Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102776486
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2328156 characters in sequence are not A, C, G, or T
File 99 of 325
Found at i:32221302 original size:170 final size:170
Alignment explanation
Indices: 32220844--32221386 Score: 714
Period size: 170 Copynumber: 3.2 Consensus size: 170
32220834 AAAGTAGCAA
* * * *
32220844 GAGTCTTATCTTTCTAAGGTAGCAAGAAAGCAGACTGAAGATCTTATCTCCGTGAAGTTGCAATG
1 GAGTCTTATCTTTCTGAGGTAGCAAGAAAACAGACTGAAGATCTTATCTCCCTGAAGTTGCAGTG
* * * * *
32220909 GAGTAGATCAAAGATGGTGAATCTTATCTCCATTTATCGAAAATGGAG-TAGATTT-TACCACCA
66 GAGCAGATCGAAGATGGCGAATCTTATCTCCATGTATCGAAAATGGAGCT-GATTTAAACCACCA
* *
32220972 GCCTTATCTCTTTGAGGTAGCAAGAGAGTAGGTTGAAGAAT
130 GCCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAGAAT
* *
32221013 GAGTCTTATCTTTCTGAGGTAGCAAGAAAGCAGATTGATGATTGAAGATCTTATCTCCCTGAAGT
1 GAGTCTTATCTTTCTGAGGTAGCAAG-AA--A-A--CA-GACTGAAGATCTTATCTCCCTGAAGT
* *
32221078 TGCAGCGGAGCAGATCGAAGATGGCGAATCTTATCTCCATGTATCGACAATGGAGCTGATTTAAA
59 TGCAGTGGAGCAGATCGAAGATGGCGAATCTTATCTCCATGTATCGAAAATGGAGCTGATTTAAA
* * *
32221143 CCACCAACCTTATCTCTCTGAGGTAGAAAGAGAGCATGTTGAAGAAT
124 CCACCAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAGAAT
* *
32221190 AAGTCTTATCTTTCTGAGGTAGCAAGAAAACAGACTGAAGATCTTATCTCCTTGAAGTTGCAGTG
1 GAGTCTTATCTTTCTGAGGTAGCAAGAAAACAGACTGAAGATCTTATCTCCCTGAAGTTGCAGTG
** ** *
32221255 GAGCAGATCGAAGATGGCGAATCTTATCTCCATGTATCGGGAATGGAGCAAATTTAAGCCACCAG
66 GAGCAGATCGAAGATGGCGAATCTTATCTCCATGTATCGAAAATGGAGCTGATTTAAACCACCAG
* *
32221320 CCTTATCTCTCTGCGATAGCAAGAGAGCAGGTTGAAGAATT
131 CCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAGAA-T
* *
32221361 GAGTTTTATC-TTCTTGAGGAAGCAAG
1 GAGTCTTATCTTTC-TGAGGTAGCAAG
32221387 GAAGCAAATT
Statistics
Matches: 327, Mismatches: 36, Indels: 20
0.85 0.09 0.05
Matches are distributed among these distances:
169 25 0.08
170 129 0.39
171 21 0.06
172 1 0.00
173 1 0.00
174 1 0.00
175 1 0.00
176 79 0.24
177 69 0.21
ACGTcount: A:0.31, C:0.17, G:0.24, T:0.28
Consensus pattern (170 bp):
GAGTCTTATCTTTCTGAGGTAGCAAGAAAACAGACTGAAGATCTTATCTCCCTGAAGTTGCAGTG
GAGCAGATCGAAGATGGCGAATCTTATCTCCATGTATCGAAAATGGAGCTGATTTAAACCACCAG
CCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAGAAT
Found at i:32221526 original size:175 final size:176
Alignment explanation
Indices: 32220879--32221567 Score: 681
Period size: 170 Copynumber: 3.9 Consensus size: 176
32220869 GAAAGCAGAC
* ** * * * *
32220879 TGAAGATCTTATCTCCGTGAAGTTGCAATGGAGTAGATCAAAGATGGTGAATCTTATCTCCATTT
1 TGAAGATCTTATCTCCCTGAAGTTGCAGCGGAGCAGATCGAAGATGGCGAATCTTATCTCCATGT
* * * * * * * *
32220944 ATCGAAAATGGAGTAGATTTTA-CCACCAGCCTTATCTCTTTGAGGTAGCAAGAGAGTAGGTTGA
66 ATAG-CAATGGAGCAGATTTAAGCCACCAGACTTATCTCTCTGAGGAAGCAAGAGAGCAGGTTGA
* * *
32221008 AGAATGAGTCTTATCTTTCTGAGGTAGCAAGAAAGCAGATTGATGAT
130 AGAATGAGTCTTATCTTTCTGAGGTAGCAAGGAAGCAAATTGAAGAT
32221055 TGAAGATCTTATCTCCCTGAAGTTGCAGCGGAGCAGATCGAAGATGGCGAATCTTATCTCCATGT
1 TGAAGATCTTATCTCCCTGAAGTTGCAGCGGAGCAGATCGAAGATGGCGAATCTTATCTCCATGT
* * * * * *
32221120 ATCGACAATGGAGCTGATTTAAACCACCA-ACCTTATCTCTCTGAGGTAGAAAGAGAGCATGTTG
66 ATAG-CAATGGAGCAGATTTAAGCCACCAGA-CTTATCTCTCTGAGGAAGCAAGAGAGCAGGTTG
* * *
32221184 AAGAATAAGTCTTATCTTTCTGAGGTAGCAA-G-A--AAA---CAGAC
129 AAGAATGAGTCTTATCTTTCTGAGGTAGCAAGGAAGCAAATTGAAGAT
* *
32221225 TGAAGATCTTATCTCCTTGAAGTTGCAGTGGAGCAGATCGAAGATGGCGAATCTTATCTCCATGT
1 TGAAGATCTTATCTCCCTGAAGTTGCAGCGGAGCAGATCGAAGATGGCGAATCTTATCTCCATGT
* * * * *
32221290 ATCGGGAATGGAGCAAATTTAAGCCACCAGCCTTATCTCTCTG-CGATAGCAAGAGAGCAGGTTG
66 AT-AGCAATGGAGCAGATTTAAGCCACCAGACTTATCTCTCTGAGGA-AGCAAGAGAGCAGGTTG
* *
32221354 AAGAATTGAGTTTTATC-TTCTTGAGGAAGCAAGGAAGCAAATTGAAGAT
129 AAGAA-TGAGTCTTATCTTTC-TGAGGTAGCAAGGAAGCAAATTGAAGAT
* * ** * * * *
32221403 TAAAGATTTTATCTCCCT-AAGCAGTAGCGGAGCAGATTGAA-A-GGCGGATCTTATGTCCATGT
1 TGAAGATCTTATCTCCCTGAAGTTGCAGCGGAGCAGATCGAAGATGGCGAATCTTATCTCCATGT
* * * * * * *
32221465 ATAAGCAATGGAGCAGATTTTAGCCACTAGATTTATCTTTTTGAGGAAGTAAGAAAGCAGGTTG-
66 AT-AGCAATGGAGCAGATTTAAGCCACCAGACTTATCTCTCTGAGGAAGCAAGAGAGCAGGTTGA
* * *
32221529 -GCAATTGTAGTCTCATCTTCCTGAAGTAGCAAGGAAGCA
130 AG-AA-TG-AGTCTTATCTTTCTGAGGTAGCAAGGAAGCA
32221568 GACTGATTGT
Statistics
Matches: 428, Mismatches: 67, Indels: 37
0.80 0.13 0.07
Matches are distributed among these distances:
169 1 0.00
170 122 0.29
171 20 0.05
172 1 0.00
173 4 0.01
174 5 0.01
175 93 0.22
176 81 0.19
177 83 0.19
178 18 0.04
ACGTcount: A:0.31, C:0.17, G:0.24, T:0.28
Consensus pattern (176 bp):
TGAAGATCTTATCTCCCTGAAGTTGCAGCGGAGCAGATCGAAGATGGCGAATCTTATCTCCATGT
ATAGCAATGGAGCAGATTTAAGCCACCAGACTTATCTCTCTGAGGAAGCAAGAGAGCAGGTTGAA
GAATGAGTCTTATCTTTCTGAGGTAGCAAGGAAGCAAATTGAAGAT
Found at i:32221560 original size:346 final size:345
Alignment explanation
Indices: 32220845--32221611 Score: 899
Period size: 346 Copynumber: 2.2 Consensus size: 345
32220835 AAGTAGCAAG
* *
32220845 AGTCTTATCTTTCT-AAGGTAGCAAGAAAGCAGACTGAAGATCTTATCTCCGTGAAGTTGCAATG
1 AGTCTTATCTTTCTGAA-GTAGCAAGAAAGCAGACTGAAGATCTTATCTCCTTGAAGTTGCAGTG
* * * * * * *
32220909 GAGTAGATCAAAGATGGTGAATCTTATCTCCATTTATCGAAAATGGAGTAGATTTTACCACCAGC
65 GAGCAGATCGAAGATGGCGAATCTTATCTCCATGTATCGAAAATGGAGCAAATTTAACCACCAGC
* * * *
32220974 CTTATCTCTTTGAGGTAGCAAGAGAGTAGGTTGAAGAATGAGTCTTATCTTTCTGAGGTAGCAAG
130 CTTATCTCTCTGAGATAGCAAGAGAGCAGGTTGAAGAATGAGTCTTATCTTTCTGAGGAAGCAAG
* * * **
32221039 AAAGCAGATTGATGATTGAAGATCTTATCTCCCTGAAGTTGCAGCGGAGCAGATCGAAGATGGCG
195 AAAGCAAATTGAAGATTAAAGATCTTATCTCCCTGAAGCAGCAGCGGAGCAGATCGAAGATGGCG
* * *
32221104 AATCTTATCTCCATGTATCGACAATGGAGCTGATTTAAACCACCAACCTTATCTCTCTGAGGTAG
260 AATCTTATCTCCATGTATAGACAATGGAGCAGATTTAAACCACCAACCTTATCTCTCTGAGGAAG
* *
32221169 AAAGAGAGCATGTTGAAGAATA
325 AAAGAAAGCAGGTTG-AGAATA
* *
32221191 AGTCTTATCTTTCTGAGGTAGCAAGAAAACAGACTGAAGATCTTATCTCCTTGAAGTTGCAGTGG
1 AGTCTTATCTTTCTGAAGTAGCAAGAAAGCAGACTGAAGATCTTATCTCCTTGAAGTTGCAGTGG
**
32221256 AGCAGATCGAAGATGGCGAATCTTATCTCCATGTATCGGGAATGGAGCAAATTTAAGCCACCAGC
66 AGCAGATCGAAGATGGCGAATCTTATCTCCATGTATCGAAAATGGAGCAAATTTAA-CCACCAGC
* *
32221321 CTTATCTCTCTGCGATAGCAAGAGAGCAGGTTGAAGAATTGAGTTTTATC-TTCTTGAGGAAGCA
130 CTTATCTCTCTGAGATAGCAAGAGAGCAGGTTGAAGAA-TGAGTCTTATCTTTC-TGAGGAAGCA
* * * *
32221385 AGGAAGCAAATTGAAGATTAAAGATTTTATCTCCCT-AAGCAGTAGCGGAGCAGATTGAA-A-GG
193 AGAAAGCAAATTGAAGATTAAAGATCTTATCTCCCTGAAGCAGCAGCGGAGCAGATCGAAGATGG
* * * * * * * *
32221447 CGGATCTTATGTCCATGTATA-AGCAATGGAGCAGATTTTAGCCACTAGA-TTTATCTTTTTGAG
258 CGAATCTTATCTCCATGTATAGA-CAATGGAGCAGATTTAAACCACCA-ACCTTATCTCTCTGAG
* *
32221510 GAAGTAAGAAAGCAGGTTG-GCAATTGT
321 GAAGAAAGAAAGCAGGTTGAG-AA-T-A
* * * * * ***
32221537 AGTCTCATCTTCCTGAAGTAGCAAGGAAGCAGACTG-A-TTGTTATCTCCTT-AAGGAAACAGTG
1 AGTCTTATCTTTCTGAAGTAGCAAGAAAGCAGACTGAAGATCTTATCTCCTTGAA-GTTGCAGTG
32221599 GAGCAGATCGAAG
65 GAGCAGATCGAAG
32221612 TCGATGATTT
Statistics
Matches: 358, Mismatches: 53, Indels: 22
0.83 0.12 0.05
Matches are distributed among these distances:
343 3 0.01
344 33 0.09
345 68 0.19
346 139 0.39
347 65 0.18
348 50 0.14
ACGTcount: A:0.32, C:0.17, G:0.24, T:0.28
Consensus pattern (345 bp):
AGTCTTATCTTTCTGAAGTAGCAAGAAAGCAGACTGAAGATCTTATCTCCTTGAAGTTGCAGTGG
AGCAGATCGAAGATGGCGAATCTTATCTCCATGTATCGAAAATGGAGCAAATTTAACCACCAGCC
TTATCTCTCTGAGATAGCAAGAGAGCAGGTTGAAGAATGAGTCTTATCTTTCTGAGGAAGCAAGA
AAGCAAATTGAAGATTAAAGATCTTATCTCCCTGAAGCAGCAGCGGAGCAGATCGAAGATGGCGA
ATCTTATCTCCATGTATAGACAATGGAGCAGATTTAAACCACCAACCTTATCTCTCTGAGGAAGA
AAGAAAGCAGGTTGAGAATA
Found at i:32231261 original size:25 final size:25
Alignment explanation
Indices: 32231227--32231321 Score: 136
Period size: 25 Copynumber: 3.8 Consensus size: 25
32231217 CTCTTTTAAT
*
32231227 AACTGGGGCAAAGCCCTTTTTGATA
1 AACTGGGGCAAAGCCCTTTTCGATA
32231252 AACTGGGGCAAAGCCCTTTTCGATA
1 AACTGGGGCAAAGCCCTTTTCGATA
* * * *
32231277 AACCGGAGCAAAGTCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCGATA
*
32231302 AACTGGGGCATAGCCCTTTT
1 AACTGGGGCAAAGCCCTTTT
32231322 ATCACTTCCT
Statistics
Matches: 61, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 61 1.00
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.26
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTCGATA
Found at i:32231554 original size:27 final size:27
Alignment explanation
Indices: 32231524--32231766 Score: 281
Period size: 27 Copynumber: 9.0 Consensus size: 27
32231514 GGGGCAAAAT
* * *
32231524 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
32231551 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
32231578 GATATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
32231605 GGTAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * ** * *
32231632 AGTAATTCAAATCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
32231659 GGTAATTCTACCTTA-TAGGGTTATTTC
1 GGTAATTCTACCCTACAAGGG-TATTTC
*
32231686 AGTAATTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
** *
32231713 AATAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
32231740 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
32231767 AATATTTTAC
Statistics
Matches: 185, Mismatches: 29, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
26 3 0.02
27 178 0.96
28 4 0.02
ACGTcount: A:0.26, C:0.20, G:0.19, T:0.35
Consensus pattern (27 bp):
GGTAATTCTACCCTACAAGGGTATTTC
Found at i:32231626 original size:54 final size:54
Alignment explanation
Indices: 32231525--32231766 Score: 315
Period size: 54 Copynumber: 4.5 Consensus size: 54
32231515 GGGCAAAATG
* * *
32231525 GTAATTTTACCCCACAAGGGTATCTCGGTAATTCTACCCTACAGGGGTATTTC-
1 GTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCA
* *
32231578 GATATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTATAGGGGTATTTCA
1 G-TAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCA
* ** * * * * *
32231633 GTAATTCAAATCTATAGGGGTATTTCGGTAATTCTACCTTATAGGGTTATTTCA
1 GTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCA
** *
32231687 GTAATTCTACCCTACAAGGGTATTTCAATAATTCTACCCTACAGGGGTATTTCG
1 GTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCA
*
32231741 GTAATTCTACCCTACAGGGGTATTTC
1 GTAATTCTACCCTACAAGGGTATTTC
32231767 AATATTTTAC
Statistics
Matches: 162, Mismatches: 25, Indels: 3
0.85 0.13 0.02
Matches are distributed among these distances:
53 1 0.01
54 160 0.99
55 1 0.01
ACGTcount: A:0.26, C:0.20, G:0.18, T:0.36
Consensus pattern (54 bp):
GTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCA
Found at i:32231767 original size:81 final size:81
Alignment explanation
Indices: 32231525--32231767 Score: 324
Period size: 81 Copynumber: 3.0 Consensus size: 81
32231515 GGGCAAAATG
* * * * * *
32231525 GTAATTTTACCCCACAAGGGTATCTCGGTAATTCTACCCTACAGGGGTATTTCGATATTTCTACC
1 GTAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACC
* *
32231590 CTACAAGGGTATTTCG
66 CTACAGGGGTATTTCA
* * * ** *
32231606 GTAATTCTACCCTATAGGGGTATTTCAGTAATTCAAATCTATAGGGGTATTTCGGTAATTCTACC
1 GTAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACC
* * *
32231671 TTATAGGGTTATTTCA
66 CTACAGGGGTATTTCA
*
32231687 GTAATTCTACCCTACAAGGGTATTTCAATAATTCTACCCTACAGGGGTATTTCGGTAATTCTACC
1 GTAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACC
32231752 CTACAGGGGTATTTCA
66 CTACAGGGGTATTTCA
32231768 ATATTTTACA
Statistics
Matches: 135, Mismatches: 27, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
81 135 1.00
ACGTcount: A:0.26, C:0.20, G:0.18, T:0.35
Consensus pattern (81 bp):
GTAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACC
CTACAGGGGTATTTCA
Found at i:32231816 original size:27 final size:26
Alignment explanation
Indices: 32231729--32231911 Score: 91
Period size: 27 Copynumber: 6.8 Consensus size: 26
32231719 TCTACCCTAC
* * ** *
32231729 AGGGGTATTTCGGTAATTCTACCCTAC
1 AGGGGTATTTCGATAATTTTA-CAAAT
*
32231756 AGGGGTATTTCAAT-ATTTTACAAAT
1 AGGGGTATTTCGATAATTTTACAAAT
* * *
32231781 CGAGAGTATTTCGATAATTTCACAAATT
1 AG-GGGTATTTCGATAATTTTACAAA-T
* * **
32231809 AGGGGTATTTTGGTAATTTTACAAGCC
1 AGGGGTATTTCGATAATTTTACAA-AT
* * * *
32231836 AGTGGTATTTTGGTAATTTTACAAACC
1 AGGGGTATTTCGATAATTTTACAAA-T
* *
32231863 AGGGGTATTT-TAGTAATTTTACAAACC
