA
1 ATGA
31800275 GATGTTCATA
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.36, C:0.13, G:0.20, T:0.31
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:31800370 original size:23 final size:24
Alignment explanation
Indices: 31800336--31800475 Score: 181
Period size: 23 Copynumber: 6.1 Consensus size: 24
31800326 AAGGGTGCAG
31800336 TATT-AAAGGGCTTATGCCCCAGT
1 TATTAAAAGGGCTTATGCCCCAGT
31800359 TA-TAAAAGGGCTTATG-CCCAGT
1 TATTAAAAGGGCTTATGCCCCAGT
31800381 TATTAAAAGGGCTTATGCCCCAGT
1 TATTAAAAGGGCTTATGCCCCAGT
31800405 TATT-AAA--GCTTATG--CCAGT
1 TATTAAAAGGGCTTATGCCCCAGT
*
31800424 TATTAAAAGGGCTTTTGCCCCAGT
1 TATTAAAAGGGCTTATGCCCCAGT
*
31800448 TATTAAAAGAGGC-TAGGCCTCCAGT
1 TATTAAAAG-GGCTTATGCC-CCAGT
31800473 TAT
1 TAT
31800476 ATGATAAAGC
Statistics
Matches: 104, Mismatches: 3, Indels: 18
0.83 0.02 0.14
Matches are distributed among these distances:
19 9 0.09
20 3 0.03
21 7 0.07
22 15 0.14
23 31 0.30
24 28 0.27
25 11 0.11
ACGTcount: A:0.29, C:0.19, G:0.21, T:0.31
Consensus pattern (24 bp):
TATTAAAAGGGCTTATGCCCCAGT
Found at i:31800437 original size:43 final size:45
Alignment explanation
Indices: 31800336--31800454 Score: 190
Period size: 43 Copynumber: 2.7 Consensus size: 45
31800326 AAGGGTGCAG
*
31800336 TATT-AAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCAGT
1 TATTAAAAGGGCTTATGCCCCAGTTATTAAA-GGCTTATGCCCAGT
31800381 TATTAAAAGGGCTTATGCCCCAGTTATTAAA-GCTTATG-CCAGT
1 TATTAAAAGGGCTTATGCCCCAGTTATTAAAGGCTTATGCCCAGT
*
31800424 TATTAAAAGGGCTTTTGCCCCAGTTATTAAA
1 TATTAAAAGGGCTTATGCCCCAGTTATTAAA
31800455 AGAGGCTAGG
Statistics
Matches: 71, Mismatches: 2, Indels: 4
0.92 0.03 0.05
Matches are distributed among these distances:
43 35 0.49
44 7 0.10
45 4 0.06
46 25 0.35
ACGTcount: A:0.30, C:0.18, G:0.19, T:0.32
Consensus pattern (45 bp):
TATTAAAAGGGCTTATGCCCCAGTTATTAAAGGCTTATGCCCAGT
Found at i:31800700 original size:31 final size:31
Alignment explanation
Indices: 31800662--31800725 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
31800652 CGTTTACAGT
31800662 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
** *
31800693 AAAGGCTTCGGCCCAGTGTTATGAATTATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
31800724 AA
1 AA
31800726 TATGAAAAGG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.36, C:0.16, G:0.23, T:0.25
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:31808266 original size:25 final size:24
Alignment explanation
Indices: 31808232--31808279 Score: 69
Period size: 25 Copynumber: 2.0 Consensus size: 24
31808222 CTATAACATG
* *
31808232 AAAATGACCATTTTGCCCCTAGGT
1 AAAATGACCATTATACCCCTAGGT
31808256 AAAAGTGACCATTATACCCCTAGG
1 AAAA-TGACCATTATACCCCTAGG
31808280 GTTTATATAT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
24 4 0.19
25 17 0.81
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (24 bp):
AAAATGACCATTATACCCCTAGGT
Found at i:31808330 original size:9 final size:9
Alignment explanation
Indices: 31808318--31808374 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
31808308 TTTGATAAAC
31808318 ATGATATGT
1 ATGATATGT
*
31808327 ATGATATGCAC
1 ATGATATG--T
*
31808338 ATGACATGT
1 ATGATATGT
*
31808347 ATGATATGCAC
1 ATGATATG--T
31808358 ATGATATGT
1 ATGATATGT
31808367 ATGATATG
1 ATGATATG
31808375 CACATGAGAT
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.09, G:0.21, T:0.35
Consensus pattern (9 bp):
ATGATATGT
Found at i:31808341 original size:20 final size:20
Alignment explanation
Indices: 31808316--31808386 Score: 124
Period size: 20 Copynumber: 3.5 Consensus size: 20
31808306 ATTTTGATAA
31808316 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
31808336 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
31808356 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
31808376 ACATGAGATGT
1 ACATGATATGT
31808387 TCATAAATGC
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 48 1.00
ACGTcount: A:0.35, C:0.11, G:0.21, T:0.32
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:31808363 original size:11 final size:11
Alignment explanation
Indices: 31808327--31808381 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
31808317 CATGATATGT
31808327 ATGATATGCAC
1 ATGATATGCAC
* *
31808338 ATGACATG--T
1 ATGATATGCAC
31808347 ATGATATGCAC
1 ATGATATGCAC
*
31808358 ATGATATG--T
1 ATGATATGCAC
31808367 ATGATATGCAC
1 ATGATATGCAC
31808378 ATGA
1 ATGA
31808382 GATGTTCATA
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.36, C:0.13, G:0.20, T:0.31
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:31808488 original size:24 final size:24
Alignment explanation
Indices: 31808431--31808578 Score: 237
Period size: 24 Copynumber: 6.2 Consensus size: 24
31808421 GGAGGAAGTG
31808431 CAAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
*
31808455 -TAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
31808478 CAAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
31808502 CAAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
*
31808526 -TAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
* *
31808549 TAAAAGGGCTTTTGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
*
31808573 TAAAAG
1 CAAAAG
31808579 AGCTAGGCCT
Statistics
Matches: 117, Mismatches: 5, Indels: 4
0.93 0.04 0.03
Matches are distributed among these distances:
23 44 0.38
24 73 0.62
ACGTcount: A:0.29, C:0.22, G:0.21, T:0.28
Consensus pattern (24 bp):
CAAAAGGGCTTATGCCCCAGTTAT
Found at i:31808500 original size:47 final size:47
Alignment explanation
Indices: 31808431--31808578 Score: 235
Period size: 47 Copynumber: 3.1 Consensus size: 47
31808421 GGAGGAAGTG
31808431 CAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTAT
*
31808478 CAAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT-TAAAGGGCTTATGCCCCAGTTAT
* *
31808526 -TAAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTTTGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTATT-AAAGGGCTTATGCCCCAGTTAT
*
31808573 TAAAAG
1 CAAAAG
31808579 AGCTAGGCCT
Statistics
Matches: 93, Mismatches: 5, Indels: 5
0.90 0.05 0.05
Matches are distributed among these distances:
47 67 0.72
48 26 0.28
ACGTcount: A:0.29, C:0.22, G:0.21, T:0.28
Consensus pattern (47 bp):
CAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTAT
Found at i:31808547 original size:71 final size:71
Alignment explanation
Indices: 31808431--31808578 Score: 269
Period size: 71 Copynumber: 2.1 Consensus size: 71
31808421 GGAGGAAGTG
31808431 CAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCC
1 CAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCC
31808496 AGTTAT
66 AGTTAT
* *
31808502 CAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTTTGCCCC
1 CAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCC
31808567 AGTTAT
66 AGTTAT
*
31808573 TAAAAG
1 CAAAAG
31808579 AGCTAGGCCT
Statistics
Matches: 74, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
71 74 1.00
ACGTcount: A:0.29, C:0.22, G:0.21, T:0.28
Consensus pattern (71 bp):
CAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCC
AGTTAT
Found at i:31808821 original size:31 final size:31
Alignment explanation
Indices: 31808786--31808849 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
31808776 CGTTTACAGT
31808786 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
** *
31808817 AAAGGCTTCGGCCCAGTGTTATGAATTATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
31808848 AA
1 AA
31808850 TATGAAAAGG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.36, C:0.16, G:0.23, T:0.25
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:31809777 original size:24 final size:24
Alignment explanation
Indices: 31809750--31809882 Score: 119
Period size: 24 Copynumber: 5.5 Consensus size: 24
31809740 GAAATGACTT
31809750 TGGCACTATGTGTGCGAATTTGAA
1 TGGCACTATGTGTGCGAATTTGAA
* *
31809774 TGGCACTGTGTGTGCGAATTTGTA
1 TGGCACTATGTGTGCGAATTTGAA
* *
31809798 CGGCACTATGTGTGC-AGATTTGTA
1 TGGCACTATGTGTGCGA-ATTTGAA
** *
31809822 TGGCACTATGTGCACGGATTTGAA
1 TGGCACTATGTGTGCGAATTTGAA
* * * *
31809846 TGTCAATATGTATGTGAATTACT-AA
1 TGGCACTATGTGTGCGAATT--TGAA
31809871 -GGCACTATGTGT
1 TGGCACTATGTGT
31809883 ATGGGTAAAC
Statistics
Matches: 86, Mismatches: 19, Indels: 8
0.76 0.17 0.07
Matches are distributed among these distances:
23 1 0.01
24 82 0.95
25 2 0.02
26 1 0.01
ACGTcount: A:0.24, C:0.14, G:0.28, T:0.35
Consensus pattern (24 bp):
TGGCACTATGTGTGCGAATTTGAA
Found at i:31812701 original size:42 final size:42
Alignment explanation
Indices: 31812638--31812800 Score: 184
Period size: 42 Copynumber: 3.7 Consensus size: 42
31812628 CTTCGTTTTC
** *
31812638 TCGATGCCATAGTTCAACTATGGTCTTACACATCTTCACATAA
1 TCGATGCCATAGCCCAGCTATGGTCTTACACATCTTCACAT-A
* *
31812681 T-GATGCCATAGCCCAGCTATGGTCTTACACATATTCATATA
1 TCGATGCCATAGCCCAGCTATGGTCTTACACATCTTCACATA
* *
31812722 TCGATGCCATAGCCTAGCTATGGTTTTACACATAATCACATATCACATA
1 TCGATGCCATAGCCCAGCTATGGTCTTACAC---AT--C-T-TCACATA
31812771 TCGATGCCATAGCCCAGCTATGGTCTTACA
1 TCGATGCCATAGCCCAGCTATGGTCTTACA
31812801 AGAATCACAT
Statistics
Matches: 101, Mismatches: 11, Indels: 10
0.83 0.09 0.08
Matches are distributed among these distances:
41 2 0.02
42 61 0.60
43 1 0.01
45 2 0.02
48 1 0.01
49 34 0.34
ACGTcount: A:0.29, C:0.26, G:0.14, T:0.31
Consensus pattern (42 bp):
TCGATGCCATAGCCCAGCTATGGTCTTACACATCTTCACATA
Found at i:31812781 original size:49 final size:48
Alignment explanation
Indices: 31812708--31812844 Score: 170
Period size: 49 Copynumber: 2.9 Consensus size: 48
31812698 TATGGTCTTA
* * * *
31812708 CACATATTCATATATCGATGCCATAGCCTAGCTATGGTTTTACACATAAT
1 CACATA-TCACATATCGATGCCATAGCCCAGCTATGGTCTTACA-AGAAT
31812758 CACATATCACATATCGATGCCATAGCCCAGCTATGGTCTTACAAGAAT
1 CACATATCACATATCGATGCCATAGCCCAGCTATGGTCTTACAAGAAT
* * * *
31812806 CACATATCTCA-CT-GATGCCATATCCCAGATATGGTCTTA
1 CACATATCACATATCGATGCCATAGCCCAGCTATGGTCTTA
31812845 TACAGTAGCA
Statistics
Matches: 79, Mismatches: 8, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
46 24 0.30
47 1 0.01
48 14 0.18
49 34 0.43
50 6 0.08
