Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102776486
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2328156 characters in sequence are not A, C, G, or T
File 98 of 325
Found at i:31997833 original size:14 final size:13
Alignment explanation
Indices: 31997791--31997856 Score: 60
Period size: 14 Copynumber: 4.7 Consensus size: 13
31997781 TTTTTATAGG
*
31997791 TTTAGGGGTTATGGG
1 TTTA-GGGTTAT-GA
31997806 TTTAAGGGTTATGA
1 TTT-AGGGTTATGA
31997820 TTTAGGGTTGATGA
1 TTTAGGGTT-ATGA
**
31997834 TTTATGTTTTATGA
1 TTTA-GGGTTATGA
31997848 TTTAGGGTT
1 TTTAGGGTT
31997857 TGAGGTTTAT
Statistics
Matches: 43, Mismatches: 5, Indels: 8
0.77 0.09 0.14
Matches are distributed among these distances:
13 9 0.21
14 20 0.47
15 13 0.30
16 1 0.02
ACGTcount: A:0.20, C:0.00, G:0.32, T:0.48
Consensus pattern (13 bp):
TTTAGGGTTATGA
Found at i:31997872 original size:28 final size:28
Alignment explanation
Indices: 31997814--31997872 Score: 75
Period size: 28 Copynumber: 2.1 Consensus size: 28
31997804 GGTTTAAGGG
**
31997814 TTATGATTTAGGGTTGATGATTTATGTT
1 TTATGATTTAGGGTTGATGATTTATAAT
*
31997842 TTATGATTTAGGGTTTGA-GGTTTATAAT
1 TTATGATTTAGGG-TTGATGATTTATAAT
31997870 TTA
1 TTA
31997873 AAAGGTTAGG
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
28 23 0.85
29 4 0.15
ACGTcount: A:0.24, C:0.00, G:0.24, T:0.53
Consensus pattern (28 bp):
TTATGATTTAGGGTTGATGATTTATAAT
Found at i:31997917 original size:14 final size:14
Alignment explanation
Indices: 31997898--31997924 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
31997888 ATGGTTTAAG
31997898 GGTTAGTGGTTAGT
1 GGTTAGTGGTTAGT
31997912 GGTTAGTGGTTAG
1 GGTTAGTGGTTAG
31997925 GATTAAGGGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.15, C:0.00, G:0.44, T:0.41
Consensus pattern (14 bp):
GGTTAGTGGTTAGT
Found at i:31998216 original size:7 final size:7
Alignment explanation
Indices: 31998204--31998270 Score: 64
Period size: 7 Copynumber: 9.6 Consensus size: 7
31998194 TAGGGGTTAA
31998204 TTAGGGT
1 TTAGGGT
31998211 TTAGGGT
1 TTAGGGT
* *
31998218 CTAGTGT
1 TTAGGGT
*
31998225 TTGGGGT
1 TTAGGGT
*
31998232 TTATGGT
1 TTAGGGT
31998239 TTAGGGT
1 TTAGGGT
*
31998246 TTATGGT
1 TTAGGGT
*
31998253 ATAGGG-
1 TTAGGGT
31998259 TTAGGGT
1 TTAGGGT
31998266 CTTAG
1 -TTAG
31998271 CATTGTTCAA
Statistics
Matches: 46, Mismatches: 12, Indels: 3
0.75 0.20 0.05
Matches are distributed among these distances:
6 5 0.11
7 37 0.80
8 4 0.09
ACGTcount: A:0.15, C:0.03, G:0.39, T:0.43
Consensus pattern (7 bp):
TTAGGGT
Found at i:31998380 original size:21 final size:21
Alignment explanation
Indices: 31998356--31998405 Score: 55
Period size: 21 Copynumber: 2.4 Consensus size: 21
31998346 TTTTTAGTGT
* *
31998356 TTTAGGGTTTAGGGTATATGG
1 TTTAGGGTTTAAGGTATAAGG
* * *
31998377 TTTAGTGCTTAAGGTTTAAGG
1 TTTAGGGTTTAAGGTATAAGG
31998398 TTTAGGGT
1 TTTAGGGT
31998406 ATATGATTTT
Statistics
Matches: 22, Mismatches: 7, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.20, C:0.02, G:0.34, T:0.44
Consensus pattern (21 bp):
TTTAGGGTTTAAGGTATAAGG
Found at i:32002751 original size:9 final size:9
Alignment explanation
Indices: 32002728--32002855 Score: 103
Period size: 9 Copynumber: 13.6 Consensus size: 9
32002718 ATTGATCATT
*
32002728 ACTTAAATA
1 ACTTACATA
*
32002737 AATTACATA
1 ACTTACATA
32002746 ACTTACATA
1 ACTTACATA
* *
32002755 ACTCATATA
1 ACTTACATA
32002764 ACTTACATA
1 ACTTACATA
*
32002773 ATTTACATAACA
1 ACTTACAT---A
32002785 ACTTACATA
1 ACTTACATA
* *
32002794 ACTCACATT
1 ACTTACATA
*
32002803 ACTTAAATA
1 ACTTACATA
*
32002812 AATTACATA
1 ACTTACATA
*
32002821 ACTCACATA
1 ACTTACATA
*
32002830 ACGTACATAACA
1 ACTTACAT---A
32002842 ACTTACATA
1 ACTTACATA
32002851 ACTTA
1 ACTTA
32002856 ACTAATACAT
Statistics
Matches: 92, Mismatches: 21, Indels: 12
0.74 0.17 0.10
Matches are distributed among these distances:
9 76 0.83
12 16 0.17
ACGTcount: A:0.48, C:0.20, G:0.01, T:0.31
Consensus pattern (9 bp):
ACTTACATA
Found at i:32002797 original size:39 final size:39
Alignment explanation
Indices: 32002728--32002822 Score: 133
Period size: 39 Copynumber: 2.5 Consensus size: 39
32002718 ATTGATCATT
*
32002728 ACTTAAATAAATTACAT---AACTTACATAACTCATATA
1 ACTTAAATAAATTACATAACAACTTACATAACTCACATA
* * *
32002764 ACTTACATAATTTACATAACAACTTACATAACTCACATT
1 ACTTAAATAAATTACATAACAACTTACATAACTCACATA
32002803 ACTTAAATAAATTACATAAC
1 ACTTAAATAAATTACATAAC
32002823 TCACATAACG
Statistics
Matches: 50, Mismatches: 6, Indels: 3
0.85 0.10 0.05
Matches are distributed among these distances:
36 15 0.30
39 35 0.70
ACGTcount: A:0.48, C:0.19, G:0.00, T:0.33
Consensus pattern (39 bp):
ACTTAAATAAATTACATAACAACTTACATAACTCACATA
Found at i:32002818 original size:48 final size:48
Alignment explanation
Indices: 32002739--32002831 Score: 123
Period size: 48 Copynumber: 1.9 Consensus size: 48
32002729 CTTAAATAAA
* * * * *
32002739 TTACATAACTTACATAACTCATATAACTTACATAATTTACATAACAAC
1 TTACATAACTCACATAACTCAAATAAATTACATAACTCACATAACAAC
* *
32002787 TTACATAACTCACATTACTTAAATAAATTACATAACTCACATAAC
1 TTACATAACTCACATAACTCAAATAAATTACATAACTCACATAAC
32002832 GTACATAACA
Statistics
Matches: 38, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
48 38 1.00
ACGTcount: A:0.46, C:0.22, G:0.00, T:0.32
Consensus pattern (48 bp):
TTACATAACTCACATAACTCAAATAAATTACATAACTCACATAACAAC
Found at i:32008772 original size:43 final size:43
Alignment explanation
Indices: 32008719--32008831 Score: 167
Period size: 43 Copynumber: 2.6 Consensus size: 43
32008709 ATTGGGCAAA
32008719 TTAGCGGCGTTTTTTTAAAAAGCGCCGCGAAAAGTCCTGGTCT
1 TTAGCGGCGTTTTTTTAAAAAGCGCCGCGAAAAGTCCTGGTCT
* * *
32008762 TTAGTGGCGTTTTTTAAAAAAGC-CGCGCGAAAAGTCTTGGTCT
1 TTAGCGGCGTTTTTTTAAAAAGCGC-CGCGAAAAGTCCTGGTCT
32008805 TTAGCGGCG-TTTTTTAAGAAAGCGCCG
1 TTAGCGGCGTTTTTTTAA-AAAGCGCCG
32008832 TTAAAGACTA
Statistics
Matches: 62, Mismatches: 5, Indels: 6
0.85 0.07 0.08
Matches are distributed among these distances:
42 8 0.13
43 53 0.85
44 1 0.02
ACGTcount: A:0.24, C:0.19, G:0.27, T:0.31
Consensus pattern (43 bp):
TTAGCGGCGTTTTTTTAAAAAGCGCCGCGAAAAGTCCTGGTCT
Found at i:32008851 original size:43 final size:40
Alignment explanation
Indices: 32008719--32008869 Score: 126
Period size: 43 Copynumber: 3.5 Consensus size: 40
32008709 ATTGGGCAAA
* *
32008719 TTAGCGGCGTTTTTTTAAAAAGCGCCGCGAAAAGTCCTGGTCT
1 TTAGCGGCGCTTTTTTAAAAAGCG-C-CGAAAAG-ACTGGTCT
* *
32008762 TTAGTGGCG-TTTTTTAAAAAAGCCGCGCGAAAAGTCTTGGTCT
1 TTAGCGGCGCTTTTTT-AAAAAG-CGC-CGAAAAGAC-TGGTCT
* *
32008805 TTAGCGGCG-TTTTTTAAGAAAGCGCCGTTAAAGACTAGGACTT
1 TTAGCGGCGCTTTTTTAA-AAAGCGCCG-AAAAGACT-GGTC-T
32008848 TTAGCGGCGCTTTTTTCAAAAA
1 TTAGCGGCGCTTTTTT-AAAAA
32008870 AACGCCGCCA
Statistics
Matches: 93, Mismatches: 6, Indels: 17
0.80 0.05 0.15
Matches are distributed among these distances:
41 3 0.03
42 20 0.22
43 57 0.61
44 11 0.12
45 2 0.02
ACGTcount: A:0.26, C:0.18, G:0.25, T:0.32
Consensus pattern (40 bp):
TTAGCGGCGCTTTTTTAAAAAGCGCCGAAAAGACTGGTCT
Found at i:32012923 original size:131 final size:131
Alignment explanation
Indices: 32012670--32013002 Score: 417
Period size: 131 Copynumber: 2.6 Consensus size: 131
32012660 AAAAAACCGA
* * * * *
32012670 AACCCAGCAC-AGTAGGGCACGATTCCTCGAATTTCTAGACATCGAACATTGCC-TCATTTT-AG
1 AACCCAGCACGA-TAGGGCACAATTCCACGAATTTCCAAACATCGAACATTGCCTTCGTTTTAAG
* * * *
32012732 AA--TTTAGAGAACGCGAGTGAAATTCTAAAGGGATATTCAATTATTTTGAACAAACGGGAAATT
65 AATTTTTAAAGAACACGAGTGAAATTCCAAAGGAATATTCAATTATTTTGAACAAACGGGAAATT
*
32012795 GT
130 GC
* *
32012797 AACCCAGCACGATAGGGCACTATTCCACGAATTTCCAAACATCGAACATTACCTTCGTTTTGAAG
1 AACCCAGCACGATAGGGCACAATTCCACGAATTTCCAAACATCGAACATTGCCTTCGTTTT-AAG
* * *
32012862 AATTTTTAAAG-ACATGAGTGAAATTCCAAAGGAATATTCGATTATTTTGATCAAACGGGAAATT
65 AATTTTTAAAGAACACGAGTGAAATTCCAAAGGAATATTCAATTATTTTGAACAAACGGGAAATT
32012926 GC
130 GC
* * * * *
32012928 AACCTAACACGATAGGGCACAATTCCACGAATTGCCAAACATCGGACATTGCCTTCGCTTTAAAG
1 AACCCAGCACGATAGGGCACAATTCCACGAATTTCCAAACATCGAACATTGCCTTCG-TTTTAAG
32012993 AATTTTTAAA
65 AATTTTTAAA
32013003 TAATGATAAG
Statistics
Matches: 178, Mismatches: 21, Indels: 10
0.85 0.10 0.05
Matches are distributed among these distances:
127 46 0.26
128 7 0.04
130 4 0.02
131 112 0.63
132 9 0.05
ACGTcount: A:0.35, C:0.20, G:0.17, T:0.27
Consensus pattern (131 bp):
AACCCAGCACGATAGGGCACAATTCCACGAATTTCCAAACATCGAACATTGCCTTCGTTTTAAGA
ATTTTTAAAGAACACGAGTGAAATTCCAAAGGAATATTCAATTATTTTGAACAAACGGGAAATTG
C
Found at i:32015340 original size:89 final size:89
Alignment explanation
Indices: 32015209--32016030 Score: 669
Period size: 87 Copynumber: 9.3 Consensus size: 89
32015199 TGCTCTTCTA
* * * * *
32015209 CAACTTCAGAGAGATAAGA-CTTGCAATTTTCAGCCTGTTACCCTACTTCTTAGGGGGTTAAGGT
1 CAACTTCAGGGAGACAAGATC-TGCAATCTTCAGCCTGTTACCCTACTACTTAGGGGGTTAAGGC
*
32015273 TCACCGTCTTTGATCTGTTCTACTG
65 TCACCGTCTTTGATCTGTTCCACTG
* * * *
32015298 CAACTTCAGGGAGACAAGAT-TAGCTATCTTCAGCCTATTACCCTACTGCTTAGAGGGTTAAGGC
1 CAACTTCAGGGAGACAAGATCT-GCAATCTTCAGCCTGTTACCCTACTACTTAGGGGGTTAAGGC
* *
32015362 TCGCCGTTTTTGATCTGTTCCACTG
65 TCACCGTCTTTGATCTGTTCCACTG
* ** *** * * *
32015387 TAACTTCAAAGAGACAAGATCTATGATCTTCAACCTGTTACCCTACCACTTAGGGGGTTAAGACT
1 CAACTTCAGGGAGACAAGATCTGCAATCTTCAGCCTGTTACCCTACTACTTAGGGGGTTAAGGCT
** ** *
32015452 TGCTTTCTTTGATCTATTCCACTG
66 CACCGTCTTTGATCTGTTCCACTG
* * * * *
32015476 CAACTTCAAGGAGATAAGATCTGCAAT-TT-ATCCTGTTACCCTACTACTTAGGAGGTTAAAGCT
1 CAACTTCAGGGAGACAAGATCTGCAATCTTCAGCCTGTTACCCTACTACTTAGGGGGTTAAGGCT
* *
32015539 CACCGTCTTCGATTTGTTCCACTG
66 CACCGTCTTTGATCTGTTCCACTG
* * * *
32015563 CAACTTCAGGGAGACAAGATCTTCAATCTTTATCCTATTACCCTACTACTTAGGGGGTTAAGGCT
1 CAACTTCAGGGAGACAAGATCTGCAATCTTCAGCCTGTTACCCTACTACTTAGGGGGTTAAGGCT
** * ** * * *
32015628 -TGCTTCTTCAATTTGCTCCACTA
66 CACCGTCTTTGATCTGTTCCACTG
** * * *
32015651 C-TGTTTAGGGAGACAAGATCTGCAATCTTCAGCCTGTTACCTTACTACTTAAGGGGTTAAGGCT
1 CAACTTCAGGGAGACAAGATCTGCAATCTTCAGCCTGTTACCCTACTACTTAGGGGGTTAAGGCT
** * * *
32015715 -TGCTTCTTCGATCT-TCTCCACTA
66 CACCGTCTTTGATCTGT-TCCACTG
** * * * *
32015738 C-TGTTTAGAGAGACAAGATCTTCAATCTTCAGCCTGTTACCCTACTACTTAGGGGGTTAA-GAT
1 CAACTTCAGGGAGACAAGATCTGCAATCTTCAGCCTGTTACCCTACTACTTAGGGGGTTAAGGCT
*** * * * *
32015801 TTGCTTCTTCGATCTGCTCCACTA
66 CACCGTCTTTGATCTGTTCCACTG
** * * * * * **
32015825 C-TGTTTAGGGAGGCAAGATCTACAATCTTCAGTCTGTTACCCTACTACTTAGGGGGATAAAACT
1 CAACTTCAGGGAGACAAGATCTGCAATCTTCAGCCTGTTACCCTACTACTTAGGGGGTTAAGGCT
** ** ** *
32015889 TGCTTTCTTCAATCTGCTCCACTG
66 CACCGTCTTTGATCTGTTCCACTG
** * * * *
32015913 C-TGTTTAGCGAGACAAGATTTACAATCTTCAGCCTGTTACCCTACTACTTAGGGGGTTAAGGCT
1 CAACTTCAGGGAGACAAGATCTGCAATCTTCAGCCTGTTACCCTACTACTTAGGGGGTTAAGGCT
** ** **
32015977 TGCTTTCTTTGATCTACTCCACTG
66 CACCGTCTTTGATCTGTTCCACTG
32016001 CAACTTCAGGGAGACAAGATCTGCAATCTT
1 CAACTTCAGGGAGACAAGATCTGCAATCTT
32016031 TGCCAATGTC
Statistics
Matches: 619, Mismatches: 104, Indels: 20
0.83 0.14 0.03
Matches are distributed among these distances:
86 2 0.00
87 275 0.44
88 122 0.20
89 219 0.35
90 1 0.00
ACGTcount: A:0.24, C:0.24, G:0.19, T:0.33
Consensus pattern (89 bp):
CAACTTCAGGGAGACAAGATCTGCAATCTTCAGCCTGTTACCCTACTACTTAGGGGGTTAAGGCT
CACCGTCTTTGATCTGTTCCACTG
Found at i:32015784 original size:174 final size:176
Alignment explanation
Indices: 32015216--32016030 Score: 755
Period size: 174 Copynumber: 4.6 Consensus size: 176
32015206 CTACAACTTC
* * * * * **
32015216 AGAGAGATAAGA-CTTGCAATTTTCAGCCTGTTACCCTACTTCTTAGGGGGTTAAG-GTTCACCG
1 AGAGAGACAAGATCTT-CAATCTTCAGCCTGTTACCCTACTACTTAGGGGGTTAAGACTT-GCTT
* ** * * * *
32015279 TCTTTGATCTGTTCTACTGCAACTTCAGGGAGACAAGAT-TAGCTATCTTCAGCCTATTACCCTA
64 TCTTCGATCTACTCCACTACAACTTCAGGGAGACAAGATCT-GCAATCTTCAGCCTGTTACCCTA
* * * * * *
32015343 CTGCTT-AGAGGGTTAAGGCTCGCCGTT-TTTGATCTGT-TCCACTG-TAACTTC
128 CTACTTAAG-GGGTTAAAGCTTG-C-TTCTTCGATCT-TCTCCACTGCT--GTTT
* * * *
32015394 AAAGAGACAAGATCTAT-GATCTTCAACCTGTTACCCTACCACTTAGGGGGTTAAGACTTGCTTT
1 AGAGAGACAAGATCT-TCAATCTTCAGCCTGTTACCCTACTACTTAGGGGGTTAAGACTTGCTTT
* * * * * *
32015458 CTTTGATCTATTCCACTGCAACTTCAAGGAGATAAGATCTGCAAT-TT-ATCCTGTTACCCTACT
65 CTTCGATCTACTCCACTACAACTTCAGGGAGACAAGATCTGCAATCTTCAGCCTGTTACCCTACT
** * * ** *
32015521 ACTT-AGGAGGTTAAAGCTCACCGTCTTCGAT-TTGTTCCACTGCAACTTC
130 ACTTAAGG-GGTTAAAGCT-TGCTTCTTCGATCTT-CTCCACTGC-TGTTT
* * * * *
32015570 AGGGAGACAAGATCTTCAATCTTTATCCTATTACCCTACTACTTAGGGGGTTAAGGCTTGC-TTC
1 AGAGAGACAAGATCTTCAATCTTCAGCCTGTTACCCTACTACTTAGGGGGTTAAGACTTGCTTTC
* * * ** * *
32015634 TTCAATTTGCTCCACTAC-TGTTTAGGGAGACAAGATCTGCAATCTTCAGCCTGTTACCTTACTA
66 TTCGATCTACTCCACTACAACTTCAGGGAGACAAGATCTGCAATCTTCAGCCTGTTACCCTACTA
* *
32015698 CTTAAGGGGTTAAGGCTTGCTTCTTCGATCTTCTCCACTACTGTTT
131 CTTAAGGGGTTAAAGCTTGCTTCTTCGATCTTCTCCACTGCTGTTT
*
32015744 AGAGAGACAAGATCTTCAATCTTCAGCCTGTTACCCTACTACTTAGGGGGTTAAGATTTGC-TTC
1 AGAGAGACAAGATCTTCAATCTTCAGCCTGTTACCCTACTACTTAGGGGGTTAAGACTTGCTTTC
* ** * * * *
32015808 TTCGATCTGCTCCACTAC-TGTTTAGGGAGGCAAGATCTACAATCTTCAGTCTGTTACCCTACTA
66 TTCGATCTACTCCACTACAACTTCAGGGAGACAAGATCTGCAATCTTCAGCCTGTTACCCTACTA
* * * * *
32015872 CTTAGGGGGATAAAACTTGCTTTCTTCAATCTGCTCCACTGCTGTTT
131 CTTAAGGGGTTAAAGCTTGC-TTCTTCGATCTTCTCCACTGCTGTTT
* *
32015919 AGCGAGACAAGAT-TTACAATCTTCAGCCTGTTACCCTACTACTTAGGGGGTTAAGGCTTGCTTT
1 AGAGAGACAAGATCTT-CAATCTTCAGCCTGTTACCCTACTACTTAGGGGGTTAAGACTTGCTTT
* *
32015983 CTTTGATCTACTCCACTGCAACTTCAGGGAGACAAGATCTGCAATCTT
65 CTTCGATCTACTCCACTACAACTTCAGGGAGACAAGATCTGCAATCTT