1 AGGGGTATTTCGA-TAATTTTACAAA-T
* * *
32231890 AGGGATATTTTGGTAATTTTAC
1 AGGGGTATTTCGATAATTTTAC
32231912 TGATCGAAGG
Statistics
Matches: 124, Mismatches: 25, Indels: 14
0.76 0.15 0.09
Matches are distributed among these distances:
25 3 0.02
26 15 0.12
27 104 0.84
28 2 0.02
ACGTcount: A:0.30, C:0.12, G:0.20, T:0.38
Consensus pattern (26 bp):
AGGGGTATTTCGATAATTTTACAAAT
Found at i:32231887 original size:81 final size:81
Alignment explanation
Indices: 32231795--32231975 Score: 229
Period size: 81 Copynumber: 2.2 Consensus size: 81
32231785 AGTATTTCGA
* * * *
32231795 TAATTTCACAAATTAGGGGTATTTTGGTAATTTTAC-AAGCCAGTGGTATTTTGGTAATTTTACA
1 TAATTTTACAAATCAGGGATATTTTGGTAATTTTACTAAGCCA-AGGTATTTTGGTAATTTTACA
*
32231859 AACCAGGGGTATTTTAG
65 AACCAAGGGTATTTTAG
* * * * **
32231876 TAATTTTACAAACCAGGGATATTTTGGTAATTTTACTGATCGAAGGTATTTTGGTAATTTTGTAA
1 TAATTTTACAAATCAGGGATATTTTGGTAATTTTACTAAGCCAAGGTATTTTGGTAATTTTACAA
32231941 ACCAAGGGTATTTTAG
66 ACCAAGGGTATTTTAG
*
32231957 TAATTTTATAAATCGAGGG
1 TAATTTTACAAATC-AGGG
32231976 TAAAACGATA
Statistics
Matches: 85, Mismatches: 13, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
81 78 0.92
82 7 0.08
ACGTcount: A:0.31, C:0.09, G:0.20, T:0.40
Consensus pattern (81 bp):
TAATTTTACAAATCAGGGATATTTTGGTAATTTTACTAAGCCAAGGTATTTTGGTAATTTTACAA
ACCAAGGGTATTTTAG
Found at i:32231925 original size:27 final size:27
Alignment explanation
Indices: 32231786--32231964 Score: 189
Period size: 27 Copynumber: 6.6 Consensus size: 27
32231776 CAAATCGAGA
* * * **
32231786 GTATTTCGATAATTTCACAAATTAGGG
1 GTATTTTGGTAATTTTACAAACCAGGG
* *
32231813 GTATTTTGGTAATTTTACAAGCCAGTG
1 GTATTTTGGTAATTTTACAAACCAGGG
32231840 GTATTTTGGTAATTTTACAAACCAGGG
1 GTATTTTGGTAATTTTACAAACCAGGG
*
32231867 GTATTTTAGTAATTTTACAAACCAGGG
1 GTATTTTGGTAATTTTACAAACCAGGG
* ** * *
32231894 ATATTTTGGTAATTTTACTGATC-GAAG
1 GTATTTTGGTAATTTTACAAACCAG-GG
** *
32231921 GTATTTTGGTAATTTTGTAAACCAAGG
1 GTATTTTGGTAATTTTACAAACCAGGG
*
32231948 GTATTTTAGTAATTTTA
1 GTATTTTGGTAATTTTA
32231965 TAAATCGAGG
Statistics
Matches: 124, Mismatches: 26, Indels: 4
0.81 0.17 0.03
Matches are distributed among these distances:
26 1 0.01
27 123 0.99
ACGTcount: A:0.30, C:0.09, G:0.20, T:0.41
Consensus pattern (27 bp):
GTATTTTGGTAATTTTACAAACCAGGG
Found at i:32231987 original size:27 final size:27
Alignment explanation
Indices: 32231956--32232247 Score: 341
Period size: 27 Copynumber: 10.8 Consensus size: 27
32231946 GGGTATTTTA
* *
32231956 GTAATTTTATAAATCGAGGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAATG
* * *
32231983 ATAATTCTGTAAATCGAGGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAATG
* *
32232010 ATAATTCTATAAGTCGAGGGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAATG
* *
32232037 GTAATTCTACAAATCGAGGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAATG
*
32232064 GTAATTCTGTAAATCGAGGGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAATG
* * * * *
32232091 GTAATTTTGTAAATTGAGAGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAATG
32232118 GTAATTCTATAAATCGAGGGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAATG
*
32232145 GTAATTCTATAAATTGAGGGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAATG
* * *
32232172 GTAACTCTGTAAGTCGAGGGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAATG
* * ***
32232199 GTAATTCTGTAAATCGATGGTACTTTG
1 GTAATTCTATAAATCGAGGGTAAAATG
* * *
32232226 GTAATTTTACAAATTGAGGGTA
1 GTAATTCTATAAATCGAGGGTA
32232248 TTTCAGTAAT
Statistics
Matches: 227, Mismatches: 38, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 227 1.00
ACGTcount: A:0.38, C:0.08, G:0.23, T:0.30
Consensus pattern (27 bp):
GTAATTCTATAAATCGAGGGTAAAATG
Found at i:32231999 original size:81 final size:81
Alignment explanation
Indices: 32231846--32232175 Score: 243
Period size: 81 Copynumber: 4.1 Consensus size: 81
32231836 AGTGGTATTT
* * * ****
32231846 TGGTAATTTTACAAACCAGGGGTATTTTAGTAATTTTACAAA-CCAGGGATATTTTGGTAATT-T
1 TGGTAATTTTATAAACCAAGGGTATTTTAGTAATTTTACAAATCGAGGG-TAAAACGGTAATTCT
* * ***
32231909 -TACTGATCGAAGGTATTT
65 GTA--AATCGAGGGTAAAA
* * *
32231927 TGGTAATTTTGTAAACCAAGGGTATTTTAGTAATTTTATAAATCGAGGGTAAAACGATAATTCTG
1 TGGTAATTTTATAAACCAAGGGTATTTTAGTAATTTTACAAATCGAGGGTAAAACGGTAATTCTG
32231992 TAAATCGAGGGTAAAA
66 TAAATCGAGGGTAAAA
* * * ** * *** * *
32232008 CGATAATTCTATAAGTCGAGGGTAAAATGGTAATTCTACAAATCGAGGGTAAAACGGTAATTCTG
1 TGGTAATTTTATAAACCAAGGGTATTTTAGTAATTTTACAAATCGAGGGTAAAACGGTAATTCTG
32232073 TAAATCGAGGGTAAAA
66 TAAATCGAGGGTAAAA
* *** * ***** * * * *
32232089 TGGTAATTTTGTAAATTGAGAGTAAAACGGTAATTCTATAAATCGAGGGTAAAATGGTAATTCTA
1 TGGTAATTTTATAAACCAAGGGTATTTTAGTAATTTTACAAATCGAGGGTAAAACGGTAATTCTG
*
32232154 TAAATTGAGGGTAAAA
66 TAAATCGAGGGTAAAA
32232170 TGGTAA
1 TGGTAA
32232176 CTCTGTAAGT
Statistics
Matches: 205, Mismatches: 41, Indels: 6
0.81 0.16 0.02
Matches are distributed among these distances:
81 197 0.96
82 6 0.03
83 2 0.01
ACGTcount: A:0.37, C:0.08, G:0.22, T:0.33
Consensus pattern (81 bp):
TGGTAATTTTATAAACCAAGGGTATTTTAGTAATTTTACAAATCGAGGGTAAAACGGTAATTCTG
TAAATCGAGGGTAAAA
Found at i:32234206 original size:23 final size:24
Alignment explanation
Indices: 32234166--32234215 Score: 100
Period size: 24 Copynumber: 2.1 Consensus size: 24
32234156 TTTGCTATCA
32234166 TTTTGAGTAAACATTTTTTATTCT
1 TTTTGAGTAAACATTTTTTATTCT
32234190 TTTTGAGTAAACATTTTTTATTCT
1 TTTTGAGTAAACATTTTTTATTCT
32234214 TT
1 TT
32234216 CCACGTTATT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.24, C:0.08, G:0.08, T:0.60
Consensus pattern (24 bp):
TTTTGAGTAAACATTTTTTATTCT
Found at i:32236191 original size:27 final size:27
Alignment explanation
Indices: 32236161--32236219 Score: 82
Period size: 27 Copynumber: 2.2 Consensus size: 27
32236151 CAAATTGTAA
32236161 AATTACCAAAGTACCCTCGATTTATAG
1 AATTACCAAAGTACCCTCGATTTATAG
****
32236188 AATTACCGTTTTACCCTCGATTTATAG
1 AATTACCAAAGTACCCTCGATTTATAG
32236215 AATTA
1 AATTA
32236220 TCGTAAAATT
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.34, C:0.20, G:0.10, T:0.36
Consensus pattern (27 bp):
AATTACCAAAGTACCCTCGATTTATAG
Found at i:32236256 original size:27 final size:27
Alignment explanation
Indices: 32236224--32236286 Score: 99
Period size: 27 Copynumber: 2.3 Consensus size: 27
32236214 GAATTATCGT
*
32236224 AAAATTACTGTTTTACCCTTGATTGAC
1 AAAATTACTGTTTTACCCTCGATTGAC
* *
32236251 AGAATTACTGTTTTACCCTCGATTTAC
1 AAAATTACTGTTTTACCCTCGATTGAC
32236278 AAAATTACT
1 AAAATTACT
32236287 AAAATACCCT
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.32, C:0.19, G:0.10, T:0.40
Consensus pattern (27 bp):
AAAATTACTGTTTTACCCTCGATTGAC
Found at i:32236284 original size:65 final size:63
Alignment explanation
Indices: 32236172--32236291 Score: 168
Period size: 65 Copynumber: 1.9 Consensus size: 63
32236162 ATTACCAAAG
* * * *
32236172 TACCCTCGATTTATAGAATTACCGTTTTACCCTCGATTTATAGAATTATCGTAAAATTACTGTTT
1 TACCCTCGATTGACAGAATTACCGTTTTACCCTCGATTTACAAAATTA-C-TAAAATTACTGTTT
* *
32236237 TACCCTTGATTGACAGAATTACTGTTTTACCCTCGATTTACAAAATTACTAAAAT
1 TACCCTCGATTGACAGAATTACCGTTTTACCCTCGATTTACAAAATTACTAAAAT
32236292 ACCCTTGGTT
Statistics
Matches: 49, Mismatches: 6, Indels: 2
0.86 0.11 0.04
Matches are distributed among these distances:
63 6 0.12
64 1 0.02
65 42 0.86
ACGTcount: A:0.32, C:0.19, G:0.10, T:0.39
Consensus pattern (63 bp):
TACCCTCGATTGACAGAATTACCGTTTTACCCTCGATTTACAAAATTACTAAAATTACTGTTT
Found at i:32236389 original size:80 final size:81
Alignment explanation
Indices: 32236278--32236484 Score: 258
Period size: 80 Copynumber: 2.6 Consensus size: 81
32236268 CTCGATTTAC
* **
32236278 AAAATTACTAAAATACCCTTGGTTTACAAAATTACCAAAATACCCTCGA-TCAGTAAAATTACCA
1 AAAATTACTAAAATACCCCTGGTTTGTAAAATTACCAAAATACCC-CGAGTCAGTAAAATTACCA
*
32236342 AAATACC-CTGGTCTGT
65 AAATACCACTAGTCTGT
* * **
32236358 AAAATTGCTAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCCTAGTTTGTAAAATTACCAA
1 AAAATTACTAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCCGAGTCAGTAAAATTACCAA
*
32236423 AATACCACTAGTTTGT
66 AATACCACTAGTCTGT
* * **
32236439 GAAATTACCAAAATA-CCCTCACTTTGTAAAATTACCAAAATACCCC
1 AAAATTACTAAAATACCCCT-GGTTTGTAAAATTACCAAAATACCCC
32236485 TAATTTACAA
Statistics
Matches: 110, Mismatches: 14, Indels: 5
0.85 0.11 0.04
Matches are distributed among these distances:
79 2 0.02
80 65 0.59
81 43 0.39
ACGTcount: A:0.41, C:0.23, G:0.08, T:0.28
Consensus pattern (81 bp):
AAAATTACTAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCCGAGTCAGTAAAATTACCAA
AATACCACTAGTCTGT
Found at i:32236595 original size:27 final size:27
Alignment explanation
Indices: 32236278--32236596 Score: 266
Period size: 27 Copynumber: 11.8 Consensus size: 27
32236268 CTCGATTTAC
* **
32236278 AAAATTACTAAAATACCCTTGGTTTAC
1 AAAATTACCAAAATACCCTTGGTTTGT
* * **
32236305 AAAATTACCAAAATACCCTCGATCAGT
1 AAAATTACCAAAATACCCTTGGTTTGT
*
32236332 AAAATTACCAAAATACCC-TGGTCTGT
1 AAAATTACCAAAATACCCTTGGTTTGT
* * *
32236358 AAAATTGCTAAAATACCCCTGGTTTGT
1 AAAATTACCAAAATACCCTTGGTTTGT
* *
32236385 AAAATTACCAAAATACCCCTAGTTTGT
1 AAAATTACCAAAATACCCTTGGTTTGT
*
32236412 AAAATTACCAAAATACCAC-TAGTTTGT
1 AAAATTACCAAAATACC-CTTGGTTTGT
* ***
32236439 GAAATTACCAAAATACCCTCACTTTGT
1 AAAATTACCAAAATACCCTTGGTTTGT
* ** **
32236466 AAAATTACCAAAATACCCCTAATTTAC
1 AAAATTACCAAAATACCCTTGGTTTGT
* * * *
32236493 AAAATTACAAAAATACACTTGACTTTCT
1 AAAATTACCAAAATACCCTTG-GTTTGT
* * **
32236521 AAAAATTA-TAGAAATACCATTGGTTTAC
1 -AAAATTACCA-AAATACCCTTGGTTTGT
**
32236549 AAAATTACTGAAATACCCTTGGTTTGT
1 AAAATTACCAAAATACCCTTGGTTTGT
* *
32236576 AAATTTACCAAAACACCCTTG
1 AAAATTACCAAAATACCCTTG
32236597 TAGGTTAAAA
Statistics
Matches: 239, Mismatches: 46, Indels: 14
0.80 0.15 0.05
Matches are distributed among these distances:
26 22 0.09
27 192 0.80
28 9 0.04
29 16 0.07
ACGTcount: A:0.41, C:0.21, G:0.08, T:0.30
Consensus pattern (27 bp):
AAAATTACCAAAATACCCTTGGTTTGT
Found at i:32236718 original size:27 final size:27
Alignment explanation
Indices: 32236627--32236718 Score: 123
Period size: 27 Copynumber: 3.4 Consensus size: 27
32236617 ACCCCTATTA
*
32236627 GGTAAAAAGACCGTAAAGCCCCTGTAG
1 GGTAAAATGACCGTAAAGCCCCTGTAG
* *
32236654 GGTAAAGTGACTGTAAAGCCCCTGTAG
1 GGTAAAATGACCGTAAAGCCCCTGTAG
* *
32236681 GGTAAAGTGACCGTAATA-CCCCTGTAT
1 GGTAAAATGACCGTAA-AGCCCCTGTAG
32236708 GGTAAAATGAC
1 GGTAAAATGAC
32236719 GAATATGCCC
Statistics
Matches: 58, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
27 57 0.98
28 1 0.02
ACGTcount: A:0.34, C:0.20, G:0.26, T:0.21
Consensus pattern (27 bp):
GGTAAAATGACCGTAAAGCCCCTGTAG
Found at i:32237565 original size:25 final size:25
Alignment explanation
Indices: 32237527--32237596 Score: 79
Period size: 25 Copynumber: 2.8 Consensus size: 25
32237517 AGGAAGTGCT
* * *
32237527 AAAAGGGCTATGCCCTAGTTTA-CTG
1 AAAAGGGCTTTGCCCAAGTTTATC-A
32237552 AAAAGGGCTTTGCCCAAGTTTATCA
1 AAAAGGGCTTTGCCCAAGTTTATCA
* *
32237577 AAAAGGGCTTTACCCCAGTT
1 AAAAGGGCTTTGCCCAAGTT
32237597 ATTAAAAGAG
Statistics
Matches: 39, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
25 38 0.97
26 1 0.03
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.27
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCAAGTTTATCA
Found at i:32237803 original size:42 final size:42
Alignment explanation
Indices: 32237744--32237835 Score: 148
Period size: 42 Copynumber: 2.2 Consensus size: 42
32237734 TAGTCTCCCC
* ** *
32237744 AAATGGGCTTGCATACATTCATTGGTATTTCATGTGATATTG
1 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
32237786 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
1 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
32237828 AAATGGGC
1 AAATGGGC
32237836 CTAAGGGCCA
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 46 1.00
ACGTcount: A:0.29, C:0.14, G:0.22, T:0.35
Consensus pattern (42 bp):
AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
Found at i:32241365 original size:60 final size:64
Alignment explanation
Indices: 32241264--32241425 Score: 208
Period size: 60 Copynumber: 2.6 Consensus size: 64
32241254 AGGGGAAGAA
* * *
32241264 GCCAAAGTGAAAACCCGCAAAGGGCGCTTTGAGGCCTAATAAAAATG-GAAAAG-ATAA-AG-G