ACGTcount: A:0.31, C:0.26, G:0.13, T:0.30
Consensus pattern (48 bp):
CACATATCACATATCGATGCCATAGCCCAGCTATGGTCTTACAAGAAT
Found at i:31812833 original size:46 final size:47
Alignment explanation
Indices: 31812723--31812891 Score: 151
Period size: 47 Copynumber: 3.6 Consensus size: 47
31812713 ATTCATATAT
* * * * * * * *
31812723 CGATGCCATAGCCTAGCTATGGTTTTACACATAATCACATATCACATAT
1 CGATGCCATATCCCAGATATGGTCTTACACAGAAGCACATA-C-CACAC
* * * * *
31812772 CGATGCCATAGCCCAGCTATGGTCTTACA-AGAATCACATATCTCAC
1 CGATGCCATATCCCAGATATGGTCTTACACAGAAGCACATACCACAC
* * * *
31812818 TGATGCCATATCCCAGATATGGTCTTATACAGTAGCATATACCACAC
1 CGATGCCATATCCCAGATATGGTCTTACACAGAAGCACATACCACAC
*
31812865 CAATGCCATATCCCAGATATGGTCTTA
1 CGATGCCATATCCCAGATATGGTCTTA
31812892 TACCCTACAA
Statistics
Matches: 101, Mismatches: 18, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
46 27 0.27
47 37 0.37
48 10 0.10
49 27 0.27
ACGTcount: A:0.31, C:0.27, G:0.14, T:0.28
Consensus pattern (47 bp):
CGATGCCATATCCCAGATATGGTCTTACACAGAAGCACATACCACAC
Found at i:31814993 original size:42 final size:41
Alignment explanation
Indices: 31814932--31815092 Score: 135
Period size: 42 Copynumber: 3.7 Consensus size: 41
31814922 TCGTTTTCTC
** *
31814932 GATGCCATAGTTCAACTATGGTCTTACACATCTTCACTTAAT
1 GATGCCATAGCCCAGCTATGGTCTTACACATCTTCAC-TAAT
*
31814974 GATGCCATAGCCCAGCTATGGTCTTACACATATTCA-TATAT
1 GATGCCATAGCCCAGCTATGGTCTTACACATCTTCACTA-AT
** * *
31815015 CGATGCCATAGCATAGCTATAGTCTTACACGTAATCAGATATCACATATT
1 -GATGCCATAGCCCAGCTATGGTCTTACAC---ATC---T-TCAC-TAAT
*
31815065 GATGCCATATCCCAGCTATGGTCTTACA
1 GATGCCATAGCCCAGCTATGGTCTTACA
31815093 AGAATCACAT
Statistics
Matches: 95, Mismatches: 13, Indels: 15
0.77 0.11 0.12
Matches are distributed among these distances:
40 2 0.02
41 2 0.02
42 58 0.61
45 2 0.02
48 1 0.01
49 27 0.28
50 1 0.01
51 2 0.02
ACGTcount: A:0.30, C:0.24, G:0.14, T:0.32
Consensus pattern (41 bp):
GATGCCATAGCCCAGCTATGGTCTTACACATCTTCACTAAT
Found at i:31815070 original size:49 final size:48
Alignment explanation
Indices: 31815000--31815105 Score: 122
Period size: 49 Copynumber: 2.2 Consensus size: 48
31814990 TATGGTCTTA
* * *
31815000 CACATATTCATATATCGATGCCATAGCATAGCTATAGTCTTACACGTAAT
1 CACATA-TCACATATCGATGCCATAGCACAGCTATAGTCTTACAAG-AAT
* * * * *
31815050 CAGATATCACATATTGATGCCATATCCCAGCTATGGTCTTACAAGAAT
1 CACATATCACATATCGATGCCATAGCACAGCTATAGTCTTACAAGAAT
31815098 CACATATC
1 CACATATC
31815106 TCACTGATGC
Statistics
Matches: 47, Mismatches: 9, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
48 10 0.21
49 32 0.68
50 5 0.11
ACGTcount: A:0.34, C:0.24, G:0.12, T:0.30
Consensus pattern (48 bp):
CACATATCACATATCGATGCCATAGCACAGCTATAGTCTTACAAGAAT
Found at i:31815170 original size:47 final size:47
Alignment explanation
Indices: 31815065--31815190 Score: 182
Period size: 47 Copynumber: 2.7 Consensus size: 47
31815055 ATCACATATT
* * * * *
31815065 GATGCCATATCCCAGCTATGGTCTTACA-AGAATCACATATCTCACT
1 GATGCCATATCCCAGATATGGTCTTATACAGAAGCACATATCACACC
* *
31815111 GATGCCATATCCCAGATATGGTCTTATACAGTAGCATATATCACACC
1 GATGCCATATCCCAGATATGGTCTTATACAGAAGCACATATCACACC
31815158 GATGCCATATCCCAGATATGGTCTTATACAGAA
1 GATGCCATATCCCAGATATGGTCTTATACAGAA
31815191 ATCATTTGTC
Statistics
Matches: 71, Mismatches: 8, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
46 26 0.37
47 45 0.63
ACGTcount: A:0.32, C:0.25, G:0.15, T:0.28
Consensus pattern (47 bp):
GATGCCATATCCCAGATATGGTCTTATACAGAAGCACATATCACACC
Found at i:31815248 original size:31 final size:31
Alignment explanation
Indices: 31815207--31815353 Score: 195
Period size: 31 Copynumber: 4.7 Consensus size: 31
31815197 TGTCACTTGC
* *
31815207 AGCCGAAGCTACCACTATTCACTGAACAGGT
1 AGCCGAAGCTACCACTTTTCACTGATCAGGT
* * *
31815238 AGCCGGAGCTACCATTTTTCACTGATCAAGT
1 AGCCGAAGCTACCACTTTTCACTGATCAGGT
* * *
31815269 AGCTGGAGCTGCCACTTTTCACTGATCAGGT
1 AGCCGAAGCTACCACTTTTCACTGATCAGGT
* * *
31815300 AGCAGAAGCTACCACTTTCCACTGATTAGGT
1 AGCCGAAGCTACCACTTTTCACTGATCAGGT
31815331 AGCCGAAGCTACCACTTTTCACT
1 AGCCGAAGCTACCACTTTTCACT
31815354 TGTCATTTGT
Statistics
Matches: 100, Mismatches: 16, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
31 100 1.00
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.26
Consensus pattern (31 bp):
AGCCGAAGCTACCACTTTTCACTGATCAGGT
Found at i:31815435 original size:50 final size:51
Alignment explanation
Indices: 31815329--31815457 Score: 206
Period size: 50 Copynumber: 2.5 Consensus size: 51
31815319 CACTGATTAG
* * *
31815329 GTAGCCGAAGCTACCACTTTTCACTTGTCATTTGTCCTTAATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTTGTCACTTGTCCTTAATCAGATAAGT
* *
31815380 GTAGCCGAAGCTATCACTTATCACTT-TCACTTGTCTTTGATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTTGTCACTTGTCCTTAATCAGATAAGT
31815430 GTAGCCGAAGCTATCACTTATCACTTGT
1 GTAGCCGAAGCTATCACTTATCACTTGT
31815458 TGCCATGGTC
Statistics
Matches: 72, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
50 47 0.65
51 25 0.35
ACGTcount: A:0.26, C:0.23, G:0.16, T:0.35
Consensus pattern (51 bp):
GTAGCCGAAGCTATCACTTATCACTTGTCACTTGTCCTTAATCAGATAAGT
Found at i:31819407 original size:42 final size:42
Alignment explanation
Indices: 31819357--31819519 Score: 166
Period size: 42 Copynumber: 3.7 Consensus size: 42
31819347 CTTCATTTTC
** * * *
31819357 TCGATGCCATAGTTCAACTATGGTCTTACACATCTTCACATAA
1 TCGATGCCATAGCACAGCTATGGTCTTACACATATTCAAAT-A
*
31819400 T-GATGCCATAGCCCAGCTATGGTCTTACACATATTCAAATA
1 TCGATGCCATAGCACAGCTATGGTCTTACACATATTCAAATA
* *
31819441 TCGATGCCATAGCACAGCTATAGTCTTACACGTAATCACATATCACATA
1 TCGATGCCATAGCACAGCTATGGTCTTACAC---AT---AT-TCAAATA
*
31819490 TCGATGCCATAGCCCAGCTATGGTCTTACA
1 TCGATGCCATAGCACAGCTATGGTCTTACA
31819520 AGAATCACAT
Statistics
Matches: 102, Mismatches: 10, Indels: 10
0.84 0.08 0.08
Matches are distributed among these distances:
41 2 0.02
42 61 0.60
43 1 0.01
45 2 0.02
48 2 0.02
49 34 0.33
ACGTcount: A:0.31, C:0.26, G:0.14, T:0.29
Consensus pattern (42 bp):
TCGATGCCATAGCACAGCTATGGTCTTACACATATTCAAATA
Found at i:31819500 original size:49 final size:48
Alignment explanation
Indices: 31819427--31819532 Score: 158
Period size: 49 Copynumber: 2.2 Consensus size: 48
31819417 TATGGTCTTA
*
31819427 CACATATTCAAATATCGATGCCATAGCACAGCTATAGTCTTACACGTAAT
1 CACATA-TCAAATATCGATGCCATAGCACAGCTATAGTCTTACAAG-AAT
* * *
31819477 CACATATCACATATCGATGCCATAGCCCAGCTATGGTCTTACAAGAAT
1 CACATATCAAATATCGATGCCATAGCACAGCTATAGTCTTACAAGAAT
31819525 CACATATC
1 CACATATC
31819533 TCACTGATGC
Statistics
Matches: 52, Mismatches: 4, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
48 11 0.21
49 35 0.67
50 6 0.12
ACGTcount: A:0.35, C:0.26, G:0.12, T:0.26
Consensus pattern (48 bp):
CACATATCAAATATCGATGCCATAGCACAGCTATAGTCTTACAAGAAT
Found at i:31819558 original size:46 final size:47
Alignment explanation
Indices: 31819442--31819610 Score: 171
Period size: 47 Copynumber: 3.6 Consensus size: 47
31819432 ATTCAAATAT
* * * * * *
31819442 CGATGCCATAGCACAGCTATAGTCTTACAC-GTAATCACATATCACATAT
1 CGATGCCATATCCCAGATATGGTCTTACACAG-AAGCACATATCAC--AC
* * * *
31819491 CGATGCCATAGCCCAGCTATGGTCTTACA-AGAATCACATATCTCAC
1 CGATGCCATATCCCAGATATGGTCTTACACAGAAGCACATATCACAC
* * * *
31819537 TGATGCCATATCCCAGATATGGTCTTATACAGTAGCATATATCACAC
1 CGATGCCATATCCCAGATATGGTCTTACACAGAAGCACATATCACAC
31819584 CGATGCCATATCCCAGATATGGTCTTA
1 CGATGCCATATCCCAGATATGGTCTTA
31819611 TACGAAAATC
Statistics
Matches: 105, Mismatches: 13, Indels: 6
0.85 0.10 0.05
Matches are distributed among these distances:
46 26 0.25
47 39 0.37
48 12 0.11
49 28 0.27
ACGTcount: A:0.31, C:0.27, G:0.15, T:0.27
Consensus pattern (47 bp):
CGATGCCATATCCCAGATATGGTCTTACACAGAAGCACATATCACAC
Found at i:31819667 original size:31 final size:31
Alignment explanation
Indices: 31819632--31819780 Score: 172
Period size: 31 Copynumber: 4.8 Consensus size: 31
31819622 CTTGTCACTT
* *
31819632 GTAGCTGAAGCTACCACTATTCACTGAACAG
1 GTAGCTGAAGCTACCACTTTTCACTGATCAG
* * *
31819663 GTAGCCGGAGCTACCATTTTTCACTGATCAG
1 GTAGCTGAAGCTACCACTTTTCACTGATCAG
* *
31819694 GTAGCTGGAGCTACGACTTTTCACTGATCAG
1 GTAGCTGAAGCTACCACTTTTCACTGATCAG
* * *
31819725 GTAACAGAAGCTACCACTTTTCACTGATTAG
1 GTAGCTGAAGCTACCACTTTTCACTGATCAG
** * *
31819756 GTAGCCAAAACTATCACTTTTCACT
1 GTAGCTGAAGCTACCACTTTTCACT
31819781 TGTCATTTGT
Statistics
Matches: 100, Mismatches: 18, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
31 100 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (31 bp):
GTAGCTGAAGCTACCACTTTTCACTGATCAG
Found at i:31819855 original size:50 final size:51
Alignment explanation
Indices: 31819756--31819884 Score: 197
Period size: 50 Copynumber: 2.5 Consensus size: 51
31819746 CACTGATTAG
* * * *
31819756 GTAGCCAAAACTATCACTTTTCACTTGTCATTTGTCCTTGATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTTGTCACTTGTCCTTGATCAGATAAGT
* *
31819807 GTAGCCGAAGCTGTCACTTATCACTT-TCACTTGTCTTTGATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTTGTCACTTGTCCTTGATCAGATAAGT
31819857 GTAGCCGAAGCTATCACTTATCACTTGT
1 GTAGCCGAAGCTATCACTTATCACTTGT
31819885 TGCCATGGTC
Statistics
Matches: 70, Mismatches: 7, Indels: 2
0.89 0.09 0.03
Matches are distributed among these distances:
50 47 0.67
51 23 0.33
ACGTcount: A:0.26, C:0.22, G:0.16, T:0.36
Consensus pattern (51 bp):
GTAGCCGAAGCTATCACTTATCACTTGTCACTTGTCCTTGATCAGATAAGT
Found at i:31824157 original size:13 final size:13
Alignment explanation
Indices: 31824139--31824167 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
31824129 AGGTGTAACT
31824139 ACATGGGCTGCTC
1 ACATGGGCTGCTC
31824152 ACATGGGCTGCTC
1 ACATGGGCTGCTC
31824165 ACA
1 ACA
31824168 CAAGCTGTCA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.21, C:0.31, G:0.28, T:0.21
Consensus pattern (13 bp):
ACATGGGCTGCTC
Found at i:31824722 original size:18 final size:17
Alignment explanation
Indices: 31824699--31824732 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
31824689 TAACTTGTTT
*
31824699 ATCAATCACATTATTCAA
1 ATCAATC-CATAATTCAA
31824717 ATCAATCCATAATTCA
1 ATCAATCCATAATTCA