32016031 TGCCAATGTC
Statistics
Matches: 532, Mismatches: 85, Indels: 41
0.81 0.13 0.06
Matches are distributed among these distances:
174 157 0.30
175 115 0.22
176 143 0.27
177 28 0.05
178 83 0.16
179 5 0.01
180 1 0.00
ACGTcount: A:0.24, C:0.24, G:0.19, T:0.33
Consensus pattern (176 bp):
AGAGAGACAAGATCTTCAATCTTCAGCCTGTTACCCTACTACTTAGGGGGTTAAGACTTGCTTTC
TTCGATCTACTCCACTACAACTTCAGGGAGACAAGATCTGCAATCTTCAGCCTGTTACCCTACTA
CTTAAGGGGTTAAAGCTTGCTTCTTCGATCTTCTCCACTGCTGTTT
Found at i:32015800 original size:44 final size:45
Alignment explanation
Indices: 32015578--32015973 Score: 159
Period size: 44 Copynumber: 9.1 Consensus size: 45
32015568 TCAGGGAGAC
* * *
32015578 AAGATCTT-CAATCTTTA-TCCTATTACCCTACTACTTAGGGGGTT
1 AAGATCTTGCAATCTTCAGT-CTGTTACCCTACTACTTAGGGGGAT
* * * * * ** * *
32015622 AAG-GCTTGC-TTCTTCAATTTGCT-CCACTACTGTTTAGGGAGAC
1 AAGATCTTGCAATCTTCAGTCTGTTACC-CTACTACTTAGGGGGAT
* * * *
32015665 AAGATC-TGCAATCTTCAGCCTGTTACCTTACTACTTAAGGGGTT
1 AAGATCTTGCAATCTTCAGTCTGTTACCCTACTACTTAGGGGGAT
* * ** * * *
32015709 AAG-GCTTGC-TTCTTC-GATCT-TCT-CCACTACTGTTTAGAGAGAC
1 AAGATCTTGCAATCTTCAG-TCTGT-TACC-CTACTACTTAGGGGGAT
* *
32015752 AAGATCTT-CAATCTTCAGCCTGTTACCCTACTACTTAGGGGGTT
1 AAGATCTTGCAATCTTCAGTCTGTTACCCTACTACTTAGGGGGAT
* * ** *
32015796 AAGAT-TTGC-TTCTTC-GATCTGCT-CCACTACTGTTTAGGGAGG-C
1 AAGATCTTGCAATCTTCAG-TCTGTTACC-CTACTACTTAGGG-GGAT
*
32015839 AAGATC-TACAATCTTCAGTCTGTTACCCTACTACTTAGGGGGAT
1 AAGATCTTGCAATCTTCAGTCTGTTACCCTACTACTTAGGGGGAT
* ** * * * ** * * *
32015883 AA-AACTTGCTTTCTTCAATCTGCT-CCACTGCTGTTTAGCGAGAC
1 AAGATCTTGCAATCTTCAGTCTGTTACC-CTACTACTTAGGGGGAT
* * *
32015927 AAGAT-TTACAATCTTCAGCCTGTTACCCTACTACTTAGGGGGTT
1 AAGATCTTGCAATCTTCAGTCTGTTACCCTACTACTTAGGGGGAT
32015971 AAG
1 AAG
32015974 GCTTGCTTTC
Statistics
Matches: 242, Mismatches: 82, Indels: 56
0.64 0.22 0.15
Matches are distributed among these distances:
42 9 0.04
43 85 0.35
44 136 0.56
45 12 0.05
ACGTcount: A:0.23, C:0.24, G:0.18, T:0.34
Consensus pattern (45 bp):
AAGATCTTGCAATCTTCAGTCTGTTACCCTACTACTTAGGGGGAT
Found at i:32015943 original size:262 final size:261
Alignment explanation
Indices: 32015230--32016027 Score: 806
Period size: 262 Copynumber: 3.0 Consensus size: 261
32015220 AGATAAGACT
* * * * * * *
32015230 TGCAATTTTCAGCCTGTTACCCTACTTCTTAGGGGGTTAAGGTTCACCGTCTTTGATCTGTTCTA
1 TGCAA-TTT-AGCCTGTTACCCTACTACTTAGGAGGTTAAAGATCACCGTCTTCGATCTGCTCCA
* * * * * *
32015295 CTGCAACTTCAGGGAGACAAGAT-TAGCTATCTTCAGCCTATTACCCTACTGCTTAGAGGGTTAA
64 CTACAACTTCAGGGAGACAAGATCTA-CAATCTTCATCCTATTACCCTACTACTTAGGGGGATAA
** * ** * * ** ** *
32015359 GGCTCGCCGTT-TTTGATCTGTTCCACTGTAAC--TTCAAAGAGACAAGATCTATGATCTTCAAC
128 AACTTG-C-TTCTTCAATCTGCTCCAC--T-ACTGTTTAGCGAGACAAGATCTACAATCTTCAGC
* *
32015421 CTGTTACCCTACCACTTAGGGGGTTAAGACTTGCTTTCTTTGATCTAT-TCCACTGCAACTTCAA
188 CTGTTACCCTACTACTTAGGGGGTTAAGGCTTGCTTTCTTTGATCT-TCTCCACT--AACTTCAA
*
32015485 GGAGATAAGATC
250 GGAGACAAGATC
* * * *
32015497 TGCAATTTATCCTGTTACCCTACTACTTAGGAGGTTAAAGCTCACCGTCTTCGATTTGTTCCACT
1 TGCAATTTAGCCTGTTACCCTACTACTTAGGAGGTTAAAGATCACCGTCTTCGATCTGCTCCACT
* * * * **
32015562 GCAACTTCAGGGAGACAAGATCTTCAATCTTTATCCTATTACCCTACTACTTAGGGGGTTAAGGC
66 ACAACTTCAGGGAGACAAGATCTACAATCTTCATCCTATTACCCTACTACTTAGGGGGATAAAAC
* * *
32015627 TTGCTTCTTCAATTTGCTCCACTACTGTTTAGGGAGACAAGATCTGCAATCTTCAGCCTGTTACC
131 TTGCTTCTTCAATCTGCTCCACTACTGTTTAGCGAGACAAGATCTACAATCTTCAGCCTGTTACC
* * * **
32015692 TTACTACTTAAGGGGTTAAGGCTTGC-TTCTTCGATCTTCTCCACT-ACTGTTTAGAGAGACAAG
196 CTACTACTTAGGGGGTTAAGGCTTGCTTTCTTTGATCTTCTCCACTAACT-TCAAG-GAGACAAG
32015755 ATC
259 ATC
* * *** *
32015758 TTCAATCTTCAGCCTGTTACCCTACTACTTAGGGGGTT-AAGATTTGCTTCTTCGATCTGCTCCA
1 TGCAAT-TT-AGCCTGTTACCCTACTACTTAGGAGGTTAAAGATCACCGTCTTCGATCTGCTCCA
** * * *
32015822 CTAC-TGTTTAGGGAGGCAAGATCTACAATCTTCAGT-CTGTTACCCTACTACTTAGGGGGATAA
64 CTACAACTTCAGGGAGACAAGATCTACAATCTTCA-TCCTATTACCCTACTACTTAGGGGGATAA
* *
32015885 AACTTGCTTTCTTCAATCTGCTCCACTGCTGTTTAGCGAGACAAGATTTACAATCTTCAGCCTGT
128 AACTTGC-TTCTTCAATCTGCTCCACTACTGTTTAGCGAGACAAGATCTACAATCTTCAGCCTGT
* *
32015950 TACCCTACTACTTAGGGGGTTAAGGCTTGCTTTCTTTGATCTACTCCACTGCAACTTCAGGGAGA
192 TACCCTACTACTTAGGGGGTTAAGGCTTGCTTTCTTTGATCTTCTCCACT--AACTTCAAGGAGA
32016015 CAAGATC
255 CAAGATC
32016022 TGCAAT
1 TGCAAT
32016028 CTTTGCCAAT
Statistics
Matches: 448, Mismatches: 68, Indels: 33
0.82 0.12 0.06
Matches are distributed among these distances:
259 3 0.01
260 3 0.01
261 72 0.16
262 122 0.27
263 98 0.22
264 28 0.06
265 110 0.25
266 7 0.02
267 5 0.01
ACGTcount: A:0.24, C:0.24, G:0.19, T:0.34
Consensus pattern (261 bp):
TGCAATTTAGCCTGTTACCCTACTACTTAGGAGGTTAAAGATCACCGTCTTCGATCTGCTCCACT
ACAACTTCAGGGAGACAAGATCTACAATCTTCATCCTATTACCCTACTACTTAGGGGGATAAAAC
TTGCTTCTTCAATCTGCTCCACTACTGTTTAGCGAGACAAGATCTACAATCTTCAGCCTGTTACC
CTACTACTTAGGGGGTTAAGGCTTGCTTTCTTTGATCTTCTCCACTAACTTCAAGGAGACAAGAT
C
Found at i:32016197 original size:64 final size:64
Alignment explanation
Indices: 32016096--32016219 Score: 203
Period size: 64 Copynumber: 1.9 Consensus size: 64
32016086 ATGCCTATGG
* *
32016096 TTATGCCAAATAATTAGGATACCATGATCGAAATGAATCAAATGCTCCTAACTAGATGTGATGC
1 TTATGCCAAATAACTAGGATACCATGATCGAAATGAATCAAACGCTCCTAACTAGATGTGATGC
* * *
32016160 TTATGTCAAATAACTAGGATGCTATGATCGAAATGAATCAAACGCTCCTAACTAGATGTG
1 TTATGCCAAATAACTAGGATACCATGATCGAAATGAATCAAACGCTCCTAACTAGATGTG
32016220 TTATGAATGA
Statistics
Matches: 55, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
64 55 1.00
ACGTcount: A:0.37, C:0.17, G:0.18, T:0.28
Consensus pattern (64 bp):
TTATGCCAAATAACTAGGATACCATGATCGAAATGAATCAAACGCTCCTAACTAGATGTGATGC
Found at i:32027744 original size:127 final size:128
Alignment explanation
Indices: 32027585--32027896 Score: 348
Period size: 131 Copynumber: 2.4 Consensus size: 128
32027575 AAAAAACCAA
* * *
32027585 AACCCAGCAC-AGTAAGGCACGATT-CCTCGAATTTCTAGACATCGAACATTGCCTCATTTT-AG
1 AACCCAGCACGA-TAGGGCACGATTCCCT-GAATTTCCAAACATCGAACATTGCCTCATTTTAAG
* * * * *
32027647 AA-TTTAGAGAACGCGAGTGAAATT-CTAAAGGGATATTCGATTATTTTGAACAAACATG-AAAT
64 AATTTTAAAG-ACACGAATGAAATTCCT-AAGGAATATTCGATTATTTTGAACAAAC-GGAAAAT
*
32027709 TGC
126 TAC
* * *
32027712 AACCCAGCACGATAGGGCACGATTCCCTGAATTGCCAAACATCGAACATTACCTTCGTTTTGAAG
1 AACCCAGCACGATAGGGCACGATTCCCTGAATTTCCAAACATCGAACATTGCC-TCATTTT-AAG
* * *
32027777 AATTTTTAAAGACATGAATGAAATTCCTAAGGAATATTTGATTATTTTGATCAAACGGAAAATTA
64 AA-TTTTAAAGACACGAATGAAATTCCTAAGGAATATTCGATTATTTTGAACAAACGGAAAATTA
32027842 C
128 C
* * *
32027843 AACCCAGCACGATAGGACACGATTCCCTAAATTTCCAAACATCGGACATTGCCT
1 AACCCAGCACGATAGGGCACGATTCCCTGAATTTCCAAACATCGAACATTGCCT
32027897 TCGCTTTAAA
Statistics
Matches: 156, Mismatches: 20, Indels: 15
0.82 0.10 0.08
Matches are distributed among these distances:
127 42 0.27
128 10 0.06
130 6 0.04
131 90 0.58
132 8 0.05
ACGTcount: A:0.36, C:0.21, G:0.17, T:0.27
Consensus pattern (128 bp):
AACCCAGCACGATAGGGCACGATTCCCTGAATTTCCAAACATCGAACATTGCCTCATTTTAAGAA
TTTTAAAGACACGAATGAAATTCCTAAGGAATATTCGATTATTTTGAACAAACGGAAAATTAC
Found at i:32027846 original size:131 final size:131
Alignment explanation
Indices: 32027664--32027917 Score: 368
Period size: 131 Copynumber: 1.9 Consensus size: 131
32027654 AGAACGCGAG
* * * *
32027664 TGAAATTCTAAAGGGATATTCGATTATTTTGAACAAACATGAAATTGCAACCCAGCACGATAGGG
1 TGAAATTCTAAAGGAATATTCGATTATTTTGAACAAACAGGAAATTACAACCCAGCACGATAGGA
* * *
32027729 CACGATTCCCTGAATTGCCAAACATCGAACATTACCTTCGTTTTGAAGAATTTTTAAAGACATGA
66 CACGATTCCCTAAATTGCCAAACATCGAACATTACCTTCGCTTTAAAGAATTTTTAAAGACATGA
32027794 A
131 A
* *
32027795 TGAAATTCCT-AAGGAATATTTGATTATTTTGATCAAAC-GGAAAATTACAACCCAGCACGATAG
1 TGAAATT-CTAAAGGAATATTCGATTATTTTGAACAAACAGG-AAATTACAACCCAGCACGATAG
* * *
32027858 GACACGATTCCCTAAATTTCCAAACATCGGACATTGCCTTCGCTTTAAAGAATTTTTAAA
64 GACACGATTCCCTAAATTGCCAAACATCGAACATTACCTTCGCTTTAAAGAATTTTTAAA
32027918 TAATGATAAG
Statistics
Matches: 109, Mismatches: 12, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
130 1 0.01
131 106 0.97
132 2 0.02
ACGTcount: A:0.37, C:0.19, G:0.15, T:0.29
Consensus pattern (131 bp):
TGAAATTCTAAAGGAATATTCGATTATTTTGAACAAACAGGAAATTACAACCCAGCACGATAGGA
CACGATTCCCTAAATTGCCAAACATCGAACATTACCTTCGCTTTAAAGAATTTTTAAAGACATGA
A
Found at i:32031653 original size:108 final size:108
Alignment explanation
Indices: 32031488--32031717 Score: 250
Period size: 108 Copynumber: 2.1 Consensus size: 108
32031478 GTAAGATTCT
* * * * *
32031488 AAAAATCTTATAAGTATATGGCCACGGTCTTAAATCGATGAACCAGAAGATTCTGAAAGTATTTT
1 AAAAATCTTATAAGTAAAAGGCCACGATCTTAAATCGATGAACCAGAAGATTCTGAAAATATTAT
* * *
32031553 AAGTATATGGTCGCAATCTTAAATCGGCAAACCATAAAATTTC
66 AAGTAAAAGGTCACAATCTTAAATCGGCAAACCATAAAATTTC
* * *
32031596 GAAAATCTTATAAGTAAAAGGTCACGATCTTAAATCGGA-GAACC-GTAAGACTT-TGAAAATCT
1 AAAAATCTTATAAGTAAAAGGCCACGATCTTAAATC-GATGAACCAG-AAGA-TTCTGAAAATAT
* * * * * * *
32031658 TATAAGTAAAAGTTCACGATCTTAAATCTGCGAACCTTAAGATTTT
63 TATAAGTAAAAGGTCACAATCTTAAATCGGCAAACCATAAAATTTC
32031704 AAAAATCTTATAAG
1 AAAAATCTTATAAG
32031718 GTAGATTTTT
Statistics
Matches: 100, Mismatches: 19, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
107 1 0.01
108 95 0.95
109 4 0.04
ACGTcount: A:0.40, C:0.15, G:0.15, T:0.30
Consensus pattern (108 bp):
AAAAATCTTATAAGTAAAAGGCCACGATCTTAAATCGATGAACCAGAAGATTCTGAAAATATTAT
AAGTAAAAGGTCACAATCTTAAATCGGCAAACCATAAAATTTC
Found at i:32031666 original size:54 final size:53
Alignment explanation
Indices: 32031460--32031717 Score: 225
Period size: 54 Copynumber: 4.8 Consensus size: 53
32031450 GATGGTCGTA
* * * * * * *
32031460 ATCTTAAACCGGAAAATCGTAAGATTCTAAAAATCTTATAAGTATATGGCCACG
1 ATCTTAAATCGGAGAACCGTAAGATT-TGAAAATCTTATAAGTAAAAGGTCACG
* * * * * * * *
32031514 GTCTTAAATC-GATGAACCAG-AAGATTCTGAAAGTATTTTAAGTATATGGTCGCA
1 ATCTTAAATCGGA-GAACC-GTAAGATT-TGAAAATCTTATAAGTAAAAGGTCACG
* *
32031568 ATCTTAAATCGGCA-AACCATAAAATTTCGAAAATCTTATAAGTAAAAGGTCACG
1 ATCTTAAATCGG-AGAACCGTAAGATTT-GAAAATCTTATAAGTAAAAGGTCACG
*
32031622 ATCTTAAATCGGAGAACCGTAAGACTTTGAAAATCTTATAAGTAAAAGTTCACG
1 ATCTTAAATCGGAGAACCGTAAGA-TTTGAAAATCTTATAAGTAAAAGGTCACG
* * * *
32031676 ATCTTAAATCTGCGAACCTTAAGATTTTAAAAATCTTATAAG
1 ATCTTAAATCGGAGAACCGTAAGA-TTTGAAAATCTTATAAG
32031718 GTAGATTTTT
Statistics
Matches: 167, Mismatches: 29, Indels: 16
0.79 0.14 0.08
Matches are distributed among these distances:
53 4 0.02
54 157 0.94
55 5 0.03
56 1 0.01
ACGTcount: A:0.40, C:0.15, G:0.15, T:0.29
Consensus pattern (53 bp):
ATCTTAAATCGGAGAACCGTAAGATTTGAAAATCTTATAAGTAAAAGGTCACG
Found at i:32031879 original size:12 final size:13
Alignment explanation
Indices: 32031855--32031885 Score: 55
Period size: 12 Copynumber: 2.5 Consensus size: 13
32031845 TATACATTCT
32031855 AATTAATTGAGAA
1 AATTAATTGAGAA
32031868 AATTAA-TGAGAA
1 AATTAATTGAGAA
32031880 AATTAA
1 AATTAA
32031886 GCCTTGCGAT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
12 12 0.67
13 6 0.33
ACGTcount: A:0.58, C:0.00, G:0.13, T:0.29
Consensus pattern (13 bp):
AATTAATTGAGAA
Found at i:32032274 original size:16 final size:17
Alignment explanation
Indices: 32032244--32032276 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
32032234 TAAATTTACC
*
32032244 TTTTATAATTTGTAAAA
1 TTTTATAATTAGTAAAA
32032261 TTTTA-AATTAGTAAAA
1 TTTTATAATTAGTAAAA
32032277 GTAAAATTAC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 10 0.67
17 5 0.33
ACGTcount: A:0.45, C:0.00, G:0.06, T:0.48
Consensus pattern (17 bp):
TTTTATAATTAGTAAAA
Found at i:32032335 original size:22 final size:23
Alignment explanation
Indices: 32032310--32032371 Score: 72
Period size: 23 Copynumber: 2.7 Consensus size: 23
32032300 TAAAAATGAT
* * *
32032310 AAAATTTTAATTTAATTCT-TTA
1 AAAATTATAATTTAATTATAGTA
* *
32032332 AAAATTATATTTTTATTATAGTA
1 AAAATTATAATTTAATTATAGTA
32032355 AAAATTATAATTTAATT
1 AAAATTATAATTTAATT
32032372 TCGACCACTC
Statistics
Matches: 32, Mismatches: 7, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
22 15 0.47
23 17 0.53
ACGTcount: A:0.45, C:0.02, G:0.02, T:0.52
Consensus pattern (23 bp):
AAAATTATAATTTAATTATAGTA
Found at i:32038452 original size:21 final size:22
Alignment explanation
Indices: 32038423--32038469 Score: 78
Period size: 21 Copynumber: 2.2 Consensus size: 22
32038413 CAGAAGGAGT
*
32038423 GAGTAGTACTTCGCAGCAGGTG
1 GAGTAGTACTCCGCAGCAGGTG
32038445 GAGT-GTACTCCGCAGCAGGTG
1 GAGTAGTACTCCGCAGCAGGTG
32038466 GAGT
1 GAGT
32038470 TTGAGCAGAG
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
21 20 0.83
22 4 0.17
ACGTcount: A:0.21, C:0.19, G:0.38, T:0.21
Consensus pattern (22 bp):
GAGTAGTACTCCGCAGCAGGTG
Found at i:32043827 original size:34 final size:34
Alignment explanation
Indices: 32043781--32043852 Score: 92
Period size: 34 Copynumber: 2.1 Consensus size: 34
32043771 ATAGAAGTAA
* *
32043781 ATTATTTCGTGTTT-AACGTTGATACTATCGATTT
1 ATTATTTCGTGTTTGAA-ATTGATACTATCGATCT
* *
32043815 ATTATTTTGTGTTTGAAATTGATGCTATCGATCT
1 ATTATTTCGTGTTTGAAATTGATACTATCGATCT
32043849 ATTA
1 ATTA
32043853 GCGGTAAAAT
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
34 31 0.94
35 2 0.06
ACGTcount: A:0.25, C:0.10, G:0.15, T:0.50
Consensus pattern (34 bp):
ATTATTTCGTGTTTGAAATTGATACTATCGATCT
Found at i:32047620 original size:35 final size:35
Alignment explanation
Indices: 32047574--32047644 Score: 133
Period size: 35 Copynumber: 2.0 Consensus size: 35
32047564 TTTCAGTTTG
*
32047574 AACCCAATTCAACATTACCCTTAGATACTTGTAGA