1 GCCAAAGTGAAAACCCGCAAAGGGCGCTTTGAGACCTAATAAAAATGAAAAAAGAAAAAGAGAG
* *
32241324 GCCAAAGTGAAAACCCGCAGAGGGCGCTTTGAGA-CTCAATAAAATTGAAAAAAGAAAAAAAGAG
1 GCCAAAGTGAAAACCCGCAAAGGGCGCTTTGAGACCT-AATAAAAATGAAAAAAG--AAAAAGAG
32241388 AG
63 AG
*
32241390 GCCAAGGTGAAAACCCGCAAAGGGCGCTTTGAGACC
1 GCCAAAGTGAAAACCCGCAAAGGGCGCTTTGAGACC
32241426 AAAGGGGATT
Statistics
Matches: 87, Mismatches: 7, Indels: 9
0.84 0.07 0.09
Matches are distributed among these distances:
59 2 0.02
60 41 0.47
61 5 0.06
64 3 0.03
65 2 0.02
66 33 0.38
67 1 0.01
ACGTcount: A:0.43, C:0.19, G:0.27, T:0.12
Consensus pattern (64 bp):
GCCAAAGTGAAAACCCGCAAAGGGCGCTTTGAGACCTAATAAAAATGAAAAAAGAAAAAGAGAG
Found at i:32241439 original size:17 final size:18
Alignment explanation
Indices: 32241407--32241440 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
32241397 TGAAAACCCG
*
32241407 CAAAGGGCGCTTTGAGAC
1 CAAAGGGCGATTTGAGAC
32241425 CAAAGGG-GATTTGAGA
1 CAAAGGGCGATTTGAGA
32241441 TGAAAACCTG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 8 0.53
18 7 0.47
ACGTcount: A:0.32, C:0.15, G:0.35, T:0.18
Consensus pattern (18 bp):
CAAAGGGCGATTTGAGAC
Found at i:32243029 original size:170 final size:170
Alignment explanation
Indices: 32242495--32243211 Score: 859
Period size: 170 Copynumber: 4.2 Consensus size: 170
32242485 TTATGAAGTC
* * *
32242495 AGCAGATTTTA-CCACCAGCCTTATCTCTCTAAGGTAGTAAGAGAGCAGATTGAAGAATGAGTCT
1 AGCAGATTTAAGCCACCAGCCTTATCTCTCTAAGGTAGCAAGAGAGCAGGTTGAAGAATGAGTCT
* *
32242559 TATCTTTCTAAGGTAGCAAGAAAGCAGACTGAAGATCTTATCTCCCTGAAGTTGCAGCGGAGCAG
66 TATCTTTCTAAGGTAGCAAGAAAGCAAACTAAAGATCTTATCTCCCTGAAGTTGCAGCGGAGCAG
* * *
32242624 ATTGAAGATGGTGAATCTCATCTCCATGTATCAGCAATGG
131 ATTGAAGATGGCGAATCTTATCTCCATGTATCGGCAATGG
* * * *
32242664 AGCATATTTTA-CCACCAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTTAAGAATGAGTCT
1 AGCAGATTTAAGCCACCAGCCTTATCTCTCTAAGGTAGCAAGAGAGCAGGTTGAAGAATGAGTCT
* * * *
32242728 TGTCTTTCTGAGGTAGCAAGAAAGCAGACTGAAGATTGAAGATCTTATCTCCCTGAAGTTGCAGT
66 TATCTTTCTAAGGTAGCAAGAAAGCAAACT----A---AAGATCTTATCTCCCTGAAGTTGCAGC
* *
32242793 GGAGTAGATCGAAGATGGCGAATCTTATCTCCATGTATCGGCAATGG
124 GGAGCAGATTGAAGATGGCGAATCTTATCTCCATGTATCGGCAATGG
* * *
32242840 AGCAGATATAAGCCACCAGCTTTATCTCTCTAAGGTAGCAAGAGAGCAGGTTGAAGAATGAATCT
1 AGCAGATTTAAGCCACCAGCCTTATCTCTCTAAGGTAGCAAGAGAGCAGGTTGAAGAATGAGTCT
* *
32242905 TATCTTTCTGAGGTAGTAAGAAAGCAAACTAAAGATCTTATCTCCCTGAAGTTGCAGCGGAGCAG
66 TATCTTTCTAAGGTAGCAAGAAAGCAAACTAAAGATCTTATCTCCCTGAAGTTGCAGCGGAGCAG
* * * *
32242970 ATAGAATATGGCGAATCTTATCTCTATGTATTGGCAATGG
131 ATTGAAGATGGCGAATCTTATCTCCATGTATCGGCAATGG
* * * * *
32243010 AGCAGAGTTAAGCCACCAGCCTTATCTCTCTGAGATAGCAAGAGAGTAGGTTGAAGAATTGAGTT
1 AGCAGATTTAAGCCACCAGCCTTATCTCTCTAAGGTAGCAAGAGAGCAGGTTGAAGAA-TGAGTC
* * * * ** *
32243075 TTATCTTCCTAAGGTAACAAGGAAGTAGACAGAAGATTAAAGATTTTATCTCCCT-AAGCAGTAG
65 TTATCTTTCTAAGGTAGCAA-GAA--AG-C--AA-ACTAAAGATCTTATCTCCCTGAAGTTGCAG
* * *
32243139 CGGAGCAGATTGAA-A-GGCGGATCTTATCTCCATGTATTGGTAATGG
123 CGGAGCAGATTGAAGATGGCGAATCTTATCTCCATGTATCGGCAATGG
* * *
32243185 AGCAGATTTTAGCCACTAGACTTATCT
1 AGCAGATTTAAGCCACCAGCCTTATCT
32243212 TTTTCAGGAA
Statistics
Matches: 477, Mismatches: 55, Indels: 26
0.85 0.10 0.05
Matches are distributed among these distances:
169 87 0.18
170 120 0.25
171 20 0.04
172 3 0.01
173 1 0.00
174 2 0.00
175 52 0.11
176 77 0.16
177 97 0.20
178 18 0.04
ACGTcount: A:0.31, C:0.18, G:0.24, T:0.27
Consensus pattern (170 bp):
AGCAGATTTAAGCCACCAGCCTTATCTCTCTAAGGTAGCAAGAGAGCAGGTTGAAGAATGAGTCT
TATCTTTCTAAGGTAGCAAGAAAGCAAACTAAAGATCTTATCTCCCTGAAGTTGCAGCGGAGCAG
ATTGAAGATGGCGAATCTTATCTCCATGTATCGGCAATGG
Found at i:32246588 original size:25 final size:25
Alignment explanation
Indices: 32246543--32246590 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
32246533 ATTATAAATA
*
32246543 AAATAACATTAAAAAATAATAAACG
1 AAATAACATTAAAAAAGAATAAACG
* *
32246568 AAATAACATTTAATAAGAATAAA
1 AAATAACATTAAAAAAGAATAAA
32246591 ATTCATATGA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.67, C:0.06, G:0.04, T:0.23
Consensus pattern (25 bp):
AAATAACATTAAAAAAGAATAAACG
Found at i:32248859 original size:21 final size:22
Alignment explanation
Indices: 32248835--32248882 Score: 55
Period size: 21 Copynumber: 2.3 Consensus size: 22
32248825 CCATAAGGGT
* *
32248835 GTGTAG-GGCCTTCACACGGGC
1 GTGTAGTGGCCTCCACACGGAC
*
32248856 GTGT-GTGGCCTCCACATGGAC
1 GTGTAGTGGCCTCCACACGGAC
32248877 GTGTAG
1 GTGTAG
32248883 ACACCCACAC
Statistics
Matches: 22, Mismatches: 3, Indels: 3
0.79 0.11 0.11
Matches are distributed among these distances:
20 1 0.05
21 20 0.91
22 1 0.05
ACGTcount: A:0.15, C:0.25, G:0.38, T:0.23
Consensus pattern (22 bp):
GTGTAGTGGCCTCCACACGGAC
Found at i:32251672 original size:39 final size:39
Alignment explanation
Indices: 32251615--32251736 Score: 226
Period size: 39 Copynumber: 3.1 Consensus size: 39
32251605 GCATGATATT
32251615 TGGAAACATATCCGGACTTGAGGTCCGCAGGCTACGTGC
1 TGGAAACATATCCGGACTTGAGGTCCGCAGGCTACGTGC
**
32251654 TGGAAACATATCTAGACTTGAGGTCCGCAGGCTACGTGC
1 TGGAAACATATCCGGACTTGAGGTCCGCAGGCTACGTGC
32251693 TGGAAACATATCCGGACTTGAGGTCCGCAGGCTACGTGC
1 TGGAAACATATCCGGACTTGAGGTCCGCAGGCTACGTGC
32251732 TGGAA
1 TGGAA
32251737 TATATCTGGG
Statistics
Matches: 79, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 79 1.00
ACGTcount: A:0.25, C:0.24, G:0.30, T:0.21
Consensus pattern (39 bp):
TGGAAACATATCCGGACTTGAGGTCCGCAGGCTACGTGC
Found at i:32251771 original size:78 final size:78
Alignment explanation
Indices: 32251615--32251764 Score: 230
Period size: 78 Copynumber: 1.9 Consensus size: 78
32251605 GCATGATATT
* * *
32251615 TGGAAACATATCCGGACTTGAGGTCCGCAGGCTACGTGCTGGAAACATATCTAGACTTGAGGTCC
1 TGGAAACATATCCGGACTTGAGGTCCGCAGGCTACGTGCTGGAAACATATCTAGACCTAAAGTCC
32251680 GCAGGCTACGTGC
66 GCAGGCTACGTGC
* * *
32251693 TGGAAACATATCCGGACTTGAGGTCCGCAGGCTACGTGCTGG-AATATATCTGGGCCTAAAGTCC
1 TGGAAACATATCCGGACTTGAGGTCCGCAGGCTACGTGCTGGAAACATATCTAGACCTAAAGT-C
32251757 CGCAGGCT
65 CGCAGGCT
32251765 TTGTGCTAGT
Statistics
Matches: 65, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
77 14 0.22
78 51 0.78
ACGTcount: A:0.24, C:0.25, G:0.29, T:0.22
Consensus pattern (78 bp):
TGGAAACATATCCGGACTTGAGGTCCGCAGGCTACGTGCTGGAAACATATCTAGACCTAAAGTCC
GCAGGCTACGTGC
Found at i:32255628 original size:42 final size:43
Alignment explanation
Indices: 32255558--32255642 Score: 109
Period size: 42 Copynumber: 2.0 Consensus size: 43
32255548 GAGTTACACA
* *
32255558 GGCTGTTCACATGGGCGTGTGCCCCCTCCACACGGGTGTGTAG
1 GGCTGTTCACACGGGCGTGTGCCCCCTCCACACGGGCGTGTAG
*** *
32255601 GGCT-TTCACACGGGCGTGTGTGGCCTCCACATGGGCGTGTAG
1 GGCTGTTCACACGGGCGTGTGCCCCCTCCACACGGGCGTGTAG
32255643 ACACCCACAC
Statistics
Matches: 36, Mismatches: 6, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
42 32 0.89
43 4 0.11
ACGTcount: A:0.12, C:0.28, G:0.36, T:0.24
Consensus pattern (43 bp):
GGCTGTTCACACGGGCGTGTGCCCCCTCCACACGGGCGTGTAG
Found at i:32255631 original size:21 final size:21
Alignment explanation
Indices: 32255582--32255642 Score: 70
Period size: 21 Copynumber: 2.9 Consensus size: 21
32255572 GCGTGTGCCC
*
32255582 CCTCCACACGGGTGTGTAGGG
1 CCTCCACACGGGCGTGTAGGG
* *
32255603 CTTTCACACGGGCGTGT-GTGG
1 CCTCCACACGGGCGTGTAG-GG
*
32255624 CCTCCACATGGGCGTGTAG
1 CCTCCACACGGGCGTGTAG
32255643 ACACCCACAC
Statistics
Matches: 32, Mismatches: 6, Indels: 3
0.78 0.15 0.07
Matches are distributed among these distances:
20 1 0.03
21 30 0.94
22 1 0.03
ACGTcount: A:0.13, C:0.28, G:0.36, T:0.23
Consensus pattern (21 bp):
CCTCCACACGGGCGTGTAGGG
Found at i:32259139 original size:30 final size:30
Alignment explanation
Indices: 32259067--32259141 Score: 105
Period size: 30 Copynumber: 2.5 Consensus size: 30
32259057 TATAAGGATG
* * *
32259067 TTCAAAAGCTTGAGAAGACTCGTTATCTCA
1 TTCAAGAGCTTGGGAAGACTCGATATCTCA
*
32259097 TTCAAGAGCTTGGGAAGACTCGATATCTCC
1 TTCAAGAGCTTGGGAAGACTCGATATCTCA
*
32259127 TTCAAGATCTTGGGA
1 TTCAAGAGCTTGGGA
32259142 TTGAGAAGAC
Statistics
Matches: 40, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 40 1.00
ACGTcount: A:0.29, C:0.20, G:0.21, T:0.29
Consensus pattern (30 bp):
TTCAAGAGCTTGGGAAGACTCGATATCTCA
Found at i:32259185 original size:66 final size:66
Alignment explanation
Indices: 32259090--32259255 Score: 210
Period size: 66 Copynumber: 2.5 Consensus size: 66
32259080 GAAGACTCGT
*
32259090 TATCTCATTCAAGAGCTTGGGAAGACTCGATATCT-CCTTCAAGATCTTGGGATTGAGAAGACCT
1 TATCTCATTCAAGAGCTTGGGAAGACTCGATAT-TGCCTTCAAGAGCTTGGGATTGAGAAGACCT
32259154 AA
65 AA
* * * * * * *
32259156 TATCCCATTCAGGAGCTTGGGAAGGCTCGATATTGCGTTCAGGAGCTTGGGATTGAGAAGACTTG
1 TATCTCATTCAAGAGCTTGGGAAGACTCGATATTGCCTTCAAGAGCTTGGGATTGAGAAGACCTA
32259221 A
66 A
**
32259222 TATCTTGTTCAAGAGCTTGGGAAGA-TCTGATATT
1 TATCTCATTCAAGAGCTTGGGAAGACTC-GATATT
32259256 TTTCTCCAGT
Statistics
Matches: 85, Mismatches: 13, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
65 3 0.04
66 82 0.96
ACGTcount: A:0.27, C:0.17, G:0.26, T:0.30
Consensus pattern (66 bp):
TATCTCATTCAAGAGCTTGGGAAGACTCGATATTGCCTTCAAGAGCTTGGGATTGAGAAGACCTA
A
Found at i:32260273 original size:21 final size:22
Alignment explanation
Indices: 32260231--32260278 Score: 62
Period size: 21 Copynumber: 2.2 Consensus size: 22
32260221 CGTCAACATT
32260231 TAATTATTTTTTACAATATAAA
1 TAATTATTTTTTACAATATAAA
* * *
32260253 -AATTATTTTTTATATTTTAAA
1 TAATTATTTTTTACAATATAAA
32260274 TAATT
1 TAATT
32260279 TTAATTTTAA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
21 18 0.82
22 4 0.18
ACGTcount: A:0.42, C:0.02, G:0.00, T:0.56
Consensus pattern (22 bp):
TAATTATTTTTTACAATATAAA
Found at i:32260291 original size:17 final size:18
Alignment explanation
Indices: 32260260--32260296 Score: 51
Period size: 17 Copynumber: 2.1 Consensus size: 18
32260250 AAAAATTATT
32260260 TTTTATATTTTAAA-TAA
1 TTTTATATTTTAAATTAA
32260277 TTTTA-ATTTTAAAATTAA
1 TTTTATATTTT-AAATTAA
32260295 TT
1 TT
32260297 AAATGCTTAC
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
16 5 0.28
17 8 0.44
18 5 0.28
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (18 bp):
TTTTATATTTTAAATTAA
Found at i:32271380 original size:26 final size:26
Alignment explanation
Indices: 32271351--32271458 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
32271341 TGGTACAAAT
32271351 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
32271377 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
32271403 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
32271429 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
32271455 TGAT
1 TGAT
32271459 GGGCATTTCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.32, C:0.07, G:0.24, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:32272969 original size:26 final size:26
Alignment explanation
Indices: 32272903--32272978 Score: 98
Period size: 26 Copynumber: 2.8 Consensus size: 26
32272893 AAAAGTAGCT
* *
32272903 AAATTACTATAATACCCCTATGTATGGA
1 AAATTACTATTATACCCCTA-G-GTGGA
* *
32272931 AAATTACTGTTATACCCCTAGGTGTA
1 AAATTACTATTATACCCCTAGGTGGA
32272957 AAATTACTATTATACCCCTAGG
1 AAATTACTATTATACCCCTAGG
32272979 GTTAATTTTG
Statistics
Matches: 43, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
26 24 0.56
27 1 0.02
28 18 0.42
ACGTcount: A:0.36, C:0.20, G:0.12, T:0.33
Consensus pattern (26 bp):
AAATTACTATTATACCCCTAGGTGGA
Found at i:32273122 original size:27 final size:27
Alignment explanation
Indices: 32273082--32273222 Score: 171
Period size: 27 Copynumber: 5.2 Consensus size: 27
32273072 AGGAAGCGTC
*
32273082 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCACAATTATCTGAT
*
32273109 CTGGTGGCTCTGCCAC-ATATATCTGTT
1 CTGGTGGCTCTGCCACAAT-TATCTGAT
*
32273136 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCACAATTATCTGAT
* *
32273163 CTGGTGGCTCTACCAC-ATATATCTGTT
1 CTGGTGGCTCTGCCACAAT-TATCTGAT
* *
32273190 CTGGTGGCTCTGCCATAA-TATCTATAT
1 CTGGTGGCTCTGCCACAATTATCT-GAT
32273217 CTGGTG
1 CTGGTG
32273223 ACTTCGTCAC
Statistics
Matches: 98, Mismatches: 11, Indels: 10
0.82 0.09 0.08
Matches are distributed among these distances:
26 9 0.09
27 86 0.88
28 3 0.03
ACGTcount: A:0.19, C:0.23, G:0.22, T:0.35
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAATTATCTGAT
Found at i:32273164 original size:54 final size:54
Alignment explanation
Indices: 32273082--32273222 Score: 230
Period size: 54 Copynumber: 2.6 Consensus size: 54
32273072 AGGAAGCGTC
*
32273082 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTACCACATATATCTGTT
32273136 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTACCACATATATCTGTT
1 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTACCACATATATCTGTT
* * *
32273190 CTGGTGGCTCTGCCATAA-TATCTATATCTGGTG
1 CTGGTGGCTATGCCACAATTATCT-GATCTGGTG
32273223 ACTTCGTCAC
Statistics
Matches: 82, Mismatches: 4, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
53 5 0.06
54 77 0.94
ACGTcount: A:0.19, C:0.23, G:0.22, T:0.35
Consensus pattern (54 bp):
CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTACCACATATATCTGTT
Found at i:32273234 original size:81 final size:80
Alignment explanation
Indices: 32273082--32273240 Score: 198
Period size: 81 Copynumber: 2.0 Consensus size: 80
32273072 AGGAAGCGTC
* * *
32273082 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTTCTGGTGGCTAT
1 CTGGTGGCTATACCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTATTCTGGTGACTAT
32273147 GCCACAATTATCTGAT
66 GCCACAA-TATCTGAT
* * *
32273163 CTGGTGGCTCTACCAC-ATATATCTGTTCTGGTGGCTCTGCCATA-ATATCTATATCTGGTGACT
1 CTGGTGGCTATACCACAAT-TATCTGATCTGGTGGCTCTGCCACATATATCTAT-TCTGGTGACT
*
32273226 -TCGTCACAATATCTG
64 AT-GCCACAATATCTG
32273241 GCAGCCTCGC
Statistics
Matches: 68, Mismatches: 7, Indels: 7
0.83 0.09 0.09
Matches are distributed among these distances:
80 16 0.24
81 52 0.76
ACGTcount: A:0.20, C:0.24, G:0.21, T:0.35
Consensus pattern (80 bp):
CTGGTGGCTATACCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTATTCTGGTGACTAT
GCCACAATATCTGAT
Found at i:32275205 original size:12 final size:12
Alignment explanation
Indices: 32275188--32275215 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
32275178 CATATAACAA
32275188 TAGTTATCAATC
1 TAGTTATCAATC
32275200 TAGTTATCAATC
1 TAGTTATCAATC
32275212 TAGT
1 TAGT
32275216 ACAAAAATGG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.32, C:0.14, G:0.11, T:0.43
Consensus pattern (12 bp):
TAGTTATCAATC
Found at i:32277376 original size:42 final size:42
Alignment explanation
Indices: 32277314--32277435 Score: 147
Period size: 42 Copynumber: 2.9 Consensus size: 42
32277304 TGAGTTTCAG
* * * *
32277314 TTTAACCCTAAT-GGTTTCCGTTTAGCTCTTTTGAGGTTTTA
1 TTTAACCCTTATGGGTTTCCGTTTAGCTCTTATGAGCTTCTA
* *
32277355 TTTAACCCTTATGGGTTTCCGTTCAGCTCTTATGAGCTTCTG
1 TTTAACCCTTATGGGTTTCCGTTTAGCTCTTATGAGCTTCTA
* * * *
32277397 TTCAACCCTTACGGGTTTCCGTTTAGCACTTATGTGCTT
1 TTTAACCCTTATGGGTTTCCGTTTAGCTCTTATGAGCTT
32277436 TTTTGCAGCC
Statistics
Matches: 69, Mismatches: 11, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
41 11 0.16
42 58 0.84
ACGTcount: A:0.16, C:0.22, G:0.18, T:0.44
Consensus pattern (42 bp):
TTTAACCCTTATGGGTTTCCGTTTAGCTCTTATGAGCTTCTA
Found at i:32277387 original size:21 final size:21
Alignment explanation
Indices: 32277362--32277430 Score: 66
Period size: 21 Copynumber: 3.3 Consensus size: 21
32277352 TTATTTAACC
*
32277362 CTTATGGGTTTCCGTTCAGCT
1 CTTATGGGTTTCCGTTCAGCA
* * * * *
32277383 CTTATGAGCTTCTGTTCAACC
1 CTTATGGGTTTCCGTTCAGCA
* *
32277404 CTTACGGGTTTCCGTTTAGCA
1 CTTATGGGTTTCCGTTCAGCA
32277425 CTTATG
1 CTTATG
32277431 TGCTTTTTTG
Statistics
Matches: 35, Mismatches: 13, Indels: 0
0.73 0.27 0.00
Matches are distributed among these distances:
21 35 1.00
ACGTcount: A:0.14, C:0.25, G:0.20, T:0.41
Consensus pattern (21 bp):
CTTATGGGTTTCCGTTCAGCA
Found at i:32281649 original size:52 final size:52
Alignment explanation
Indices: 32281587--32281686 Score: 173
Period size: 52 Copynumber: 1.9 Consensus size: 52
32281577 GGATAGATTA
* *
32281587 TTTATATGTTTATATCGGCTGTTACATAACACTTCTAATTTTAGCTTAACTG
1 TTTATATGTTTATATCGACTGTTACATAACACTTCTAATTTTAACTTAACTG
*
32281639 TTTATATGTTTATATCGACTGTTACATAGCACTTCTAATTTTAACTTA
1 TTTATATGTTTATATCGACTGTTACATAACACTTCTAATTTTAACTTA
32281687 GCCTCCCAAA
Statistics
Matches: 45, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
52 45 1.00
ACGTcount: A:0.28, C:0.15, G:0.10, T:0.47
Consensus pattern (52 bp):
TTTATATGTTTATATCGACTGTTACATAACACTTCTAATTTTAACTTAACTG
Found at i:32282070 original size:34 final size:34
Alignment explanation
Indices: 32282027--32282094 Score: 127
Period size: 34 Copynumber: 2.0 Consensus size: 34
32282017 GAAAAATATT
32282027 ATATTAAACAAATTATATCACATTTATTCGCTTA
1 ATATTAAACAAATTATATCACATTTATTCGCTTA
*
32282061 ATATTAAACAAATTATATTACATTTATTCGCTTA
1 ATATTAAACAAATTATATCACATTTATTCGCTTA
32282095 CTTCATATTT
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 33 1.00
ACGTcount: A:0.41, C:0.13, G:0.03, T:0.43
Consensus pattern (34 bp):
ATATTAAACAAATTATATCACATTTATTCGCTTA
Found at i:32283011 original size:5 final size:5
Alignment explanation
Indices: 32283001--32283033 Score: 66
Period size: 5 Copynumber: 6.6 Consensus size: 5
32282991 ATTAGTTACG
32283001 TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT TTT
1 TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT TTT
32283034 TTTCTTTGTT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 28 1.00
ACGTcount: A:0.18, C:0.00, G:0.00, T:0.82
Consensus pattern (5 bp):
TTTAT
Found at i:32283450 original size:14 final size:13
Alignment explanation
Indices: 32283432--32283456 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
32283422 AGAAGAAGTT
32283432 TTTTTTTAAATGA
1 TTTTTTTAAATGA
32283445 TTTTTTTAAATG
1 TTTTTTTAAATG
32283457 GGCTTTAAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.28, C:0.00, G:0.08, T:0.64
Consensus pattern (13 bp):
TTTTTTTAAATGA
Found at i:32285707 original size:31 final size:31
Alignment explanation
Indices: 32285669--32285730 Score: 115
Period size: 31 Copynumber: 2.0 Consensus size: 31
32285659 CCTAGGTAAA
32285669 GCCGCACCGAACCATTAGTGGTTACCCGAAT
1 GCCGCACCGAACCATTAGTGGTTACCCGAAT
*
32285700 GCCGCACCGAACCATTAGTGGTTACCTGAAT
1 GCCGCACCGAACCATTAGTGGTTACCCGAAT
32285731 AGGCACTTTG
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.26, C:0.31, G:0.23, T:0.21
Consensus pattern (31 bp):
GCCGCACCGAACCATTAGTGGTTACCCGAAT
Found at i:32287592 original size:61 final size:61
Alignment explanation
Indices: 32287524--32287648 Score: 205
Period size: 61 Copynumber: 2.0 Consensus size: 61
32287514 TTGAAGGCTA
* * * *
32287524 GAATAGCAGAACTAGAAAAATCGCTTCATTAGTATCGTAGTCATAACTCTGCAATGGAGCT
1 GAATAGCAGAACTAGAAAAATCACTTCATCAATATCGTAGTCACAACTCTGCAATGGAGCT
*
32287585 GAATAGCAGAACTAGAAAAATCACTTTATCAATATCGTAGTCACAACTCTGCAATGGAGCT
1 GAATAGCAGAACTAGAAAAATCACTTCATCAATATCGTAGTCACAACTCTGCAATGGAGCT
32287646 GAA
1 GAA
32287649 GGCGAGTTTA
Statistics
Matches: 59, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
61 59 1.00
ACGTcount: A:0.38, C:0.18, G:0.18, T:0.25
Consensus pattern (61 bp):
GAATAGCAGAACTAGAAAAATCACTTCATCAATATCGTAGTCACAACTCTGCAATGGAGCT
Found at i:32291733 original size:4 final size:4
Alignment explanation
Indices: 32291716--32291750 Score: 52
Period size: 4 Copynumber: 8.8 Consensus size: 4
32291706 TTACTACCAA
* *
32291716 TATG TATA TATG TATG TATG TACG TATG TATG TAT
1 TATG TATG TATG TATG TATG TATG TATG TATG TAT
32291751 ATTTTTTTTC
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
4 27 1.00
ACGTcount: A:0.29, C:0.03, G:0.20, T:0.49
Consensus pattern (4 bp):
TATG
Found at i:32291767 original size:10 final size:10
Alignment explanation
Indices: 32291752--32291796 Score: 63
Period size: 10 Copynumber: 4.3 Consensus size: 10
32291742 TGTATGTATA
32291752 TTTTTTTTCT
1 TTTTTTTTCT
*
32291762 TTTTTTTGTAT
1 TTTTTTT-TCT
32291773 GTTTTTTTTCT
1 -TTTTTTTTCT
32291784 TTTTTTTTCT
1 TTTTTTTTCT
32291794 TTT
1 TTT
32291797 AATAAGAATA
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
10 20 0.65
11 4 0.13
12 7 0.23
ACGTcount: A:0.02, C:0.07, G:0.04, T:0.87
Consensus pattern (10 bp):
TTTTTTTTCT
Found at i:32291777 original size:22 final size:22
Alignment explanation
Indices: 32291746--32291790 Score: 81
Period size: 22 Copynumber: 2.0 Consensus size: 22
32291736 TACGTATGTA
32291746 TGTATATTTTTTTTCTTTTTTT
1 TGTATATTTTTTTTCTTTTTTT
*
32291768 TGTATGTTTTTTTTCTTTTTTT
1 TGTATATTTTTTTTCTTTTTTT
32291790 T
1 T
32291791 TCTTTTAATA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.07, C:0.04, G:0.07, T:0.82
Consensus pattern (22 bp):
TGTATATTTTTTTTCTTTTTTT
Found at i:32294778 original size:248 final size:247
Alignment explanation
Indices: 32294336--32294814 Score: 805
Period size: 248 Copynumber: 1.9 Consensus size: 247
32294326 AATAAATAAT
32294336 AAAAAAATTAAGTAATAAAAGAATATAATAAAGAACTAAAGAAAAATAAAGGTTAAAAAGGGAAT
1 AAAAAAATTAAGTAATAAAAGAATATAATAAAGAACTAAAGAAAAATAAAGGTTAAAAAGGGAAT
* *
32294401 AAGGGGGAACCAATGGTGGTTGGTGGTGGGTTGAAGTGTAACGGCGGTGGAAGGGGTCGGTCAGT
66 AAGGGGGAACCAATGGTGGTTGGTGGTGGGTTGAAGTGTAACAGCGGTGGAAGGGGTCGGTCAGC
* * * *
32294466 TGGTGAGGCGACGGTGGCAAGGGAGGTGGGTTGGACAGATGGGGAGTGCGGTTCTTGGTGGCTAA
131 TGGCGAGGCGACGGTGGCAAGAGAGGTGGGTTGGACAGACGGGGAGTGCGGCTCTTGGTGGCTAA
* *
32294531 GGAGAGGGGCAAGGTGTGGGAAGGAAAGAAATGGAGGGGGAAGGAAAGATTA
196 GGAGAGGGGCAAGGTGTGGAAAGGAAAGAAAGGGAGGGGGAAGGAAAGATTA
* *
32294583 AAAATAAATTAAGTAATAAAAGAATATAATAAAGAACTAAAGAAAAATGAAGTTTAAAAAGGGAA
1 AAAA-AAATTAAGTAATAAAAGAATATAATAAAGAACTAAAGAAAAATAAAGGTTAAAAAGGGAA
* * **
32294648 TAAGGGGGAATCGATGGTGGTTGGTGGTGGGTTGAAGTGTAACAGCGGTGGAAGGGGTCGGTTGG
65 TAAGGGGGAACCAATGGTGGTTGGTGGTGGGTTGAAGTGTAACAGCGGTGGAAGGGGTCGGTCAG
* *
32294713 CTGGCGAGGCGACGGTGGCGAGAGAGGTGGGTTGGACGGACGGGGAGTGCGGCTCTTGGTGGCTA
130 CTGGCGAGGCGACGGTGGCAAGAGAGGTGGGTTGGACAGACGGGGAGTGCGGCTCTTGGTGGCTA
32294778 AGGAGAGGGGCAAGGTGTGGAAAGGAAAGAAAGGGAG
195 AGGAGAGGGGCAAGGTGTGGAAAGGAAAGAAAGGGAG
32294815 AAGGTCGATC
Statistics
Matches: 215, Mismatches: 16, Indels: 1
0.93 0.07 0.00
Matches are distributed among these distances:
247 4 0.02
248 211 0.98
ACGTcount: A:0.34, C:0.07, G:0.41, T:0.18
Consensus pattern (247 bp):
AAAAAAATTAAGTAATAAAAGAATATAATAAAGAACTAAAGAAAAATAAAGGTTAAAAAGGGAAT
AAGGGGGAACCAATGGTGGTTGGTGGTGGGTTGAAGTGTAACAGCGGTGGAAGGGGTCGGTCAGC
TGGCGAGGCGACGGTGGCAAGAGAGGTGGGTTGGACAGACGGGGAGTGCGGCTCTTGGTGGCTAA
GGAGAGGGGCAAGGTGTGGAAAGGAAAGAAAGGGAGGGGGAAGGAAAGATTA
Found at i:32304990 original size:2 final size:2
Alignment explanation
Indices: 32304985--32305016 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
32304975 TAAATATATA
32304985 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
32305017 AATGAGATAT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.00, C:0.00, G:0.50, T:0.50
Consensus pattern (2 bp):
TG
Found at i:32305190 original size:15 final size:15
Alignment explanation
Indices: 32305172--32305228 Score: 89
Period size: 15 Copynumber: 3.9 Consensus size: 15
32305162 TATCTGTTTT
32305172 ATTGAATTTATATTG
1 ATTGAATTTATATTG
* *
32305187 ATTGAAATTATTTTG
1 ATTGAATTTATATTG
32305202 ATTGAATTTATATTG
1 ATTGAATTTATATTG
32305217 ATTGAA-TTATAT
1 ATTGAATTTATAT
32305229 AATATATATG
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
14 6 0.16
15 32 0.84
ACGTcount: A:0.35, C:0.00, G:0.12, T:0.53
Consensus pattern (15 bp):
ATTGAATTTATATTG
Found at i:32305207 original size:30 final size:28
Alignment explanation
Indices: 32305168--32305226 Score: 100
Period size: 30 Copynumber: 2.0 Consensus size: 28
32305158 TGAATATCTG
32305168 TTTTATTGAATTTATATTGATTGAAATTA
1 TTTTATTGAATTTATATTGATTG-AATTA
32305197 TTTTGATTGAATTTATATTGATTGAATTA
1 TTTT-ATTGAATTTATATTGATTGAATTA
32305226 T
1 T
32305227 ATAATATATA
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
29 10 0.34
30 19 0.66
ACGTcount: A:0.32, C:0.00, G:0.12, T:0.56
Consensus pattern (28 bp):
TTTTATTGAATTTATATTGATTGAATTA
Found at i:32305822 original size:19 final size:18
Alignment explanation
Indices: 32305784--32305823 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 18
32305774 ATGAAATGAA
32305784 AAATTGAATTGAGAATTG