31824733 TGCTTTGGTA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 8 0.53
18 7 0.47
ACGTcount: A:0.44, C:0.24, G:0.00, T:0.32
Consensus pattern (17 bp):
ATCAATCCATAATTCAA
Found at i:31837772 original size:55 final size:55
Alignment explanation
Indices: 31837704--31837811 Score: 162
Period size: 55 Copynumber: 2.0 Consensus size: 55
31837694 ACAGGTTCGA
* *
31837704 CCACGGGTGTTCCACACGGGCATGTCACACGCCCGTGTTGTTTTGGCAGGCTCAC
1 CCACGGGTCTTCCACACGGGCATGTCACACGCCCGTGTTGTTCTGGCAGGCTCAC
* * **
31837759 CCACGGTTCTTCCACACGGGCGTGTTGCACGCCCGTGTTGTTCTGGCAGGCTC
1 CCACGGGTCTTCCACACGGGCATGTCACACGCCCGTGTTGTTCTGGCAGGCTC
31837812 GACCATGGCC
Statistics
Matches: 47, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
55 47 1.00
ACGTcount: A:0.12, C:0.33, G:0.30, T:0.25
Consensus pattern (55 bp):
CCACGGGTCTTCCACACGGGCATGTCACACGCCCGTGTTGTTCTGGCAGGCTCAC
Found at i:31844956 original size:6 final size:6
Alignment explanation
Indices: 31844945--31844977 Score: 57
Period size: 6 Copynumber: 5.5 Consensus size: 6
31844935 TCCTCCTATC
*
31844945 TTTTTA TTTTTA TTTTTA TTTTTA TTTTCA TTT
1 TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTT
31844978 CAATTTTATT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 26 1.00
ACGTcount: A:0.15, C:0.03, G:0.00, T:0.82
Consensus pattern (6 bp):
TTTTTA
Found at i:31844983 original size:18 final size:18
Alignment explanation
Indices: 31844945--31844984 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
31844935 TCCTCCTATC
* **
31844945 TTTTTATTTTTATTTTTA
1 TTTTTATTTTCATTTCAA
31844963 TTTTTATTTTCATTTCAA
1 TTTTTATTTTCATTTCAA
31844981 TTTT
1 TTTT
31844985 ATTATTTTCT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.17, C:0.05, G:0.00, T:0.78
Consensus pattern (18 bp):
TTTTTATTTTCATTTCAA
Found at i:31847620 original size:24 final size:24
Alignment explanation
Indices: 31847588--31847638 Score: 93
Period size: 24 Copynumber: 2.1 Consensus size: 24
31847578 ATTAAGCAGA
*
31847588 GTTGATCGAACGCCTAGAAATAGG
1 GTTGATCGAACACCTAGAAATAGG
31847612 GTTGATCGAACACCTAGAAATAGG
1 GTTGATCGAACACCTAGAAATAGG
31847636 GTT
1 GTT
31847639 ACGAGATTTT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.33, C:0.16, G:0.27, T:0.24
Consensus pattern (24 bp):
GTTGATCGAACACCTAGAAATAGG
Found at i:31854263 original size:45 final size:45
Alignment explanation
Indices: 31854199--31854289 Score: 173
Period size: 45 Copynumber: 2.0 Consensus size: 45
31854189 ATCCGCTACC
*
31854199 TCCTGCGATTGCTGTAAATTAGAATCCTGCTCCACGCACTATGTA
1 TCCTGCGATTGCTGTAAATTAGAATCCTACTCCACGCACTATGTA
31854244 TCCTGCGATTGCTGTAAATTAGAATCCTACTCCACGCACTATGTA
1 TCCTGCGATTGCTGTAAATTAGAATCCTACTCCACGCACTATGTA
31854289 T
1 T
31854290 GGTTATGCTA
Statistics
Matches: 45, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
45 45 1.00
ACGTcount: A:0.25, C:0.26, G:0.16, T:0.32
Consensus pattern (45 bp):
TCCTGCGATTGCTGTAAATTAGAATCCTACTCCACGCACTATGTA
Found at i:31858898 original size:22 final size:23
Alignment explanation
Indices: 31858876--31858927 Score: 63
Period size: 23 Copynumber: 2.3 Consensus size: 23
31858866 ATGTTTTTAC
31858876 TTTTATTCTACTTTAAGACTACT
1 TTTTATTCTACTTTAAGACTACT
* *
31858899 TTTTATTTTTCTTTAAG-CTTA-T
1 TTTTATTCTACTTTAAGAC-TACT
31858921 TTTTATT
1 TTTTATT
31858928 AGGTTTTATA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
22 9 0.35
23 17 0.65
ACGTcount: A:0.21, C:0.12, G:0.04, T:0.63
Consensus pattern (23 bp):
TTTTATTCTACTTTAAGACTACT
Found at i:31866639 original size:22 final size:22
Alignment explanation
Indices: 31866614--31866659 Score: 83
Period size: 22 Copynumber: 2.1 Consensus size: 22
31866604 ATAATAAAAG
31866614 TGAGCATGAAAAGATGAATAGA
1 TGAGCATGAAAAGATGAATAGA
*
31866636 TGAGCATGAAAGGATGAATAGA
1 TGAGCATGAAAAGATGAATAGA
31866658 TG
1 TG
31866660 CTCAAAAGGT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.46, C:0.04, G:0.30, T:0.20
Consensus pattern (22 bp):
TGAGCATGAAAAGATGAATAGA
Found at i:31868272 original size:6 final size:6
Alignment explanation
Indices: 31868261--31868288 Score: 56
Period size: 6 Copynumber: 4.7 Consensus size: 6
31868251 GAAGTGTGAG
31868261 AAAATA AAAATA AAAATA AAAATA AAAA
1 AAAATA AAAATA AAAATA AAAATA AAAA
31868289 AATCAAAATA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.86, C:0.00, G:0.00, T:0.14
Consensus pattern (6 bp):
AAAATA
Found at i:31880798 original size:27 final size:27
Alignment explanation
Indices: 31880750--31880801 Score: 68
Period size: 27 Copynumber: 1.9 Consensus size: 27
31880740 GCGAAGCTGC
*
31880750 CAGATATTGTGACAAAGTCACCAGATA
1 CAGATATTGTGACAAAGCCACCAGATA
* * *
31880777 CAGATATTGTGGCTAGGCCACCAGA
1 CAGATATTGTGACAAAGCCACCAGA
31880802 ACAAAAATAT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 21 1.00
ACGTcount: A:0.35, C:0.21, G:0.23, T:0.21
Consensus pattern (27 bp):
CAGATATTGTGACAAAGCCACCAGATA
Found at i:31881570 original size:27 final size:27
Alignment explanation
Indices: 31881540--31881735 Score: 180
Period size: 27 Copynumber: 7.3 Consensus size: 27
31881530 AGGAGAAAAT
* * *
31881540 GGTAATTTTACCCCACAAAGCTATCTC
1 GGTAATTTTACCCTACAAGGCTATTTC
*
31881567 GGTAATTCTACCCTAC-AGGCGTATTTC
1 GGTAATTTTACCCTACAAGGC-TATTTC
*
31881594 GGT-ATTTCTACCCTACAAGGGTATTTC
1 GGTAATTT-TACCCTACAAGGCTATTTC
* * * *
31881621 GGTAATTCTATCCTACAGGGGTATTTC
1 GGTAATTTTACCCTACAAGGCTATTTC
* * *
31881648 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTTTACCCTACAAGGCTATTTC
** * *
31881675 AATAATTTTAACCTACAAGGTTATTTC
1 GGTAATTTTACCCTACAAGGCTATTTC
* * * *
31881702 GGTAATTCTACCTTACAGGGGTATTTC
1 GGTAATTTTACCCTACAAGGCTATTTC
31881729 GGTAATT
1 GGTAATT
31881736 CTACAACTTA
Statistics
Matches: 142, Mismatches: 23, Indels: 8
0.82 0.13 0.05
Matches are distributed among these distances:
26 6 0.04
27 130 0.92
28 6 0.04
ACGTcount: A:0.26, C:0.21, G:0.18, T:0.36
Consensus pattern (27 bp):
GGTAATTTTACCCTACAAGGCTATTTC
Found at i:31881736 original size:27 final size:27
Alignment explanation
Indices: 31881565--31881739 Score: 251
Period size: 27 Copynumber: 6.5 Consensus size: 27
31881555 CAAAGCTATC
*
31881565 TCGGTAATTCTACCCTACAGGCGTATT
1 TCGGTAATTCTACCCTACAGGGGTATT
* *
31881592 TCGGTATTTCTACCCTACAAGGGTATT
1 TCGGTAATTCTACCCTACAGGGGTATT
*
31881619 TCGGTAATTCTATCCTACAGGGGTATT
1 TCGGTAATTCTACCCTACAGGGGTATT
31881646 TCGGTAATTCTACCCTACAGGGGTATT
1 TCGGTAATTCTACCCTACAGGGGTATT
** * * * *
31881673 TCAATAATTTTAACCTACAAGGTTATT
1 TCGGTAATTCTACCCTACAGGGGTATT
*
31881700 TCGGTAATTCTACCTTACAGGGGTATT
1 TCGGTAATTCTACCCTACAGGGGTATT
31881727 TCGGTAATTCTAC
1 TCGGTAATTCTAC
31881740 AACTTACCCA
Statistics
Matches: 128, Mismatches: 20, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 128 1.00
ACGTcount: A:0.25, C:0.21, G:0.18, T:0.37
Consensus pattern (27 bp):
TCGGTAATTCTACCCTACAGGGGTATT
Found at i:31883281 original size:11 final size:11
Alignment explanation
Indices: 31883262--31883298 Score: 56
Period size: 11 Copynumber: 3.4 Consensus size: 11
31883252 ATTTTGTCCT
*
31883262 TTTTTGGCTCA
1 TTTTTGGCTCC
*
31883273 TTTTCGGCTCC
1 TTTTTGGCTCC
31883284 TTTTTGGCTCC
1 TTTTTGGCTCC
31883295 TTTT
1 TTTT
31883299 GATCTCCTAT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
11 23 1.00
ACGTcount: A:0.03, C:0.24, G:0.16, T:0.57
Consensus pattern (11 bp):
TTTTTGGCTCC
Found at i:31902777 original size:17 final size:17
Alignment explanation
Indices: 31902755--31902789 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
31902745 CAAAATTTGA
*
31902755 TATTTCGTGTTAAACTT
1 TATTTCGTATTAAACTT
31902772 TATTTCGTATTAAACTT
1 TATTTCGTATTAAACTT
31902789 T
1 T
31902790 TGTTTGAATT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.26, C:0.11, G:0.09, T:0.54
Consensus pattern (17 bp):
TATTTCGTATTAAACTT
Found at i:31904295 original size:11 final size:10
Alignment explanation
Indices: 31904275--31904307 Score: 50
Period size: 10 Copynumber: 3.3 Consensus size: 10
31904265 ACCCACAATA
31904275 TTTTTTTATT
1 TTTTTTTATT
31904285 TTTTTTGTA-T
1 TTTTTT-TATT
31904295 TTTTTTTATT
1 TTTTTTTATT
31904305 TTT
1 TTT
31904308 GCACTTCTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
9 2 0.10
10 17 0.81
11 2 0.10
ACGTcount: A:0.09, C:0.00, G:0.03, T:0.88
Consensus pattern (10 bp):
TTTTTTTATT
Found at i:31909696 original size:22 final size:21
Alignment explanation
Indices: 31909661--31909790 Score: 68
Period size: 19 Copynumber: 6.7 Consensus size: 21
31909651 AAAAGGTATC
* *
31909661 TACAAATTAAATCTCTAAGAT
1 TACAAATCATATCTCTAAGAT
31909682 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATC-TCTAAGAT
* *
31909705 TGCATATCATA--TCTAAGAT
1 TACAAATCATATCTCTAAGAT
*
31909724 TGC-AATCATA--TCTAAGAT
1 TACAAATCATATCTCTAAGAT
**
31909742 T--GTATCATA--TCTAAGAT
1 TACAAATCATATCTCTAAGAT
* *
31909759 TGCATATCATA--TCTAAGAT
1 TACAAATCATATCTCTAAGAT
*
31909778 TGC-AATCATATCT
1 TACAAATCATATCT
31909791 AAGATTGTAT
Statistics
Matches: 94, Mismatches: 8, Indels: 15
0.80 0.07 0.13
Matches are distributed among these distances:
17 15 0.16
18 21 0.22
19 29 0.31
20 1 0.01
21 3 0.03
22 15 0.16
23 10 0.11
ACGTcount: A:0.39, C:0.16, G:0.08, T:0.36
Consensus pattern (21 bp):
TACAAATCATATCTCTAAGAT
Found at i:31909704 original size:23 final size:22
Alignment explanation
Indices: 31909661--31909718 Score: 64
Period size: 22 Copynumber: 2.6 Consensus size: 22
31909651 AAAAGGTATC
* *
31909661 TACAAATTAAATC-TCTAAGAT
1 TACAAATCATATCTTCTAAGAT
31909682 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATCTTCTAAGAT
* *
31909705 TGCATATCATATCT
1 TACAAATCATATCT
31909719 AAGATTGCAA
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
21 3 0.10
22 18 0.58
23 10 0.32
ACGTcount: A:0.41, C:0.17, G:0.05, T:0.36
Consensus pattern (22 bp):
TACAAATCATATCTTCTAAGAT
Found at i:31909721 original size:19 final size:19
Alignment explanation
Indices: 31909697--31909841 Score: 239
Period size: 19 Copynumber: 7.9 Consensus size: 19
31909687 AATCATATCT
31909697 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
31909716 TCTAAGATTGCA-ATCATA
1 TCTAAGATTGCATATCATA
31909734 TCTAAGATTG--TATCATA
1 TCTAAGATTGCATATCATA