1 AACCCAATTCAACATTACCCTTAAATACTTGTAGA
32047609 AACCCAATTCAACATTACCCTTAAATACTTGTAGA
1 AACCCAATTCAACATTACCCTTAAATACTTGTAGA
32047644 A
1 A
32047645 CTAAGCCTAG
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 35 1.00
ACGTcount: A:0.39, C:0.25, G:0.07, T:0.28
Consensus pattern (35 bp):
AACCCAATTCAACATTACCCTTAAATACTTGTAGA
Found at i:32050986 original size:23 final size:23
Alignment explanation
Indices: 32050935--32050986 Score: 54
Period size: 22 Copynumber: 2.3 Consensus size: 23
32050925 CAGATTAAAC
* *
32050935 CACAATCCTTAGCCCAAACAAAT
1 CACAAACCCTAGCCCAAACAAAT
*
32050958 CA-AAACCCTAGCCCAACCCAAA-
1 CACAAACCCTAGCCCAA-ACAAAT
32050980 CACAAAC
1 CACAAAC
32050987 AAAAGAAAGA
Statistics
Matches: 24, Mismatches: 3, Indels: 4
0.77 0.10 0.13
Matches are distributed among these distances:
22 14 0.58
23 10 0.42
ACGTcount: A:0.46, C:0.40, G:0.04, T:0.10
Consensus pattern (23 bp):
CACAAACCCTAGCCCAAACAAAT
Found at i:32052309 original size:3 final size:3
Alignment explanation
Indices: 32052301--32052339 Score: 78
Period size: 3 Copynumber: 13.0 Consensus size: 3
32052291 TGTATTTCTA
32052301 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
32052340 ATAGTAGTGT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 36 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:32063927 original size:6 final size:5
Alignment explanation
Indices: 32063900--32063933 Score: 50
Period size: 5 Copynumber: 6.4 Consensus size: 5
32063890 ATATATATAT
32063900 AAATA AAATA AAATA AAATA ATAATA ATAATA AA
1 AAATA AAATA AAATA AAATA A-AATA A-AATA AA
32063934 GAAAAGAAAA
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
5 17 0.61
6 11 0.39
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (5 bp):
AAATA
Found at i:32064874 original size:44 final size:43
Alignment explanation
Indices: 32064823--32065061 Score: 164
Period size: 44 Copynumber: 5.3 Consensus size: 43
32064813 GATCTTATCT
*
32064823 CCCTAAGCAGTAGGGAAACAGATCAAAGATGATAGGCTTTAAC
1 CCCTAAGCAGTAGGGAAACAGATCGAAGATGATAGGCTTTAAC
*
32064866 CCCTTAAGCAGTAGGGAAACAGACCGAAG--GCA-ACGAGCTTTAACC
1 CCC-TAAGCAGTAGGGAAACAGATCGAAGATG-ATA-G-GCTTTAA-C
* * * * * * *
32064911 CCCTAAGCAGTAGGGTAACA-AGCTGAAGTTTATA-GATCTCATC
1 CCCTAAGCAGTAGGGAAACAGATC-GAAGATGATAGGCT-TTAAC
* * *
32064954 ACCCTAAGCAGTAGGGAAACAGATCGAAGACGAATTTACAGATCTTAACC
1 -CCCTAAGCAGTAGGGAAACAGATCGAAGATG-A--TA-GGCT-TTAA-C
* * * * *
32065004 CCCTAAGCAGTAGGGAAACATATCAAAGAGGATGGGCCTTAAC
1 CCCTAAGCAGTAGGGAAACAGATCGAAGATGATAGGCTTTAAC
32065047 CCCTAAGCAGTAGGG
1 CCCTAAGCAGTAGGG
32065062 TAAAAGGTTG
Statistics
Matches: 156, Mismatches: 22, Indels: 36
0.73 0.10 0.17
Matches are distributed among these distances:
42 2 0.01
43 26 0.17
44 79 0.51
45 9 0.06
46 2 0.01
47 2 0.01
48 1 0.01
49 34 0.22
50 1 0.01
ACGTcount: A:0.36, C:0.22, G:0.23, T:0.18
Consensus pattern (43 bp):
CCCTAAGCAGTAGGGAAACAGATCGAAGATGATAGGCTTTAAC
Found at i:32070843 original size:86 final size:87
Alignment explanation
Indices: 32070693--32070867 Score: 273
Period size: 86 Copynumber: 2.0 Consensus size: 87
32070683 GTTTTTTGTC
32070693 TTAAGAATGTATTGACCCTTTTGACGCGAAGAGGGATGACAACCCAAGCACCCCACCCCAGTTAC
1 TTAAGAATGTATTGACCCTTTTGACGCGAAGAGGGATGACAACCCAAGCACCCCACCCCAGTTAC
*
32070758 TCAGCCCAACACACTCTT-ATT
66 TCAACCCAACACACTCTTAATT
* * * * *
32070779 TTAAGAATTTTTTGGCCCTTTTGACGCGAAGTA-GGATGACAACCCAAGCACCCTACCCCGGTTA
1 TTAAGAATGTATTGACCCTTTTGACGCGAAG-AGGGATGACAACCCAAGCACCCCACCCCAGTTA
32070843 CTCAACCCAACACACTCTTAATT
65 CTCAACCCAACACACTCTTAATT
32070866 TT
1 TT
32070868 TTTTTGTTTA
Statistics
Matches: 81, Mismatches: 6, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
86 75 0.93
87 6 0.07
ACGTcount: A:0.29, C:0.30, G:0.15, T:0.25
Consensus pattern (87 bp):
TTAAGAATGTATTGACCCTTTTGACGCGAAGAGGGATGACAACCCAAGCACCCCACCCCAGTTAC
TCAACCCAACACACTCTTAATT
Found at i:32073297 original size:25 final size:23
Alignment explanation
Indices: 32073253--32073309 Score: 71
Period size: 25 Copynumber: 2.4 Consensus size: 23
32073243 AATAAGTGAA
* *
32073253 TAAATAAAAATTAATAAAAAGTT
1 TAAATAATAATTAAAAAAAAGTT
32073276 TAAATAATAATATAAAAGAAAAGTT
1 TAAATAATAAT-TAAAA-AAAAGTT
32073301 TAAA-AATAA
1 TAAATAATAA
32073310 GCAAATAAAT
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
23 10 0.33
24 9 0.30
25 11 0.37
ACGTcount: A:0.67, C:0.00, G:0.05, T:0.28
Consensus pattern (23 bp):
TAAATAATAATTAAAAAAAAGTT
Found at i:32073358 original size:3 final size:3
Alignment explanation
Indices: 32073350--32073393 Score: 52
Period size: 3 Copynumber: 13.7 Consensus size: 3
32073340 AATAAAAGGG
*
32073350 TAA TAA TAA TAA AAA GGTAA TAAA TAA TAA TAA TAA TAA TAA TA
1 TAA TAA TAA TAA TAA --TAA T-AA TAA TAA TAA TAA TAA TAA TA
32073394 TGTAAGTAAA
Statistics
Matches: 36, Mismatches: 2, Indels: 6
0.82 0.05 0.14
Matches are distributed among these distances:
3 31 0.86
4 3 0.08
5 2 0.06
ACGTcount: A:0.66, C:0.00, G:0.05, T:0.30
Consensus pattern (3 bp):
TAA
Found at i:32073364 original size:18 final size:17
Alignment explanation
Indices: 32073335--32073393 Score: 70
Period size: 17 Copynumber: 3.6 Consensus size: 17
32073325 AAAAAGATAA
*
32073335 AATAA-AATAAAAGGGT
1 AATAATAATAAAAAGGT
32073351 AATAATAATAAAAAGGT
1 AATAATAATAAAAAGGT
*
32073368 AATAAATAATAATAA--T
1 AAT-AATAATAAAAAGGT
32073384 AATAATAATA
1 AATAATAATA
32073394 TGTAAGTAAA
Statistics
Matches: 39, Mismatches: 2, Indels: 5
0.85 0.04 0.11
Matches are distributed among these distances:
15 7 0.18
16 9 0.23
17 13 0.33
18 10 0.26
ACGTcount: A:0.66, C:0.00, G:0.08, T:0.25
Consensus pattern (17 bp):
AATAATAATAAAAAGGT
Found at i:32073474 original size:3 final size:3
Alignment explanation
Indices: 32073455--32073845 Score: 197
Period size: 3 Copynumber: 131.7 Consensus size: 3
32073445 TTAATTAGTT
* * * * *
32073455 TAA TAA T-A TGA TGA TAA TAA TAG TAA TAA T-A CAA TAA TAA TAA -AG
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
* ** **
32073500 TAGA AAA TAA TAA TAA TAA TAA TAA TAA TAA T-A TGT TAA TAA GGA
1 TA-A TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
* * * * *
32073545 TAA TAG GAA TAA TAA TAA TAG TAA TAA AAA TAA -AA AAA TAGA -AA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA-A TAA
* * * * * *
32073589 TGA TAA TAA TAA TAT TGA TAA TAAA TAA TAA TAG TAA AAA TAA CAA
1 TAA TAA TAA TAA TAA TAA TAA T-AA TAA TAA TAA TAA TAA TAA TAA
* *
32073635 TAA TAA TAA TAGA AAA TAA -AA -AA TAA -AA -AA TGAA GAA TAA TAA
1 TAA TAA TAA TA-A TAA TAA TAA TAA TAA TAA TAA T-AA TAA TAA TAA
** * * * *
32073678 TACA TTAA TAA TAA TAA -AA TCGG GAA TAA TAA TAA CAA CAA CAA T-A
1 TA-A -TAA TAA TAA TAA TAA T-AA TAA TAA TAA TAA TAA TAA TAA TAA
* *
32073724 TAAA TAA TAA T-A TAA -AA -AA TAA TAG TAA TAA TAA T-A TAG TAA
1 T-AA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
* * * *
32073766 TAA TAA TAA TAGA AAA TAA TAG TAA TAG TGAA -AA TAA TAA TAA TAG
1 TAA TAA TAA TA-A TAA TAA TAA TAA TAA T-AA TAA TAA TAA TAA TAA
**
32073812 TAA TAA TGAA TTAA TTAA TTT TAA TAA TAA -AA TA
1 TAA TAA T-AA -TAA -TAA TAA TAA TAA TAA TAA TA
32073846 GCAAAATAAC
Statistics
Matches: 295, Mismatches: 65, Indels: 56
0.71 0.16 0.13
Matches are distributed among these distances:
2 33 0.11
3 235 0.80
4 24 0.08
5 3 0.01
ACGTcount: A:0.62, C:0.02, G:0.07, T:0.29
Consensus pattern (3 bp):
TAA
Found at i:32074555 original size:12 final size:11
Alignment explanation
Indices: 32074527--32074553 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
32074517 AAAATGTGAG
32074527 TTTTTGACTCT
1 TTTTTGACTCT
32074538 TTTTTGACTCT
1 TTTTTGACTCT
32074549 TTTTT
1 TTTTT
32074554 TGTTTATTAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.07, C:0.15, G:0.07, T:0.70
Consensus pattern (11 bp):
TTTTTGACTCT
Found at i:32091516 original size:96 final size:96
Alignment explanation
Indices: 32091400--32091588 Score: 369
Period size: 96 Copynumber: 2.0 Consensus size: 96
32091390 CCCATCAGAT
*
32091400 TAAAAATTTTCATAGGGTTGCAGGGTCGTCCTAATCGACTGTGGGTCAACCGTAGGGTCAGTAAA
1 TAAAAATTTTCATAAGGTTGCAGGGTCGTCCTAATCGACTGTGGGTCAACCGTAGGGTCAGTAAA
32091465 GGCTAACTAAACCCTGAAACCATGTGTAGAC
66 GGCTAACTAAACCCTGAAACCATGTGTAGAC
32091496 TAAAAATTTTCATAAGGTTGCAGGGTCGTCCTAATCGACTGTGGGTCAACCGTAGGGTCAGTAAA
1 TAAAAATTTTCATAAGGTTGCAGGGTCGTCCTAATCGACTGTGGGTCAACCGTAGGGTCAGTAAA
32091561 GGCTAACTAAACCCTGAAACCATGTGTA
66 GGCTAACTAAACCCTGAAACCATGTGTA
32091589 TTGTTAGACT
Statistics
Matches: 92, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
96 92 1.00
ACGTcount: A:0.31, C:0.20, G:0.24, T:0.25
Consensus pattern (96 bp):
TAAAAATTTTCATAAGGTTGCAGGGTCGTCCTAATCGACTGTGGGTCAACCGTAGGGTCAGTAAA
GGCTAACTAAACCCTGAAACCATGTGTAGAC
Found at i:32092251 original size:17 final size:18
Alignment explanation
Indices: 32092229--32092308 Score: 103
Period size: 19 Copynumber: 4.4 Consensus size: 18
32092219 ATGGAAATAT
*
32092229 AATCTTGA-AGGATATGC
1 AATCTTGATATGATATGC
32092246 AATCTTAGATATGATATGC
1 AATCTT-GATATGATATGC
32092265 AATCTTTGATATGATA--C
1 AATC-TTGATATGATATGC
32092282 AATCTTTGATATGATATGC
1 AATC-TTGATATGATATGC
32092301 AATCTTGA
1 AATCTTGA
32092309 AGATATGATC
Statistics
Matches: 57, Mismatches: 1, Indels: 9
0.85 0.01 0.13
Matches are distributed among these distances:
17 23 0.40
18 6 0.11
19 26 0.46
20 2 0.04
ACGTcount: A:0.35, C:0.11, G:0.16, T:0.38
Consensus pattern (18 bp):
AATCTTGATATGATATGC
Found at i:32092263 original size:19 final size:19
Alignment explanation
Indices: 32092239--32092328 Score: 112
Period size: 19 Copynumber: 4.7 Consensus size: 19
32092229 AATCTTGAAG
32092239 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
*
32092258 GATATGCAATCTTTGATAT
1 GATATGCAATCTTAGATAT
*
32092277 GATA--CAATCTTTGATAT
1 GATATGCAATCTTAGATAT
32092294 GATATGCAATCTTGAAGATAT
1 GATATGCAATCTT--AGATAT
*
32092315 GATCTTGCAATCTT
1 GAT-ATGCAATCTT
32092329 GGAGATTTAA
Statistics
Matches: 63, Mismatches: 3, Indels: 7
0.86 0.04 0.10
Matches are distributed among these distances:
17 17 0.27
19 29 0.46
21 8 0.13
22 9 0.14
ACGTcount: A:0.33, C:0.12, G:0.16, T:0.39
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:32092269 original size:36 final size:35
Alignment explanation
Indices: 32092229--32092315 Score: 115
Period size: 36 Copynumber: 2.4 Consensus size: 35
32092219 ATGGAAATAT
32092229 AATCTTGAAGGATATGCAATCTTAGATATGATATGC
1 AATCTTGAA-GATATGCAATCTTAGATATGATATGC
*
32092265 AATCTTTGATATGATA--CAATCTTTGATATGATATGC
1 AATC-TTGA-A-GATATGCAATCTTAGATATGATATGC
32092301 AATCTTGAAGATATG
1 AATCTTGAAGATATG
32092316 ATCTTGCAAT
Statistics
Matches: 45, Mismatches: 2, Indels: 9
0.80 0.04 0.16
Matches are distributed among these distances:
33 4 0.09
34 1 0.02
35 4 0.09
36 27 0.60
37 4 0.09
38 5 0.11
ACGTcount: A:0.36, C:0.10, G:0.17, T:0.37
Consensus pattern (35 bp):
AATCTTGAAGATATGCAATCTTAGATATGATATGC
Found at i:32095956 original size:14 final size:14
Alignment explanation
Indices: 32095937--32095966 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
32095927 TAATTTCAAG
32095937 ATAGATTAACGCAT
1 ATAGATTAACGCAT
*
32095951 ATAGATTCACGCAT
1 ATAGATTAACGCAT
32095965 AT
1 AT
32095967 TTATAATATA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.40, C:0.17, G:0.13, T:0.30
Consensus pattern (14 bp):
ATAGATTAACGCAT
Found at i:32104009 original size:43 final size:43
Alignment explanation
Indices: 32103756--32103996 Score: 410
Period size: 43 Copynumber: 5.6 Consensus size: 43
32103746 GCTGGTATTA
*
32103756 TATTCGGGCCTTCGTGCCTAACAGGCTTCGTGCCGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
* *
32103799 TATTCGGGCCTTCGTGCCTAGAAGGCTTCGTGCCAGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
* *
32103842 TATTCGGGCCTTCGTGCCTAGCAAGCTTCATGCCGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
*
32103885 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGTCGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
*
32103928 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTACCGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
*
32103971 TATTCGGGCCGTCGTGCCTAGCAGGC
1 TATTCGGGCCTTCGTGCCTAGCAGGC
32103997 GTAATGCAGG
Statistics
Matches: 185, Mismatches: 13, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
43 185 1.00
ACGTcount: A:0.12, C:0.25, G:0.33, T:0.30
Consensus pattern (43 bp):
TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
Found at i:32107639 original size:14 final size:14
Alignment explanation
Indices: 32107620--32107649 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
32107610 TATTTTCAAG
32107620 ATAGATTAACGCAT
1 ATAGATTAACGCAT
*
32107634 ATAGATTCACGCAT
1 ATAGATTAACGCAT
32107648 AT
1 AT
32107650 TTATAAAATA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.40, C:0.17, G:0.13, T:0.30
Consensus pattern (14 bp):
ATAGATTAACGCAT
Found at i:32110620 original size:14 final size:14
Alignment explanation
Indices: 32110596--32110630 Score: 54
Period size: 14 Copynumber: 2.6 Consensus size: 14
32110586 TTAAATATTT
32110596 ATAAT-GTTTAATC
1 ATAATGGTTTAATC
*
32110609 ATAATGGTTTAATT
1 ATAATGGTTTAATC
32110623 ATAATGGT
1 ATAATGGT
32110631 ATATTCATCA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
13 5 0.25
14 15 0.75
ACGTcount: A:0.37, C:0.03, G:0.14, T:0.46
Consensus pattern (14 bp):
ATAATGGTTTAATC
Found at i:32111411 original size:43 final size:43
Alignment explanation
Indices: 32111332--32111545 Score: 179