1 AAATTGAATTGAGAATTG
32305802 AAATTGAGATATGAG-ATTG
1 AAATTGA-AT-TGAGAATTG
32305821 AAA
1 AAA
32305824 ACATGAACCA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
18 7 0.35
19 9 0.45
20 4 0.20
ACGTcount: A:0.47, C:0.00, G:0.23, T:0.30
Consensus pattern (18 bp):
AAATTGAATTGAGAATTG
Found at i:32310501 original size:13 final size:13
Alignment explanation
Indices: 32310483--32310529 Score: 53
Period size: 13 Copynumber: 3.7 Consensus size: 13
32310473 TATATATATA
32310483 AAAGAAACAATAG
1 AAAGAAACAATAG
*
32310496 AAAGAAACAAAAG
1 AAAGAAACAATAG
*
32310509 -AATAAA-AATAGG
1 AAAGAAACAATA-G
32310521 AAAGAAACA
1 AAAGAAACA
32310530 GAATAGGAGG
Statistics
Matches: 27, Mismatches: 4, Indels: 5
0.75 0.11 0.14
Matches are distributed among these distances:
11 3 0.11
12 6 0.22
13 17 0.63
14 1 0.04
ACGTcount: A:0.72, C:0.06, G:0.15, T:0.06
Consensus pattern (13 bp):
AAAGAAACAATAG
Found at i:32311515 original size:15 final size:15
Alignment explanation
Indices: 32311497--32311553 Score: 80
Period size: 15 Copynumber: 3.9 Consensus size: 15
32311487 TATCTGTTTT
32311497 ATTGAATTTATATTG
1 ATTGAATTTATATTG
* *
32311512 ATTGAAATTATTTTG
1 ATTGAATTTATATTG
*
32311527 GTTGAATTTATATTG
1 ATTGAATTTATATTG
32311542 ATTGAA-TTATAT
1 ATTGAATTTATAT
32311554 AATATATATG
Statistics
Matches: 36, Mismatches: 6, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
14 6 0.17
15 30 0.83
ACGTcount: A:0.33, C:0.00, G:0.14, T:0.53
Consensus pattern (15 bp):
ATTGAATTTATATTG
Found at i:32312129 original size:18 final size:19
Alignment explanation
Indices: 32312108--32312148 Score: 59
Period size: 19 Copynumber: 2.2 Consensus size: 19
32312098 AATGAAATGA
32312108 GAAATTGA-AT-TGAGAATT
1 GAAATTGAGATATGAG-ATT
32312126 GAAATTGAGATATGAGATT
1 GAAATTGAGATATGAGATT
32312145 GAAA
1 GAAA
32312149 ACATGAACCA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 8 0.38
19 9 0.43
20 4 0.19
ACGTcount: A:0.46, C:0.00, G:0.24, T:0.29
Consensus pattern (19 bp):
GAAATTGAGATATGAGATT
Found at i:32327249 original size:25 final size:26
Alignment explanation
Indices: 32327212--32327264 Score: 65
Period size: 26 Copynumber: 2.0 Consensus size: 26
32327202 TCAAACATGC
32327212 ATTTAGGTCAATTTAATC-CTAGGGGT
1 ATTTAGGTCAATTT-ATCACTAGGGGT
*
32327238 ATTTCGGT-AATTTATCTACTAGGGGT
1 ATTTAGGTCAATTTATC-ACTAGGGGT
32327264 A
1 A
32327265 AAACTGTAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
24 3 0.12
25 5 0.21
26 16 0.67
ACGTcount: A:0.26, C:0.11, G:0.23, T:0.40
Consensus pattern (26 bp):
ATTTAGGTCAATTTATCACTAGGGGT
Found at i:32327416 original size:19 final size:19
Alignment explanation
Indices: 32327392--32327438 Score: 94
Period size: 19 Copynumber: 2.5 Consensus size: 19
32327382 ATTGGGCCCG
32327392 TTGGCCCATCATTCCAATT
1 TTGGCCCATCATTCCAATT
32327411 TTGGCCCATCATTCCAATT
1 TTGGCCCATCATTCCAATT
32327430 TTGGCCCAT
1 TTGGCCCAT
32327439 TAAGCCCAAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 28 1.00
ACGTcount: A:0.19, C:0.32, G:0.13, T:0.36
Consensus pattern (19 bp):
TTGGCCCATCATTCCAATT
Found at i:32328796 original size:26 final size:26
Alignment explanation
Indices: 32328765--32328872 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
32328755 TGAAATGCCC
*
32328765 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
32328791 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
32328817 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
32328843 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
32328869 ATCA
1 ATCA
32328873 ATTTGTACCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.36, C:0.24, G:0.07, T:0.32
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:32335870 original size:26 final size:26
Alignment explanation
Indices: 32335839--32335946 Score: 180
Period size: 26 Copynumber: 4.2 Consensus size: 26
32335829 TGAAATGCCC
*
32335839 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
32335865 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* * *
32335891 ATCATAGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
32335917 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
32335943 ATCA
1 ATCA
32335947 ATTTGTACCA
Statistics
Matches: 75, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 75 1.00
ACGTcount: A:0.37, C:0.24, G:0.06, T:0.32
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:32353401 original size:29 final size:29
Alignment explanation
Indices: 32353335--32353449 Score: 133
Period size: 29 Copynumber: 4.0 Consensus size: 29
32353325 TACATAGGTG
* *
32353335 CATATGGCCCACTAGGCCCAA-TCTTATT
1 CATATGGCCCATTAGGCCCAATTCATATT
* * *
32353363 CAAATGGCCCATTTGGCCCAGTTCATATT
1 CATATGGCCCATTAGGCCCAATTCATATT
* * **
32353392 CTTATGGCCCACTAGGCCCAATTCACCTT
1 CATATGGCCCATTAGGCCCAATTCATATT
*
32353421 CATATGGCCCATTAGGCCCAAATCATATT
1 CATATGGCCCATTAGGCCCAATTCATATT
32353450 ATACTCATGC
Statistics
Matches: 69, Mismatches: 17, Indels: 1
0.79 0.20 0.01
Matches are distributed among these distances:
28 17 0.25
29 52 0.75
ACGTcount: A:0.25, C:0.31, G:0.15, T:0.29
Consensus pattern (29 bp):
CATATGGCCCATTAGGCCCAATTCATATT
Found at i:32353447 original size:58 final size:57
Alignment explanation
Indices: 32353337--32353449 Score: 156
Period size: 58 Copynumber: 2.0 Consensus size: 57
32353327 CATAGGTGCA
* * **
32353337 TATGGCCCACTAGGCCCAATCTTATTCAAATGGCCCATTTGGCCCAGTTCATATTCT
1 TATGGCCCACTAGGCCCAATCTCATTCAAATGGCCCATTAGGCCCAAATCATATTCT
*
32353394 TATGGCCCACTAGGCCCAAT-TCACCTTCATATGGCCCATTAGGCCCAAATCATATT
1 TATGGCCCACTAGGCCCAATCTCA--TTCAAATGGCCCATTAGGCCCAAATCATATT
32353450 ATACTCATGC
Statistics
Matches: 49, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
56 2 0.04
57 20 0.41
58 27 0.55
ACGTcount: A:0.25, C:0.31, G:0.15, T:0.29
Consensus pattern (57 bp):
TATGGCCCACTAGGCCCAATCTCATTCAAATGGCCCATTAGGCCCAAATCATATTCT
Found at i:32358612 original size:21 final size:20
Alignment explanation
Indices: 32358587--32358646 Score: 59
Period size: 21 Copynumber: 2.9 Consensus size: 20
32358577 TAATAAAATT
32358587 TATAAACAAAATATATAATGA
1 TATAAACAAAATATATAAT-A
*
32358608 TATAAACAATATGATAGATAATA
1 TATAAACAA-A--ATATATAATA
*
32358631 TATAAA-ATAATATATA
1 TATAAACAAAATATATA
32358647 TAGTAAAATG
Statistics
Matches: 33, Mismatches: 3, Indels: 8
0.75 0.07 0.18
Matches are distributed among these distances:
19 6 0.18
21 10 0.30
22 2 0.06
23 7 0.21
24 8 0.24
ACGTcount: A:0.60, C:0.03, G:0.05, T:0.32
Consensus pattern (20 bp):
TATAAACAAAATATATAATA
Found at i:32358675 original size:7 final size:7
Alignment explanation
Indices: 32358596--32358711 Score: 60
Period size: 7 Copynumber: 15.9 Consensus size: 7
32358586 TTATAAACAA
32358596 AATATAT
1 AATATAT
32358603 AATGATAT
1 AAT-ATAT
*
32358611 AAACAATAT
1 -AA-TATAT
* *
32358620 GATAGAT
1 AATATAT
32358627 AATATAT
1 AATATAT
32358634 AA-A-AT
1 AATATAT
32358639 AATATAT
1 AATATAT
*
32358646 -ATAGTAA
1 AATA-TAT
*
32358653 AATGTAT
1 AATATAT
*
32358660 -GTAATAT
1 AAT-ATAT
32358667 AATATAT
1 AATATAT
32358674 AATATAT
1 AATATAT
32358681 AATAATGTAT
1 AAT-A--TAT
32358691 AATAATAT
1 AAT-ATAT
*
32358699 AATAAAT
1 AATATAT
32358706 AATATA
1 AATATA
32358712 CAAAGATAAA
Statistics
Matches: 83, Mismatches: 14, Indels: 24
0.69 0.12 0.20
Matches are distributed among these distances:
5 4 0.05
6 6 0.07
7 44 0.53
8 15 0.18
9 6 0.07
10 8 0.10
ACGTcount: A:0.57, C:0.01, G:0.06, T:0.36
Consensus pattern (7 bp):
AATATAT
Found at i:32358678 original size:12 final size:12
Alignment explanation
Indices: 32358599--32358711 Score: 67
Period size: 12 Copynumber: 9.4 Consensus size: 12
32358589 TAAACAAAAT
32358599 ATATAATGATATA
1 ATATAAT-ATATA
*
32358612 A-ACAATATGAT-
1 ATATAATAT-ATA
*
32358623 AGATAATATATA
1 ATATAATATATA
*
32358635 AAATAATATATA
1 ATATAATATATA
* *
32358647 TAGTAAAATGTATGTA
1 -A-TATAA--TATATA
32358663 ATATAATATATA
1 ATATAATATATA
32358675 ATAT-ATA-ATA
1 ATATAATATATA
*
32358685 ATGT-ATA-ATA
1 ATATAATATATA
*
32358695 ATATAATAAATA
1 ATATAATATATA
32358707 ATATA
1 ATATA
32358712 CAAAGATAAA
Statistics
Matches: 81, Mismatches: 10, Indels: 19
0.74 0.09 0.17
Matches are distributed among these distances:
10 15 0.19
11 11 0.14
12 40 0.49
13 2 0.02
14 7 0.09
15 1 0.01
16 5 0.06
ACGTcount: A:0.57, C:0.01, G:0.06, T:0.36
Consensus pattern (12 bp):
ATATAATATATA
Found at i:32358691 original size:10 final size:10
Alignment explanation
Indices: 32358596--32358711 Score: 75
Period size: 10 Copynumber: 11.6 Consensus size: 10
32358586 TTATAAACAA
32358596 AATATATAAT
1 AATATATAAT
* *
32358606 GATATA-AAC
1 AATATATAAT
32358615 AATATGATAGAT
1 AATAT-ATA-AT
32358627 AATATATAA-
1 AATATATAAT
32358636 AATA-AT-AT
1 AATATATAAT
32358644 -ATATAGTAA-
1 AATATA-TAAT
* *
32358653 AATGTAT-GT
1 AATATATAAT
32358662 AATATAATATAT
1 AATAT-ATA-AT
32358674 AATATATAAT
1 AATATATAAT
*
32358684 AATGTATAAT
1 AATATATAAT
32358694 AATATAATAAAT
1 AATAT-AT-AAT
32358706 AATATA
1 AATATA
32358712 CAAAGATAAA
Statistics
Matches: 82, Mismatches: 10, Indels: 27
0.69 0.08 0.23
Matches are distributed among these distances:
7 4 0.05
8 3 0.04
9 16 0.20
10 29 0.35
11 10 0.12
12 20 0.24
ACGTcount: A:0.57, C:0.01, G:0.06, T:0.36
Consensus pattern (10 bp):
AATATATAAT
Found at i:32360334 original size:44 final size:44
Alignment explanation
Indices: 32360254--32360550 Score: 353
Period size: 44 Copynumber: 6.8 Consensus size: 44
32360244 CACCCTACCT
** * * *
32360254 AATACAGAGACGCCAAATCCGCTACCCTCGATCTGCTCTTTGAC
1 AATACAGAGACGCCAAATCTACTATCTTCGATCTGCTCTCTGAC
* ** * * *
32360298 AATATAGAGGTGCCAAATCTACCATTTTCGACCTGCTCTCTGAC
1 AATACAGAGACGCCAAATCTACTATCTTCGATCTGCTCTCTGAC
** * * *
32360342 AATACAGAGATACCAAATCTGCTATCTTCGATTTTCTCTCTGAC
1 AATACAGAGACGCCAAATCTACTATCTTCGATCTGCTCTCTGAC
* * *
32360386 AATATAGAGACGTC-AATCCTACTATCTTCGATCTGCTCTCTTAC
1 AATACAGAGACGCCAAAT-CTACTATCTTCGATCTGCTCTCTGAC
* * *
32360430 AATATAGAAACGCCAAATCTACTATCTTCGATCTGCTTTCTGAC
1 AATACAGAGACGCCAAATCTACTATCTTCGATCTGCTCTCTGAC
* *
32360474 AATACAGTGACGCCAAATCTGCTATCTTCGATCTGCTCTCTGAC
1 AATACAGAGACGCCAAATCTACTATCTTCGATCTGCTCTCTGAC
*
32360518 AATACAGAGACGCCAAATCTACTATCTTTGATC
1 AATACAGAGACGCCAAATCTACTATCTTCGATC
32360551 AGAGACGCCA
Statistics
Matches: 211, Mismatches: 40, Indels: 4
0.83 0.16 0.02
Matches are distributed among these distances:
43 3 0.01
44 205 0.97
45 3 0.01
ACGTcount: A:0.29, C:0.28, G:0.13, T:0.30
Consensus pattern (44 bp):
AATACAGAGACGCCAAATCTACTATCTTCGATCTGCTCTCTGAC
Found at i:32360562 original size:28 final size:28
Alignment explanation
Indices: 32360522--32360578 Score: 114
Period size: 28 Copynumber: 2.0 Consensus size: 28
32360512 TCTGACAATA
32360522 CAGAGACGCCAAATCTACTATCTTTGAT
1 CAGAGACGCCAAATCTACTATCTTTGAT
32360550 CAGAGACGCCAAATCTACTATCTTTGAT
1 CAGAGACGCCAAATCTACTATCTTTGAT
32360578 C
1 C
32360579 TACTCTCTGA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.32, C:0.26, G:0.14, T:0.28
Consensus pattern (28 bp):
CAGAGACGCCAAATCTACTATCTTTGAT
Found at i:32360602 original size:72 final size:72
Alignment explanation
Indices: 32360482--32360622 Score: 228
Period size: 72 Copynumber: 2.0 Consensus size: 72
32360472 ACAATACAGT
* * *
32360482 GACGCCAAATCTGCTATCTTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCTACTATCTTT
1 GACGCCAAATCTACTATCTTCGATCTACTCTCTGACAATACAGAGACGCCAAATCTACTATCTTC
32360547 GATCAGA
66 GATCAGA
* * *
32360554 GACGCCAAATCTACTATCTTTGATCTACTCTCTGACAATACAGGGACGCCAAATCTGCTATCTTC
1 GACGCCAAATCTACTATCTTCGATCTACTCTCTGACAATACAGAGACGCCAAATCTACTATCTTC
32360619 GATC
66 GATC
32360623 TGCTCCCTGA
Statistics
Matches: 63, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
72 63 1.00
ACGTcount: A:0.28, C:0.28, G:0.15, T:0.28
Consensus pattern (72 bp):
GACGCCAAATCTACTATCTTCGATCTACTCTCTGACAATACAGAGACGCCAAATCTACTATCTTC
GATCAGA
Found at i:32360604 original size:44 final size:44
Alignment explanation
Indices: 32360550--32360924 Score: 412
Period size: 44 Copynumber: 8.5 Consensus size: 44
32360540 TATCTTTGAT
* * *
32360550 CAGAGACGCCAAATCTACTATCTTTGATCTACTCTCTGACAATA
1 CAGAGACGCCAAATCTGCTATCTTCGATCTGCTCTCTGACAATA
* *
32360594 CAGGGACGCCAAATCTGCTATCTTCGATCTGCTCCCTGACAATA