31909751 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
31909770 TCTAAGATTGCA-ATCATA
1 TCTAAGATTGCATATCATA
31909788 TCTAAGATTG--TATCATA
1 TCTAAGATTGCATATCATA
*
31909805 TATAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
31909824 TCTAAGATTGCATATCAT
1 TCTAAGATTGCATATCAT
31909842 TGAAGATTAT
Statistics
Matches: 118, Mismatches: 2, Indels: 12
0.89 0.02 0.09
Matches are distributed among these distances:
17 31 0.26
18 32 0.27
19 55 0.47
ACGTcount: A:0.37, C:0.14, G:0.11, T:0.37
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:31909765 original size:54 final size:54
Alignment explanation
Indices: 31909697--31909841 Score: 272
Period size: 54 Copynumber: 2.7 Consensus size: 54
31909687 AATCATATCT
31909697 TCTAAGATTGCATATCATATCTAAGATTGCAATCATATCTAAGATTGTATCATA
1 TCTAAGATTGCATATCATATCTAAGATTGCAATCATATCTAAGATTGTATCATA
31909751 TCTAAGATTGCATATCATATCTAAGATTGCAATCATATCTAAGATTGTATCATA
1 TCTAAGATTGCATATCATATCTAAGATTGCAATCATATCTAAGATTGTATCATA
*
31909805 TATAAGATTGCATATCATATCTAAGATTGCATATCAT
1 TCTAAGATTGCATATCATATCTAAGATTGCA-ATCAT
31909842 TGAAGATTAT
Statistics
Matches: 89, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
54 84 0.94
55 5 0.06
ACGTcount: A:0.37, C:0.14, G:0.11, T:0.37
Consensus pattern (54 bp):
TCTAAGATTGCATATCATATCTAAGATTGCAATCATATCTAAGATTGTATCATA
Found at i:31909778 original size:73 final size:71
Alignment explanation
Indices: 31909690--31909842 Score: 238
Period size: 73 Copynumber: 2.1 Consensus size: 71
31909680 ATTACAAAAT
*
31909690 CATATC-TTCTAAGATTGCATATCATATCTAAGATTGCAATCATATCTAAGATTG-TATCATATC
1 CATATCATTCTAAGATTGCA-ATCATATCTAAGATTG-AATCATATATAAGATTGATATCATATC
31909753 TAAGATTG
64 TAAGATTG
*
31909761 CATATCATATCTAAGATTGCAATCATATCTAAGATTGTATCATATATAAGATTGCATATCATATC
1 CATATCAT-TCTAAGATTGCAATCATATCTAAGATTGAATCATATATAAGATTG-ATATCATATC
31909826 TAAGATTG
64 TAAGATTG
31909834 CATATCATT
1 CATATCATT
31909843 GAAGATTATA
Statistics
Matches: 76, Mismatches: 2, Indels: 7
0.89 0.02 0.08
Matches are distributed among these distances:
71 21 0.28
72 18 0.24
73 37 0.49
ACGTcount: A:0.37, C:0.15, G:0.10, T:0.38
Consensus pattern (71 bp):
CATATCATTCTAAGATTGCAATCATATCTAAGATTGAATCATATATAAGATTGATATCATATCTA
AGATTG
Found at i:31910241 original size:45 final size:45
Alignment explanation
Indices: 31910173--31910309 Score: 172
Period size: 45 Copynumber: 3.1 Consensus size: 45
31910163 AGAAGGCGAT
* *
31910173 ATCTGCTATCTTTGATCTGCTCCCCGTCTAATACAGAGACACCAA
1 ATCTGCTATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAA
* * *
31910218 ATCTGTTATCTTCGATCTTCTCCCCGTCTAATATAGAGACGCCAA
1 ATCTGCTATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAA
* * *
31910263 ATCTGCT-TCTTCAATCTGC-CCTCTGAC-AATACAGAGACGCCAA
1 ATCTGCTATCTTCGATCTGCTCC-CCGTCTAATACAGAGACGCCAA
31910306 ATCT
1 ATCT
31910310 TCTTAGATCT
Statistics
Matches: 80, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
43 21 0.26
44 13 0.16
45 46 0.57
ACGTcount: A:0.26, C:0.31, G:0.13, T:0.30
Consensus pattern (45 bp):
ATCTGCTATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAA
Found at i:31910558 original size:175 final size:175
Alignment explanation
Indices: 31910338--31910820 Score: 771
Period size: 175 Copynumber: 2.8 Consensus size: 175
31910328 GTAAACACGT
* * * * *
31910338 GAAAGCCAAATCTGCTGTGTCTTCGATTTGCTCCTTGTGAACACAAGGATGCCAAATCATCTTGG
1 GAAAGTCAAATCTGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGAATGCCAAATCATCTTGG
*
31910403 ATCTGCTTCAGTAAAATCATCTGAAGGTTAGATCTGCTATGTATCTGCTCTCCGTCGAAATAGAG
66 ATCTGCTTCAGTAAAATCATCTGAAGGTTAGATCTGCTATGTATCTGCTCTCCGTCGAAATGGAG
31910468 ATGCCAGATCTGTTATCTTGGATCTACTTTGGTGTAAGAACATCC
131 ATGCCAGATCTGTTATCTTGGATCTACTTTGGTGTAAGAACATCC
31910513 GAAAGTCAAATCTGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGAATGCCAAATCATCTTGG
1 GAAAGTCAAATCTGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGAATGCCAAATCATCTTGG
* * * * *
31910578 ATCTGCTTCAATATAAA-CATCTGAAGGCTAGACCTGCTATGTACCTACTCTCCGTCGAAATGGA
66 ATCTGCTTCAGTA-AAATCATCTGAAGGTTAGATCTGCTATGTATCTGCTCTCCGTCGAAATGGA
* * * *
31910642 GATGCTAGATCTGTTATCTTGGATCTGCTTTGGTGTGAGAACATCT
130 GATGCCAGATCTGTTATCTTGGATCTACTTTGGTGTAAGAACATCC
*
31910688 GAAAGTCAAATCTGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGAATGCCAAACCATCTTGG
1 GAAAGTCAAATCTGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGAATGCCAAATCATCTTGG
31910753 ATCTGCTTCAG-----TCATCTGAAGGTTAGATCTGCTATGTATCTGCTCTCCGTCGAAATGGAG
66 ATCTGCTTCAGTAAAATCATCTGAAGGTTAGATCTGCTATGTATCTGCTCTCCGTCGAAATGGAG
31910813 ATGCCAGA
131 ATGCCAGA
31910821 CTTCAATTTG
Statistics
Matches: 284, Mismatches: 22, Indels: 9
0.90 0.07 0.03
Matches are distributed among these distances:
170 51 0.18
175 230 0.81
176 3 0.01
ACGTcount: A:0.27, C:0.21, G:0.20, T:0.32
Consensus pattern (175 bp):
GAAAGTCAAATCTGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGAATGCCAAATCATCTTGG
ATCTGCTTCAGTAAAATCATCTGAAGGTTAGATCTGCTATGTATCTGCTCTCCGTCGAAATGGAG
ATGCCAGATCTGTTATCTTGGATCTACTTTGGTGTAAGAACATCC
Found at i:31910616 original size:87 final size:86
Alignment explanation
Indices: 31910301--31910764 Score: 260
Period size: 87 Copynumber: 5.3 Consensus size: 86
31910291 ATACAGAGAC
* * * * *
31910301 GCCAAATCTTCTTAGATCTGCTTCAGTGTAAACA-CGTGAAAGCCAAATCTGCTGTGTCTTCGAT
1 GCCAAATCATCTTGGATCTGCTTCAGTATAAACATC-TGAAAGCTAAATCTGCTATGTCTTCGAT
* *
31910365 TTGCTCCTTGTGAACACAAGGAT
65 TTGTTCCTTGTAAACACAA-GAT
* * *
31910388 GCCAAATCATCTTGGATCTGCTTCAGTA-AAATCATCTGAAGGTTAGATCTGCTATG---T--AT
1 GCCAAATCATCTTGGATCTGCTTCAGTATAAA-CATCTGAAAGCTAAATCTGCTATGTCTTCGAT
* * * *
31910447 CTGCTCTCCGTCG-AAATA-GAGAT
65 TTG-T-TCC-TTGTAAACACAAGAT
* * ** * *
31910470 GCCAGATCTGTTATCTTGGATCTACTTTGGTGTAAGAACATCCGAAAG-TCAAATCTGCTATGTC
1 GCCAAATC----ATCTTGGATCTGCTTCAGTAT-A-AACATCTGAAAGCT-AAATCTGCTATGTC
31910534 TTCGATTTGTTCCTTGTAAACACAAGAAT
59 TTCGATTTGTTCCTTGTAAACACAAG-AT
* * * * *
31910563 GCCAAATCATCTTGGATCTGCTTCAATATAAACATCTGAAGGCTAGACCTGCTATGTAC--CTA-
1 GCCAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAAGCTAAATCTGCTATGT-CTTCGAT
* * * ***
31910625 CT-CTCCGTCG-AAA-TGGAGAT
65 TTGTTCC-TTGTAAACACAAGAT
* * ** *
31910645 GCTAGATCTGTTATCTTGGATCTGCTTTGGTGTGAGAACATCTGAAAG-TCAAATCTGCTATGTC
1 GCCAAATC----ATCTTGGATCTGCTTCAGTAT-A-AACATCTGAAAGCT-AAATCTGCTATGTC
31910709 TTCGATTTGTTCCTTGTAAACACAAGAAT
59 TTCGATTTGTTCCTTGTAAACACAAG-AT
*
31910738 GCCAAACCATCTTGGATCTGCTTCAGT
1 GCCAAATCATCTTGGATCTGCTTCAGT
31910765 CATCTGAAGG
Statistics
Matches: 275, Mismatches: 64, Indels: 74
0.67 0.15 0.18
Matches are distributed among these distances:
82 22 0.08
83 3 0.01
84 13 0.05
85 5 0.02
86 38 0.14
87 67 0.24
88 46 0.17
89 37 0.13
90 5 0.02
91 14 0.05
92 5 0.02
93 20 0.07
ACGTcount: A:0.27, C:0.21, G:0.19, T:0.32
Consensus pattern (86 bp):
GCCAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAAGCTAAATCTGCTATGTCTTCGATT
TGTTCCTTGTAAACACAAGAT
Found at i:31910703 original size:88 final size:87
Alignment explanation
Indices: 31910420--31910707 Score: 223
Period size: 88 Copynumber: 3.3 Consensus size: 87
31910410 TCAGTAAAAT
* * * * *
31910420 CATCTGAAGGTTAGATCTGCTATGTATCTGCTCTCCGTCGAAATAGAGATGCCAGATCTGTTATC
1 CATCTGAAAGTCAAATCTGCTATGTACCTACTCTCCGTCGAAATAGAGATGCCAGATCTGTTATC
*
31910485 TTGGATCTACTTTGGTGTAAGAA
66 TTGGATCTGCTTTGGTGT-AGAA
* * * * * * * *
31910508 CATCCGAAAGTCAAATCTGCTATGT-CTTCGATTTGTTCC-TTGTAAACACAAGAATGCCAAATC
1 CATCTGAAAGTCAAATCTGCTATGTAC--CTA-CT-CTCCGTCG-AAATA-GAG-ATGCCAGATC
*** *
31910571 ----ATCTTGGATCTGCTTCAATATA-AA
59 TGTTATCTTGGATCTGCTTTGGTGTAGAA
* * * * *
31910595 CATCTG-AAGGCTAGACCTGCTATGTACCTACTCTCCGTCGAAATGGAGATGCTAGATCTGTTAT
1 CATCTGAAAGTC-AAATCTGCTATGTACCTACTCTCCGTCGAAATAGAGATGCCAGATCTGTTAT
31910659 CTTGGATCTGCTTTGGTGTGAGAA
65 CTTGGATCTGCTTTGGTGT-AGAA
31910683 CATCTGAAAGTCAAATCTGCTATGT
1 CATCTGAAAGTCAAATCTGCTATGT
31910708 CTTCGATTTG
Statistics
Matches: 145, Mismatches: 38, Indels: 34
0.67 0.18 0.16
Matches are distributed among these distances:
82 8 0.06
83 2 0.01
84 6 0.04
85 3 0.02
86 23 0.16
87 19 0.13
88 42 0.29
89 21 0.14
90 3 0.02
91 7 0.05
92 2 0.01
93 9 0.06
ACGTcount: A:0.27, C:0.20, G:0.20, T:0.33
Consensus pattern (87 bp):
CATCTGAAAGTCAAATCTGCTATGTACCTACTCTCCGTCGAAATAGAGATGCCAGATCTGTTATC
TTGGATCTGCTTTGGTGTAGAA
Found at i:31911948 original size:19 final size:19
Alignment explanation
Indices: 31911921--31911963 Score: 61
Period size: 19 Copynumber: 2.3 Consensus size: 19
31911911 TTCTTTTTTC
*
31911921 TTTTT-TTTTATTTTTATT
1 TTTTTCTTTTAATTTTATT
*
31911939 TTTTTCTTTTAATTTTCTT
1 TTTTTCTTTTAATTTTATT
31911958 TTTTTC
1 TTTTTC
31911964 CCTTTTTTTT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
18 5 0.23
19 17 0.77
ACGTcount: A:0.09, C:0.07, G:0.00, T:0.84
Consensus pattern (19 bp):
TTTTTCTTTTAATTTTATT
Found at i:31911959 original size:24 final size:24
Alignment explanation
Indices: 31911914--31911959 Score: 58
Period size: 24 Copynumber: 1.9 Consensus size: 24
31911904 TCCATTTTTC
* *
31911914 TTTTTTCTTTTTTTTTATTTTTAT
1 TTTTTTCTTTTATTTTACTTTTAT
31911938 TTTTTTCTTTTAATTTT-CTTTT
1 TTTTTTCTTTT-ATTTTACTTTT
31911960 TTTCCCTTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
24 15 0.79
25 4 0.21
ACGTcount: A:0.09, C:0.07, G:0.00, T:0.85
Consensus pattern (24 bp):
TTTTTTCTTTTATTTTACTTTTAT
Found at i:31911973 original size:19 final size:17
Alignment explanation
Indices: 31911914--31911973 Score: 59
Period size: 19 Copynumber: 3.4 Consensus size: 17
31911904 TCCATTTTTC
31911914 TTTTTTCTTTTTTT-TT
1 TTTTTTCTTTTTTTCTT
* *
31911930 ATTTTTATTTTTTTCTT
1 TTTTTTCTTTTTTTCTT
31911947 TTAATTTTCTTTTTTTCCCTT
1 TT--TTTTCTTTTTTT--CTT
31911968 TTTTTT
1 TTTTTT
31911974 GGAAATAGAA
Statistics
Matches: 35, Mismatches: 4, Indels: 7
0.76 0.09 0.15
Matches are distributed among these distances:
16 12 0.34
17 3 0.09
19 15 0.43
21 5 0.14
ACGTcount: A:0.07, C:0.10, G:0.00, T:0.83
Consensus pattern (17 bp):
TTTTTTCTTTTTTTCTT
Found at i:31918815 original size:21 final size:23
Alignment explanation
Indices: 31918789--31918834 Score: 60