Period size: 43 Copynumber: 5.0 Consensus size: 43
32111322 TAAAACTAGT
* * *
32111332 GACGTTTTTGAGAAAAGCG-C-ATAAAGATCATGTTCTTTAGC
1 GACGTTTTAGAGAAAAGCGTCGCTAAAGGTCATGTTCTTTAGC
* *
32111373 GACGTTTTAGAGAAAAACGTTGCTAAAGGTCATGTTCTTTAGC
1 GACGTTTTAGAGAAAAGCGTCGCTAAAGGTCATGTTCTTTAGC
* * * *
32111416 GGCGTTTGTA-TGAAAAGCATCGCTAAAGGTC-TCGTTCTTTTGC
1 GACGTTT-TAGAGAAAAGCGTCGCTAAAGGTCAT-GTTCTTTAGC
* * * * *
32111459 GTCGTTTTTGAGAAAAGTGCCGCTAAAGGTCACGTTCTTTAGC
1 GACGTTTTAGAGAAAAGCGTCGCTAAAGGTCATGTTCTTTAGC
* * * * *
32111502 GGCATTTGT-GTA-AAAAGTGCCGCTAAAGGTCACGTTCTTTAGC
1 GACGTTT-TAG-AGAAAAGCGTCGCTAAAGGTCATGTTCTTTAGC
32111545 G
1 G
32111546 GTGCTTTCTC
Statistics
Matches: 144, Mismatches: 21, Indels: 14
0.80 0.12 0.08
Matches are distributed among these distances:
41 17 0.12
42 2 0.01
43 121 0.84
44 4 0.03
ACGTcount: A:0.26, C:0.17, G:0.25, T:0.32
Consensus pattern (43 bp):
GACGTTTTAGAGAAAAGCGTCGCTAAAGGTCATGTTCTTTAGC
Found at i:32111465 original size:86 final size:86
Alignment explanation
Indices: 32111353--32111545 Score: 233
Period size: 86 Copynumber: 2.2 Consensus size: 86
32111343 GAAAAGCGCA
* * ** *
32111353 TAAAGATCATGTTCTTTAGCGACGTTTTAGAGAAAAACGTTGCTAAAGGTCATGTTCTTTAGCGG
1 TAAAGGTCACGTTCTTTAGCGACGTTTTAGAGAAAAACGCCGCTAAAGGTCACGTTCTTTAGCGG
* * *
32111418 CGTTTGTATGAAAAGCATCGC
66 CATTTGTATAAAAAGCACCGC
* * * * **
32111439 TAAAGGTCTCGTTCTTTTGCGTCGTTTTTGAGAAAAGTGCCGCTAAAGGTCACGTTCTTTAGCGG
1 TAAAGGTCACGTTCTTTAGCGACGTTTTAGAGAAAAACGCCGCTAAAGGTCACGTTCTTTAGCGG
* **
32111504 CATTTGTGTAAAAAGTGCCGC
66 CATTTGTATAAAAAGCACCGC
32111525 TAAAGGTCACGTTCTTTAGCG
1 TAAAGGTCACGTTCTTTAGCG
32111546 GTGCTTTCTC
Statistics
Matches: 88, Mismatches: 19, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
86 88 1.00
ACGTcount: A:0.25, C:0.17, G:0.24, T:0.33
Consensus pattern (86 bp):
TAAAGGTCACGTTCTTTAGCGACGTTTTAGAGAAAAACGCCGCTAAAGGTCACGTTCTTTAGCGG
CATTTGTATAAAAAGCACCGC
Found at i:32111546 original size:43 final size:43
Alignment explanation
Indices: 32111394--32111546 Score: 191
Period size: 43 Copynumber: 3.6 Consensus size: 43
32111384 GAAAAACGTT
* * * ***
32111394 GCTAAAGGTCATGTTCTTTAGCGGCGTTTGTATGAAAAGCATC
1 GCTAAAGGTCACGTTCTTTAGCGGCGTTTGTGTAAAAAGTGCC
* * * *
32111437 GCTAAAGGTCTCGTTCTTTTGCGTCGTTTTTG-AGAAAAGTGCC
1 GCTAAAGGTCACGTTCTTTAGCGGCGTTTGTGTA-AAAAGTGCC
*
32111480 GCTAAAGGTCACGTTCTTTAGCGGCATTTGTGTAAAAAGTGCC
1 GCTAAAGGTCACGTTCTTTAGCGGCGTTTGTGTAAAAAGTGCC
32111523 GCTAAAGGTCACGTTCTTTAGCGG
1 GCTAAAGGTCACGTTCTTTAGCGG
32111547 TGCTTTCTCA
Statistics
Matches: 93, Mismatches: 15, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
43 92 0.99
44 1 0.01
ACGTcount: A:0.23, C:0.18, G:0.26, T:0.33
Consensus pattern (43 bp):
GCTAAAGGTCACGTTCTTTAGCGGCGTTTGTGTAAAAAGTGCC
Found at i:32111560 original size:43 final size:43
Alignment explanation
Indices: 32111436--32111586 Score: 141
Period size: 43 Copynumber: 3.6 Consensus size: 43
32111426 TGAAAAGCAT
* * * * *
32111436 CGCTAAAGGTCTCGTTCTTTTGCGT-CGTTTTTGAGAAAAGTGC
1 CGCTAAAGGTCACGTTCTTTAGCGTGCATTTCTCA-AAAAGTGC
* *
32111479 CGCTAAAGGTCACGTTCTTTAGCG-GCATTTGTGTAAAAAGTGC
1 CGCTAAAGGTCACGTTCTTTAGCGTGCATTTCT-CAAAAAGTGC
*
32111522 CGCTAAAGGTCACGTTCTTTAGCGGTGC-TTTCTCAAAAA-CGC
1 CGCTAAAGGTCACGTTCTTTAGC-GTGCATTTCTCAAAAAGTGC
* * *
32111564 C-CTAAAAGTTATGTTCTTTAGCG
1 CGCTAAAGGTCACGTTCTTTAGCG
32111587 GTGTTTTTTT
Statistics
Matches: 93, Mismatches: 11, Indels: 11
0.81 0.10 0.10
Matches are distributed among these distances:
40 1 0.01
41 18 0.19
42 3 0.03
43 63 0.68
44 6 0.06
45 2 0.02
ACGTcount: A:0.23, C:0.21, G:0.23, T:0.33
Consensus pattern (43 bp):
CGCTAAAGGTCACGTTCTTTAGCGTGCATTTCTCAAAAAGTGC
Found at i:32119850 original size:18 final size:18
Alignment explanation
Indices: 32119829--32119879 Score: 50
Period size: 18 Copynumber: 2.8 Consensus size: 18
32119819 CATGATTGCT
32119829 TAAATAATATATAAAACA
1 TAAATAATATATAAAACA
*
32119847 TAAAAGAATA-ATAAAACA
1 T-AAATAATATATAAAACA
* *
32119865 CATAATAAGATATAA
1 TA-AATAATATATAA
32119880 TGTATATAAT
Statistics
Matches: 26, Mismatches: 4, Indels: 5
0.74 0.11 0.14
Matches are distributed among these distances:
17 1 0.04
18 14 0.54
19 11 0.42
ACGTcount: A:0.67, C:0.06, G:0.04, T:0.24
Consensus pattern (18 bp):
TAAATAATATATAAAACA
Found at i:32120319 original size:35 final size:35
Alignment explanation
Indices: 32120273--32120341 Score: 138
Period size: 35 Copynumber: 2.0 Consensus size: 35
32120263 TAAACTTAAT
32120273 GGAAACTATACATTCATTGAAAATTTTTACATAAC
1 GGAAACTATACATTCATTGAAAATTTTTACATAAC
32120308 GGAAACTATACATTCATTGAAAATTTTTACATAA
1 GGAAACTATACATTCATTGAAAATTTTTACATAA
32120342 AATAATGTGA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 34 1.00
ACGTcount: A:0.43, C:0.13, G:0.09, T:0.35
Consensus pattern (35 bp):
GGAAACTATACATTCATTGAAAATTTTTACATAAC
Found at i:32121813 original size:22 final size:22
Alignment explanation
Indices: 32121786--32121836 Score: 59
Period size: 22 Copynumber: 2.3 Consensus size: 22
32121776 ACTTTTATTG
32121786 GTTTTTATCTTA-ATTTATTTTT
1 GTTTTTAT-TTATATTTATTTTT
* *
32121808 GTTTTTGTTTATTTTTATTTTT
1 GTTTTTATTTATATTTATTTTT
32121830 GATTTTT
1 G-TTTTT
32121837 CTCTAACAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
21 3 0.12
22 17 0.68
23 5 0.20
ACGTcount: A:0.14, C:0.02, G:0.08, T:0.76
Consensus pattern (22 bp):
GTTTTTATTTATATTTATTTTT
Found at i:32121818 original size:16 final size:16
Alignment explanation
Indices: 32121799--32121830 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
32121789 TTTATCTTAA
*
32121799 TTTATTTTTGTTTTTG
1 TTTATTTTTATTTTTG
32121815 TTTATTTTTATTTTTG
1 TTTATTTTTATTTTTG
32121831 ATTTTTCTCT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.09, C:0.00, G:0.09, T:0.81
Consensus pattern (16 bp):
TTTATTTTTATTTTTG
Found at i:32123358 original size:18 final size:18
Alignment explanation
Indices: 32123335--32123369 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
32123325 TAAAAAAATC
*
32123335 ATGATATTATTAATAATG
1 ATGATATTAATAATAATG
32123353 ATGATATTAATAATAAT
1 ATGATATTAATAATAAT
32123370 ATAATAAAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.49, C:0.00, G:0.09, T:0.43
Consensus pattern (18 bp):
ATGATATTAATAATAATG
Found at i:32123510 original size:3 final size:3
Alignment explanation
Indices: 32123504--32123573 Score: 74
Period size: 3 Copynumber: 24.0 Consensus size: 3
32123494 CAAAACTGAT
* * *
32123504 TAA TAA T-A TGA TAA TAA TAA TAA CTAA TAG TAA TAG TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA -TAA TAA TAA TAA TAA TAA TAA
*
32123549 TAA T-A GAA T-A TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA
32123574 GATAAAGAAC
Statistics
Matches: 56, Mismatches: 7, Indels: 8
0.79 0.10 0.11
Matches are distributed among these distances:
2 5 0.09
3 48 0.86
4 3 0.05
ACGTcount: A:0.60, C:0.01, G:0.06, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:32123544 original size:25 final size:24
Alignment explanation
Indices: 32123514--32123573 Score: 77
Period size: 25 Copynumber: 2.4 Consensus size: 24
32123504 TAATAATATG
32123514 ATAATAATAATAACT-AATAGTAATA
1 ATAATAATAATAA-TAAATA-TAATA
*
32123539 GTAATAATAATAATAGAATATAATA
1 ATAATAATAATAATA-AATATAATA
32123564 ATAATAATAA
1 ATAATAATAA
32123574 GATAAAGAAC
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
24 1 0.03
25 26 0.84
26 4 0.13
ACGTcount: A:0.62, C:0.02, G:0.05, T:0.32
Consensus pattern (24 bp):
ATAATAATAATAATAAATATAATA
Found at i:32123546 original size:22 final size:19
Alignment explanation
Indices: 32123504--32123572 Score: 86
Period size: 19 Copynumber: 3.4 Consensus size: 19
32123494 CAAAACTGAT
32123504 TAATAATATG-ATAATAATAA
1 TAATAATA-GAAT-ATAATAA
32123524 TAACTAATAGTAATAGTAATAA
1 TAA-TAATAG-AATA-TAATAA
32123546 TAATAATAGAATATAATAA
1 TAATAATAGAATATAATAA
32123565 TAATAATA
1 TAATAATA
32123573 AGATAAAGAA
Statistics
Matches: 45, Mismatches: 0, Indels: 9
0.83 0.00 0.17
Matches are distributed among these distances:
19 14 0.31
20 8 0.18
21 12 0.27
22 11 0.24
ACGTcount: A:0.59, C:0.01, G:0.06, T:0.33
Consensus pattern (19 bp):
TAATAATAGAATATAATAA
Found at i:32123633 original size:30 final size:27
Alignment explanation
Indices: 32123597--32123670 Score: 87
Period size: 27 Copynumber: 2.6 Consensus size: 27
32123587 AGTAATGCAT
32123597 TAATAATAATAGTAAAGACAATAATGATTA
1 TAATAATAATA-TAAA-A-AATAATGATTA
32123627 TAATAATAATATAAAAAATAATGA-TA
1 TAATAATAATATAAAAAATAATGATTA
32123653 TTAATACATATATATAAA
1 -TAATA-ATA-ATATAAA
32123671 TATAAATATA
Statistics
Matches: 41, Mismatches: 0, Indels: 7
0.85 0.00 0.15
Matches are distributed among these distances:
26 2 0.05
27 13 0.32
28 4 0.10
29 11 0.27
30 11 0.27
ACGTcount: A:0.59, C:0.03, G:0.05, T:0.32
Consensus pattern (27 bp):
TAATAATAATATAAAAAATAATGATTA
Found at i:32123672 original size:14 final size:13
Alignment explanation
Indices: 32123616--32123699 Score: 50
Period size: 12 Copynumber: 6.4 Consensus size: 13
32123606 TAGTAAAGAC
32123616 AATAATGAT-TAT-
1 AATAAT-ATATATA
32123628 AATAATA-ATATA
1 AATAATATATATA
* *
32123640 AAAAATAATGATATT
1 AATAAT-AT-ATATA
32123655 AATACATATATATA
1 AATA-ATATATATA
*
32123669 AAT-ATAAATATA
1 AATAATATATATA
* *
32123681 AATATAAATAGATA
1 AATA-ATATATATA
32123695 AATAA
1 AATAA
32123700 AAATTAGATA
Statistics
Matches: 56, Mismatches: 8, Indels: 15
0.71 0.10 0.19
Matches are distributed among these distances:
11 4 0.07
12 22 0.39
13 2 0.04
14 17 0.30
15 9 0.16
16 2 0.04
ACGTcount: A:0.62, C:0.01, G:0.04, T:0.33
Consensus pattern (13 bp):
AATAATATATATA
Found at i:32123703 original size:6 final size:6
Alignment explanation
Indices: 32123664--32123690 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
32123654 TAATACATAT
32123664 ATATAA ATATAA ATATAA ATATAA ATA
1 ATATAA ATATAA ATATAA ATATAA ATA
32123691 GATAAATAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (6 bp):
ATATAA
Found at i:32123709 original size:15 final size:14
Alignment explanation
Indices: 32123666--32123720 Score: 51
Period size: 14 Copynumber: 4.0 Consensus size: 14
32123656 ATACATATAT
*
32123666 ATAAATATAAAT--
1 ATAAATAAAAATAG
*
32123678 ATAAATATAAATAG
1 ATAAATAAAAATAG
32123692 ATAAATAAAAATTAG
1 ATAAATAAAAA-TAG
* *
32123707 ATAAGTAATAATAG
1 ATAAATAAAAATAG
32123721 TGTTTGAATA
Statistics
Matches: 37, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
12 12 0.32
14 13 0.35
15 12 0.32
ACGTcount: A:0.64, C:0.00, G:0.07, T:0.29
Consensus pattern (14 bp):
ATAAATAAAAATAG
Found at i:32124589 original size:3 final size:3
Alignment explanation
Indices: 32124583--32124615 Score: 66
Period size: 3 Copynumber: 11.0 Consensus size: 3
32124573 GGAACAAGAA
32124583 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
32124616 GAAAGAAAAG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:32125593 original size:133 final size:135
Alignment explanation
Indices: 32125373--32125623 Score: 296
Period size: 133 Copynumber: 1.9 Consensus size: 135
32125363 AATTTCAACT
** * * **
32125373 TGCTCCACTGCAACTTCAGGGAGATAAGGTTTGCGTATTTTTATCCTGCTTTACAGCAACTTCAG
1 TGCTCCACTGCAACTTCAGGGAGATAAGACTTGCGTATCTTCATCCTGCTCCACAGCAACTTCAG
* * ** * *
32125438 AGAGATAAGGATTATGGTTTCAATTTTCTCCACTACAACTTTAGGGAGATAAGATCTGCTATCTT
66 AGAGATAAGGACTATGCTTTCAACCTGCTCCACTACAACTTCAGGGAGATAAGATCTGCTATCTT
32125503 CAGTC
131 CAGTC
* *
32125508 TGCT-CACTGCAACTTCAGGGAGATAAGACTTGC-TATCTTCAGT-TTGCTCCACTGCAACTTCA
1 TGCTCCACTGCAACTTCAGGGAGATAAGACTTGCGTATCTTCA-TCCTGCTCCACAGCAACTTCA
* *
32125570 GGGAGATAA-GACT-TGCTACTTCAACCTGCTCCACTGCAACTTCAGGGAGATAAG
65 GAGAGATAAGGACTATGCT--TTCAACCTGCTCCACTACAACTTCAGGGAGATAAG
32125624 GTTTTTGTAT
Statistics
Matches: 97, Mismatches: 16, Indels: 8
0.80 0.13 0.07
Matches are distributed among these distances:
131 3 0.03
132 3 0.03
133 59 0.61
134 28 0.29
135 4 0.04
ACGTcount: A:0.27, C:0.23, G:0.20, T:0.31
Consensus pattern (135 bp):
TGCTCCACTGCAACTTCAGGGAGATAAGACTTGCGTATCTTCATCCTGCTCCACAGCAACTTCAG
AGAGATAAGGACTATGCTTTCAACCTGCTCCACTACAACTTCAGGGAGATAAGATCTGCTATCTT
CAGTC
Found at i:32125638 original size:223 final size:224
Alignment explanation
Indices: 32125347--32125801 Score: 671
Period size: 223 Copynumber: 2.0 Consensus size: 224
32125337 GGAACTTAAA
* * *
32125347 GGAGATAAGAATTGGTAATTTCAACTTGCTCCACTGCAACTTCAGGGAGATAAGGTTTGCGTATT
1 GGAGATAAGAATTGCTAACTTCAACCTGCTCCACTGCAACTTCAGGGAGATAAGGTTTGCGTATT
* * *
32125412 TTTATCCTGCTTTACAGCAACTTCAGAGAGATAAGGATTATGGTTTCAATTTTCTCCACTACAAC
66 TTTATCCTGCTCTACAGCAACTTCAGAGAGATAAGGATTATGGTTTCAATCTGCTCCACTACAAC
* * *
32125477 TTTAGGGAGATAAGATCTGCTATCTTCAGTCTGCT-CACTGCAACTTCAGGGAGATAAGACTTGC
131 TTCAGGGAGATAAGATCTGCTATCTTCAGACTGCTCCACTGCAACTTCAAGGAGATAAGACTTGC
*** * *
32125541 TATCTTCAGTTTGCTCCACTGCAACTTCAG
196 TA-CTTCAACCTACTCCACTACAACTTCAG
* **
32125571 GGAGATAAGACTTGCT-ACTTCAACCTGCTCCACTGCAACTTCAGGGAGATAAGGTTTTTGTATT
1 GGAGATAAGAATTGCTAACTTCAACCTGCTCCACTGCAACTTCAGGGAGATAAGGTTTGCGTATT
* * * * **
32125635 TTTATCCTGCTCTACTGCAACTTCAGAGAGATAAGGATTATGGTTTCGATCTGCTTCAGTGTAAC
66 TTTATCCTGCTCTACAGCAACTTCAGAGAGATAAGGATTATGGTTTCAATCTGCTCCACTACAAC
32125700 TTCAGGGAGATAAGATCTGCTATCTTCAGACTGCTCCACTGCAACTTCAAGGAGATAAGACTTGC
131 TTCAGGGAGATAAGATCTGCTATCTTCAGACTGCTCCACTGCAACTTCAAGGAGATAAGACTTGC
*
32125765 TACTTCAACCTACTCCACTACTACTTCAG
196 TACTTCAACCTACTCCACTACAACTTCAG
32125794 GGAGATAA
1 GGAGATAA
32125802 AGTTTGCTAT