1 CAGAGACGCCAAATCTGCTATCTTCGATCTGCTCTCTGACAATA
* * ** *
32360638 CAGGGGCGCCAAATCTATTATCTTCGATCTGCTCTCTAACAATA
1 CAGAGACGCCAAATCTGCTATCTTCGATCTGCTCTCTGACAATA
* *
32360682 CAGGGACGCCAAATCTGTTATCTTCGATCTGCTCTCTGACAATA
1 CAGAGACGCCAAATCTGCTATCTTCGATCTGCTCTCTGACAATA
** * *
32360726 CAGAGACATCAAATCTACTAATCTTCGATATGCTCTCTGACAATA
1 CAGAGACGCCAAATCTGCT-ATCTTCGATCTGCTCTCTGACAATA
* ** *
32360771 TAGAGACGATAAATCTGCTAATC-TCTGATCTGCTCTCTGATAATA
1 CAGAGACGCCAAATCTGCT-ATCTTC-GATCTGCTCTCTGACAATA
** * *
32360816 CAGAGACAACAAATCTGCTATC-GCTGATCTGCTCTCTGACCATA
1 CAGAGACGCCAAATCTGCTATCTTC-GATCTGCTCTCTGACAATA
* * * * * * *
32360860 CAGGGATGCCAAACCAGCTATTTTCAATCTGCTCTTTGACAATA
1 CAGAGACGCCAAATCTGCTATCTTCGATCTGCTCTCTGACAATA
*
32360904 CAGAGATGCCAAATCTGCTAT
1 CAGAGACGCCAAATCTGCTAT
32360925 GACAATACAG
Statistics
Matches: 282, Mismatches: 46, Indels: 6
0.84 0.14 0.02
Matches are distributed among these distances:
44 206 0.73
45 76 0.27
ACGTcount: A:0.30, C:0.26, G:0.15, T:0.29
Consensus pattern (44 bp):
CAGAGACGCCAAATCTGCTATCTTCGATCTGCTCTCTGACAATA
Found at i:32360648 original size:116 final size:116
Alignment explanation
Indices: 32360439--32360666 Score: 375
Period size: 116 Copynumber: 2.0 Consensus size: 116
32360429 CAATATAGAA
* * *
32360439 ACGCCAAATCTACTATCTTCGATCTGCTTTCTGACAATACAGTGACGCCAAATCTGCTATCTTCG
1 ACGCCAAATCTACTATCTTCGATCTACTCTCTGACAATACAGGGACGCCAAATCTGCTATCTTCG
* *
32360504 ATCTGCTCTCTGACAATACAGAGACGCCAAATCTACTATCTTTGATCAGAG
66 ATCTGCTCCCTGACAATACAGAGACGCCAAATCTACTATCTTCGATCAGAG
*
32360555 ACGCCAAATCTACTATCTTTGATCTACTCTCTGACAATACAGGGACGCCAAATCTGCTATCTTCG
1 ACGCCAAATCTACTATCTTCGATCTACTCTCTGACAATACAGGGACGCCAAATCTGCTATCTTCG
* * *
32360620 ATCTGCTCCCTGACAATACAGGGGCGCCAAATCTATTATCTTCGATC
66 ATCTGCTCCCTGACAATACAGAGACGCCAAATCTACTATCTTCGATC
32360667 TGCTCTCTAA
Statistics
Matches: 103, Mismatches: 9, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
116 103 1.00
ACGTcount: A:0.28, C:0.29, G:0.15, T:0.29
Consensus pattern (116 bp):
ACGCCAAATCTACTATCTTCGATCTACTCTCTGACAATACAGGGACGCCAAATCTGCTATCTTCG
ATCTGCTCCCTGACAATACAGAGACGCCAAATCTACTATCTTCGATCAGAG
Found at i:32360662 original size:160 final size:160
Alignment explanation
Indices: 32360391--32360697 Score: 454
Period size: 160 Copynumber: 1.9 Consensus size: 160
32360381 CTGACAATAT
* * * *
32360391 AGAGACGTCAATCCTACTATCTTCGATCTGCTCTCTTACAATATAGAAACGCCAAATCTACTATC
1 AGAGACGCCAATCCTACTATCTTCGATCTACTCTCTGACAATACAGAAACGCCAAATCTACTATC
** * * *
32360456 TTCGATCTGCTTTCTGACAATACAGTGACGCCAAATCTGCTATCTTCGATCTGCTCTCTGACAAT
66 TTCGATCTGCTCCCTGACAATACAGGGACGCCAAATCTACTATCTTCGATCTGCTCTCTAACAAT
32360521 ACAGAGACGCCAAATCTACTATCTTTGATC
131 ACAGAGACGCCAAATCTACTATCTTTGATC
* ** *
32360551 AGAGACGCCAAAT-CTACTATCTTTGATCTACTCTCTGACAATACAGGGACGCCAAATCTGCTAT
1 AGAGACGCC-AATCCTACTATCTTCGATCTACTCTCTGACAATACAGAAACGCCAAATCTACTAT
* *
32360615 CTTCGATCTGCTCCCTGACAATACAGGGGCGCCAAATCTATTATCTTCGATCTGCTCTCTAACAA
65 CTTCGATCTGCTCCCTGACAATACAGGGACGCCAAATCTACTATCTTCGATCTGCTCTCTAACAA
*
32360680 TACAGGGACGCCAAATCT
130 TACAGAGACGCCAAATCT
32360698 GTTATCTTCG
Statistics
Matches: 130, Mismatches: 16, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
160 127 0.98
161 3 0.02
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.29
Consensus pattern (160 bp):
AGAGACGCCAATCCTACTATCTTCGATCTACTCTCTGACAATACAGAAACGCCAAATCTACTATC
TTCGATCTGCTCCCTGACAATACAGGGACGCCAAATCTACTATCTTCGATCTGCTCTCTAACAAT
ACAGAGACGCCAAATCTACTATCTTTGATC
Found at i:32360706 original size:204 final size:205
Alignment explanation
Indices: 32360354--32360750 Score: 582
Period size: 204 Copynumber: 1.9 Consensus size: 205
32360344 TACAGAGATA
* * * * *
32360354 CCAAATCTGCTATCTTCGATTTTCTCTCTGACAATATAGAGACGTCAATCCTACTATCTTCGATC
1 CCAAATCTACTATCTTCGATCTACTCTCTGACAATACAGAGACGCCAATCCTACTATCTTCGATC
* * * * * *
32360419 TGCTCTCTTACAATATAGAAACGCCAAATCTACTATCTTCGATCTGCTTTCTGACAATACAGTGA
66 TGCTCCCTGACAATACAGAAACGCCAAATCTACTATCTTCGATCTGCTCTCTAACAATACAGGGA
*
32360484 CGCCAAATCTGCTATCTTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCTACT-ATCTTTG
131 CGCCAAATCTGCTATCTTCGATCTGCTCTCTGACAATACAGAGACACCAAATCTACTAATCTTTG
32360548 ATCAGAGACG
196 ATCAGAGACG
* * *
32360558 CCAAATCTACTATCTTTGATCTACTCTCTGACAATACAGGGACGCCAAAT-CTGCTATCTTCGAT
1 CCAAATCTACTATCTTCGATCTACTCTCTGACAATACAGAGACGCC-AATCCTACTATCTTCGAT
*** *
32360622 CTGCTCCCTGACAATACAGGGGCGCCAAATCTATTATCTTCGATCTGCTCTCTAACAATACAGGG
65 CTGCTCCCTGACAATACAGAAACGCCAAATCTACTATCTTCGATCTGCTCTCTAACAATACAGGG
* *
32360687 ACGCCAAATCTGTTATCTTCGATCTGCTCTCTGACAATACAGAGACATCAAATCTACTAATCTT
130 ACGCCAAATCTGCTATCTTCGATCTGCTCTCTGACAATACAGAGACACCAAATCTACTAATCTT
32360751 CGATATGCTC
Statistics
Matches: 170, Mismatches: 21, Indels: 3
0.88 0.11 0.02
Matches are distributed among these distances:
204 162 0.95
205 8 0.05
ACGTcount: A:0.28, C:0.27, G:0.14, T:0.30
Consensus pattern (205 bp):
CCAAATCTACTATCTTCGATCTACTCTCTGACAATACAGAGACGCCAATCCTACTATCTTCGATC
TGCTCCCTGACAATACAGAAACGCCAAATCTACTATCTTCGATCTGCTCTCTAACAATACAGGGA
CGCCAAATCTGCTATCTTCGATCTGCTCTCTGACAATACAGAGACACCAAATCTACTAATCTTTG
ATCAGAGACG
Found at i:32360931 original size:28 final size:28
Alignment explanation
Indices: 32360896--32361013 Score: 107
Period size: 28 Copynumber: 4.0 Consensus size: 28
32360886 ATCTGCTCTT
*
32360896 TGACAATACAGAGATGCCAAATCTGCTA
1 TGACAATACAGAGACGCCAAATCTGCTA
32360924 TGACAATACAGAGACGCCAAATCTGCTA
1 TGACAATACAGAGACGCCAAATCTGCTA
32360952 TGCTCTCTGACAATACAGAGACGCCAAATCT-C--
1 -------TGACAATACAGAGACGCCAAATCTGCTA
***
32360984 TGACAATATCTTTGACGCCAAATCTGCTA
1 TGACAATA-CAGAGACGCCAAATCTGCTA
32361013 T
1 T
32361014 CTTTAAGATC
Statistics
Matches: 75, Mismatches: 4, Indels: 21
0.75 0.04 0.21
Matches are distributed among these distances:
25 8 0.11
26 13 0.17
27 1 0.01
28 27 0.36
29 1 0.01
34 1 0.01
35 24 0.32
ACGTcount: A:0.35, C:0.25, G:0.16, T:0.24
Consensus pattern (28 bp):
TGACAATACAGAGACGCCAAATCTGCTA
Found at i:32360979 original size:63 final size:61
Alignment explanation
Indices: 32360889--32361013 Score: 171
Period size: 63 Copynumber: 2.0 Consensus size: 61
32360879 ATTTTCAATC
* *
32360889 TGCTCTTTGACAATACAGAGATGCCAAATCTGCTATGACAATA-CAGAGACGCCAAATCTGCTA
1 TGCTCTCTGACAATACAGAGACGCCAAATCT-C--TGACAATATCAGAGACGCCAAATCTGCTA
***
32360952 TGCTCTCTGACAATACAGAGACGCCAAATCTCTGACAATATCTTTGACGCCAAATCTGCTA
1 TGCTCTCTGACAATACAGAGACGCCAAATCTCTGACAATATCAGAGACGCCAAATCTGCTA
32361013 T
1 T
32361014 CTTTAAGATC
Statistics
Matches: 56, Mismatches: 5, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
60 8 0.14
61 18 0.32
62 1 0.02
63 29 0.52
ACGTcount: A:0.33, C:0.26, G:0.16, T:0.26
Consensus pattern (61 bp):
TGCTCTCTGACAATACAGAGACGCCAAATCTCTGACAATATCAGAGACGCCAAATCTGCTA
Found at i:32367294 original size:76 final size:76
Alignment explanation
Indices: 32367202--32367349 Score: 278
Period size: 76 Copynumber: 1.9 Consensus size: 76
32367192 ATGAATAATG
*
32367202 ACTTTCGGTACCATTGGCATTTCAACTTCATTATTTCTTGGTAAAGAAATAATGATCTTTGGTCG
1 ACTTTCGGTACCATTGGCATTTCAACTTCATTATTTCTTGATAAAGAAATAATGATCTTTGGTCG
32367267 GTTTTGAAGAA
66 GTTTTGAAGAA
*
32367278 ACTTTCGGTACCATTGGCATTTCAACTTTATTATTTCTTGATAAAGAAATAATGATCTTTGGTCG
1 ACTTTCGGTACCATTGGCATTTCAACTTCATTATTTCTTGATAAAGAAATAATGATCTTTGGTCG
32367343 GTTTTGA
66 GTTTTGA
32367350 TTCTTCAGTT
Statistics
Matches: 70, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
76 70 1.00
ACGTcount: A:0.27, C:0.14, G:0.18, T:0.41
Consensus pattern (76 bp):
ACTTTCGGTACCATTGGCATTTCAACTTCATTATTTCTTGATAAAGAAATAATGATCTTTGGTCG
GTTTTGAAGAA
Found at i:32372973 original size:16 final size:16
Alignment explanation
Indices: 32372945--32372995 Score: 52
Period size: 16 Copynumber: 3.2 Consensus size: 16
32372935 ATAAGCAAAT
*
32372945 TATAAA-CATATAAAA
1 TATAAATCAAATAAAA
32372960 TATAAATCAAATAAAA
1 TATAAATCAAATAAAA
*
32372976 TA-AAATAAAAATAAAGA
1 TATAAAT-CAAATAAA-A
32372993 TAT
1 TAT
32372996 TTAAAAAATT
Statistics
Matches: 30, Mismatches: 2, Indels: 5
0.81 0.05 0.14
Matches are distributed among these distances:
15 10 0.33
16 17 0.57
17 3 0.10
ACGTcount: A:0.69, C:0.04, G:0.02, T:0.25
Consensus pattern (16 bp):
TATAAATCAAATAAAA
Found at i:32373352 original size:10 final size:10
Alignment explanation
Indices: 32373333--32373372 Score: 53
Period size: 10 Copynumber: 3.8 Consensus size: 10
32373323 TGTATGTAAT
32373333 ATAATATATA
1 ATAATATATA
*
32373343 ATAATGTATA
1 ATAATATATA
32373353 ATAATATAATAA
1 ATAATAT-AT-A
32373365 ATAATATA
1 ATAATATA
32373373 CAAAGATAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
10 15 0.58
11 3 0.12
12 8 0.31
ACGTcount: A:0.60, C:0.00, G:0.03, T:0.38
Consensus pattern (10 bp):
ATAATATATA
Found at i:32373357 original size:25 final size:25
Alignment explanation
Indices: 32373302--32373370 Score: 88
Period size: 25 Copynumber: 2.8 Consensus size: 25
32373292 GAATATATAA
32373302 AATAATATATATATAGTAA-AATGTAT
1 AATAATATA-ATATA-TAATAATGTAT
*
32373328 -GTAATATAATATATAATAATGTAT
1 AATAATATAATATATAATAATGTAT
*
32373352 AATAATATAATAAATAATA
1 AATAATATAATATATAATA
32373371 TACAAAGATA
Statistics
Matches: 38, Mismatches: 3, Indels: 5
0.83 0.07 0.11
Matches are distributed among these distances:
23 3 0.08
24 12 0.32
25 23 0.61
ACGTcount: A:0.57, C:0.00, G:0.06, T:0.38
Consensus pattern (25 bp):
AATAATATAATATATAATAATGTAT
Found at i:32375237 original size:28 final size:28
Alignment explanation
Indices: 32375206--32375317 Score: 82
Period size: 29 Copynumber: 3.9 Consensus size: 28
32375196 ATACGTGCAT
* *
32375206 ATGGCCCACTAGGCTCAATCTTATTCAA
1 ATGGCCCACTAGGCCCAATCATATTCAA
* * **
32375234 ATGGGCCATCT-GGCCCAGTTCATATTCTT
1 ATGGCCCA-CTAGGCCCA-ATCATATTCAA
** *
32375263 ATGGCCCACTAGGCCCAATTCACCTTCAT
1 ATGGCCCACTAGGCCCAA-TCATATTCAA
* *
32375292 ATGGCCTATTAGGCCCAAATCATATT
1 ATGGCCCACTAGGCCC-AATCATATT
32375318 ATACTCATGC
Statistics
Matches: 64, Mismatches: 15, Indels: 9
0.73 0.17 0.10
Matches are distributed among these distances:
28 14 0.22
29 48 0.75
30 2 0.03
ACGTcount: A:0.25, C:0.29, G:0.16, T:0.29
Consensus pattern (28 bp):
ATGGCCCACTAGGCCCAATCATATTCAA
Found at i:32375571 original size:24 final size:24
Alignment explanation
Indices: 32375542--32375594 Score: 70
Period size: 24 Copynumber: 2.2 Consensus size: 24
32375532 CTTTCGATGG
* *
32375542 CTTTTCGGCTTTTCAGCATTTCGA
1 CTTTTCGACTTTTCAGCATTTCAA
* *
32375566 CTTTTCGACTTTTCGGTATTTCAA
1 CTTTTCGACTTTTCAGCATTTCAA
32375590 CTTTT
1 CTTTT
32375595 GCCGATTCAT
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.13, C:0.23, G:0.13, T:0.51
Consensus pattern (24 bp):
CTTTTCGACTTTTCAGCATTTCAA
Found at i:32392331 original size:18 final size:18
Alignment explanation
Indices: 32392292--32392424 Score: 200
Period size: 18 Copynumber: 7.5 Consensus size: 18
32392282 AATGATATGT
32392292 AATCTTAGATATGA-TAC
1 AATCTTAGATATGATTAC
* *
32392309 AATCTTAAATATGATTGC
1 AATCTTAGATATGATTAC
32392327 AATCTTAGATATGA-TAC
1 AATCTTAGATATGATTAC
*
32392344 AATCTTAGATATGATTGC
1 AATCTTAGATATGATTAC
32392362 AATCTTAGATATGA-TAC
1 AATCTTAGATATGATTAC
*
32392379 AATCTTAGATATGATTGC
1 AATCTTAGATATGATTAC
32392397 AATCTTAGATATGATATAC
1 AATCTTAGATATGAT-TAC
32392416 AATCTTAGA
1 AATCTTAGA
32392425 AGATATGATT
Statistics
Matches: 104, Mismatches: 8, Indels: 6
0.88 0.07 0.05
Matches are distributed among these distances:
17 45 0.43
18 48 0.46
19 11 0.11
ACGTcount: A:0.39, C:0.11, G:0.13, T:0.37
Consensus pattern (18 bp):
AATCTTAGATATGATTAC
Found at i:32392331 original size:35 final size:35
Alignment explanation
Indices: 32392283--32392424 Score: 239
Period size: 35 Copynumber: 4.0 Consensus size: 35
32392273 ATAAACTTCA
* *
32392283 ATGATATGTAATCTTAGATATGATACAATCTTAAAT
1 ATGAT-TGCAATCTTAGATATGATACAATCTTAGAT
32392319 ATGATTGCAATCTTAGATATGATACAATCTTAGAT
1 ATGATTGCAATCTTAGATATGATACAATCTTAGAT
32392354 ATGATTGCAATCTTAGATATGATACAATCTTAGAT
1 ATGATTGCAATCTTAGATATGATACAATCTTAGAT
32392389 ATGATTGCAATCTTAGATATGATATACAATCTTAGA
1 ATGATTGCAATCTTAGATATG--ATACAATCTTAGA
32392425 AGATATGATT
Statistics
Matches: 102, Mismatches: 2, Indels: 3
0.95 0.02 0.03