Period size: 23 Copynumber: 2.1 Consensus size: 23
31918779 TAAAAGGTAT
*
31918789 TTAC-AAATTAAATC-TCTAAGA
1 TTACAAAATCAAATCTTCTAAGA
*
31918810 TTACAAAATCATATCTTCTAAGA
1 TTACAAAATCAAATCTTCTAAGA
31918833 TT
1 TT
31918835 GCATCTCATA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
21 4 0.19
22 8 0.38
23 9 0.43
ACGTcount: A:0.43, C:0.15, G:0.04, T:0.37
Consensus pattern (23 bp):
TTACAAAATCAAATCTTCTAAGA
Found at i:31918850 original size:19 final size:19
Alignment explanation
Indices: 31918826--31918970 Score: 212
Period size: 19 Copynumber: 7.9 Consensus size: 19
31918816 AATCATATCT
*
31918826 TCTAAGATTGCATCTCATA
1 TCTAAGATTGCATATCATA
31918845 TCTAAGATTGCA-ATCATA
1 TCTAAGATTGCATATCATA
31918863 TCTAAGATTG--TATCATA
1 TCTAAGATTGCATATCATA
31918880 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
31918899 TCTAAGATTGCA-ATCATA
1 TCTAAGATTGCATATCATA
*
31918917 TCTAAGATTG--TCTCATA
1 TCTAAGATTGCATATCATA
*
31918934 TATAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
*
31918953 TCTAGGATTGCATATCAT
1 TCTAAGATTGCATATCAT
31918971 TGAAGATTAT
Statistics
Matches: 114, Mismatches: 6, Indels: 12
0.86 0.05 0.09
Matches are distributed among these distances:
17 30 0.26
18 31 0.27
19 53 0.46
ACGTcount: A:0.35, C:0.16, G:0.12, T:0.37
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:31918888 original size:54 final size:54
Alignment explanation
Indices: 31918826--31918970 Score: 245
Period size: 54 Copynumber: 2.7 Consensus size: 54
31918816 AATCATATCT
*
31918826 TCTAAGATTGCATCTCATATCTAAGATTGCAATCATATCTAAGATTGTATCATA
1 TCTAAGATTGCATATCATATCTAAGATTGCAATCATATCTAAGATTGTATCATA
*
31918880 TCTAAGATTGCATATCATATCTAAGATTGCAATCATATCTAAGATTGTCTCATA
1 TCTAAGATTGCATATCATATCTAAGATTGCAATCATATCTAAGATTGTATCATA
* *
31918934 TATAAGATTGCATATCATATCTAGGATTGCATATCAT
1 TCTAAGATTGCATATCATATCTAAGATTGCA-ATCAT
31918971 TGAAGATTAT
Statistics
Matches: 86, Mismatches: 4, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
54 81 0.94
55 5 0.06
ACGTcount: A:0.35, C:0.16, G:0.12, T:0.37
Consensus pattern (54 bp):
TCTAAGATTGCATATCATATCTAAGATTGCAATCATATCTAAGATTGTATCATA
Found at i:31918895 original size:14 final size:15
Alignment explanation
Indices: 31918840--31918949 Score: 78
Period size: 18 Copynumber: 6.5 Consensus size: 15
31918830 AGATTGCATC
31918840 TCATATCTAAGATTG
1 TCATATCTAAGATTG
31918855 CAATCATATCTAAGATTG
1 ---TCATATCTAAGATTG
31918873 TATCATATCTAAGATTG
1 --TCATATCTAAGATTG
31918890 CATATCATATCTAAGATTG
1 ----TCATATCTAAGATTG
31918909 CAATCATATCTAAGATTG
1 ---TCATATCTAAGATTG
*
31918927 TCTCATATATAAGATTG
1 --TCATATCTAAGATTG
31918944 -CATATC
1 TCATATC
31918950 ATATCTAGGA
Statistics
Matches: 83, Mismatches: 7, Indels: 8
0.85 0.07 0.08
Matches are distributed among these distances:
14 5 0.06
17 30 0.36
18 31 0.37
19 17 0.20
ACGTcount: A:0.36, C:0.15, G:0.11, T:0.37
Consensus pattern (15 bp):
TCATATCTAAGATTG
Found at i:31918907 original size:73 final size:71
Alignment explanation
Indices: 31918819--31918971 Score: 213
Period size: 73 Copynumber: 2.1 Consensus size: 71
31918809 ATTACAAAAT
* *
31918819 CATATC-TTCTAAGATTGCATCTCATATCTAAGATTG-CAATCATATCTAAGATTG-TATCATAT
1 CATATCATTCTAAGATTGCA-ATCATATCTAAGATTGTC--TCATATATAAGATTGATATCATAT
31918881 CTAAGATTG
63 CTAAGATTG
31918890 CATATCATATCTAAGATTGCAATCATATCTAAGATTGTCTCATATATAAGATTGCATATCATATC
1 CATATCAT-TCTAAGATTGCAATCATATCTAAGATTGTCTCATATATAAGATTG-ATATCATATC
*
31918955 TAGGATTG
64 TAAGATTG
31918963 CATATCATT
1 CATATCATT
31918972 GAAGATTATA
Statistics
Matches: 74, Mismatches: 3, Indels: 9
0.86 0.03 0.10
Matches are distributed among these distances:
71 20 0.27
72 17 0.23
73 37 0.50
ACGTcount: A:0.35, C:0.16, G:0.11, T:0.38
Consensus pattern (71 bp):
CATATCATTCTAAGATTGCAATCATATCTAAGATTGTCTCATATATAAGATTGATATCATATCTA
AGATTG
Found at i:31921611 original size:259 final size:258
Alignment explanation
Indices: 31921142--31921626 Score: 785
Period size: 259 Copynumber: 1.9 Consensus size: 258
31921132 AGATTACTTT
*
31921142 CTCGTAATCCACCTTATTCTTGTTACCCCACACGTAGTGTGGCATATCCGTGAGTGGTTCACTTT
1 CTCGTAATCCACCTTATTCTCGTTACCCCACACGTAGTGTGGCATATCCGTGAGTGGTTCACTTT
* * * *
31921207 GCCCTTCAGTACCTAGTAGTCTACCATTGGAGTCAATAATTTGTTTTCACTCCTAGGTTGGTCCC
66 GCCATTCAGTACCTAGTAGCCTACCATTGGAGTCAATAATTTGTTTTCACTCCTAGATTAGTCCC
31921272 TACAAAACTAGCTATTTGGATAGTACATTCCCAGTGGTTGTCCACTTTAAGGAAATGGTCTTGAT
131 TACAAAACTAGCTATTTGGATAGTACATTCCCAGTGGTTGTCCACTTTAAGGAAATGGTCTTGAT
*
31921337 AGATAGATTTGTCGTCCGATATATCC-TTCTTTGTCAATGGATTCTCTTTATCACCTCTTTTC
196 AGATAGATCTGTCGTCCGATATATCCATTCTTTGTCAATGGATTCTCTTTATCACCTCTTTTC
*
31921399 CTCGTGATCCACCTTATTCTCGTTACCCCACACGTAGTGTGGCATATCCGTGAGTGGTGGTTCAC
1 CTCGTAATCCACCTTATTCTCGTTACCCCACACGTAGTGTGGCATATCCGTGA---GTGGTTCAC
*** * *
31921464 TTTTTGATTTAGTACCTAGTAGCCTACCATTGGAGTGAATAATTT-TTTTCACTCCTAGATTAGT
63 TTTGCCATTCAGTACCTAGTAGCCTACCATTGGAGTCAATAATTTGTTTTCACTCCTAGATTAGT
* *
31921528 CCCTACAAAGCTAGCTATTTGGATAGTACATTCCCAGTGGTTGTCCACTTTAAGGGAATGGTCTT
128 CCCTACAAAACTAGCTATTTGGATAGTACATTCCCAGTGGTTGTCCACTTTAAGGAAATGGTCTT
* *
31921593 GATAGGTAGATCTGTCGTCTGATATATCCATTCT
193 GATAGATAGATCTGTCGTCCGATATATCCATTCT
31921627 CTAGCACCTA
Statistics
Matches: 208, Mismatches: 16, Indels: 5
0.91 0.07 0.02
Matches are distributed among these distances:
257 51 0.25
259 106 0.51
260 51 0.25
ACGTcount: A:0.22, C:0.22, G:0.19, T:0.37
Consensus pattern (258 bp):
CTCGTAATCCACCTTATTCTCGTTACCCCACACGTAGTGTGGCATATCCGTGAGTGGTTCACTTT
GCCATTCAGTACCTAGTAGCCTACCATTGGAGTCAATAATTTGTTTTCACTCCTAGATTAGTCCC
TACAAAACTAGCTATTTGGATAGTACATTCCCAGTGGTTGTCCACTTTAAGGAAATGGTCTTGAT
AGATAGATCTGTCGTCCGATATATCCATTCTTTGTCAATGGATTCTCTTTATCACCTCTTTTC
Found at i:31922159 original size:27 final size:27
Alignment explanation
Indices: 31922136--31922243 Score: 162
Period size: 27 Copynumber: 4.0 Consensus size: 27
31922126 GCGGACTACT
31922136 CCGTGTTTAATGTCCCATCAGACTATC
1 CCGTGTTTAATGTCCCATCAGACTATC
***
31922163 CCGTGTTTAGCATCCCATCAGACTATC
1 CCGTGTTTAATGTCCCATCAGACTATC
*
31922190 CTGTGTTTAATGTCCCATCAGACTATC
1 CCGTGTTTAATGTCCCATCAGACTATC
* *
31922217 CCATGTTTAATGTCCCATCACACTATC
1 CCGTGTTTAATGTCCCATCAGACTATC
31922244 TTCGATGTCA
Statistics
Matches: 71, Mismatches: 10, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 71 1.00
ACGTcount: A:0.23, C:0.31, G:0.13, T:0.33
Consensus pattern (27 bp):
CCGTGTTTAATGTCCCATCAGACTATC
Found at i:31932613 original size:35 final size:37
Alignment explanation
Indices: 31932542--31932639 Score: 150
Period size: 35 Copynumber: 2.7 Consensus size: 37
31932532 ATTATCTTTA
31932542 ATGATATGCAATCTTAGATATGATATGCAATCTTAGAT
1 ATGATA-GCAATCTTAGATATGATATGCAATCTTAGAT
31932580 ATGATA-CAATCTTAGATATGAT-TGCAATCTTAGAT
1 ATGATAGCAATCTTAGATATGATATGCAATCTTAGAT
31932615 ATGATATGCAATCTTAGA-A-GATATG
1 ATGATA-GCAATCTTAGATATGATATG
31932640 ATTTTGTAAT
Statistics
Matches: 57, Mismatches: 0, Indels: 8
0.88 0.00 0.12
Matches are distributed among these distances:
35 22 0.39
36 19 0.33
37 10 0.18
38 6 0.11
ACGTcount: A:0.38, C:0.10, G:0.16, T:0.36
Consensus pattern (37 bp):
ATGATAGCAATCTTAGATATGATATGCAATCTTAGAT
Found at i:31932639 original size:17 final size:19
Alignment explanation
Indices: 31932542--31932632 Score: 161
Period size: 19 Copynumber: 4.9 Consensus size: 19
31932532 ATTATCTTTA
31932542 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
31932561 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
31932580 ATGATA--CAATCTTAGAT
1 ATGATATGCAATCTTAGAT
31932597 ATGAT-TGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
31932615 ATGATATGCAATCTTAGA
1 ATGATATGCAATCTTAGA
31932633 AGATATGATT
Statistics
Matches: 69, Mismatches: 0, Indels: 6
0.92 0.00 0.08
Matches are distributed among these distances:
17 16 0.23
18 16 0.23
19 37 0.54
ACGTcount: A:0.37, C:0.11, G:0.15, T:0.36
Consensus pattern (19 bp):
ATGATATGCAATCTTAGAT
Found at i:31932658 original size:22 final size:22
Alignment explanation
Indices: 31932542--31932655 Score: 96
Period size: 19 Copynumber: 5.8 Consensus size: 22
31932532 ATTATCTTTA
31932542 ATGATATGCAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
31932561 ATGATATGCAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
31932580 ATGATA--CAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
31932597 ATGAT-TGCAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
31932615 ATGATATGCAATCTTAGAAGAT
1 ATGATATGCAATCTTAGAAGAT
* *
31932637 ATGATTTTGTAATCTTAGA
1 ATGA-TATGCAATCTTAGA
31932656 GATTTAATTT
Statistics
Matches: 86, Mismatches: 2, Indels: 10
0.88 0.02 0.10
Matches are distributed among these distances:
17 16 0.19
18 16 0.19
19 34 0.40
22 8 0.09
23 12 0.14
ACGTcount: A:0.37, C:0.10, G:0.16, T:0.38
Consensus pattern (22 bp):
ATGATATGCAATCTTAGAAGAT
Found at i:31932942 original size:17 final size:17
Alignment explanation
Indices: 31932920--31932954 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
31932910 CATGTTTCCC
31932920 TTTTTT-ATATATTTTAA
1 TTTTTTAATA-ATTTTAA
31932937 TTTTTTAATAATTTTAA
1 TTTTTTAATAATTTTAA
31932954 T
1 T
31932955 ATCATATCAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 14 0.82
18 3 0.18
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (17 bp):
TTTTTTAATAATTTTAA
Found at i:31942123 original size:78 final size:78
Alignment explanation
Indices: 31942011--31942305 Score: 430
Period size: 78 Copynumber: 3.8 Consensus size: 78
31942001 CGAAGAAATA
** * * * * *
31942011 GATTTGGCATCTCCATATTCGACAGAGAGTAGATCGAAGATATAGCAGATCTGACCTTCATTGAA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAGCAGATCTGACCTTCATTGAA
*
31942076 GTAGATCCAAGAT
66 GCAGATCCAAGAT
* * *
31942089 GATTTGGCATCTCTGTTTTAGACGGGGAGCAGATCGAAGACACAGTAGATCTGACCTTCATTGAA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAGCAGATCTGACCTTCATTGAA
31942154 GCAGATCCAAGAT
66 GCAGATCCAAGAT
* * * *
31942167 GATTTGGCATCTCTGTATTAGACGGGGAGCAAATCGAAGACATAACAGAT-TGGACCTTTATTAA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAGCAGATCT-GACCTTCATTGA
31942231 AGCAGATCCAAGAT
65 AGCAGATCCAAGAT