Statistics
Matches: 206, Mismatches: 24, Indels: 3
0.88 0.10 0.01
Matches are distributed among these distances:
223 162 0.79
224 44 0.21
ACGTcount: A:0.27, C:0.22, G:0.20, T:0.31
Consensus pattern (224 bp):
GGAGATAAGAATTGCTAACTTCAACCTGCTCCACTGCAACTTCAGGGAGATAAGGTTTGCGTATT
TTTATCCTGCTCTACAGCAACTTCAGAGAGATAAGGATTATGGTTTCAATCTGCTCCACTACAAC
TTCAGGGAGATAAGATCTGCTATCTTCAGACTGCTCCACTGCAACTTCAAGGAGATAAGACTTGC
TACTTCAACCTACTCCACTACAACTTCAG
Found at i:32125668 original size:179 final size:178
Alignment explanation
Indices: 32125372--32125855 Score: 504
Period size: 179 Copynumber: 2.7 Consensus size: 178
32125362 TAATTTCAAC
** * * * ** *
32125372 TTGCTCCACTGCAACTTCAGGGAGATAAGGTTTGCGTATTTTTATCCTGCTTTACAGCAACTTCA
1 TTGCTCCACTGCAACTTCAGGGAGATAAGACTTGC-TA-CTTCAACCTGCTCCACTGCAACTTCA
* * * * * * * * * * *
32125437 GAGAGATAAGGATTATG-GTTTCAATTTTCTCCACTACAACTTTAGGGAGATAAGATCTGCT-AT
64 GGGAGATAAGG-TTTTGTATTTTAATATGCTCTACTGCAACTTCAGAGAGATAAGATCTGATGAT
*
32125500 CTTC-AGTCTGC-TCACTGCAACTTCAGGGAGATAAGA-CTTGCTATCTTCAGT
128 -TTCGA-TCTGCTTCACTGCAACTTCAGGGAGATAAGATC-TGCTATCTTCAGA
32125551 TTGCTCCACTGCAACTTCAGGGAGATAAGACTTGCTACTTCAACCTGCTCCACTGCAACTTCAGG
1 TTGCTCCACTGCAACTTCAGGGAGATAAGACTTGCTACTTCAACCTGCTCCACTGCAACTTCAGG
* * *
32125616 GAGATAAGGTTTTTGTATTTTTATCCTGCTCTACTGCAACTTCAGAGAGATAAGGAT-T-ATGGT
66 GAGATAAGG-TTTTGTATTTTAAT-ATGCTCTACTGCAACTTCAGAGAGATAA-GATCTGATGAT
* *
32125679 TTCGATCTGCTTCAGTGTAACTTCAGGGAGATAAGATCTGCTATCTTCAGA
128 TTCGATCTGCTTCACTGCAACTTCAGGGAGATAAGATCTGCTATCTTCAGA
* * * * *
32125730 CTGCTCCACTGCAACTTCAAGGAGATAAGACTTGCTACTTCAACCTACTCCACTACTACTTCAGG
1 TTGCTCCACTGCAACTTCAGGGAGATAAGACTTGCTACTTCAACCTGCTCCACTGCAACTTCAGG
* * *
32125795 GAGATAAAG-TTTGCTA---TGATATGCTCTACTGCAACTTCAGAGAGATAAGATCTGATTATTT
66 GAGATAAGGTTTTG-TATTTTAATATGCTCTACTGCAACTTCAGAGAGATAAGATCTGATGATTT
32125856 ATAGCTTCAA
Statistics
Matches: 260, Mismatches: 35, Indels: 24
0.82 0.11 0.08
Matches are distributed among these distances:
173 3 0.01
174 28 0.11
175 8 0.03
177 38 0.15
178 18 0.07
179 161 0.62
180 4 0.02
ACGTcount: A:0.27, C:0.21, G:0.19, T:0.32
Consensus pattern (178 bp):
TTGCTCCACTGCAACTTCAGGGAGATAAGACTTGCTACTTCAACCTGCTCCACTGCAACTTCAGG
GAGATAAGGTTTTGTATTTTAATATGCTCTACTGCAACTTCAGAGAGATAAGATCTGATGATTTC
GATCTGCTTCACTGCAACTTCAGGGAGATAAGATCTGCTATCTTCAGA
Found at i:32125689 original size:90 final size:88
Alignment explanation
Indices: 32125373--32125844 Score: 301
Period size: 89 Copynumber: 5.3 Consensus size: 88
32125363 AATTTCAACT
* ** ** * *
32125373 TGCTCCACTGCAACTTCAGGGAGATAAGGTTTGCGTATTTTTATCCTGCTTTACAGCAACTTCAG
1 TGCTCCACTGCAACTTCAGAGAGATAAGACTTGC-TA-TTCAAT-CTGC-TCACTGCAACTTCAG
* * * * *
32125438 AGAGATAAGGA-TT-ATGGT-TTCAATT
62 GGAGATAAGGACTTGCT-ATCTTCAGTC
* * * * *
32125463 TTCTCCACTACAACTTTAGGGAGATAAGA-TCTGCTATCTTCAGTCTGCTCACTGCAACTTCAGG
1 TGCTCCACTGCAACTTCAGAGAGATAAGACT-TGCTA--TTCAATCTGCTCACTGCAACTTCAGG
*
32125527 GAGATAA-GACTTGCTATCTTCAGTT
63 GAGATAAGGACTTGCTATCTTCAGTC
* *
32125552 TGCTCCACTGCAACTTCAGGGAGATAAGACTTGCTACTTCAACCTGCTCCACTGCAACTTCAGGG
1 TGCTCCACTGCAACTTCAGAGAGATAAGACTTGCTA-TTCAATCTGCT-CACTGCAACTTCAGGG
** * *
32125617 AGATAAGGTTTTTG-TATTTTTA-TCC
64 AGATAAGG-ACTTGCTATCTTCAGT-C
* * * * * *
32125642 TGCTCTACTGCAACTTCAGAGAGATAAGGATTATGGT-TTCGATCTGCTTCAGTGTAACTTCAGG
1 TGCTCCACTGCAACTTCAGAGAGATAA-GACT-TGCTATTCAATCTGC-TCACTGCAACTTCAGG
*
32125706 GAGATAA-GA-TCTGCTATCTTCAGAC
63 GAGATAAGGACT-TGCTATCTTCAGTC
* * * *
32125731 TGCTCCACTGCAACTTCA-AGGAGATAAGACTTGCTACTTCAACCTACTCCACTACTACTTCAGG
1 TGCTCCACTGCAACTTCAGA-GAGATAAGACTTGCTA-TTCAATCTGCT-CACTGCAACTTCAGG
* * * *
32125795 GAGATAAAG-TTTGCTA---TGA-TA
63 GAGATAAGGACTTGCTATCTTCAGTC
*
32125816 TGCTCTACTGCAACTTCAGAGAGATAAGA
1 TGCTCCACTGCAACTTCAGAGAGATAAGA
32125845 TCTGATTATT
Statistics
Matches: 309, Mismatches: 50, Indels: 51
0.75 0.12 0.12
Matches are distributed among these distances:
85 26 0.08
86 3 0.01
87 6 0.02
88 40 0.13
89 130 0.42
90 94 0.30
91 7 0.02
92 3 0.01
ACGTcount: A:0.27, C:0.22, G:0.19, T:0.31
Consensus pattern (88 bp):
TGCTCCACTGCAACTTCAGAGAGATAAGACTTGCTATTCAATCTGCTCACTGCAACTTCAGGGAG
ATAAGGACTTGCTATCTTCAGTC
Found at i:32125810 original size:89 final size:90
Alignment explanation
Indices: 32125465--32125811 Score: 334
Period size: 89 Copynumber: 3.9 Consensus size: 90
32125455 TTTCAATTTT
* * * * **
32125465 CTCCACTACAACTTTAGGGAGATAAGA-TCTGCTATCTTCAGTCTGCT-CACTGCAACTTCAGGG
1 CTCCACTGCAACTTCAAGGAGATAAGACTATGCTA-CTTCAACCTGCTCCACTGCAACTTCAGGG
* **
32125528 AGATAAGACTTGCTATCTTCAGTTTG
65 AGATAAGATTTGCTATCTTCAGACTG
*
32125554 CTCCACTGCAACTTCAGGGAGATAAGACT-TGCTACTTCAACCTGCTCCACTGCAACTTCAGGGA
1 CTCCACTGCAACTTCAAGGAGATAAGACTATGCTACTTCAACCTGCTCCACTGCAACTTCAGGGA
* * * **
32125618 GATAAGGTTTTTG-TATTTTTATCCTG
66 GATAA-G-ATTTGCTATCTTCAGACTG
* * * * * * * *
32125644 CTCTACTGCAACTTC-AGAGAGATAAGGATTATGGT--TTCGATCTGCTTCAGTGTAACTTCAGG
1 CTCCACTGCAACTTCAAG-GAGATAA-GACTATGCTACTTCAACCTGCTCCACTGCAACTTCAGG
*
32125706 GAGATAAGATCTGCTATCTTCAGACTG
64 GAGATAAGATTTGCTATCTTCAGACTG
* * *
32125733 CTCCACTGCAACTTCAAGGAGATAAGACT-TGCTACTTCAACCTACTCCACTACTACTTCAGGGA
1 CTCCACTGCAACTTCAAGGAGATAAGACTATGCTACTTCAACCTGCTCCACTGCAACTTCAGGGA
32125797 GATAA-AGTTTGCTAT
66 GATAAGA-TTTGCTAT
32125812 GATATGCTCT
Statistics
Matches: 208, Mismatches: 38, Indels: 24
0.77 0.14 0.09
Matches are distributed among these distances:
87 3 0.01
88 17 0.08
89 117 0.56
90 62 0.30
91 6 0.03
92 3 0.01
ACGTcount: A:0.27, C:0.23, G:0.19, T:0.31
Consensus pattern (90 bp):
CTCCACTGCAACTTCAAGGAGATAAGACTATGCTACTTCAACCTGCTCCACTGCAACTTCAGGGA
GATAAGATTTGCTATCTTCAGACTG
Found at i:32126076 original size:44 final size:44
Alignment explanation
Indices: 32125310--32126078 Score: 338
Period size: 44 Copynumber: 17.2 Consensus size: 44
32125300 CAAGGAGAAG
* * * * * * *
32125310 AGATTTGTAGCTTCGATCTACTCCGCTGGAACTTAAAGGAGATA
1 AGATTTGTGGCTTCAATCTGCTCCACTGCAACTTCAGGGAGATA
* ***
32125354 AGAATTGGTAATTTCAA-CTTGCTCCACTGCAACTTCAGGGAGATA
1 AG-ATTTGTGGCTTCAATC-TGCTCCACTGCAACTTCAGGGAGATA
* * ** ** ** * *
32125399 AGGTTTGCGTATTTTTATCCTGCTTTACAGCAACTTCAGAGAGATA
1 AGATTTGTG-GCTTCAAT-CTGCTCCACTGCAACTTCAGGGAGATA
* * * * * *
32125445 AGGA-TTATGGTTTCAATTTTCTCCACTACAACTTTAGGGAGATA
1 A-GATTTGTGGCTTCAATCTGCTCCACTGCAACTTCAGGGAGATA
* ** *
32125489 AGATCTGCTATCTTCAGTCTGCT-CACTGCAACTTCAGGGAGATA
1 AGATTTG-TGGCTTCAATCTGCTCCACTGCAACTTCAGGGAGATA
* ** * *
32125533 AGACTTGCTATCTTCAGTTTGCTCCACTGCAACTTCAGGGAGATA
1 AGATTTG-TGGCTTCAATCTGCTCCACTGCAACTTCAGGGAGATA
* * *
32125578 AGACTTGCT-ACTTCAACCTGCTCCACTGCAACTTCAGGGAGATA
1 AGATTTG-TGGCTTCAATCTGCTCCACTGCAACTTCAGGGAGATA
* * ** ** * *
32125622 AGGTTTTTGTATTTTTATCCTGCTCTACTGCAACTTCAGAGAGATA
1 AGATTTGTG-GCTTCAAT-CTGCTCCACTGCAACTTCAGGGAGATA
* * * * * *
32125668 AGGA-TTATGGTTTCGATCTGCTTCAGTGTAACTTCAGGGAGATA
1 A-GATTTGTGGCTTCAATCTGCTCCACTGCAACTTCAGGGAGATA
* ** *
32125712 AGATCTGCTATCTTCAGA-CTGCTCCACTGCAACTTCAAGGAGATA
1 AGATTTG-TGGCTTCA-ATCTGCTCCACTGCAACTTCAGGGAGATA
* * * * * *
32125757 AGACTTGCT-ACTTCAACCTACTCCACTACTACTTCAGGGAGATA
1 AGATTTG-TGGCTTCAATCTGCTCCACTGCAACTTCAGGGAGATA
* * * * *
32125801 A-AGTT-T-GCTAT-GATATGCTCTACTGCAACTTCAGAGAGATAA
1 AGATTTGTGGCT-TCAATCTGCTCCACTGCAACTTCAGGGAGAT-A
* * * * * * *
32125843 GATCTGATTATTTATAGCTTCAATTTGTTCTACTGCAACTTTAGGGAAATA
1 -A---G---ATTTGTGGCTTCAATCTGCTCCACTGCAACTTCAGGGAGATA
** * * * *
32125894 AGGCTAGTGGCTTCAATCTGCTTCACTGAAACTTCAGGAAGATA
1 AGATTTGTGGCTTCAATCTGCTCCACTGCAACTTCAGGGAGATA
* **** * * * * *
32125938 AGATCTGCCATTTGCAATCTACTCCACTAG-AATTTCAAGGAAATG
1 AGATTTGTGGCTT-CAATCTGCTCCACT-GCAACTTCAGGGAGATA
* * * * **
32125983 AGATTTCCTGTCTTTAGTCTGCTCTGCTGCAACTTCAGGGAGATA
1 AGATTT-GTGGCTTCAATCTGCTCCACTGCAACTTCAGGGAGATA
*
32126028 AGATTTGTGGCTTCAATCTGCTCCACTGCAACTTTAGGGAGATA
1 AGATTTGTGGCTTCAATCTGCTCCACTGCAACTTCAGGGAGATA
32126072 AGATTTG
1 AGATTTG
32126079 CCATGATAAC
Statistics
Matches: 538, Mismatches: 153, Indels: 68
0.71 0.20 0.09
Matches are distributed among these distances:
41 24 0.04
42 2 0.00
43 10 0.02
44 227 0.42
45 178 0.33
46 60 0.11
47 4 0.01
50 4 0.01
51 3 0.01
52 26 0.05
ACGTcount: A:0.28, C:0.21, G:0.20, T:0.32
Consensus pattern (44 bp):
AGATTTGTGGCTTCAATCTGCTCCACTGCAACTTCAGGGAGATA
Found at i:32126620 original size:47 final size:46
Alignment explanation
Indices: 32126472--32126620 Score: 201
Period size: 46 Copynumber: 3.2 Consensus size: 46
32126462 AAAATTTGGT
*
32126472 TTCTTCCATCCATCCCACTACAATTCAGGGGTATAGGATTTGTATC
1 TTCTTCAATCCATCCCACTACAATTCAGGGGTATAGGATTTGTATC
* * * * *
32126518 TTTTTCAATCCCTCCCGCTGCAATTCAGGGGTAAAGGATTTGTATC
1 TTCTTCAATCCATCCCACTACAATTCAGGGGTATAGGATTTGTATC
**
32126564 TTCTTCAATCCATCCCACTACAACTT-AGGGGTATAGGATTTTGTGGC
1 TTCTTCAATCCATCCCACTACAA-TTCAGGGGTATAGGA-TTTGTATC
32126611 TTCTTCAATC
1 TTCTTCAATC
32126621 AATTTGATCT
Statistics
Matches: 88, Mismatches: 13, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
46 70 0.80
47 18 0.20
ACGTcount: A:0.23, C:0.25, G:0.17, T:0.36
Consensus pattern (46 bp):
TTCTTCAATCCATCCCACTACAATTCAGGGGTATAGGATTTGTATC
Found at i:32127510 original size:18 final size:16
Alignment explanation
Indices: 32127489--32127545 Score: 69
Period size: 18 Copynumber: 3.3 Consensus size: 16
32127479 CCTTTTTCTC
32127489 TTTTTCTTTCTTCTTTT
1 TTTTTCTTTCTT-TTTT
*
32127506 CTTTTCTTTTCTTTTATT
1 TTTTTC-TTTCTTTT-TT
32127524 TTATTTCTTTCTTTTTT
1 TT-TTTCTTTCTTTTTT
32127541 TTTTT
1 TTTTT
32127546 GAAATATTTT
Statistics
Matches: 35, Mismatches: 2, Indels: 7
0.80 0.05 0.16
Matches are distributed among these distances:
16 3 0.09
17 11 0.31
18 17 0.49
19 4 0.11
ACGTcount: A:0.04, C:0.14, G:0.00, T:0.82
Consensus pattern (16 bp):
TTTTTCTTTCTTTTTT
Found at i:32132901 original size:18 final size:18
Alignment explanation
Indices: 32132878--32132912 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
32132868 TAAAAAAATC
*
32132878 ATGATATTATTAATAATG
1 ATGATATTAATAATAATG
32132896 ATGATATTAATAATAAT
1 ATGATATTAATAATAAT
32132913 ATAATAAAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.49, C:0.00, G:0.09, T:0.43
Consensus pattern (18 bp):
ATGATATTAATAATAATG
Found at i:32133053 original size:3 final size:3
Alignment explanation
Indices: 32133047--32133113 Score: 66
Period size: 3 Copynumber: 22.0 Consensus size: 3
32133037 CAAAACTGAT
* * *
32133047 TAA TAA T-A TGA TAA TAA TAA TAA CTAA TAG TAA TAG TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA -TAA TAA TAA TAA TAA TAA TAA
32133092 TAA TAGA -AGA TAA TAA TAA TAA
1 TAA TA-A TA-A TAA TAA TAA TAA
32133114 GATAAAGAAC
Statistics
Matches: 55, Mismatches: 5, Indels: 8
0.81 0.07 0.12
Matches are distributed among these distances:
2 2 0.04
3 48 0.87
4 5 0.09
ACGTcount: A:0.60, C:0.01, G:0.07, T:0.31
Consensus pattern (3 bp):
TAA
Found at i:32133089 original size:22 final size:22
Alignment explanation
Indices: 32133056--32133113 Score: 82
Period size: 22 Copynumber: 2.6 Consensus size: 22
32133046 TTAATAATAT
*
32133056 GATAATAATAATAACTAATAGTA
1 GATAATAATAATAA-TAATAGAA
*
32133079 -ATAGTAATAATAATAATAGAA
1 GATAATAATAATAATAATAGAA
32133100 GATAATAATAATAA
1 GATAATAATAATAA
32133114 GATAAAGAAC
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
21 7 0.23
22 24 0.77
ACGTcount: A:0.60, C:0.02, G:0.09, T:0.29
Consensus pattern (22 bp):
GATAATAATAATAATAATAGAA
Found at i:32133105 original size:25 final size:26
Alignment explanation
Indices: 32133049--32133113 Score: 73
Period size: 25 Copynumber: 2.5 Consensus size: 26
32133039 AAACTGATTA
32133049 ATAATATGATAATAATAATAACTAATAG
1 ATAATA-G-TAATAATAATAACTAATAG
32133077 -TAATAGTAATAATAATAA-TAGA-AG
1 ATAATAGTAATAATAATAACTA-ATAG
*
32133101 ATAATAATAATAA
1 ATAATAGTAATAA
32133114 GATAAAGAAC
Statistics
Matches: 34, Mismatches: 1, Indels: 7
0.81 0.02 0.17
Matches are distributed among these distances:
24 4 0.12
25 24 0.71
26 1 0.03
27 5 0.15
ACGTcount: A:0.60, C:0.02, G:0.08, T:0.31
Consensus pattern (26 bp):
ATAATAGTAATAATAATAACTAATAG
Found at i:32133108 original size:28 final size:26
Alignment explanation
Indices: 32133047--32133180 Score: 76
Period size: 28 Copynumber: 4.8 Consensus size: 26
32133037 CAAAACTGAT
*
32133047 TAATAATATGATAATAATAATAACTAA
1 TAATAATATAATAATAATAATAAC-AA
*
32133074 TAGTAATAGTAATAATAATAATAGA-AGA
1 TAATAATA-TAATAATAATAATA-ACA-A
* * *
32133102 TAATAATAATAA-GATAAAGAACAACAA
1 TAATAAT-ATAATAAT-AATAATAACAA
* *
32133129 TAATGCAT-TAATAATAATAGTAAAGGCAA
1 TAAT-AATATAATAATAATAAT-AA--CAA
*
32133158 TAATGATTATAATAATAATAATA
1 TAAT-AATATAATAATAATAATA
32133181 TAAAAAATAA
Statistics
Matches: 81, Mismatches: 14, Indels: 22
0.69 0.12 0.19
Matches are distributed among these distances:
26 6 0.07
27 20 0.25
28 31 0.38
29 12 0.15
30 12 0.15
ACGTcount: A:0.58, C:0.04, G:0.09, T:0.29
Consensus pattern (26 bp):
TAATAATATAATAATAATAATAACAA
Found at i:32133196 original size:15 final size:16
Alignment explanation
Indices: 32133156--32133196 Score: 50
Period size: 15 Copynumber: 2.7 Consensus size: 16
32133146 TAGTAAAGGC
*
32133156 AATAATGAT-TATAAT
1 AATAATGATATATAAA
*
32133171 AATAATAATATA-AAA
1 AATAATGATATATAAA
32133186 AATAATGATAT
1 AATAATGATAT
32133197 TAATACATAT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
15 20 0.91
16 2 0.09
ACGTcount: A:0.61, C:0.00, G:0.05, T:0.34
Consensus pattern (16 bp):
AATAATGATATATAAA
Found at i:32133200 original size:27 final size:28
Alignment explanation