Matches are distributed among these distances:
35 84 0.82
36 5 0.05
37 13 0.13
ACGTcount: A:0.39, C:0.11, G:0.13, T:0.37
Consensus pattern (35 bp):
ATGATTGCAATCTTAGATATGATACAATCTTAGAT
Found at i:32392744 original size:12 final size:11
Alignment explanation
Indices: 32392729--32392762 Score: 50
Period size: 12 Copynumber: 2.9 Consensus size: 11
32392719 TATTTTTAAT
32392729 TTATTATATATA
1 TTATT-TATATA
32392741 TTATTTATTATA
1 TTATTTA-TATA
32392753 TTATTTATAT
1 TTATTTATAT
32392763 TTTCAAAATT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
11 5 0.24
12 16 0.76
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (11 bp):
TTATTTATATA
Found at i:32392754 original size:21 final size:21
Alignment explanation
Indices: 32392730--32392838 Score: 61
Period size: 21 Copynumber: 5.3 Consensus size: 21
32392720 ATTTTTAATT
32392730 TATTATATATATTATTTATTA
1 TATTATATATATTATTTATTA
* *
32392751 TATTATTTATATT-TTCA--A
1 TATTATATATATTATTTATTA
* * *
32392769 AATT-TGTAAATTA-TTATTA
1 TATTATATATATTATTTATTA
* *
32392788 TA-TATTATATTTTAACTTATATA
1 TATTA-TATATATT-ATTTAT-TA
*
32392811 TCTTATATATA-TATTTATTTA
1 TATTATATATATTATTTA-TTA
32392832 TATTATA
1 TATTATA
32392839 CATTATTTTA
Statistics
Matches: 64, Mismatches: 14, Indels: 20
0.65 0.14 0.20
Matches are distributed among these distances:
17 8 0.12
18 5 0.08
19 2 0.03
20 8 0.12
21 25 0.39
22 6 0.09
23 8 0.12
24 2 0.03
ACGTcount: A:0.38, C:0.03, G:0.01, T:0.59
Consensus pattern (21 bp):
TATTATATATATTATTTATTA
Found at i:32392760 original size:16 final size:16
Alignment explanation
Indices: 32392727--32392757 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
32392717 CTTATTTTTA
32392727 ATTTATTATATATATT
1 ATTTATTATATATATT
32392743 ATTTATTATAT-TATT
1 ATTTATTATATATATT
32392758 TATATTTTCA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 4 0.27
16 11 0.73
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (16 bp):
ATTTATTATATATATT
Found at i:32392795 original size:7 final size:7
Alignment explanation
Indices: 32392778--32392884 Score: 50
Period size: 7 Copynumber: 15.7 Consensus size: 7
32392768 AAATTTGTAA
32392778 ATTAT-T
1 ATTATAT
32392784 ATTATAT
1 ATTATAT
32392791 ATTATAT
1 ATTATAT
32392798 -TT-TA-
1 ATTATAT
32392802 ACTTATAT
1 A-TTATAT
32392810 ATCTTATAT
1 A--TTATAT
*
32392819 ATATATTT
1 AT-TATAT
32392827 ATT-TAT
1 ATTATAT
*
32392833 ATTATAC
1 ATTATAT
32392840 ATTAT-T
1 ATTATAT
* *
32392846 -TTAAAA
1 ATTATAT
*
32392852 ACTTACAT
1 A-TTATAT
*
32392860 -TTTTAT
1 ATTATAT
32392866 ATTATAT
1 ATTATAT
*
32392873 ATTATAA
1 ATTATAT
32392880 ATTAT
1 ATTAT
32392885 TTCATTTATT
Statistics
Matches: 77, Mismatches: 12, Indels: 23
0.69 0.11 0.21
Matches are distributed among these distances:
5 5 0.06
6 18 0.23
7 35 0.45
8 11 0.14
9 8 0.10
ACGTcount: A:0.39, C:0.05, G:0.00, T:0.56
Consensus pattern (7 bp):
ATTATAT
Found at i:32395942 original size:14 final size:16
Alignment explanation
Indices: 32395923--32395954 Score: 50
Period size: 14 Copynumber: 2.1 Consensus size: 16
32395913 TCGATACCTT
32395923 TTTGTATT-CAT-GCA
1 TTTGTATTACATCGCA
32395937 TTTGTATTACATCGCA
1 TTTGTATTACATCGCA
32395953 TT
1 TT
32395955 ATATGCATTT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 8 0.50
15 3 0.19
16 5 0.31
ACGTcount: A:0.22, C:0.16, G:0.12, T:0.50
Consensus pattern (16 bp):
TTTGTATTACATCGCA
Found at i:32398564 original size:14 final size:14
Alignment explanation
Indices: 32398537--32398593 Score: 53
Period size: 14 Copynumber: 3.9 Consensus size: 14
32398527 TTCTATTTCA
*
32398537 AAAAAAAAGAAAAA
1 AAAAAAAAGAAAAG
32398551 AAAAGAAAAGAAAAAG
1 AAAA-AAAAG-AAAAG
*
32398567 AGAAAAAAA-TAAAG
1 A-AAAAAAAGAAAAG
*
32398581 AGAAAAAAGAAAA
1 AAAAAAAAGAAAA
32398594 AAATGGAGAG
Statistics
Matches: 35, Mismatches: 4, Indels: 8
0.74 0.09 0.17
Matches are distributed among these distances:
13 6 0.17
14 12 0.34
15 5 0.14
16 9 0.26
17 3 0.09
ACGTcount: A:0.84, C:0.00, G:0.14, T:0.02
Consensus pattern (14 bp):
AAAAAAAAGAAAAG
Found at i:32398566 original size:21 final size:21
Alignment explanation
Indices: 32398536--32398596 Score: 79
Period size: 21 Copynumber: 2.9 Consensus size: 21
32398526 CTTCTATTTC
32398536 AAAA-AAAAAGAAAAAAAAAG
1 AAAAGAAAAAGAAAAAAAAAG
* *
32398556 AAAAGAAAAAGAGAAAAAAAT
1 AAAAGAAAAAGAAAAAAAAAG
32398577 AAAGAGAAAAAAGAAAAAAA
1 AAA-AG-AAAAAGAAAAAAA
32398597 TGGAGAGGCC
Statistics
Matches: 35, Mismatches: 3, Indels: 3
0.85 0.07 0.07
Matches are distributed among these distances:
20 4 0.11
21 17 0.49
22 2 0.06
23 12 0.34
ACGTcount: A:0.85, C:0.00, G:0.13, T:0.02
Consensus pattern (21 bp):
AAAAGAAAAAGAAAAAAAAAG
Found at i:32398597 original size:21 final size:22
Alignment explanation
Indices: 32398539--32398597 Score: 84
Period size: 22 Copynumber: 2.7 Consensus size: 22
32398529 CTATTTCAAA
*
32398539 AAAAAAGAAAAAAAAAGAAAAG
1 AAAAAAGAAAAAAATAGAAAAG
*
32398561 AAAAAGAGAAAAAAATA-AAGAG
1 AAAAA-AGAAAAAAATAGAAAAG
32398583 AAAAAAGAAAAAAAT
1 AAAAAAGAAAAAAAT
32398598 GGAGAGGCCA
Statistics
Matches: 34, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
21 10 0.29
22 14 0.41
23 10 0.29
ACGTcount: A:0.83, C:0.00, G:0.14, T:0.03
Consensus pattern (22 bp):
AAAAAAGAAAAAAATAGAAAAG
Found at i:32398603 original size:21 final size:21
Alignment explanation
Indices: 32398539--32398603 Score: 76
Period size: 21 Copynumber: 3.0 Consensus size: 21
32398529 CTATTTCAAA
* *
32398539 AAAAAAGAAAAAAAAAGAAAAG
1 AAAAAAGAAAAAAATAG-AGAG
*
32398561 AAAAAGAGAAAAAAATAAAGAG
1 AAAAA-AGAAAAAAATAGAGAG
*
32398583 AAAAAAGAAAAAAATGGAGAG
1 AAAAAAGAAAAAAATAGAGAG
32398604 GCCAAGGTGA
Statistics
Matches: 37, Mismatches: 5, Indels: 3
0.82 0.11 0.07
Matches are distributed among these distances:
21 14 0.38
22 13 0.35
23 10 0.27
ACGTcount: A:0.78, C:0.00, G:0.18, T:0.03
Consensus pattern (21 bp):
AAAAAAGAAAAAAATAGAGAG
Found at i:32399614 original size:44 final size:44
Alignment explanation
Indices: 32399566--32399652 Score: 131
Period size: 44 Copynumber: 2.0 Consensus size: 44
32399556 GATTTCAGCA
* **
32399566 TGGCATCCCTGTGTTTATAGGGAACA-AGTTGAAGATAGCAGATT
1 TGGCATCCCCGTGTTTATAGGGAACAGA-TCAAAGATAGCAGATT
32399610 TGGCATCCCCGTGTTTATAGGGAACAGATCAAAGATAGCAGAT
1 TGGCATCCCCGTGTTTATAGGGAACAGATCAAAGATAGCAGAT
32399653 CTAACCTTCA
Statistics
Matches: 39, Mismatches: 3, Indels: 2
0.89 0.07 0.05
Matches are distributed among these distances:
44 38 0.97
45 1 0.03
ACGTcount: A:0.31, C:0.16, G:0.26, T:0.26
Consensus pattern (44 bp):
TGGCATCCCCGTGTTTATAGGGAACAGATCAAAGATAGCAGATT
Found at i:32399849 original size:119 final size:119
Alignment explanation
Indices: 32399638--32400118 Score: 800
Period size: 119 Copynumber: 4.0 Consensus size: 119
32399628 AGGGAACAGA
* * *
32399638 TCAAAGATAGCAGATCTAACCTTCAAATGTTTATACTGAAGCAGATCCAAGATGATTTAGCATTC
1 TCAAATATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATTC
*
32399703 TTGTGTTTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGATGTTC
66 TTGTGTTTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTC
* *
32399757 TCAAATATAGCAGATCTAACCTTCAGATGCTTATACTGAAGCAGATCCAAGATGATTTGGTATTC
1 TCAAATATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATTC
32399822 TTGTGTTTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTC
66 TTGTGTTTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTC
* *
32399876 TCAAATATAACAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGTATTC
1 TCAAATATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATTC
*
32399941 TTGTGTTTACAAGAAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTC
66 TTGTGTTTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTC
* * *
32399995 TCAAATATAGAAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGGTTTGGCATCC
1 TCAAATATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATTC
* * * * * *
32400060 TTGTGCTTACAAGGAACAAATCGATGACATTGCAGATATGACTCTCAAATGTTC
66 TTGTGTTTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTC
32400114 TCAAA
1 TCAAA
32400119 CAGACTCAAG
Statistics
Matches: 341, Mismatches: 21, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
119 341 1.00
ACGTcount: A:0.34, C:0.18, G:0.18, T:0.30
Consensus pattern (119 bp):
TCAAATATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATTC
TTGTGTTTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTC
Found at i:32400186 original size:83 final size:83
Alignment explanation
Indices: 32400042--32400394 Score: 571
Period size: 83 Copynumber: 4.2 Consensus size: 83
32400032 GAAGCAGATC
*
32400042 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGATGACATTGCAGATATGACTCTCA
1 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATTGCAGATATGACTCTCA
32400107 AATGTTCTCAAACAGACT
66 AATGTTCTCAAACAGACT
* * *
32400125 CAAGCTGGTTTGGCATCCTTGTGCTTATAAGGAACAAATCGAGGACATTGCGGATATGACTCTCA
1 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATTGCAGATATGACTCTCA
32400190 AATGTTCTCAAACAGACT
66 AATGTTCTCAAACAGACT
* * *
32400208 CAAGATGGTTTGGCATCCTTATGCTTACAAGGAACAAATCGAGGACCTTGCAGACATGACTCTCA
1 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATTGCAGATATGACTCTCA
*
32400273 AATGTTCTCAAATAGACT
66 AATGTTCTCAAACAGACT
* * * *
32400291 CAAGATGGTTTAGGCATCCTTGTGCTTACAAGGAACAAGTCGAGGACCTTGCCGATATGATTCTC
1 CAAGATGGTTT-GGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATTGCAGATATGACTCTC
32400356 AAATGTTCTCAAACAGACT
65 AAATGTTCTCAAACAGACT
* *
32400375 CAAGATGATTTGACATCCTT
1 CAAGATGGTTTGGCATCCTT
32400395 ACAAATCGAA
Statistics
Matches: 250, Mismatches: 19, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
83 174 0.70
84 76 0.30
ACGTcount: A:0.31, C:0.21, G:0.20, T:0.28
Consensus pattern (83 bp):
CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATTGCAGATATGACTCTCA
AATGTTCTCAAACAGACT
Found at i:32400808 original size:17 final size:17
Alignment explanation
Indices: 32400788--32400937 Score: 219
Period size: 17 Copynumber: 8.5 Consensus size: 17
32400778 AATGATATGT
32400788 AATCTTAGATATGATAC
1 AATCTTAGATATGATAC
* *
32400805 AATCTTAAATATGATTGC
1 AATCTTAGATATGA-TAC
32400823 AATCTTAGATATGATAC
1 AATCTTAGATATGATAC
*
32400840 AATCTTAGATATGATTGC
1 AATCTTAGATATGA-TAC
32400858 AATCTTAGATATGATAC
1 AATCTTAGATATGATAC
32400875 AATCTTAGATATGATAC
1 AATCTTAGATATGATAC
*
32400892 AATCTTAGATATGATTGC
1 AATCTTAGATATGA-TAC
32400910 AATCTTAGATATGATATAC
1 AATCTTAGATATG--ATAC
32400929 AATCTTAGA
1 AATCTTAGA
32400938 AGATATGATT
Statistics
Matches: 120, Mismatches: 8, Indels: 8
0.88 0.06 0.06
Matches are distributed among these distances:
17 62 0.52
18 46 0.38
19 11 0.09
20 1 0.01
ACGTcount: A:0.39, C:0.11, G:0.13, T:0.37
Consensus pattern (17 bp):
AATCTTAGATATGATAC
Found at i:32400828 original size:35 final size:35
Alignment explanation
Indices: 32400779--32400937 Score: 239
Period size: 35 Copynumber: 4.5 Consensus size: 35
32400769 ATAATCTTTA
* *
32400779 ATGATATGTAATCTTAGATATGATACAATCTTAAAT
1 ATGAT-TGCAATCTTAGATATGATACAATCTTAGAT
32400815 ATGATTGCAATCTTAGATATGATACAATCTTAGAT
1 ATGATTGCAATCTTAGATATGATACAATCTTAGAT
32400850 ATGATTGCAATCTTAGATATGATACAATCTTAGAT
1 ATGATTGCAATCTTAGATATGATACAATCTTAGAT
* *
32400885 ATGA-TACAATCTTAGATATGATTGCAATCTTAGAT
1 ATGATTGCAATCTTAGATATGA-TACAATCTTAGAT
*
32400920 ATGATATACAATCTTAGA
1 ATGAT-TGCAATCTTAGA
32400938 AGATATGATT
Statistics
Matches: 116, Mismatches: 4, Indels: 5
0.93 0.03 0.04
Matches are distributed among these distances:
34 16 0.14
35 83 0.72
36 5 0.04
37 12 0.10
ACGTcount: A:0.39, C:0.11, G:0.13, T:0.37
Consensus pattern (35 bp):
ATGATTGCAATCTTAGATATGATACAATCTTAGAT
Found at i:32400828 original size:52 final size:52
Alignment explanation
Indices: 32400781--32400937 Score: 232
Period size: 52 Copynumber: 3.0 Consensus size: 52
32400771 AATCTTTAAT
* * *
32400781 GATATG-T-AATCTTAGATATGA-TACAATCTTAAATATGATTGCAATCTTA
1 GATATGATAAATCTTAGATATGATTGCAATCTTAGATATGATTACAATCTTA
32400830 GATATGATACAATCTTAGATATGATTGCAATCTTAGATATGA-TACAATCTTA
1 GATATGATA-AATCTTAGATATGATTGCAATCTTAGATATGATTACAATCTTA
32400882 GATATGATACAATCTTAGATATGATTGCAATCTTAGATATGATATACAATCTTA
1 GATATGATA-AATCTTAGATATGATTGCAATCTTAGATATGAT-TACAATCTTA