*
31942245 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCAAAGACATAGCAGATCTGACCTTCAT
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAGCAGATCTGACCTTCAT
31942306 GTGTTTACAT
Statistics
Matches: 193, Mismatches: 22, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
77 1 0.01
78 191 0.99
79 1 0.01
ACGTcount: A:0.32, C:0.18, G:0.24, T:0.26
Consensus pattern (78 bp):
GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAGCAGATCTGACCTTCATTGAA
GCAGATCCAAGAT
Found at i:31942485 original size:88 final size:89
Alignment explanation
Indices: 31942335--31942503 Score: 279
Period size: 88 Copynumber: 1.9 Consensus size: 89
31942325 TCCAAGATGA
*
31942335 CAGATTTGGCATCTCTATATTAGACGAGGAGCAAATCGGAGATAACAGATTTGACATCTCTGTAT
1 CAGATTTGGCATCTCTATATTAGACGAGGAGCAAATCGAAGATAACAGATTTGACATCTCTGTAT
31942400 TAGACGGGGAGCAGATTGAAGAAG
66 TAGACGGGGAGCAGATTGAAGAAG
* * *
31942424 CAGATTTGGCATCTCTGTATTAGACG-GGAGCAGATCTAAGATAACAGATTTCG-CATCTCTGTA
1 CAGATTTGGCATCTCTATATTAGACGAGGAGCAAATCGAAGATAACAGATTT-GACATCTCTGTA
31942487 TTAGACGGGGAGCAGAT
65 TTAGACGGGGAGCAGAT
31942504 CAAAGATGGC
Statistics
Matches: 75, Mismatches: 4, Indels: 3
0.91 0.05 0.04
Matches are distributed among these distances:
88 49 0.65
89 26 0.35
ACGTcount: A:0.31, C:0.16, G:0.27, T:0.26
Consensus pattern (89 bp):
CAGATTTGGCATCTCTATATTAGACGAGGAGCAAATCGAAGATAACAGATTTGACATCTCTGTAT
TAGACGGGGAGCAGATTGAAGAAG
Found at i:31942517 original size:45 final size:45
Alignment explanation
Indices: 31942245--31942510 Score: 272
Period size: 45 Copynumber: 5.9 Consensus size: 45
31942235 GATCCAAGAT
*
31942245 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCAAAGACATAGCA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCAAAG--ATAACA
* * * * * * * *
31942292 GATCTGACCT-TCATGTGTTTACATC--GAAGCAGATCCAAGATGACA
1 GATTTGGCATCTC-TGT-ATTAGA-CGGGGAGCAGATCAAAGATAACA
* * * **
31942337 GATTTGGCATCTCTATATTAGACGAGGAGCAAATCGGAGATAACA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCAAAGATAACA
* ** *
31942382 GATTTGACATCTCTGTATTAGACGGGGAGCAGATTGAAGA-AGCA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCAAAGATAACA
*
31942426 GATTTGGCATCTCTGTATTAGAC-GGGAGCAGATCTAAGATAACA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCAAAGATAACA
*
31942470 GATTTCGCATCTCTGTATTAGACGGGGAGCAGATCAAAGAT
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCAAAGAT
31942511 GGCAGATATC
Statistics
Matches: 178, Mismatches: 33, Indels: 18
0.78 0.14 0.08
Matches are distributed among these distances:
43 15 0.08
44 54 0.30
45 78 0.44
46 4 0.02
47 22 0.12
48 4 0.02
49 1 0.01
ACGTcount: A:0.32, C:0.17, G:0.26, T:0.26
Consensus pattern (45 bp):
GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCAAAGATAACA
Found at i:31942891 original size:19 final size:19
Alignment explanation
Indices: 31942867--31942922 Score: 112
Period size: 19 Copynumber: 2.9 Consensus size: 19
31942857 ATTATCTTCA
31942867 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
31942886 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
31942905 ATGATATGCAATCTTAGA
1 ATGATATGCAATCTTAGA
31942923 AGATATGATT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 37 1.00
ACGTcount: A:0.38, C:0.11, G:0.16, T:0.36
Consensus pattern (19 bp):
ATGATATGCAATCTTAGAT
Found at i:31942948 original size:22 final size:22
Alignment explanation
Indices: 31942867--31942945 Score: 89
Period size: 19 Copynumber: 3.8 Consensus size: 22
31942857 ATTATCTTCA
31942867 ATGATATGCAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
31942886 ATGATATGCAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
31942905 ATGATATGCAATCTTAGAAGAT
1 ATGATATGCAATCTTAGAAGAT
* *
31942927 ATGATTTTGTAATCTTAGA
1 ATGA-TATGCAATCTTAGA
31942946 GATTTAATTT
Statistics
Matches: 54, Mismatches: 2, Indels: 4
0.90 0.03 0.07
Matches are distributed among these distances:
19 34 0.63
22 8 0.15
23 12 0.22
ACGTcount: A:0.37, C:0.09, G:0.16, T:0.38
Consensus pattern (22 bp):
ATGATATGCAATCTTAGAAGAT
Found at i:31943232 original size:18 final size:17
Alignment explanation
Indices: 31943209--31943242 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
31943199 CATGTTTCCC
*
31943209 TTTTTTTATATATTTTAA
1 TTTTTTAATA-ATTTTAA
31943227 TTTTTTAATAATTTTA
1 TTTTTTAATAATTTTA
31943243 GTATCATATC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (17 bp):
TTTTTTAATAATTTTAA
Found at i:31946681 original size:46 final size:47
Alignment explanation
Indices: 31946584--31946710 Score: 159
Period size: 46 Copynumber: 2.7 Consensus size: 47
31946574 AATGAAATGT
* * **
31946584 GTAAGACAATGGTTGAAAGATACCATGGCAACGTGACATGAAATGAA
1 GTAAGACCATGGTTGAAAGATACCATGGCAACATGACATGAAAACAA
* *
31946631 -TAAGACCATGGTTGAAAGATACCATGGCAATATGATA-GAAAACAA
1 GTAAGACCATGGTTGAAAGATACCATGGCAACATGACATGAAAACAA
* * *
31946676 GTAAGACCATAGTTGAAAGATACTATGGCATCATG
1 GTAAGACCATGGTTGAAAGATACCATGGCAACATG
31946711 TCGAAGATAA
Statistics
Matches: 69, Mismatches: 10, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
45 6 0.09
46 63 0.91
ACGTcount: A:0.43, C:0.13, G:0.23, T:0.21
Consensus pattern (47 bp):
GTAAGACCATGGTTGAAAGATACCATGGCAACATGACATGAAAACAA
Found at i:31946833 original size:26 final size:26
Alignment explanation
Indices: 31946793--31946842 Score: 64
Period size: 26 Copynumber: 1.9 Consensus size: 26
31946783 ACCATATGAC
*
31946793 AAATGGTTATATGAATTGGTTATACA
1 AAATGGTTATATGAAATGGTTATACA
* * *
31946819 AAATGGTTGTGTGAAATGTTTATA
1 AAATGGTTATATGAAATGGTTATA
31946843 GGAATTGGTC
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 20 1.00
ACGTcount: A:0.36, C:0.02, G:0.22, T:0.40
Consensus pattern (26 bp):
AAATGGTTATATGAAATGGTTATACA
Found at i:31954093 original size:19 final size:18
Alignment explanation
Indices: 31954064--31954099 Score: 63
Period size: 19 Copynumber: 1.9 Consensus size: 18
31954054 ATATCAAAAA
31954064 TAAAAAAATAAAAATAAG
1 TAAAAAAATAAAAATAAG
31954082 TAAAAGAAATAAAAATAA
1 TAAAA-AAATAAAAATAA
31954100 AATCTATCCT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
18 5 0.29
19 12 0.71
ACGTcount: A:0.78, C:0.00, G:0.06, T:0.17
Consensus pattern (18 bp):
TAAAAAAATAAAAATAAG
Found at i:31955797 original size:22 final size:22
Alignment explanation
Indices: 31955770--31955812 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
31955760 TTTCATATCA
31955770 AAAATAAA-AAATAAAAATAAAC
1 AAAATAAATAAAT-AAAATAAAC
31955792 AAAATAAATAAATAAAATAAA
1 AAAATAAATAAATAAAATAAA
31955813 ATCTAACCTT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
22 16 0.80
23 4 0.20
ACGTcount: A:0.81, C:0.02, G:0.00, T:0.16
Consensus pattern (22 bp):
AAAATAAATAAATAAAATAAAC
Found at i:31957296 original size:3 final size:3
Alignment explanation
Indices: 31957288--31957576 Score: 150
Period size: 3 Copynumber: 96.0 Consensus size: 3
31957278 AAAAATAGAA
* * * *
31957288 AAT AAT AAT -AT ATT AAT AAG AAT TAT AAT AAT ATAT ATT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A-AT AAT AAT AAT
* * ** *
31957333 AACA AAT AAT AA- AA- AAT AAC AAT GGGTT AAT AA- AGAT AAT AGT AAT
1 AA-T AAT AAT AAT AAT AAT AAT AAT --AAT AAT AAT A-AT AAT AAT AAT
* * * *
31957379 AAT AGAT -GT AAA AAC AAT AAT AAT AAT AA- ATAT AAT AAT AGT AAT
1 AAT A-AT AAT AAT AAT AAT AAT AAT AAT AAT A-AT AAT AAT AAT AAT
** * * *
31957424 AAT AAT -AT GCT AAAT AAT AGT AGT AA- AA- AAT AAT AGT AAT AAT
1 AAT AAT AAT AAT -AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
* * * *
31957467 AAG AAT ATT AAT AAT AGT AAT AAT AAC AAT AAT -AT AATT AAT ATAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA-T AAT A-AT
* * *
31957513 ATAT GA- AAT AAT AAT AAC AAT AAT AAT AAT AAT AAAT AAT AGT AAT
1 A-AT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT -AAT AAT AAT AAT
* *
31957559 GAT AAT AAT AAA AAT AAT
1 AAT AAT AAT AAT AAT AAT
31957577 TAATTTGAAA
Statistics
Matches: 216, Mismatches: 50, Indels: 40
0.71 0.16 0.13
Matches are distributed among these distances:
2 18 0.08
3 175 0.81
4 22 0.10
5 1 0.00
ACGTcount: A:0.61, C:0.02, G:0.06, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:31957340 original size:23 final size:24
Alignment explanation
Indices: 31957287--31957343 Score: 71
Period size: 25 Copynumber: 2.3 Consensus size: 24
31957277 CAAAAATAGA
*
31957287 AAATAATAATATATTAATAAGAATT
1 AAATAAT-ATATATTAATAAGAATC
*
31957312 ATAATAATATATATTAATAATAA-C
1 A-AATAATATATATTAATAAGAATC
31957336 AAATAATA
1 AAATAATA
31957344 AAAAATAACA
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
23 7 0.24
24 1 0.03
25 15 0.52
26 6 0.21
ACGTcount: A:0.61, C:0.02, G:0.02, T:0.35
Consensus pattern (24 bp):
AAATAATATATATTAATAAGAATC
Found at i:31959874 original size:26 final size:26
Alignment explanation
Indices: 31959838--31959921 Score: 150
Period size: 26 Copynumber: 3.2 Consensus size: 26
31959828 TGATACAAAT
31959838 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
31959864 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
31959890 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
31959916 TGATAA
1 TGATAA
31959922 GAATTTCATG
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 56 1.00
ACGTcount: A:0.35, C:0.06, G:0.24, T:0.36
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTCCA
Found at i:31961576 original size:27 final size:27
Alignment explanation
Indices: 31961535--31961661 Score: 182
Period size: 27 Copynumber: 4.7 Consensus size: 27
31961525 GAGGAAGCGT
*
31961535 TCTGGTGGCTATGCCACAAATATCTGA
1 TCTGGTGGCTCTGCCACAAATATCTGA
31961562 TCTGGTGGCTCTGCCACAAATATCTGA
1 TCTGGTGGCTCTGCCACAAATATCTGA
* *
31961589 TCTGGTGGCTCTGCCACATATATCTGT
1 TCTGGTGGCTCTGCCACAAATATCTGA
* *
31961616 TCTGGTGGCTCTGCCACGATTATCTGTA
1 TCTGGTGGCTCTGCCACAAATATCTG-A
* *
31961644 TCTGGTGACTCTGTCACA
1 TCTGGTGGCTCTGCCACA
31961662 TTATCTGTTC
Statistics
Matches: 89, Mismatches: 10, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
27 74 0.83
28 15 0.17
ACGTcount: A:0.19, C:0.25, G:0.23, T:0.33
Consensus pattern (27 bp):
TCTGGTGGCTCTGCCACAAATATCTGA
Found at i:31961620 original size:54 final size:55