Indices: 32133127--32133213 Score: 79
Period size: 29 Copynumber: 2.9 Consensus size: 28
32133117 AAAGAACAAC
* *
32133127 AATAATG-CATTAATAATAATAGTAAAGGC
1 AATAATGATATTAATAATAATA-TAAA-GA
32133156 AATAATGATTATAATAATAATAATATAAA-A
1 AATAATGA-TAT--TAATAATAATATAAAGA
32133186 AATAATGATATTAATACATATATATAAA
1 AATAATGATATTAATA-ATA-ATATAAA
32133214 TATAAATATA
Statistics
Matches: 50, Mismatches: 2, Indels: 12
0.78 0.03 0.19
Matches are distributed among these distances:
27 5 0.10
28 3 0.06
29 17 0.34
30 8 0.16
31 2 0.04
32 4 0.08
33 11 0.22
ACGTcount: A:0.57, C:0.03, G:0.07, T:0.32
Consensus pattern (28 bp):
AATAATGATATTAATAATAATATAAAGA
Found at i:32133221 original size:20 final size:20
Alignment explanation
Indices: 32133193--32133240 Score: 51
Period size: 20 Copynumber: 2.4 Consensus size: 20
32133183 AAAAATAATG
* * *
32133193 ATATTAATACATATATATAA
1 ATATAAATACAAATAGATAA
*
32133213 ATATAAATATAAATAGATAA
1 ATATAAATACAAATAGATAA
*
32133233 ATAAAAAT
1 ATATAAAT
32133241 TAGATAAGTA
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.62, C:0.02, G:0.02, T:0.33
Consensus pattern (20 bp):
ATATAAATACAAATAGATAA
Found at i:32133232 original size:14 final size:14
Alignment explanation
Indices: 32133193--32133247 Score: 51
Period size: 14 Copynumber: 4.0 Consensus size: 14
32133183 AAAAATAATG
* * *
32133193 ATATTAATACATAT
1 ATATAAATAGATAA
32133207 ATATAAAT--ATAA
1 ATATAAATAGATAA
32133219 ATATAAATAGATAA
1 ATATAAATAGATAA
*
32133233 ATAAAAATTAGATAA
1 ATATAAA-TAGATAA
32133248 GTAATAATAG
Statistics
Matches: 35, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
12 11 0.31
14 17 0.49
15 7 0.20
ACGTcount: A:0.62, C:0.02, G:0.04, T:0.33
Consensus pattern (14 bp):
ATATAAATAGATAA
Found at i:32133246 original size:15 final size:14
Alignment explanation
Indices: 32133215--32133257 Score: 50
Period size: 14 Copynumber: 3.0 Consensus size: 14
32133205 ATATATAAAT
*
32133215 ATAAATATAAATAG
1 ATAAATAAAAATAG
32133229 ATAAATAAAAATTAG
1 ATAAATAAAAA-TAG
* *
32133244 ATAAGTAATAATAG
1 ATAAATAAAAATAG
32133258 TGTTTGAATA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
14 13 0.52
15 12 0.48
ACGTcount: A:0.63, C:0.00, G:0.09, T:0.28
Consensus pattern (14 bp):
ATAAATAAAAATAG
Found at i:32141377 original size:70 final size:70
Alignment explanation
Indices: 32141282--32141494 Score: 266
Period size: 70 Copynumber: 3.0 Consensus size: 70
32141272 ATTGCGGATG
* * * *
32141282 ACAACTATCATCAGTTAT-TCGACTAGCACTGAGTGCAATAATTTGTCGACTCGTTCGACTAGTG
1 ACAACTATCATCGGTTATCT-GACTAGTACTGGGCGCAATAATTTGTCGACTCGTTCGACTAGTG
32141346 TTGGGC
65 TTGGGC
* * *
32141352 ACAACTAGCATCGGTTATCTGACTAGTGCTGGGCGCAATAATTTGTCGACTCGTTCGACTAGTGC
1 ACAACTATCATCGGTTATCTGACTAGTACTGGGCGCAATAATTTGTCGACTCGTTCGACTAGTGT
32141417 TGGGC
66 TGGGC
* * * ** * * * *
32141422 ACAACTATCGTTGGTTACCCAACTAGTACTGGGCACAATAATTTTTTGACTCGTTCAACTAGTGT
1 ACAACTATCATCGGTTATCTGACTAGTACTGGGCGCAATAATTTGTCGACTCGTTCGACTAGTGT
32141487 TGGGC
66 TGGGC
32141492 ACA
1 ACA
32141495 CCAAGAATCT
Statistics
Matches: 123, Mismatches: 19, Indels: 2
0.85 0.13 0.01
Matches are distributed among these distances:
70 122 0.99
71 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.23, T:0.31
Consensus pattern (70 bp):
ACAACTATCATCGGTTATCTGACTAGTACTGGGCGCAATAATTTGTCGACTCGTTCGACTAGTGT
TGGGC
Found at i:32141413 original size:36 final size:36
Alignment explanation
Indices: 32141316--32141421 Score: 105
Period size: 36 Copynumber: 3.0 Consensus size: 36
32141306 AGCACTGAGT
*
32141316 GCAATAATTTGTCGACTCGTTCGACTAGTGTTGGGC
1 GCAATAATTTGTCGACTCGTTCGACTAGTGCTGGGC
* ** *
32141352 ACAACTAGCATCGGT-TA-TC--T-GACTAGTGCTGGGC
1 GCAA-TA--ATTTGTCGACTCGTTCGACTAGTGCTGGGC
32141386 GCAATAATTTGTCGACTCGTTCGACTAGTGCTGGGC
1 GCAATAATTTGTCGACTCGTTCGACTAGTGCTGGGC
32141422 ACAACTATCG
Statistics
Matches: 53, Mismatches: 9, Indels: 16
0.68 0.12 0.21
Matches are distributed among these distances:
31 4 0.08
32 1 0.02
33 4 0.08
34 16 0.30
35 2 0.04
36 17 0.32
37 4 0.08
38 1 0.02
39 4 0.08
ACGTcount: A:0.21, C:0.22, G:0.27, T:0.30
Consensus pattern (36 bp):
GCAATAATTTGTCGACTCGTTCGACTAGTGCTGGGC
Found at i:32145966 original size:18 final size:19
Alignment explanation
Indices: 32145934--32145975 Score: 77
Period size: 18 Copynumber: 2.3 Consensus size: 19
32145924 TTACTTAATT
32145934 TAATATTATTTTATCTAAA
1 TAATATTATTTTATCTAAA
32145953 TAATATTA-TTTATCTAAA
1 TAATATTATTTTATCTAAA
32145971 TAATA
1 TAATA
32145976 ACAACATTTA
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
18 15 0.65
19 8 0.35
ACGTcount: A:0.45, C:0.05, G:0.00, T:0.50
Consensus pattern (19 bp):
TAATATTATTTTATCTAAA
Found at i:32152596 original size:18 final size:17
Alignment explanation
Indices: 32152565--32152598 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
32152555 CAACCAAAAT
*
32152565 AAAAATAAATTAAATAA
1 AAAAATAAAGTAAATAA
32152582 AAAAATAAAAGTAAATA
1 AAAAAT-AAAGTAAATA
32152599 TCTAACCCTT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.76, C:0.00, G:0.03, T:0.21
Consensus pattern (17 bp):
AAAAATAAAGTAAATAA
Found at i:32155653 original size:22 final size:23
Alignment explanation
Indices: 32155606--32155655 Score: 59
Period size: 22 Copynumber: 2.2 Consensus size: 23
32155596 AAAATCTAAA
*
32155606 TTTAACACAACAATCTTAATTGT
1 TTTAACACAACAAACTTAATTGT
*
32155629 TTTAACA-ATCAAACTTATATT-T
1 TTTAACACAACAAACTTA-ATTGT
32155651 TTTAA
1 TTTAA
32155656 TTTGAAAATT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
22 14 0.58
23 10 0.42
ACGTcount: A:0.40, C:0.14, G:0.02, T:0.44
Consensus pattern (23 bp):
TTTAACACAACAAACTTAATTGT
Found at i:32155836 original size:14 final size:15
Alignment explanation
Indices: 32155817--32155849 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
32155807 AACTTAAAAG
*
32155817 TTTCCA-AAATCATT
1 TTTCCACAAAGCATT
32155831 TTTCCACAAAGCATT
1 TTTCCACAAAGCATT
32155846 TTTC
1 TTTC
32155850 AAACCTTATC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 6 0.35
15 11 0.65
ACGTcount: A:0.30, C:0.24, G:0.03, T:0.42
Consensus pattern (15 bp):
TTTCCACAAAGCATT
Found at i:32156822 original size:12 final size:12
Alignment explanation
Indices: 32156805--32156840 Score: 54
Period size: 12 Copynumber: 3.0 Consensus size: 12
32156795 TAAGAATACT
32156805 AAAAAAAAAGAA
1 AAAAAAAAAGAA
32156817 AAAAAAAAAGAA
1 AAAAAAAAAGAA
* *
32156829 AAGAAAGAAGAA
1 AAAAAAAAAGAA
32156841 GCATAAGAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
12 22 1.00
ACGTcount: A:0.86, C:0.00, G:0.14, T:0.00
Consensus pattern (12 bp):
AAAAAAAAAGAA
Found at i:32156958 original size:28 final size:28
Alignment explanation
Indices: 32156899--32156958 Score: 66
Period size: 28 Copynumber: 2.1 Consensus size: 28
32156889 TGAGAAAATG
* * *
32156899 TTTTGGAAAAATATATATCAAATTTTTA
1 TTTTGGAAAAAAAAATATCAAATTCTTA
* * *
32156927 TTTTGGAAAAAAAAATTTTAAATTCTTC
1 TTTTGGAAAAAAAAATATCAAATTCTTA
32156955 TTTT
1 TTTT
32156959 TTTCTCAGTT
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
28 26 1.00
ACGTcount: A:0.40, C:0.05, G:0.07, T:0.48
Consensus pattern (28 bp):
TTTTGGAAAAAAAAATATCAAATTCTTA
Found at i:32160292 original size:41 final size:41
Alignment explanation
Indices: 32160230--32160487 Score: 426
Period size: 41 Copynumber: 6.3 Consensus size: 41
32160220 GTTTGGAATT
* *
32160230 GGTGATATGAATCAGGTTATAAACCTAGCAGGCTAAGTGCC
1 GGTGATCTGAATCAGGCTATAAACCTAGCAGGCTAAGTGCC
*
32160271 GGTGATCTGAATCAGGCTATAAGCCTAGCAGGCTAAGTGCC
1 GGTGATCTGAATCAGGCTATAAACCTAGCAGGCTAAGTGCC
* *
32160312 GGTGATATGAATCAGGTTATAAACCTAGCAGGCTAAGTGCC
1 GGTGATCTGAATCAGGCTATAAACCTAGCAGGCTAAGTGCC
*
32160353 GGTGATCTGAATCAGGCTATAAGCCTAGCAGGCTAAGTGCC
1 GGTGATCTGAATCAGGCTATAAACCTAGCAGGCTAAGTGCC
* *
32160394 GGTGATATGAATCAGGTTATAAACCTAGCAGGCTAAGTGCC
1 GGTGATCTGAATCAGGCTATAAACCTAGCAGGCTAAGTGCC
*
32160435 GGTGATCTGAATCAGGCTATAAGCCTAGCAGGCTAAGTGCC
1 GGTGATCTGAATCAGGCTATAAACCTAGCAGGCTAAGTGCC
*
32160476 GGTGATCCGAAT
1 GGTGATCTGAAT
32160488 ATGATGAATT
Statistics
Matches: 201, Mismatches: 16, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
41 201 1.00
ACGTcount: A:0.29, C:0.19, G:0.28, T:0.23
Consensus pattern (41 bp):
GGTGATCTGAATCAGGCTATAAACCTAGCAGGCTAAGTGCC
Found at i:32160367 original size:82 final size:82
Alignment explanation
Indices: 32160230--32160481 Score: 504
Period size: 82 Copynumber: 3.1 Consensus size: 82
32160220 GTTTGGAATT
32160230 GGTGATATGAATCAGGTTATAAACCTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGCTATAAGC
1 GGTGATATGAATCAGGTTATAAACCTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGCTATAAGC
32160295 CTAGCAGGCTAAGTGCC
66 CTAGCAGGCTAAGTGCC
32160312 GGTGATATGAATCAGGTTATAAACCTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGCTATAAGC
1 GGTGATATGAATCAGGTTATAAACCTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGCTATAAGC
32160377 CTAGCAGGCTAAGTGCC
66 CTAGCAGGCTAAGTGCC
32160394 GGTGATATGAATCAGGTTATAAACCTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGCTATAAGC
1 GGTGATATGAATCAGGTTATAAACCTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGCTATAAGC
32160459 CTAGCAGGCTAAGTGCC
66 CTAGCAGGCTAAGTGCC
32160476 GGTGAT
1 GGTGAT
32160482 CCGAATATGA
Statistics
Matches: 170, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
82 170 1.00
ACGTcount: A:0.29, C:0.19, G:0.29, T:0.23
Consensus pattern (82 bp):
GGTGATATGAATCAGGTTATAAACCTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGCTATAAGC
CTAGCAGGCTAAGTGCC
Found at i:32167257 original size:19 final size:19
Alignment explanation
Indices: 32167233--32167269 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
32167223 TTAATGTGCG
*
32167233 AATATATGTATATGTGTGT
1 AATATATATATATGTGTGT
32167252 AATATATATATATGTGTG
1 AATATATATATATGTGTG
32167270 GATCGAACAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.35, C:0.00, G:0.19, T:0.46
Consensus pattern (19 bp):
AATATATATATATGTGTGT
Found at i:32167544 original size:41 final size:41
Alignment explanation
Indices: 32167482--32167739 Score: 417
Period size: 41 Copynumber: 6.3 Consensus size: 41
32167472 GTTTGGAATT
* *
32167482 GGTGATATGAATCAGGTTATAAACCTAGCAGGCTAAGTGCC
1 GGTGATCTGAATCAGGCTATAAACCTAGCAGGCTAAGTGCC
*
32167523 GGTGATCTGAATCAGGCTATAAGCCTAGCAGGCTAAGTGCC
1 GGTGATCTGAATCAGGCTATAAACCTAGCAGGCTAAGTGCC
* *
32167564 GGTGATATGAATCAGGTTATAAACCTAGCAGGCTAAGTGCC
1 GGTGATCTGAATCAGGCTATAAACCTAGCAGGCTAAGTGCC
* *
32167605 GGTGATCTAAATCAGGCTATAAGCCTAGCAGGCTAAGTGCC
1 GGTGATCTGAATCAGGCTATAAACCTAGCAGGCTAAGTGCC
* *
32167646 GGTGATATGAATCAGGTTATAAACCTAGCAGGCTAAGTGCC
1 GGTGATCTGAATCAGGCTATAAACCTAGCAGGCTAAGTGCC
*
32167687 GGTGATCTGAATCAGGCTATAAGCCTAGCAGGCTAAGTGCC
1 GGTGATCTGAATCAGGCTATAAACCTAGCAGGCTAAGTGCC
*
32167728 GGTGATCCGAAT
1 GGTGATCTGAAT
32167740 ATGATGAATT
Statistics
Matches: 199, Mismatches: 18, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
41 199 1.00
ACGTcount: A:0.29, C:0.19, G:0.28, T:0.23
Consensus pattern (41 bp):
GGTGATCTGAATCAGGCTATAAACCTAGCAGGCTAAGTGCC
Found at i:32167619 original size:82 final size:82
Alignment explanation
Indices: 32167482--32167733 Score: 495
Period size: 82 Copynumber: 3.1 Consensus size: 82
32167472 GTTTGGAATT
32167482 GGTGATATGAATCAGGTTATAAACCTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGCTATAAGC
1 GGTGATATGAATCAGGTTATAAACCTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGCTATAAGC
32167547 CTAGCAGGCTAAGTGCC
66 CTAGCAGGCTAAGTGCC
*
32167564 GGTGATATGAATCAGGTTATAAACCTAGCAGGCTAAGTGCCGGTGATCTAAATCAGGCTATAAGC
1 GGTGATATGAATCAGGTTATAAACCTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGCTATAAGC
32167629 CTAGCAGGCTAAGTGCC
66 CTAGCAGGCTAAGTGCC
32167646 GGTGATATGAATCAGGTTATAAACCTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGCTATAAGC
1 GGTGATATGAATCAGGTTATAAACCTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGCTATAAGC
32167711 CTAGCAGGCTAAGTGCC
66 CTAGCAGGCTAAGTGCC
32167728 GGTGAT
1 GGTGAT
32167734 CCGAATATGA
Statistics
Matches: 168, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
82 168 1.00
ACGTcount: A:0.29, C:0.19, G:0.28, T:0.23
Consensus pattern (82 bp):
GGTGATATGAATCAGGTTATAAACCTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGCTATAAGC
CTAGCAGGCTAAGTGCC
Found at i:32171232 original size:40 final size:39
Alignment explanation
Indices: 32171119--32171280 Score: 171
Period size: 41 Copynumber: 3.9 Consensus size: 39
32171109 TATAAAACAT
* *** *
32171119 AGAGCAATAGCGGCGTTTTACCAAAAATGCCGCTAAAAAC
1 AGAGCATTAGCGGCGTTTT-GGTAAAACGCCGCTAAAAAC
* *
32171159 ATAGAGCAATAGCGGCGTTTTTTGTTAAAACGCCGCTAAAAAC
1 --AGAGCATTAGCGGCG--TTTTGGTAAAACGCCGCTAAAAAC
*
32171202 AGAGCATTAGCGGCGCTTTTGGTAAAACGCCGCTAAAAGCC
1 AGAGCATTAGCGGCG-TTTTGGTAAAACGCCGCTAAAA-AC
*
32171243 AGAGCATTAGCGTCGTTGTTGGTAAAACGCCGCTAAAA
1 AGAGCATTAGCGGCGTT-TTGGTAAAACGCCGCTAAAA
32171281 GTCATATAAC
Statistics
Matches: 107, Mismatches: 9, Indels: 9
0.86 0.07 0.07
Matches are distributed among these distances:
40 23 0.21
41 49 0.46
42 15 0.14
43 16 0.15
44 4 0.04
ACGTcount: A:0.34, C:0.21, G:0.23, T:0.22
Consensus pattern (39 bp):
AGAGCATTAGCGGCGTTTTGGTAAAACGCCGCTAAAAAC
Found at i:32171615 original size:14 final size:15
Alignment explanation
Indices: 32171583--32171618 Score: 56
Period size: 15 Copynumber: 2.5 Consensus size: 15
32171573 TATTTTAACT
*
32171583 TTTATGGATTATAGG
1 TTTAGGGATTATAGG
32171598 TTTAGGGATTAT-GG
1 TTTAGGGATTATAGG
32171612 TTTAGGG
1 TTTAGGG
32171619 GTTAGGGGTC
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
14 9 0.45
15 11 0.55
ACGTcount: A:0.22, C:0.00, G:0.33, T:0.44
Consensus pattern (15 bp):
TTTAGGGATTATAGG
Found at i:32171888 original size:22 final size:22
Alignment explanation
Indices: 32171835--32171885 Score: 70
Period size: 22 Copynumber: 2.4 Consensus size: 22
32171825 ATGATTAAGG
32171835 GTTTAAGGTTTATGAGTTACTA
1 GTTTAAGGTTTATGAGTTACTA
*
32171857 TTTTAAGGTTTATGTA-TTA-TA
1 GTTTAAGGTTTATG-AGTTACTA
32171878 GTTTAAGG
1 GTTTAAGG
32171886 GTTAGGGGTT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
21 9 0.35
22 16 0.62
23 1 0.04
ACGTcount: A:0.27, C:0.02, G:0.22, T:0.49
Consensus pattern (22 bp):
GTTTAAGGTTTATGAGTTACTA
Found at i:32171959 original size:282 final size:281
Alignment explanation
Indices: 32171442--32171962 Score: 755
Period size: 282 Copynumber: 1.9 Consensus size: 281
32171432 GATGTACATC
* * * * *
32171442 ATATGTTAAATATTTTCTTATATAATTGTAAAAGAGATAGTATTAATTTTAAAATATTGAATTAA
1 ATATGATAAATATTTTCTTATATAATTGTAAAAAAGATAATATTAATTTAAAAATATTGAATCAA
** * *
32171507 TTATCATTATAGTTTAAGGTTTATGATTTAGGGCATATGGTTAAGGGTTTAAGGTTTACGAGTTA
66 TTATCATTATAGTTTAAGGTTTACAATTTAGGACATATGATTAAGGGTTTAAGGTTTACGAGTTA
* * * *
32171572 CTATTTTAACTTTTATGGATTATAGGTTTAGGGATTATGGTTTAGGGGTTAGGGGTCTAGGATTA
131 CTATTTTAACGTTTATGGATTATAGGTTTAGGGATTAGGGGTTAGGGGTTAGGGCTCTAGGATTA
*
32171637 AGAGTTTATATTTTAGGATTTAGGATTTAGGGTCTAGGGATTAAGGATTAAGAGTTTAGGGTTTA
196 AGAGTTTATATTTTAGGATTTAGGATTTAGAGTCTAGGGATTAAGGATTAAGAGTTTAGGGTTTA
32171702 GTTAATTAATATTTTTAATTT
261 GTTAATTAATATTTTTAATTT
32171723 ATATGATAAATATTTTCTTATATAATTGTAAAAAAGATAATATTAATTTAAAAATATTGAATCAA
1 ATATGATAAATATTTTCTTATATAATTGTAAAAAAGATAATATTAATTTAAAAATATTGAATCAA
* * *
32171788 TTAATCATTATAGTTTAGGGTTTACAATTTAGGATATATGATTAAGGGTTTAAGGTTTATGAGTT
66 TT-ATCATTATAGTTTAAGGTTTACAATTTAGGACATATGATTAAGGGTTTAAGGTTTACGAGTT
* * * *
32171853 ACTATTTTAAGGTTTATGTATTATA-GTTTAAGGG-TTAGGGGTTATGGGTTATGGGCTC-AGGG
130 ACTATTTTAACGTTTATGGATTATAGGTTT-AGGGATTAGGGGTTAGGGGTTA-GGGCTCTAGGA
*
32171915 TTAATG-GTTTATATTTTAGGATTTTA-GAGTTTAGAGTTTAGGGATTAA
193 TTAA-GAGTTTATATTTTAGGA-TTTAGGA-TTTAGAGTCTAGGGATTAA
32171963 TGGTTTAGAT
Statistics
Matches: 212, Mismatches: 22, Indels: 11
0.87 0.09 0.04
Matches are distributed among these distances:
281 104 0.49
282 108 0.51
ACGTcount: A:0.32, C:0.03, G:0.21, T:0.44
Consensus pattern (281 bp):
ATATGATAAATATTTTCTTATATAATTGTAAAAAAGATAATATTAATTTAAAAATATTGAATCAA
TTATCATTATAGTTTAAGGTTTACAATTTAGGACATATGATTAAGGGTTTAAGGTTTACGAGTTA
CTATTTTAACGTTTATGGATTATAGGTTTAGGGATTAGGGGTTAGGGGTTAGGGCTCTAGGATTA
AGAGTTTATATTTTAGGATTTAGGATTTAGAGTCTAGGGATTAAGGATTAAGAGTTTAGGGTTTA
GTTAATTAATATTTTTAATTT
Found at i:32172287 original size:7 final size:6
Alignment explanation
Indices: 32172261--32172306 Score: 56
Period size: 6 Copynumber: 7.2 Consensus size: 6
32172251 TAACAACATT
*
32172261 AATAATA AATAAA AATAAA ATACAAA AATAAA AATAAA ATATAAA A
1 AATAA-A AATAAA AATAAA A-ATAAA AATAAA AATAAA A-ATAAA A
32172307 TAGAGGTTAG
Statistics
Matches: 35, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
6 19 0.54
7 16 0.46
ACGTcount: A:0.78, C:0.02, G:0.00, T:0.20
Consensus pattern (6 bp):
AATAAA
Found at i:32172287 original size:13 final size:12
Alignment explanation
Indices: 32172267--32172308 Score: 50
Period size: 13 Copynumber: 3.4 Consensus size: 12
32172257 CATTAATAAT
32172267 AAAT-AAAAATA
1 AAATAAAAAATA
32172278 AAATACAAAAATAA
1 AAATA-AAAAAT-A
*
32172292 AAATAAAATATA
1 AAATAAAAAATA
32172304 AAATA
1 AAATA
32172309 GAGGTTAGTG
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
11 4 0.15
12 6 0.22
13 11 0.41
14 6 0.22
ACGTcount: A:0.79, C:0.02, G:0.00, T:0.19
Consensus pattern (12 bp):
AAATAAAAAATA
Found at i:32172289 original size:19 final size:19
Alignment explanation
Indices: 32172267--32172306 Score: 71
Period size: 19 Copynumber: 2.1 Consensus size: 19
32172257 CATTAATAAT
32172267 AAATAAAAATAAAATACAA
1 AAATAAAAATAAAATACAA
*
32172286 AAATAAAAATAAAATATAA
1 AAATAAAAATAAAATACAA
32172305 AA
1 AA
32172307 TAGAGGTTAG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.80, C:0.03, G:0.00, T:0.17
Consensus pattern (19 bp):
AAATAAAAATAAAATACAA
Found at i:32175185 original size:26 final size:26
Alignment explanation
Indices: 32175147--32175254 Score: 198
Period size: 26 Copynumber: 4.2 Consensus size: 26
32175137 TGATACAAAT
*
32175147 TGATAATGAGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
32175173 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
32175199 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
32175225 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
32175251 TGAT
1 TGAT
32175255 GGGAATTTCA
Statistics
Matches: 79, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 79 1.00
ACGTcount: A:0.31, C:0.06, G:0.26, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:32180156 original size:43 final size:43
Alignment explanation
Indices: 32180103--32180240 Score: 190
Period size: 43 Copynumber: 3.2 Consensus size: 43
32180093 TTTCATGACT
* *
32180103 TTTAGTGGCGTTTTTGAGAAAAGCGCCGCTAAAGGTCGTGATC
1 TTTAGCGGCGTTTGTGAGAAAAGCGCCGCTAAAGGTCGTGATC
* **
32180146 TTTAGCGGCGTTTGT-AGGAAAAGCACCGCTAAATTTCGTGATC
1 TTTAGCGGCGTTTGTGA-GAAAAGCGCCGCTAAAGGTCGTGATC
*
32180189 TTTAGCGGCGTTTGTG-GAAAAAGCGCCGCTAAAGGTCATGATC
1 TTTAGCGGCGTTTGTGAG-AAAAGCGCCGCTAAAGGTCGTGATC
32180232 TTTAGCGGC
1 TTTAGCGGC
32180241 ATTTTTTCAA
Statistics
Matches: 83, Mismatches: 9, Indels: 6
0.85 0.09 0.06
Matches are distributed among these distances:
42 2 0.02
43 81 0.98
ACGTcount: A:0.24, C:0.18, G:0.29, T:0.29
Consensus pattern (43 bp):
TTTAGCGGCGTTTGTGAGAAAAGCGCCGCTAAAGGTCGTGATC
Found at i:32195762 original size:40 final size:40
Alignment explanation
Indices: 32195699--32195882 Score: 244
Period size: 40 Copynumber: 4.6 Consensus size: 40
32195689 TATTCGAATG
* * * *
32195699 ATATCTGGGCTAAGTCCCAAAGGCTTTTATGCTAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTGACT
* * * *
32195739 ATATCCGGACTAAGATCCGAAGGCATTTGTGCAAGTTG-CT
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAG-TGACT
* *
32195779 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTGACT
* *
32195819 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTGACT
32195859 ATATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGC
32195883 CTTGTGCGAG
Statistics
Matches: 125, Mismatches: 17, Indels: 4
0.86 0.12 0.03
Matches are distributed among these distances:
39 1 0.01
40 122 0.98
41 2 0.02
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTGACT
Found at i:32196187 original size:22 final size:22
Alignment explanation
Indices: 32196145--32196188 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
32196135 AAAATGTGCA
* *
32196145 TATATGAAGTTATTCATTTAGC
1 TATATGAAGTTATACACTTAGC
32196167 TATATGAATGTTATAC-CTTAGC
1 TATATGAA-GTTATACACTTAGC
32196189 CGAAACTAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 13 0.68
23 6 0.32
ACGTcount: A:0.32, C:0.11, G:0.14, T:0.43
Consensus pattern (22 bp):
TATATGAAGTTATACACTTAGC
Found at i:32198482 original size:68 final size:64
Alignment explanation
Indices: 32198322--32198520 Score: 175
Period size: 68 Copynumber: 3.0 Consensus size: 64
32198312 CTAGCCAGTT
* * * * * * * *
32198322 TATCTCGTAGCTCTCTTGTCTACATGGTGTCCTTCACCTGGAACCACGCATGCAACCTAGCTACA
1 TATCCCGTAGCTCTCTTGTCTACATGATGTAC-ACA-C-AGCACCACACATGCGACCTAGCTACA
32198387 TA
63 TA
* * *
32198389 TATCCCGTAGCTCTCTTGTCTACATGATGTACACACAGTATCACCCATGCGACCTAGCTACATCA
1 TATCCCGTAGCTCTCTTGTCTACATGATGTACACACAGCACCACACATGCGACCTAGCTACAT-A
* * * * *
32198454 TAATGTCTCGTAGCTCTCTTGTAC-ACATGATGTGCACTCAGCACCATACATGTGACCTAGCTAC
1 T-A--TCCCGTAGCTCTCTTGT-CTACATGATGTACACACAGCACCACACATGCGACCTAGCTAC
32198518 ATA
62 ATA
32198521 CCATCTGTAT
Statistics
Matches: 110, Mismatches: 17, Indels: 10
0.80 0.12 0.07
Matches are distributed among these distances:
64 22 0.20
65 3 0.03
66 3 0.03
67 30 0.27
68 51 0.46
69 1 0.01
ACGTcount: A:0.25, C:0.30, G:0.16, T:0.29
Consensus pattern (64 bp):
TATCCCGTAGCTCTCTTGTCTACATGATGTACACACAGCACCACACATGCGACCTAGCTACATA
Found at i:32200426 original size:26 final size:26
Alignment explanation
Indices: 32200386--32200438 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
32200376 GTACCATGAG
*
32200386 AATGTGTATCAACTACCGTTAGTTGA
1 AATGTGTATCAACTACCGTCAGTTGA
*
32200412 AATGTGTATCGACTACCGTCAGTTGA
1 AATGTGTATCAACTACCGTCAGTTGA
32200438 A
1 A
32200439 CAAGTTAGCA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.17, G:0.21, T:0.32
Consensus pattern (26 bp):
AATGTGTATCAACTACCGTCAGTTGA
Found at i:32202206 original size:34 final size:34
Alignment explanation
Indices: 32202159--32202226 Score: 91
Period size: 34 Copynumber: 2.0 Consensus size: 34
32202149 TCAAACAATC
* * *
32202159 TTGGGCCTAAGCCCCTTTCAGTATTAGTAACAGT
1 TTGGGCCTAAGCCCATCTCAGTATCAGTAACAGT
* *
32202193 TTGGGCCTTAGCCCATCTCAGTATCAGTATCAGT
1 TTGGGCCTAAGCCCATCTCAGTATCAGTAACAGT
32202227 CATACAGTTT
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
34 29 1.00
ACGTcount: A:0.22, C:0.25, G:0.21, T:0.32
Consensus pattern (34 bp):
TTGGGCCTAAGCCCATCTCAGTATCAGTAACAGT
Found at i:32205322 original size:86 final size:85
Alignment explanation
Indices: 32205204--32205491 Score: 224
Period size: 85 Copynumber: 3.4 Consensus size: 85
32205194 TTTGCAGCGG
* * * * **
32205204 TTAGTGGCGCTTTCCCTACAAACGCCACTAAAGAACAAGACCTTTAGCGGTGC-TTTCCTAAAAA
1 TTAGCGGCGCTTTCCCCAAAAACGCCGCTAAAGAACAAGACCTTTAGCGGCACTTTTCC--AAAA
*
32205268 AAGCCACTAAAGAACGTGACCT
64 AAGCCACTAAAGAACATGACCT
*** *
32205290 TTAGCGGCGCTTTCCCCAAAAACGCCGCTAAAGAATGTGACCTTTAGCGGCACTTTTCCAAAAAT
1 TTAGCGGCGCTTTCCCCAAAAACGCCGCTAAAGAACAAGACCTTTAGCGGCACTTTTCCAAAAAA
** *
32205355 GCTGCTAAATAACATGACCT
66 GCCACTAAAGAACATGACCT
* * * ** * * * * *
32205375 TTAGCGGCACTCTT-TCCAGAAACGCCGCTAAAGAACCTGACTTTTAACGACGCTTTCCCAAAAA
1 TTAGCGGCGCT-TTCCCCAAAAACGCCGCTAAAGAACAAGACCTTTAGCGGCACTTTTCCAAAAA
* * **
32205439 CGCCACTAAA-AGTCATGTTCT
65 AGCCACTAAAGA-ACATGACCT
* * * *
32205460 TTAACAGCGCTTTTCCCAAAAA-GCCACTAAAG
1 TTAGCGGCGCTTTCCCCAAAAACGCCGCTAAAG
32205492 TTCATGAAAA
Statistics
Matches: 162, Mismatches: 36, Indels: 10
0.78 0.17 0.05
Matches are distributed among these distances:
84 12 0.07
85 99 0.61
86 46 0.28
87 5 0.03
ACGTcount: A:0.32, C:0.28, G:0.16, T:0.24
Consensus pattern (85 bp):
TTAGCGGCGCTTTCCCCAAAAACGCCGCTAAAGAACAAGACCTTTAGCGGCACTTTTCCAAAAAA
GCCACTAAAGAACATGACCT
Found at i:32205352 original size:42 final size:42
Alignment explanation
Indices: 32205204--32205491 Score: 231
Period size: 43 Copynumber: 6.8 Consensus size: 42
32205194 TTTGCAGCGG
* * * *
32205204 TTAGTGGCGCTTTCCCTACAAACGCCACTAAAGAACAAGACCT
1 TTAGCGGCGCTTTTCC-AAAAACGCCACTAAAGAACATGACCT
* * *
32205247 TTAGCGGTGC-TTTCCTAAAAAAAGCCACTAAAGAACGTGACCT
1 TTAGCGGCGCTTTTCC--AAAAACGCCACTAAAGAACATGACCT
* * **
32205290 TTAGCGGCGCTTTCCCCAAAAACGCCGCTAAAGAATGTGACCT
1 TTAGCGGCGCTTT-TCCAAAAACGCCACTAAAGAACATGACCT
* * ** *
32205333 TTAGCGGCACTTTTCCAAAAATGCTGCTAAATAACATGACCT
1 TTAGCGGCGCTTTTCCAAAAACGCCACTAAAGAACATGACCT
* * * * *
32205375 TTAGCGGCACTCTTTCCAGAAACGCCGCTAAAGAACCTGACTT
1 TTAGCGGCGCT-TTTCCAAAAACGCCACTAAAGAACATGACCT
* * * * **
32205418 TTAACGACGCTTTCCCAAAAACGCCACTAAA-AGTCATGTTCT
1 TTAGCGGCGCTTTTCCAAAAACGCCACTAAAGA-ACATGACCT
* *
32205460 TTAACAGCGCTTTTCCCAAAAA-GCCACTAAAG
1 TTAGCGGCGCTTTT-CCAAAAACGCCACTAAAG
32205492 TTCATGAAAA
Statistics
Matches: 198, Mismatches: 40, Indels: 14
0.79 0.16 0.06
Matches are distributed among these distances:
41 1 0.01
42 79 0.40
43 114 0.58
44 2 0.01
45 2 0.01
ACGTcount: A:0.32, C:0.28, G:0.16, T:0.24
Consensus pattern (42 bp):
TTAGCGGCGCTTTTCCAAAAACGCCACTAAAGAACATGACCT
Found at i:32205448 original size:85 final size:85
Alignment explanation
Indices: 32205204--32205448 Score: 240
Period size: 85 Copynumber: 2.9 Consensus size: 85
32205194 TTTGCAGCGG
* * * * * * * *
32205204 TTAGTGGCGCTTTCCCTACAAACGCCACTAAAGAACAAGACCTTTAGCGGTGCTTTCCTAAAAAA
1 TTAGCGGCACTTTCCCCAAAAACGCCGCTAAAGAACATGACCTTTAGCGGCGCTTTCC-CAAAAA
*
32205269 AGCCACTAAAGAACGTGACCT
65 AGCCACTAAAGAACATGACCT
* ** * * *
32205290 TTAGCGGCGCTTTCCCCAAAAACGCCGCTAAAGAATGTGACCTTTAGCGGCACTTTTCCAAAAAT
1 TTAGCGGCACTTTCCCCAAAAACGCCGCTAAAGAACATGACCTTTAGCGGCGCTTTCCCAAAAAA
** *
32205355 GCTGCTAAATAACATGACCT
66 GCCACTAAAGAACATGACCT
* * * * * *
32205375 TTAGCGGCACTCTT-TCCAGAAACGCCGCTAAAGAACCTGACTTTTAACGACGCTTTCCCAAAAA
1 TTAGCGGCACT-TTCCCCAAAAACGCCGCTAAAGAACATGACCTTTAGCGGCGCTTTCCCAAAAA
*
32205439 CGCCACTAAA
65 AGCCACTAAA
32205449 AGTCATGTTC
Statistics
Matches: 129, Mismatches: 29, Indels: 3
0.80 0.18 0.02
Matches are distributed among these distances:
85 79 0.61
86 50 0.39
ACGTcount: A:0.32, C:0.28, G:0.17, T:0.23
Consensus pattern (85 bp):
TTAGCGGCACTTTCCCCAAAAACGCCGCTAAAGAACATGACCTTTAGCGGCGCTTTCCCAAAAAA
GCCACTAAAGAACATGACCT
Found at i:32206149 original size:23 final size:23
Alignment explanation
Indices: 32206117--32206992 Score: 440
Period size: 23 Copynumber: 38.2 Consensus size: 23
32206107 ACATAAACTA
*
32206117 AATTT-CAGCAAC-TAAACAATTC
1 AATTTGCAGC-ACTTAAACACTTC
*
32206139 AATTTGCAGCACTTTAACACTTC
1 AATTTGCAGCACTTAAACACTTC
*
32206162 AATTTGCAGCACTTTTAACACTTC
1 AATTTGCAGCAC-TTAAACACTTC
** *
32206186 AATTTATAGCATTTAAACACTTC
1 AATTTGCAGCACTTAAACACTTC
* *