Alignment explanation
Indices: 31961535--31961673 Score: 201
Period size: 54 Copynumber: 2.6 Consensus size: 55
31961525 GAGGAAGCGT
* * *
31961535 TCTGGTGGCTATGCCACAAATATCTGATCTGGTGGCTCTGCCACAAATATCTG-A
1 TCTGGTGGCTCTGCCACATATATCTGTTCTGGTGGCTCTGCCACAAATATCTGTA
* *
31961589 TCTGGTGGCTCTGCCACATATATCTGTTCTGGTGGCTCTGCCACGATTATCTGTA
1 TCTGGTGGCTCTGCCACATATATCTGTTCTGGTGGCTCTGCCACAAATATCTGTA
* *
31961644 TCTGGTGACTCTGTCACAT-TATCTGTTCTG
1 TCTGGTGGCTCTGCCACATATATCTGTTCTG
31961674 CAGCCATGCT
Statistics
Matches: 77, Mismatches: 7, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
54 59 0.77
55 18 0.23
ACGTcount: A:0.18, C:0.24, G:0.22, T:0.35
Consensus pattern (55 bp):
TCTGGTGGCTCTGCCACATATATCTGTTCTGGTGGCTCTGCCACAAATATCTGTA
Found at i:31965672 original size:26 final size:26
Alignment explanation
Indices: 31965636--31965719 Score: 141
Period size: 26 Copynumber: 3.2 Consensus size: 26
31965626 TGATACAAAT
31965636 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
31965662 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* * *
31965688 TGCTAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
31965714 TGATAA
1 TGATAA
31965720 GAATTTCATG
Statistics
Matches: 54, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 54 1.00
ACGTcount: A:0.33, C:0.07, G:0.24, T:0.36
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTCCA
Found at i:31967380 original size:27 final size:27
Alignment explanation
Indices: 31967339--31967478 Score: 174
Period size: 27 Copynumber: 5.2 Consensus size: 27
31967329 GAGGAAGCGT
*
31967339 TCTGGTGGCTATGCCACAAATATCTGA
1 TCTGGTGGCTCTGCCACAAATATCTGA
31967366 TCTGGTGGCTCTGCCACAAATATCTGA
1 TCTGGTGGCTCTGCCACAAATATCTGA
* * *
31967393 TCTAGTGGCTCTGCCACATATATCTGT
1 TCTGGTGGCTCTGCCACAAATATCTGA
* *
31967420 TCTGGTGGCTCTGCCACGATTATCTGTA
1 TCTGGTGGCTCTGCCACAAATATCTG-A
* * * *
31967448 TCTGGTGACTCTGTCAC-ATTATCTGT
1 TCTGGTGGCTCTGCCACAAATATCTGA
31967474 TCTGG
1 TCTGG
31967479 CAGCCATGCT
Statistics
Matches: 100, Mismatches: 12, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
26 5 0.05
27 80 0.80
28 15 0.15
ACGTcount: A:0.19, C:0.24, G:0.22, T:0.35
Consensus pattern (27 bp):
TCTGGTGGCTCTGCCACAAATATCTGA
Found at i:31971471 original size:13 final size:13
Alignment explanation
Indices: 31971422--31971482 Score: 54
Period size: 13 Copynumber: 4.7 Consensus size: 13
31971412 AAAGTACGTC
*
31971422 TCAAAAGCACTTCT
1 TCAAAAGCA-TTTT
31971436 T-AAAAGCATTTT
1 TCAAAAGCATTTT
* *
31971448 CCCACAA-CATTTT
1 -TCAAAAGCATTTT
*
31971461 TTAAAAGCATTTT
1 TCAAAAGCATTTT
31971474 TCAAAAGCA
1 TCAAAAGCA
31971483 ATGTTAAATT
Statistics
Matches: 37, Mismatches: 7, Indels: 7
0.73 0.14 0.14
Matches are distributed among these distances:
12 6 0.16
13 27 0.73
14 4 0.11
ACGTcount: A:0.39, C:0.21, G:0.07, T:0.33
Consensus pattern (13 bp):
TCAAAAGCATTTT
Found at i:31978060 original size:19 final size:19
Alignment explanation
Indices: 31978038--31978084 Score: 53
Period size: 19 Copynumber: 2.5 Consensus size: 19
31978028 TACAATATAT
31978038 ATCAATTTTTTTTCAAAA-A
1 ATCAATTTTTTTT-AAAAGA
*
31978057 ATCAATTCATTTTTAAAAGA
1 ATCAATT-TTTTTTAAAAGA
31978077 ATC-ATTTT
1 ATCAATTTT
31978085 CGGACAACCT
Statistics
Matches: 24, Mismatches: 2, Indels: 5
0.77 0.06 0.16
Matches are distributed among these distances:
18 1 0.04
19 14 0.58
20 9 0.38
ACGTcount: A:0.40, C:0.11, G:0.02, T:0.47
Consensus pattern (19 bp):
ATCAATTTTTTTTAAAAGA
Found at i:31981686 original size:6 final size:6
Alignment explanation
Indices: 31981676--31981722 Score: 55
Period size: 6 Copynumber: 8.2 Consensus size: 6
31981666 GAAGAAGAAT
*
31981676 AAAAATG AAAAAG -AAAAG AAAAAG AAAAAG --AAAG AAAAAT AAAAAG
1 AAAAA-G AAAAAG AAAAAG AAAAAG AAAAAG AAAAAG AAAAAG AAAAAG
31981722 A
1 A
31981723 GGCAGGAAAG
Statistics
Matches: 35, Mismatches: 2, Indels: 7
0.80 0.05 0.16
Matches are distributed among these distances:
4 4 0.11
5 5 0.14
6 21 0.60
7 5 0.14
ACGTcount: A:0.81, C:0.00, G:0.15, T:0.04
Consensus pattern (6 bp):
AAAAAG
Found at i:31981689 original size:16 final size:16
Alignment explanation
Indices: 31981670--31981722 Score: 63
Period size: 17 Copynumber: 3.2 Consensus size: 16
31981660 GGAATAGAAG
*
31981670 AAGAATAAAAATGAAA
1 AAGAAAAAAAATGAAA
*
31981686 AAGAAAAGAAAAAGAAA
1 AAGAAAA-AAAATGAAA
31981703 AAGAAAGAAAAAT-AAA
1 AAGAAA-AAAAATGAAA
31981719 AAGA
1 AAGA
31981723 GGCAGGAAAG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
16 13 0.41
17 18 0.56
18 1 0.03
ACGTcount: A:0.79, C:0.00, G:0.15, T:0.06
Consensus pattern (16 bp):
AAGAAAAAAAATGAAA
Found at i:31981702 original size:17 final size:17
Alignment explanation
Indices: 31981676--31981722 Score: 69
Period size: 16 Copynumber: 2.8 Consensus size: 17
31981666 GAAGAAGAAT
31981676 AAAAATGAAAAAGAAAAG
1 AAAAA-GAAAAAGAAAAG
31981694 AAAAAGAAAAAG-AAAG
1 AAAAAGAAAAAGAAAAG
*
31981710 AAAAATAAAAAGA
1 AAAAAGAAAAAGA
31981723 GGCAGGAAAG
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
16 15 0.56
17 7 0.26
18 5 0.19
ACGTcount: A:0.81, C:0.00, G:0.15, T:0.04
Consensus pattern (17 bp):
AAAAAGAAAAAGAAAAG
Found at i:31981719 original size:27 final size:27
Alignment explanation
Indices: 31981665--31981719 Score: 67
Period size: 27 Copynumber: 2.0 Consensus size: 27
31981655 AGAAAGGAAT
* *
31981665 AGAAGAAGAATAAAAATGAAAAAGAAA
1 AGAAAAAGAATAAAAAAGAAAAAGAAA
*
31981692 AGAAAAAGAA-AAAGAAAGAAAAATAAA
1 AGAAAAAGAATAAA-AAAGAAAAAGAAA
31981719 A
1 A
31981720 AGAGGCAGGA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
26 3 0.12
27 21 0.88
ACGTcount: A:0.78, C:0.00, G:0.16, T:0.05
Consensus pattern (27 bp):
AGAAAAAGAATAAAAAAGAAAAAGAAA
Found at i:31985321 original size:41 final size:41
Alignment explanation
Indices: 31985229--31985436 Score: 278
Period size: 41 Copynumber: 5.1 Consensus size: 41
31985219 CAAAAATTAA
* **
31985229 AAAAACACAGAGCAATAGCGACG-TTTTACCAAAAACGCCGCT
1 AAAAAC-CAGAGCAATAGCGGCGCTTTTGGC-AAAACGCCGCT
*
31985271 AAAAA-CAGAGCAATAGCGGCGCTATTGGCAAAACGCCGCT
1 AAAAACCAGAGCAATAGCGGCGCTTTTGGCAAAACGCCGCT
* * *
31985311 AAAAACCAGAGCATTAGCAGCGCTTTTGGAAAAACGCCGCT
1 AAAAACCAGAGCAATAGCGGCGCTTTTGGCAAAACGCCGCT
31985352 AAAAACC-GAGCAATAGCGGCGCTTTTGGCAAAACGCCGCT
1 AAAAACCAGAGCAATAGCGGCGCTTTTGGCAAAACGCCGCT
* * * *
31985392 AAAAACCAGAGCATTAGCGGCGCTTTCGACAAAACGCCACT
1 AAAAACCAGAGCAATAGCGGCGCTTTTGGCAAAACGCCGCT
31985433 AAAA
1 AAAA
31985437 GTCATATAAC
Statistics
Matches: 148, Mismatches: 15, Indels: 7
0.87 0.09 0.04
Matches are distributed among these distances:
40 68 0.46
41 75 0.51
42 5 0.03
ACGTcount: A:0.38, C:0.26, G:0.21, T:0.14
Consensus pattern (41 bp):
AAAAACCAGAGCAATAGCGGCGCTTTTGGCAAAACGCCGCT
Found at i:31985371 original size:81 final size:80
Alignment explanation
Indices: 31985259--31985436 Score: 293
Period size: 81 Copynumber: 2.2 Consensus size: 80
31985249 ACGTTTTACC
31985259 AAAAACGCCGCTAAAAACAGAGCAATAGCGGCGCTATTGGCAAAACGCCGCTAAAAACCAGAGCA
1 AAAAACGCCGCTAAAAACAGAGCAATAGCGGCGCTATTGGCAAAACGCCGCTAAAAACCAGAGCA
*
31985324 TTAGCAGCGCTTTTGG
66 TTAGCAGCGC-TTTCG
* *
31985340 AAAAACGCCGCTAAAAACCGAGCAATAGCGGCGCTTTTGGCAAAACGCCGCTAAAAACCAGAGCA
1 AAAAACGCCGCTAAAAACAGAGCAATAGCGGCGCTATTGGCAAAACGCCGCTAAAAACCAGAGCA
*
31985405 TTAGCGGCGCTTTCG
66 TTAGCAGCGCTTTCG
*
31985420 ACAAAACGCCACTAAAA
1 A-AAAACGCCGCTAAAA
31985437 GTCATATAAC
Statistics
Matches: 91, Mismatches: 5, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
80 5 0.05
81 86 0.95
ACGTcount: A:0.38, C:0.26, G:0.22, T:0.14
Consensus pattern (80 bp):
AAAAACGCCGCTAAAAACAGAGCAATAGCGGCGCTATTGGCAAAACGCCGCTAAAAACCAGAGCA
TTAGCAGCGCTTTCG
Found at i:31985598 original size:25 final size:25
Alignment explanation
Indices: 31985564--31985613 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
31985554 AGATATAGTA
31985564 TTGAATTTAAAATATCGAATTAATT
1 TTGAATTTAAAATATCGAATTAATT
31985589 TTGAATTTAAAATATCGAATTAATT
1 TTGAATTTAAAATATCGAATTAATT
31985614 ATCATTATAG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.44, C:0.04, G:0.08, T:0.44
Consensus pattern (25 bp):
TTGAATTTAAAATATCGAATTAATT
Found at i:31985657 original size:21 final size:22
Alignment explanation
Indices: 31985630--31985710 Score: 87
Period size: 21 Copynumber: 3.6 Consensus size: 22
31985620 ATAGTTTAAG
31985630 GTTTAGGGTTTAAGATATATGA
1 GTTTAGGGTTTAAGATATATGA
*
31985652 -TTTAGGGTTTAATG-TTTATGA
1 GTTTAGGGTTTAA-GATATATGA
*
31985673 GTTAACTATGGTTTAAGATATAT-A
1 GTT---TAGGGTTTAAGATATATGA
31985697 GTTTAGGGTTTAAG
1 GTTTAGGGTTTAAG
31985711 GTTTAGGAGT
Statistics
Matches: 49, Mismatches: 4, Indels: 13
0.74 0.06 0.20
Matches are distributed among these distances:
21 28 0.57
22 3 0.06
24 5 0.10
25 13 0.27
ACGTcount: A:0.30, C:0.01, G:0.25, T:0.44
Consensus pattern (22 bp):
GTTTAGGGTTTAAGATATATGA
Found at i:31985689 original size:46 final size:46
Alignment explanation
Indices: 31985636--31985726 Score: 148
Period size: 46 Copynumber: 2.0 Consensus size: 46
31985626 TAAGGTTTAG
* *
31985636 GGTTTAAGATATAT-GATTTAGGGTTTAATGTTTATGAGTTAACTAT
1 GGTTTAAGATATATAG-TTTAGGGTTTAAGGTTTAGGAGTTAACTAT
31985682 GGTTTAAGATATATAGTTTAGGGTTTAAGGTTTAGGAGTTAACTA
1 GGTTTAAGATATATAGTTTAGGGTTTAAGGTTTAGGAGTTAACTA
31985727 GTATTTGAAG
Statistics
Matches: 42, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
46 41 0.98
47 1 0.02
ACGTcount: A:0.31, C:0.02, G:0.24, T:0.43
Consensus pattern (46 bp):
GGTTTAAGATATATAGTTTAGGGTTTAAGGTTTAGGAGTTAACTAT
Found at i:31986310 original size:74 final size:70
Alignment explanation
Indices: 31986231--31986365 Score: 175
Period size: 71 Copynumber: 1.9 Consensus size: 70
31986221 TTAAGTAAAA
*
31986231 TTTAATTAGAA-ATTTAAGGGG-TTAGTGGCGTTTTTTGAAAAAACGCCGCAAAAAATAAAATAA
1 TTTAATT-GAAGATTT-AGGGGATTAGTGGCG---TTTAAAAAAACGCCGCAAAAAA-AAAATAA
31986294 TTTAACGTCAT
60 TTTAACGTCAT
* *
31986305 TTTAATTGAAGATTTAGGGGATTAGTGGCGTTTAAAAAAACGCCGCAAGAAAAACATAATT
1 TTTAATTGAAGATTTAGGGGATTAGTGGCGTTTAAAAAAACGCCGCAAAAAAAAAATAATT
31986366 GTTTACTTAG
Statistics
Matches: 56, Mismatches: 3, Indels: 8
0.84 0.04 0.12