32206209 AATTTGCAGTACTTTAACA-TCTC
1 AATTTGCAGCACTTAAACACT-TC
** * * * * *
32206232 AATTAACAACATTTATACTCCTC
1 AATTTGCAGCACTTAAACACTTC
* *
32206255 AATTAT--AGCGA--TAAAAAATCTC
1 AATT-TGCAGC-ACTTAAACACT-TC
32206277 AATTT-CTAGCAAC-TAAACACTTC
1 AATTTGC-AGC-ACTTAAACACTTC
*
32206300 AATTTGCAGTACTTAAACACTTC
1 AATTTGCAGCACTTAAACACTTC
* ** * *
32206323 AATTTACAAAAATTTAAACACTTT
1 AATTTGC-AGCACTTAAACACTTC
* *
32206347 AATTTACAACA-TTCAAACACTTC
1 AATTTGCAGCACTT-AAACACTTC
* *
32206370 AATTTGCAGCATTTTAACACTTC
1 AATTTGCAGCACTTAAACACTTC
* * *
32206393 AATTTACAACATTTAAACACTTC
1 AATTTGCAGCACTTAAACACTTC
* *
32206416 AATTTGTAGCACTTTAACACTTC
1 AATTTGCAGCACTTAAACACTTC
32206439 AATTTGCAGCACTTTAAACACTTC
1 AATTTGCAGCAC-TTAAACACTTC
* * *
32206463 AATTTGCCGCACTTTAACACCTC
1 AATTTGCAGCACTTAAACACTTC
** * * * *
32206486 AATTAACAACATTTATACACCTC
1 AATTTGCAGCACTTAAACACTTC
* *
32206509 AA-TTACAGCGA-TAAAACA-TCTC
1 AATTTGCAGC-ACTTAAACACT-TC
*
32206531 AATTTCCAGCAAC-TAAACACTTC
1 AATTTGCAGC-ACTTAAACACTTC
*
32206554 AATTTGCAGTACTTAAACACTTC
1 AATTTGCAGCACTTAAACACTTC
* * * *
32206577 AATTTACAACATTTAAGCACTTC
1 AATTTGCAGCACTTAAACACTTC
* * *
32206600 AATTTACAACATTTAAACACTTC
1 AATTTGCAGCACTTAAACACTTC
** *
32206623 AATTTGCTTCACTTTAACA-TCTC
1 AATTTGCAGCACTTAAACACT-TC
** * * * * *
32206646 AATTAACAACATTTATACACCTA
1 AATTTGCAGCACTTAAACACTTC
*
32206669 AATTAT--AGCGA-TAAAACA-TCTC
1 AATT-TGCAGC-ACTTAAACACT-TC
* *
32206691 AATTTCCAGCAAC-TATACACTTC
1 AATTTGCAGC-ACTTAAACACTTC
*
32206714 AATTTGCAGTACTTAAACACTTC
1 AATTTGCAGCACTTAAACACTTC
* * * *
32206737 AATTTACAACATTTAAGCACTTC
1 AATTTGCAGCACTTAAACACTTC
* * *
32206760 AATTTACAACATTTAAACACTTC
1 AATTTGCAGCACTTAAACACTTC
** * *
32206783 AATTTGCTTCACTTTAGCA-TCTC
1 AATTTGCAGCACTTAAACACT-TC
** * * * *
32206806 AATTAACAACATTTATACACCTC
1 AATTTGCAGCACTTAAACACTTC
*
32206829 AATTAT--AGCGA-TAAAACA-TCTC
1 AATT-TGCAGC-ACTTAAACACT-TC
*
32206851 AATTT-CTAGCAAC-TATACACTTC
1 AATTTGC-AGC-ACTTAAACACTTC
*
32206874 AATTTGCAGTACTTAAACACTTC
1 AATTTGCAGCACTTAAACACTTC
* * * * *
32206897 AATTTACAACATTTAAGCAGTTC
1 AATTTGCAGCACTTAAACACTTC
* * *
32206920 AATTTACAACATTTAAACACTTC
1 AATTTGCAGCACTTAAACACTTC
* * *
32206943 AATTTACAACATTTAAACACTTC
1 AATTTGCAGCACTTAAACACTTC
*
32206966 AATTTGCAGCACTTTAACA-TCTC
1 AATTTGCAGCACTTAAACACT-TC
32206989 AATT
1 AATT
32206993 AACAACATTT
Statistics
Matches: 663, Mismatches: 146, Indels: 89
0.74 0.16 0.10
Matches are distributed among these distances:
21 6 0.01
22 68 0.10
23 516 0.78
24 73 0.11
ACGTcount: A:0.38, C:0.23, G:0.05, T:0.34
Consensus pattern (23 bp):
AATTTGCAGCACTTAAACACTTC
Found at i:32206993 original size:160 final size:160
Alignment explanation
Indices: 32206386--32206947 Score: 937
Period size: 160 Copynumber: 3.5 Consensus size: 160
32206376 CAGCATTTTA
* ** * ** * * *
32206386 ACACTTCAATTTACAACATTTAAACACTTCAATTTGTAGCACTTTAA-CACTTCAATTTGCAGCA
1 ACACTTCAATTTGCAGTACTTAAACACTTCAATTTACAACA-TTTAAGCACTTCAATTTACAACA
** * *
32206450 CTTTAAACACTTCAATTTGCCGCACTTTAACACCTCAATTAACAACATTTATACACCTCAATTAC
65 -TTTAAACACTTCAATTTGCTTCACTTTAACATCTCAATTAACAACATTTATACACCTCAATTAT
*
32206515 AGCGATAAAACATCTCAATTTCCAGCAACTAA
129 AGCGATAAAACATCTCAATTTCCAGCAACTAT
32206547 ACACTTCAATTTGCAGTACTTAAACACTTCAATTTACAACATTTAAGCACTTCAATTTACAACAT
1 ACACTTCAATTTGCAGTACTTAAACACTTCAATTTACAACATTTAAGCACTTCAATTTACAACAT
*
32206612 TTAAACACTTCAATTTGCTTCACTTTAACATCTCAATTAACAACATTTATACACCTAAATTATAG
66 TTAAACACTTCAATTTGCTTCACTTTAACATCTCAATTAACAACATTTATACACCTCAATTATAG
32206677 CGATAAAACATCTCAATTTCCAGCAACTAT
131 CGATAAAACATCTCAATTTCCAGCAACTAT
32206707 ACACTTCAATTTGCAGTACTTAAACACTTCAATTTACAACATTTAAGCACTTCAATTTACAACAT
1 ACACTTCAATTTGCAGTACTTAAACACTTCAATTTACAACATTTAAGCACTTCAATTTACAACAT
*
32206772 TTAAACACTTCAATTTGCTTCACTTTAGCATCTCAATTAACAACATTTATACACCTCAATTATAG
66 TTAAACACTTCAATTTGCTTCACTTTAACATCTCAATTAACAACATTTATACACCTCAATTATAG
*
32206837 CGATAAAACATCTCAATTTCTAGCAACTAT
131 CGATAAAACATCTCAATTTCCAGCAACTAT
*
32206867 ACACTTCAATTTGCAGTACTTAAACACTTCAATTTACAACATTTAAGCAGTTCAATTTACAACAT
1 ACACTTCAATTTGCAGTACTTAAACACTTCAATTTACAACATTTAAGCACTTCAATTTACAACAT
32206932 TTAAACACTTCAATTT
66 TTAAACACTTCAATTT
32206948 ACAACATTTA
Statistics
Matches: 381, Mismatches: 19, Indels: 3
0.95 0.05 0.01
Matches are distributed among these distances:
160 332 0.87
161 49 0.13
ACGTcount: A:0.38, C:0.24, G:0.05, T:0.33
Consensus pattern (160 bp):
ACACTTCAATTTGCAGTACTTAAACACTTCAATTTACAACATTTAAGCACTTCAATTTACAACAT
TTAAACACTTCAATTTGCTTCACTTTAACATCTCAATTAACAACATTTATACACCTCAATTATAG
CGATAAAACATCTCAATTTCCAGCAACTAT
Found at i:32206998 original size:46 final size:46
Alignment explanation
Indices: 32206129--32207013 Score: 516
Period size: 46 Copynumber: 19.3 Consensus size: 46
32206119 TTTCAGCAAC
* * *
32206129 TAAACAATTCAATTTGCAGCACTTTAACACTTCAATTTGCAGCACTT
1 TAAACACTTCAATTTGCAGCACTTTAACACTTCAATTTACAACA-TT
* ** *
32206176 TTAACACTTCAATTTATAGCA-TTTAAACACTTCAATTTGCAGTAC-TT
1 TAAACACTTCAATTTGCAGCACTTT-AACACTTCAATTTACA--ACATT
** * * * * *
32206223 T-AACA-TCTCAATTAACAACA-TTTATACTCCTCAA-TTATAGCGA--
1 TAAACACT-TCAATTTGCAGCACTTTA-ACACTTCAATTTACAAC-ATT
* * * * ** *
32206266 TAAAAAATCTCAATTT-CTAGCAAC-TAAACACTTCAATTTGCAGTACT
1 TAAACACT-TCAATTTGC-AGC-ACTTTAACACTTCAATTTACAACATT
* ** * *
32206313 TAAACACTTCAATTTACAAAAATTTAAACACTTTAATTTACAACATT
1 TAAACACTTCAATTTGCAGCACTTT-AACACTTCAATTTACAACATT
* *
32206360 CAAACACTTCAATTTGCAGCATTTTAACACTTCAATTTACAACATT
1 TAAACACTTCAATTTGCAGCACTTTAACACTTCAATTTACAACATT
* * *
32206406 TAAACACTTCAATTTGTAGCACTTTAACACTTCAATTTGCAGCACTT
1 TAAACACTTCAATTTGCAGCACTTTAACACTTCAATTTACAACA-TT
* * *
32206453 TAAACACTTCAATTTGCCGCACTTTAACACCTCAATTAACAACATT
1 TAAACACTTCAATTTGCAGCACTTTAACACTTCAATTTACAACATT
* * * ** * * **
32206499 TATACACCTCAA-TTACAGCGA-TAAAACA-TCTCAATTTCCAGCAAC
1 TAAACACTTCAATTTGCAGC-ACTTTAACACT-TCAATTTACAACATT
* *
32206544 TAAACACTTCAATTTGCAGTACTTAAACACTTCAATTTACAACATT
1 TAAACACTTCAATTTGCAGCACTTTAACACTTCAATTTACAACATT
* * * * **
32206590 TAAGCACTTCAATTTACAACA-TTTAAACACTTCAATTTGCTTCACTT
1 TAAACACTTCAATTTGCAGCACTTT-AACACTTCAATTTACAACA-TT
** * * * * *
32206637 T-AACA-TCTCAATTAACAACA-TTTATACACCT-AAATTATAGCGA-T
1 TAAACACT-TCAATTTGCAGCACTTTA-ACACTTCAATTTACAAC-ATT
* * * * ** *
32206681 AAAACA-TCTCAATTTCCAGCAACTAT-ACACTTCAATTTGCAGTACT
1 TAAACACT-TCAATTTGCAGC-ACTTTAACACTTCAATTTACAACATT
* *
32206727 TAAACACTTCAATTTACAACA-TTTAAGCACTTCAATTTACAACATT
1 TAAACACTTCAATTTGCAGCACTTTAA-CACTTCAATTTACAACATT
** * *
32206773 TAAACACTTCAATTTGCTTCACTTTAGCA-TCTCAATTAACAACATT
1 TAAACACTTCAATTTGCAGCACTTTAACACT-TCAATTTACAACATT
* * ** * **
32206819 TATACACCTCAATTAT--AGCGA-TAAAACA-TCTCAATTT-CTAGCAAC
1 TAAACACTTCAATT-TGCAGC-ACTTTAACACT-TCAATTTAC-AACATT
* * *
32206864 TATACACTTCAATTTGCAGTACTTAAACACTTCAATTTACAACATT
1 TAAACACTTCAATTTGCAGCACTTTAACACTTCAATTTACAACATT
* * * *
32206910 TAAGCAGTTCAATTTACAACA-TTTAAACACTTCAATTTACAACATT
1 TAAACACTTCAATTTGCAGCACTTT-AACACTTCAATTTACAACATT
*
32206956 TAAACACTTCAATTTGCAGCACTTTAACA-TCTCAATTAACAACATT
1 TAAACACTTCAATTTGCAGCACTTTAACACT-TCAATTTACAACATT
*
32207002 TGAACACTTCAA
1 TAAACACTTCAA
32207014 GTTGTATTCA
Statistics
Matches: 648, Mismatches: 140, Indels: 101
0.73 0.16 0.11
Matches are distributed among these distances:
43 2 0.00
44 9 0.01
45 121 0.19
46 379 0.58
47 136 0.21
49 1 0.00
ACGTcount: A:0.38, C:0.23, G:0.05, T:0.34
Consensus pattern (46 bp):
TAAACACTTCAATTTGCAGCACTTTAACACTTCAATTTACAACATT
Found at i:32209651 original size:20 final size:19
Alignment explanation
Indices: 32209608--32209647 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
32209598 GGAAAAAAAA
32209608 TTAGGGATTTGGGGAAATT
1 TTAGGGATTTGGGGAAATT
* *
32209627 TTAGGTATTTGGGGGAATT
1 TTAGGGATTTGGGGAAATT
32209646 TT
1 TT
32209648 TAGGAGAAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.23, C:0.00, G:0.35, T:0.42
Consensus pattern (19 bp):
TTAGGGATTTGGGGAAATT
Found at i:32210549 original size:7 final size:7
Alignment explanation
Indices: 32210539--32210595 Score: 55
Period size: 7 Copynumber: 8.3 Consensus size: 7
32210529 ATAAACTCTA
32210539 AACCCTT
1 AACCCTT
32210546 AACCCTT
1 AACCCTT
32210553 AACCCTT
1 AACCCTT
*
32210560 AACCCCT
1 AACCCTT
32210567 AACACC-T
1 AAC-CCTT
*
32210574 AAACCTT
1 AACCCTT
* *
32210581 CACCC-C
1 AACCCTT
32210587 AACCCTT
1 AACCCTT
32210594 AA
1 AA
32210596 ACCATAAATC
Statistics
Matches: 40, Mismatches: 7, Indels: 6
0.75 0.13 0.11
Matches are distributed among these distances:
6 6 0.15
7 32 0.80
8 2 0.05
ACGTcount: A:0.33, C:0.46, G:0.00, T:0.21
Consensus pattern (7 bp):
AACCCTT
Found at i:32210569 original size:21 final size:21
Alignment explanation
Indices: 32210530--32210598 Score: 70
Period size: 21 Copynumber: 3.3 Consensus size: 21
32210520 TCATAAAATA
* *
32210530 TAAACTCTAAACCCTTAACCCT
1 TAAAC-CTTAACCCCTAACCCT
*
32210552 TAACCCTTAACCCCTAACACC-
1 TAAACCTTAACCCCTAAC-CCT
*
32210573 TAAACCTTCACCCC-AACCCT
1 TAAACCTTAACCCCTAACCCT
32210593 TAAACC
1 TAAACC
32210599 ATAAATCATA
Statistics
Matches: 40, Mismatches: 5, Indels: 6
0.78 0.10 0.12
Matches are distributed among these distances:
19 2 0.05
20 9 0.22
21 23 0.57
22 6 0.15
ACGTcount: A:0.35, C:0.43, G:0.00, T:0.22
Consensus pattern (21 bp):
TAAACCTTAACCCCTAACCCT
Found at i:32210608 original size:7 final size:7
Alignment explanation
Indices: 32210593--32210709 Score: 58
Period size: 7 Copynumber: 16.4 Consensus size: 7
32210583 CCCCAACCCT
32210593 TAAACCA
1 TAAACCA
*
32210600 TAAATCA
1 TAAACCA
32210607 TAAACCA
1 TAAACCA
* *
32210614 TAATCCC
1 TAAACCA
32210621 TAAACACA
1 TAAAC-CA
* *
32210629 TAATCTA
1 TAAACCA
*
32210636 TAAACCT
1 TAAACCA
*
32210643 TAAACTA
1 TAAACCA
*
32210650 GT-AACTCC
1 -TAAAC-CA
*
32210658 TAAACCT
1 TAAACCA
*
32210665 TAAACCC
1 TAAACCA
*
32210672 CAAACCA
1 TAAACCA
*
32210679 TATACTC-
1 TAAAC-CA
32210686 TAAACCA
1 TAAACCA
*
32210693 TAAACCC
1 TAAACCA
*
32210700 TAAACTA
1 TAAACCA
32210707 TAA
1 TAA
32210710 TGATAATTAA
Statistics
Matches: 79, Mismatches: 25, Indels: 12
0.68 0.22 0.10
Matches are distributed among these distances:
6 1 0.01
7 68 0.86
8 10 0.13
ACGTcount: A:0.48, C:0.28, G:0.01, T:0.23
Consensus pattern (7 bp):
TAAACCA
Found at i:32210690 original size:14 final size:14
Alignment explanation
Indices: 32210593--32210709 Score: 65
Period size: 14 Copynumber: 8.2 Consensus size: 14
32210583 CCCCAACCCT
* *
32210593 TAAACCATAAATCA
1 TAAACCCTAAACCA
* * *
32210607 TAAACCATAATCCC
1 TAAACCCTAAACCA
* * *
32210621 TAAACACATAATCTA
1 TAAAC-CCTAAACCA
* *
32210636 TAAACCTTAAACTA
1 TAAACCCTAAACCA
*
32210650 GT-AACTCCTAAACCT
1 -TAAAC-CCTAAACCA
*
32210665 TAAACCCCAAACCA
1 TAAACCCTAAACCA
* *
32210679 TATACTCTAAACCA
1 TAAACCCTAAACCA
*
32210693 TAAACCCTAAACTA
1 TAAACCCTAAACCA
32210707 TAA
1 TAA
32210710 TGATAATTAA
Statistics
Matches: 81, Mismatches: 18, Indels: 8
0.76 0.17 0.07
Matches are distributed among these distances:
14 59 0.73
15 22 0.27
ACGTcount: A:0.48, C:0.28, G:0.01, T:0.23
Consensus pattern (14 bp):
TAAACCCTAAACCA
Found at i:32211090 original size:40 final size:40
Alignment explanation
Indices: 32211015--32211119 Score: 104
Period size: 40 Copynumber: 2.6 Consensus size: 40
32211005 TGTTTGTGGG
* ** * *
32211015 GTTTTTCAAAAAGCGCCGCTAATGCTTTATTTATAGTAGC
1 GTTTTTCAAAAACCGCCGCTAATGCTCGATCTATAGCAGC
* * *
32211055 GTTTTTCAAGAACCGCCGCTACTGCTCGATCTATAGCGGC
1 GTTTTTCAAAAACCGCCGCTAATGCTCGATCTATAGCAGC
* *
32211095 GTTTTTTGAAAAA-CACCGCTAATGC
1 G-TTTTTCAAAAACCGCCGCTAATGC
32211120 CACTAAAGCT
Statistics
Matches: 52, Mismatches: 12, Indels: 2
0.79 0.18 0.03
Matches are distributed among these distances:
40 43 0.83
41 9 0.17
ACGTcount: A:0.26, C:0.23, G:0.19, T:0.32
Consensus pattern (40 bp):
GTTTTTCAAAAACCGCCGCTAATGCTCGATCTATAGCAGC
Found at i:32211293 original size:40 final size:40
Alignment explanation
Indices: 32211167--32211295 Score: 125
Period size: 40 Copynumber: 3.2 Consensus size: 40
32211157 ATTTTTTTGT
*** * * *
32211167 GGCGTTTTTCAAAAAATGCCGCTAATAG-TTGACCTATAGC
1 GGCGTTTTTCAAAAAGCACCGCTAAT-GCTCGATCTACAGC
* * * *
32211207 AGCGTTTTTCAAAAAGCGCCGCTAATGCTCGATTTATAGC
1 GGCGTTTTTCAAAAAGCACCGCTAATGCTCGATCTACAGC
* * *
32211247 GACGTTTTTCAAAAAGCACCGTTAATGCTCGATCTACAGT
1 GGCGTTTTTCAAAAAGCACCGCTAATGCTCGATCTACAGC
32211287 GGCGTTTTT
1 GGCGTTTTT
32211296 TTATCCAAAC
Statistics
Matches: 74, Mismatches: 14, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
39 1 0.01
40 73 0.99
ACGTcount: A:0.27, C:0.21, G:0.20, T:0.32
Consensus pattern (40 bp):
GGCGTTTTTCAAAAAGCACCGCTAATGCTCGATCTACAGC
Found at i:32216731 original size:43 final size:43
Alignment explanation
Indices: 32216595--32216746 Score: 143
Period size: 43 Copynumber: 3.5 Consensus size: 43
32216585 TAGGATTTCT
* * *
32216595 GATATGTGATTTCGTGTAAGACCAC-GTCCAGGACATTGGCATC
1 GATATTTGATTTCATGTAAGACC-CTGTCTAGGACATTGGCATC
* * * *
32216638 GAT-TTGAGATTTACGTGTAAGACCATGTCT-GAGAC-TTCAGCATC
1 GATATT-TGATTT-CATGTAAGACCCTGTCTAG-GACATT-GGCATC
*
32216682 G-TATTTGATTTCATGTAAGACCCTGTCTAGGACAGTGGCATC
1 GATATTTGATTTCATGTAAGACCCTGTCTAGGACATTGGCATC
*
32216724 GATATTTGATTACATGTAAGACC
1 GATATTTGATTTCATGTAAGACC
32216747 ACGTCTGGGA
Statistics
Matches: 89, Mismatches: 11, Indels: 18
0.75 0.09 0.15
Matches are distributed among these distances:
42 25 0.28
43 39 0.44
44 25 0.28
ACGTcount: A:0.27, C:0.18, G:0.23, T:0.32
Consensus pattern (43 bp):
GATATTTGATTTCATGTAAGACCCTGTCTAGGACATTGGCATC
Done.