Matches are distributed among these distances:
70 8 0.14
71 20 0.36
73 8 0.14
74 20 0.36
ACGTcount: A:0.41, C:0.10, G:0.19, T:0.30
Consensus pattern (70 bp):
TTTAATTGAAGATTTAGGGGATTAGTGGCGTTTAAAAAAACGCCGCAAAAAAAAAATAATTTAAC
GTCAT
Found at i:31988443 original size:20 final size:20
Alignment explanation
Indices: 31988418--31988458 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
31988408 TTACTATAAA
31988418 TCTTATTGGTAAAATTTTGC
1 TCTTATTGGTAAAATTTTGC
31988438 TCTTATTGGTAAAATTTTGC
1 TCTTATTGGTAAAATTTTGC
31988458 T
1 T
31988459 ATCTGTCCTG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.24, C:0.10, G:0.15, T:0.51
Consensus pattern (20 bp):
TCTTATTGGTAAAATTTTGC
Found at i:31989769 original size:17 final size:18
Alignment explanation
Indices: 31989747--31989780 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
31989737 TACATGTGGG
31989747 GGAATATGGAG-TCAACT
1 GGAATATGGAGTTCAACT
31989764 GGAATATGGAGTTCAAC
1 GGAATATGGAGTTCAAC
31989781 ATTTTGGCAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 11 0.69
18 5 0.31
ACGTcount: A:0.35, C:0.12, G:0.29, T:0.24
Consensus pattern (18 bp):
GGAATATGGAGTTCAACT
Found at i:31990219 original size:86 final size:85
Alignment explanation
Indices: 31990093--31990298 Score: 261
Period size: 86 Copynumber: 2.4 Consensus size: 85
31990083 TTTTTTAAGA
* * ** *
31990093 TCATTGTTTTTAGCGGCGTTTGTGAAAAAAGCGCTGCTAAAGGTTATAGTCTTTAGCGGCGTTTG
1 TCATAGTTTTTAGCGGCGTTTGAGAAAAAAGCGCCACTAAAGGTCATAGTCTTTAGCGGCGTTT-
*
31990158 CTTAAAAAGCGCCGCTAAAGG
65 CTTAAAAAGCGCCGCTAAAAG
* * * *
31990179 TCATGGTTTTTAGCGGCGTTTGAGAAAAAAGCGCCACTAAAGGTCATGGTTTTTAGCGGCGTTTT
1 TCATAGTTTTTAGCGGCGTTTGAGAAAAAAGCGCCACTAAAGGTCATAGTCTTTAGCGGCGTTTC
*
31990244 TTTAAAAGCGCCGCTAAAAG
66 TTAAAAAGCGCCGCTAAAAG
* * *
31990264 TCCTAGTCTTTAGCGGCATTTGCA-AAAAAAGCGCC
1 TCATAGTTTTTAGCGGCGTTTG-AGAAAAAAGCGCC
31990299 GCTTAAAAAC
Statistics
Matches: 105, Mismatches: 14, Indels: 3
0.86 0.11 0.02
Matches are distributed among these distances:
85 47 0.45
86 58 0.55
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.30
Consensus pattern (85 bp):
TCATAGTTTTTAGCGGCGTTTGAGAAAAAAGCGCCACTAAAGGTCATAGTCTTTAGCGGCGTTTC
TTAAAAAGCGCCGCTAAAAG
Found at i:31990276 original size:42 final size:43
Alignment explanation
Indices: 31990101--31990301 Score: 226
Period size: 43 Copynumber: 4.7 Consensus size: 43
31990091 GATCATTGTT
* *
31990101 TTTAGCGGCGTTTGTGAAAAAAGCGCTGCTAAAGGTTATAGTC
1 TTTAGCGGCGTTTGTGAAAAAAGCGCCGCTAAAGGTCATAGTC
* * *
31990144 TTTAGCGGCGTTTGCT-TAAAAAGCGCCGCTAAAGGTCATGGTT
1 TTTAGCGGCGTTTG-TGAAAAAAGCGCCGCTAAAGGTCATAGTC
* * * *
31990187 TTTAGCGGCGTTTGAGAAAAAAGCGCCACTAAAGGTCATGGTT
1 TTTAGCGGCGTTTGTGAAAAAAGCGCCGCTAAAGGTCATAGTC
*** * *
31990230 TTTAGCGGCGTTT-TTTTAAAAGCGCCGCTAAAAGTCCTAGTC
1 TTTAGCGGCGTTTGTGAAAAAAGCGCCGCTAAAGGTCATAGTC
* **
31990272 TTTAGCGGCATTTGCAAAAAAAGCGCCGCT
1 TTTAGCGGCGTTTGTGAAAAAAGCGCCGCT
31990302 TAAAAACACC
Statistics
Matches: 133, Mismatches: 22, Indels: 6
0.83 0.14 0.04
Matches are distributed among these distances:
42 32 0.24
43 100 0.75
44 1 0.01
ACGTcount: A:0.27, C:0.18, G:0.26, T:0.29
Consensus pattern (43 bp):
TTTAGCGGCGTTTGTGAAAAAAGCGCCGCTAAAGGTCATAGTC
Found at i:31991973 original size:17 final size:17
Alignment explanation
Indices: 31991942--31991999 Score: 52
Period size: 17 Copynumber: 3.6 Consensus size: 17
31991932 TAATAAATTT
*
31991942 AAAATATAATATATAATA
1 AAAATAT-ATTTATAATA
*
31991960 AAAATATATTTATAAGA
1 AAAATATATTTATAATA
*
31991977 ATAATA-A-TTAT-AT-
1 AAAATATATTTATAATA
31991990 AAAATATATT
1 AAAATATATT
31992000 GGTTTAGAAA
Statistics
Matches: 33, Mismatches: 5, Indels: 7
0.73 0.11 0.16
Matches are distributed among these distances:
13 5 0.15
14 2 0.06
15 5 0.15
16 1 0.03
17 13 0.39
18 7 0.21
ACGTcount: A:0.60, C:0.00, G:0.02, T:0.38
Consensus pattern (17 bp):
AAAATATATTTATAATA
Found at i:31992509 original size:18 final size:17
Alignment explanation
Indices: 31992473--31992605 Score: 176
Period size: 18 Copynumber: 7.5 Consensus size: 17
31992463 AATCATATCT
31992473 TCTAAGATTGTATATCATA
1 TCTAAGATTG-A-ATCATA
31992492 TCTAAGATTGCAATCATA
1 TCTAAGATTG-AATCATA
*
31992510 TCTAAGATTGTATCATA
1 TCTAAGATTGAATCATA
31992527 TCTAAGATTGCAATCATA
1 TCTAAGATTG-AATCATA
* *
31992545 TCTAAGATTGTATTATA
1 TCTAAGATTGAATCATA
31992562 TCTAAGATTGCAATCATA
1 TCTAAGATTG-AATCATA
* *
31992580 TTTAAGATTGTATCATA
1 TCTAAGATTGAATCATA
31992597 TCTAAGATT
1 TCTAAGATT
31992606 ACCTATCATT
Statistics
Matches: 102, Mismatches: 10, Indels: 6
0.86 0.08 0.05
Matches are distributed among these distances:
17 45 0.44
18 46 0.45
19 11 0.11
ACGTcount: A:0.37, C:0.12, G:0.11, T:0.40
Consensus pattern (17 bp):
TCTAAGATTGAATCATA
Found at i:31992531 original size:35 final size:35
Alignment explanation
Indices: 31992473--31992605 Score: 230
Period size: 35 Copynumber: 3.7 Consensus size: 35
31992463 AATCATATCT
31992473 TCTAAGATTGTATATCATATCTAAGATTGCAATCATA
1 TCTAAGATTG--TATCATATCTAAGATTGCAATCATA
31992510 TCTAAGATTGTATCATATCTAAGATTGCAATCATA
1 TCTAAGATTGTATCATATCTAAGATTGCAATCATA
*
31992545 TCTAAGATTGTATTATATCTAAGATTGCAATCATA
1 TCTAAGATTGTATCATATCTAAGATTGCAATCATA
*
31992580 TTTAAGATTGTATCATATCTAAGATT
1 TCTAAGATTGTATCATATCTAAGATT
31992606 ACCTATCATT
Statistics
Matches: 93, Mismatches: 3, Indels: 2
0.95 0.03 0.02
Matches are distributed among these distances:
35 83 0.89
37 10 0.11
ACGTcount: A:0.37, C:0.12, G:0.11, T:0.40
Consensus pattern (35 bp):
TCTAAGATTGTATCATATCTAAGATTGCAATCATA
Found at i:31996645 original size:14 final size:13
Alignment explanation
Indices: 31996626--31996655 Score: 51
Period size: 13 Copynumber: 2.2 Consensus size: 13
31996616 AAATATCAAC
31996626 TAAAAATCAAAATT
1 TAAAAATC-AAATT
31996640 TAAAAATCAAATT
1 TAAAAATCAAATT
31996653 TAA
1 TAA
31996656 TCTAAAGATA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 8 0.50
14 8 0.50
ACGTcount: A:0.63, C:0.07, G:0.00, T:0.30
Consensus pattern (13 bp):
TAAAAATCAAATT
Found at i:31997004 original size:40 final size:40
Alignment explanation
Indices: 31996960--31997054 Score: 163
Period size: 40 Copynumber: 2.4 Consensus size: 40
31996950 GCGTTTTCCC
*
31996960 AAAAACGCCGCTAAAGGTGGACCTATAGCGGCGTTTCTGG
1 AAAAACGCCACTAAAGGTGGACCTATAGCGGCGTTTCTGG
* *
31997000 AAAAACGCCACTAAGGGTGGACCTATAGCGGCGTTTTTGG
1 AAAAACGCCACTAAAGGTGGACCTATAGCGGCGTTTCTGG
31997040 AAAAACGCCACTAAA
1 AAAAACGCCACTAAA
31997055 ATGTTAAGAA
Statistics
Matches: 51, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 51 1.00
ACGTcount: A:0.33, C:0.22, G:0.26, T:0.19
Consensus pattern (40 bp):
AAAAACGCCACTAAAGGTGGACCTATAGCGGCGTTTCTGG
Found at i:31997147 original size:154 final size:152
Alignment explanation
Indices: 31996791--31997167 Score: 416
Period size: 154 Copynumber: 2.5 Consensus size: 152
31996781 GATGGAGTTT
* * * * * *
31996791 TAGCGGCGTTTTTCAAAAAACGCCGCAATAGGTCAAGCTTTCGCGGCGTTTTTTGAAAAGGCACC
1 TAGCGGCGTTTTCCCAAAAACGCCGCAATAGGTCAAACTTTAGCGGCGTTTTTGGAAAA-ACACC
* * * * ** *
31996856 GCTATAGGTCGGCCTTTAGCGGCGTTTTACCAAAACGCCGCTAAAAGGTTAATCAAAACGACGTC
65 ACTA-AGGTCGGCCTATAGCGGCGTTTTACAAAAACGCCACTAAAAGGTTAAGAAAAACAACGTC
* *
31996921 GTTTTACATGAGCTTCATTGGCAG
129 ATTTTACATGAGCTTCATTGGCAA
* ** * * * *
31996945 TAACGGCGTTTTCCCAAAAACGCCGCTAA-AGGTGGACCTATAGCGGCGTTTCTGGAAAAACGCC
1 TAGCGGCGTTTTCCCAAAAACGCCGC-AATAGGTCAAACTTTAGCGGCGTTTTTGGAAAAACACC
** *
31997009 ACTAAGGGT-GGACCTATAGCGGCGTTTTTGGAAAAACGCCACTAAAATGTTAAGAAAAACAACG
65 ACTAA-GGTCGG-CCTATAGCGGCG-TTTTACAAAAACGCCACTAAAAGGTTAAGAAAAACAACG
*
31997073 TCATTTTATATGAGCTTCATTGGCAA
127 TCATTTTACATGAGCTTCATTGGCAA
* * * *
31997099 TAGCGGCGTTTTCCCAAAAACGCCGCCATAGGTCAAACTTTAGTGGCGTTTTTGAAAAAACTCCA
1 TAGCGGCGTTTTCCCAAAAACGCCGCAATAGGTCAAACTTTAGCGGCGTTTTTGGAAAAACACCA
31997164 CTAA
66 CTAA
31997168 AATGTTAAGA
Statistics
Matches: 183, Mismatches: 35, Indels: 10
0.80 0.15 0.04
Matches are distributed among these distances:
152 3 0.02
153 21 0.11
154 157 0.86
155 2 0.01
ACGTcount: A:0.30, C:0.22, G:0.23, T:0.25
Consensus pattern (152 bp):
TAGCGGCGTTTTCCCAAAAACGCCGCAATAGGTCAAACTTTAGCGGCGTTTTTGGAAAAACACCA
CTAAGGTCGGCCTATAGCGGCGTTTTACAAAAACGCCACTAAAAGGTTAAGAAAAACAACGTCAT
TTTACATGAGCTTCATTGGCAA
Found at i:31997188 original size:114 final size:114
Alignment explanation
Indices: 31997025--31997351 Score: 489
Period size: 114 Copynumber: 2.9 Consensus size: 114
31997015 GGTGGACCTA
* *
31997025 TAGCGGCGTTTTTGGAAAAACGCCACTAAAATGTTAAGAAAAACAACGTCATTTTATATGAGCTT
1 TAGCGGCGTTTTTGAAAAAACGCCACTAAAATGTTAAGAAAAACGACGTCATTTTATATGAGCTT
* *
31997090 CATTGGCAATAGCGGCGTTTTCCCAAAAACGCCGCCA-TAGGTCAAACTT
66 CATTGGCAGTAGCGGCGTTTT-CCAAAAACGCCGCCAGTAGATCAAACTT
* * *
31997139 TAGTGGCGTTTTTGAAAAAACTCCACTAAAATGTTAAGAAAAACGACGTCATTTTATATGTGCTT
1 TAGCGGCGTTTTTGAAAAAACGCCACTAAAATGTTAAGAAAAACGACGTCATTTTATATGAGCTT
*
31997204 CATTGGCAGTAGCGGCGTTTTTCCAAAAATGCCG-CAGTAGATCAAACTT
66 CATTGGCAGTAGCGGCG-TTTTCCAAAAACGCCGCCAGTAGATCAAACTT
** *
31997253 TAGCGGCGTTTTTTCAAAAACGCCGCTAAAATGTTAAGAAAAACGACGTCATTTTATATGAGCTT
1 TAGCGGCGTTTTTGAAAAAACGCCACTAAAATGTTAAGAAAAACGACGTCATTTTATATGAGCTT
* *
31997318 CATTGTCAGTAGCGGCGCTTTT-TAAAAACGCCGC
66 CATTGGCAGTAGCGGCG-TTTTCCAAAAACGCCGC
31997352 AATTGCTAAA
Statistics
Matches: 192, Mismatches: 18, Indels: 6
0.89 0.08 0.03
Matches are distributed among these distances:
113 11 0.06
114 177 0.92
115 4 0.02
ACGTcount: A:0.32, C:0.20, G:0.20, T:0.29
Consensus pattern (114 bp):
TAGCGGCGTTTTTGAAAAAACGCCACTAAAATGTTAAGAAAAACGACGTCATTTTATATGAGCTT
CATTGGCAGTAGCGGCGTTTTCCAAAAACGCCGCCAGTAGATCAAACTT
Found at i:31997802 original size:15 final size:14
Alignment explanation
Indices: 31997784--31997826 Score: 50
Period size: 15 Copynumber: 2.9 Consensus size: 14
31997774 TTTAATATTT
31997784 TTATAGGTTTAGGGG
1 TTAT-GGTTTAGGGG
*
31997799 TTATGGGTTTAAGGG
1 TTAT-GGTTTAGGGG
*
31997814 TTATGATTTAGGG
1 TTATGGTTTAGGG
31997827 TTGATGATTT
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
14 7 0.29
15 17 0.71
ACGTcount: A:0.21, C:0.00, G:0.37, T:0.42
Consensus pattern (14 bp):
TTATGGTTTAGGGG
Done.