32400936 GA
1 GA
32400938 AGATATGATT
Statistics
Matches: 99, Mismatches: 3, Indels: 7
0.91 0.03 0.06
Matches are distributed among these distances:
49 6 0.06
50 1 0.01
52 65 0.66
53 15 0.15
54 12 0.12
ACGTcount: A:0.39, C:0.11, G:0.13, T:0.37
Consensus pattern (52 bp):
GATATGATAAATCTTAGATATGATTGCAATCTTAGATATGATTACAATCTTA
Found at i:32401257 original size:12 final size:11
Alignment explanation
Indices: 32401242--32401275 Score: 50
Period size: 12 Copynumber: 2.9 Consensus size: 11
32401232 TATTTTTAAT
32401242 TTATTATATATA
1 TTATT-TATATA
32401254 TTATTTATTATA
1 TTATTTA-TATA
32401266 TTATTTATAT
1 TTATTTATAT
32401276 TTTCAAAATT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
11 5 0.24
12 16 0.76
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (11 bp):
TTATTTATATA
Found at i:32401267 original size:21 final size:21
Alignment explanation
Indices: 32401243--32401348 Score: 59
Period size: 21 Copynumber: 5.3 Consensus size: 21
32401233 ATTTTTAATT
32401243 TATTATATATATTATTTATTA
1 TATTATATATATTATTTATTA
* *
32401264 TATTATTTATATT-TTCA--A
1 TATTATATATATTATTTATTA
* * *
32401282 AATT-TGTAAATTA-TTA-TA
1 TATTATATATATTATTTATTA
*
32401300 TATTATAT-T-TTAACTTATATA
1 TATTATATATATT-ATTTAT-TA
*
32401321 TCTTATATAT-TTATTTATTTA
1 TATTATATATATTATTTA-TTA
32401342 TATTATA
1 TATTATA
32401349 CATTATTTTA
Statistics
Matches: 64, Mismatches: 12, Indels: 18
0.68 0.13 0.19
Matches are distributed among these distances:
17 10 0.16
18 9 0.14
19 5 0.08
20 3 0.05
21 33 0.52
22 4 0.06
ACGTcount: A:0.37, C:0.03, G:0.01, T:0.59
Consensus pattern (21 bp):
TATTATATATATTATTTATTA
Found at i:32401273 original size:16 final size:16
Alignment explanation
Indices: 32401240--32401270 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
32401230 CTTATTTTTA
32401240 ATTTATTATATATATT
1 ATTTATTATATATATT
32401256 ATTTATTATAT-TATT
1 ATTTATTATATATATT
32401271 TATATTTTCA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 4 0.27
16 11 0.73
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (16 bp):
ATTTATTATATATATT
Found at i:32401735 original size:3 final size:3
Alignment explanation
Indices: 32401727--32401776 Score: 91
Period size: 3 Copynumber: 16.3 Consensus size: 3
32401717 ATATGTTACA
32401727 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT ATAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT -TAT
32401773 TAT T
1 TAT T
32401777 GTATTTGTTT
Statistics
Matches: 46, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
3 43 0.93
4 3 0.07
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
TAT
Found at i:32405569 original size:10 final size:10
Alignment explanation
Indices: 32405556--32405596 Score: 64
Period size: 10 Copynumber: 4.1 Consensus size: 10
32405546 AAAAATACCA
32405556 ATAAATAAAG
1 ATAAATAAAG
*
32405566 ATAATTAAAG
1 ATAAATAAAG
*
32405576 ATAAATAAGG
1 ATAAATAAAG
32405586 ATAAATAAAG
1 ATAAATAAAG
32405596 A
1 A
32405597 CAAAAGCTAG
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
10 27 1.00
ACGTcount: A:0.66, C:0.00, G:0.12, T:0.22
Consensus pattern (10 bp):
ATAAATAAAG
Found at i:32405613 original size:22 final size:22
Alignment explanation
Indices: 32405583--32405627 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
32405573 AAGATAAATA
*
32405583 AGGATAAATAAAGACAAAAGCT
1 AGGACAAATAAAGACAAAAGCT
*
32405605 AGGACAAATAAAGATAAAAGCT
1 AGGACAAATAAAGACAAAAGCT
32405627 A
1 A
32405628 AAATTAAATC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.60, C:0.09, G:0.18, T:0.13
Consensus pattern (22 bp):
AGGACAAATAAAGACAAAAGCT
Found at i:32406271 original size:24 final size:25
Alignment explanation
Indices: 32406239--32406286 Score: 71
Period size: 24 Copynumber: 1.9 Consensus size: 25
32406229 TAATACATCA
32406239 TTTCTTCTTCTTCT-TTTCTTTTTT
1 TTTCTTCTTCTTCTCTTTCTTTTTT
*
32406263 TTTCTTCTTTTTCTCCTTTCTTTT
1 TTTCTTCTTCTTCT-CTTTCTTTT
32406287 AAAAAAATTA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 13 0.62
26 8 0.38
ACGTcount: A:0.00, C:0.23, G:0.00, T:0.77
Consensus pattern (25 bp):
TTTCTTCTTCTTCTCTTTCTTTTTT
Found at i:32407605 original size:20 final size:19
Alignment explanation
Indices: 32407580--32407643 Score: 64
Period size: 20 Copynumber: 3.5 Consensus size: 19
32407570 ATATCCAAAC
*
32407580 AAAATAAAGTAATAATTAAT-
1 AAAATAAAATAATAA--AATA
32407600 AAAATAAAATAATAAAATA
1 AAAATAAAATAATAAAATA
*
32407619 AAAAT-AAA-AAT-AAAGA
1 AAAATAAAATAATAAAATA
32407635 AAAATAAAA
1 AAAATAAAA
32407644 ATTAGGTTGC
Statistics
Matches: 40, Mismatches: 2, Indels: 7
0.82 0.04 0.14
Matches are distributed among these distances:
16 9 0.22
17 6 0.15
18 6 0.15
19 5 0.12
20 14 0.35
ACGTcount: A:0.77, C:0.00, G:0.03, T:0.20
Consensus pattern (19 bp):
AAAATAAAATAATAAAATA
Found at i:32411401 original size:10 final size:10
Alignment explanation
Indices: 32411374--32411454 Score: 85
Period size: 10 Copynumber: 7.9 Consensus size: 10
32411364 TTAAATTCTA
32411374 AAAGATAAAT
1 AAAGATAAAT
32411384 ACAA-ATAAAT
1 A-AAGATAAAT
*
32411394 AAAGATAATT
1 AAAGATAAAT
32411404 AAAGATAAAT
1 AAAGATAAAT
*
32411414 AAGGATAAAT
1 AAAGATAAAT
32411424 AAAGATAAA-
1 AAAGATAAAT
*
32411433 AGCTAGGATAAAT
1 A---AAGATAAAT
32411446 AAAGATAAA
1 AAAGATAAA
32411455 AGCTAAAATT
Statistics
Matches: 59, Mismatches: 6, Indels: 12
0.77 0.08 0.16
Matches are distributed among these distances:
9 3 0.05
10 46 0.78
11 2 0.03
12 7 0.12
13 1 0.02
ACGTcount: A:0.65, C:0.02, G:0.12, T:0.20
Consensus pattern (10 bp):
AAAGATAAAT
Found at i:32411443 original size:22 final size:22
Alignment explanation
Indices: 32411415--32411459 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
32411405 AAGATAAATA
32411415 AGGATAAATAAAGATAAAAGCT
1 AGGATAAATAAAGATAAAAGCT
32411437 AGGATAAATAAAGATAAAAGCT
1 AGGATAAATAAAGATAAAAGCT
32411459 A
1 A
32411460 AAATTAAATC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.60, C:0.04, G:0.18, T:0.18
Consensus pattern (22 bp):
AGGATAAATAAAGATAAAAGCT
Found at i:32420692 original size:26 final size:26
Alignment explanation
Indices: 32420663--32420770 Score: 171
Period size: 26 Copynumber: 4.2 Consensus size: 26
32420653 TGAAATTCCC
*
32420663 ATCATGGAACATTTACCTAAATCATT
1 ATCATGGAACATTTACCTAAACCATT
*
32420689 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAAACCATT
* *
32420715 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAAACCATT
*
32420741 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAAACCATT
32420767 ATCA
1 ATCA
32420771 ATTTGTATCA
Statistics
Matches: 76, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 76 1.00
ACGTcount: A:0.36, C:0.23, G:0.07, T:0.33
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAAACCATT
Found at i:32420741 original size:52 final size:52
Alignment explanation
Indices: 32420663--32420770 Score: 191
Period size: 52 Copynumber: 2.1 Consensus size: 52
32420653 TGAAATTCCC
32420663 ATCATGGAACATTTACCTAAATCATTATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAAATCATTATCATGGAACATTTACCTAACCCATT
*
32420715 ATCATGGAATATTTACCT-AATCCATTATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAAAT-CATTATCATGGAACATTTACCTAACCCATT
32420767 ATCA
1 ATCA
32420771 ATTTGTATCA
Statistics
Matches: 54, Mismatches: 1, Indels: 2
0.95 0.02 0.04
Matches are distributed among these distances:
51 3 0.06
52 51 0.94
ACGTcount: A:0.36, C:0.23, G:0.07, T:0.33
Consensus pattern (52 bp):
ATCATGGAACATTTACCTAAATCATTATCATGGAACATTTACCTAACCCATT
Found at i:32430593 original size:23 final size:23
Alignment explanation
Indices: 32430567--32430662 Score: 77
Period size: 23 Copynumber: 4.1 Consensus size: 23
32430557 ATAGCACTTA
*
32430567 AAACACTTCAATTTATAACATTT
1 AAACAATTCAATTTATAACATTT
** * * *
32430590 AAACACCTCCATTTACAACAATT
1 AAACAATTCAATTTATAACATTT
*
32430613 AAACAATTCAAATTTATAGTC-TTT
1 AAACAATTC-AATTTATA-ACATTT
** *
32430637 AGTCAATTCAATTCATAACATTT
1 AAACAATTCAATTTATAACATTT
32430660 AAA
1 AAA
32430663 TCCTCATTTA
Statistics
Matches: 54, Mismatches: 16, Indels: 6
0.71 0.21 0.08
Matches are distributed among these distances:
22 1 0.02
23 37 0.69
24 15 0.28
25 1 0.02
ACGTcount: A:0.44, C:0.19, G:0.02, T:0.35
Consensus pattern (23 bp):
AAACAATTCAATTTATAACATTT
Found at i:32431542 original size:113 final size:113
Alignment explanation
Indices: 32431386--32431600 Score: 317
Period size: 113 Copynumber: 1.9 Consensus size: 113
32431376 AAATCATCCT
*
32431386 ATTTTTCTTCCATTTAAACATCAACAGGCAGCAACAACATATAGCAATTTAAATTATTAATTTCT
1 ATTTTTCTTCCAATTAAACATCAACAGGCAGCAACAACATATAGCAATTTAAATTATTAATTTCT
* * * *
32431451 CGTAATTCAACAGCAACGAACAACAGCTATATTGAGCCTTAATCATAA
66 CCTAATTCAACAACAACAAACAACAGCTATACTGAGCCTTAATCATAA
* *
32431499 ATTTTTCTT-CAATTACAACATGC-ACAGGCAGCAGCAACTTATAGCAATTTAAATTATTAATTT
1 ATTTTTCTTCCAATTA-AACAT-CAACAGGCAGCAACAACATATAGCAATTTAAATTATTAATTT
* *
32431562 CTCCTCATTCAACAACAACAAACAGCAGCTATACTGAGC
64 CTCCTAATTCAACAACAACAAACAACAGCTATACTGAGC
32431601 ACTTTAACTA
Statistics
Matches: 91, Mismatches: 9, Indels: 4
0.88 0.09 0.04
Matches are distributed among these distances:
112 5 0.05
113 85 0.93
114 1 0.01
ACGTcount: A:0.39, C:0.22, G:0.09, T:0.30
Consensus pattern (113 bp):
ATTTTTCTTCCAATTAAACATCAACAGGCAGCAACAACATATAGCAATTTAAATTATTAATTTCT
CCTAATTCAACAACAACAAACAACAGCTATACTGAGCCTTAATCATAA
Found at i:32431607 original size:57 final size:57
Alignment explanation
Indices: 32431428--32431607 Score: 138
Period size: 57 Copynumber: 3.2 Consensus size: 57
32431418 AACAACATAT
* * * * *
32431428 AGCAATTTAAATTATTAATTTCTCGTAATTCAACAGCAACGAACAACAGCTATATTG
1 AGCAATTTAAATTATTAATTTCTCCTCATTCAACAGCAACAAACAGCAGCTATACTG
* * * * * ** *
32431485 AGC--CTT-AATCATAAATTTTTCTTCAATTACAACATGC-ACAGGCAGCAGC-A-ACTTAT
1 AGCAATTTAAATTATTAATTTCTCCTC-ATT-CAACA-GCAACAAACAGCAGCTATAC-T-G
*
32431541 AGCAATTTAAATTATTAATTTCTCCTCATTCAACAACAACAAACAGCAGCTATACTG
1 AGCAATTTAAATTATTAATTTCTCCTCATTCAACAGCAACAAACAGCAGCTATACTG
*
32431598 AGCACTTTAA
1 AGCAATTTAA
32431608 CTAACTGAAA
Statistics
Matches: 90, Mismatches: 22, Indels: 22
0.67 0.16 0.16
Matches are distributed among these distances:
54 14 0.16
55 7 0.08
56 17 0.19
57 29 0.32
58 7 0.08
59 16 0.18
ACGTcount: A:0.39, C:0.21, G:0.09, T:0.31
Consensus pattern (57 bp):
AGCAATTTAAATTATTAATTTCTCCTCATTCAACAGCAACAAACAGCAGCTATACTG
Found at i:32432065 original size:14 final size:14
Alignment explanation
Indices: 32432036--32432064 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
32432026 TTTGTTCTTG
32432036 TTCTTGTTCTTTTT
1 TTCTTGTTCTTTTT
32432050 TTCTT-TTCTTTTT
1 TTCTTGTTCTTTTT
32432063 TT
1 TT
32432065 TGTTTAATGA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 10 0.67
14 5 0.33
ACGTcount: A:0.00, C:0.14, G:0.03, T:0.83
Consensus pattern (14 bp):
TTCTTGTTCTTTTT
Found at i:32433591 original size:17 final size:17
Alignment explanation
Indices: 32433569--32433601 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
32433559 TATAACATAT
*
32433569 AATATAAATATATTTAC
1 AATATAAATAAATTTAC
32433586 AATATAAATAAATTTA
1 AATATAAATAAATTTA
32433602 TACGTTTTTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.58, C:0.03, G:0.00, T:0.39
Consensus pattern (17 bp):
AATATAAATAAATTTAC
Found at i:32439814 original size:17 final size:16
Alignment explanation
Indices: 32439776--32439813 Score: 76
Period size: 16 Copynumber: 2.4 Consensus size: 16
32439766 TAAAAAAGGG
32439776 CAAAAATGGGAATTTT
1 CAAAAATGGGAATTTT
32439792 CAAAAATGGGAATTTT
1 CAAAAATGGGAATTTT
32439808 CAAAAA
1 CAAAAA
32439814 AGGGCCCACA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.50, C:0.08, G:0.16, T:0.26
Consensus pattern (16 bp):
CAAAAATGGGAATTTT
Found at i:32445667 original size:42 final size:41
Alignment explanation
Indices: 32445551--32445672 Score: 120
Period size: 44 Copynumber: 2.8 Consensus size: 41
32445541 CATAGGATTC
** *
32445551 CGATATGAGTTATCGTGTAAGACCAC-GTCTGGGATGTTGGCAT
1 CGATATGA-TT-TCGTGTAAGACC-CTGTCTGGGACATCGGCAT
* * *
32445594 CGATTTGAAATTTACATGTAAGACCATGTCTGGGACATCGGCAT
1 CGATATG--ATTT-CGTGTAAGACCCTGTCTGGGACATCGGCAT
32445638 CGTATATGATTTCGTGTAAGACCCTGTCTGGGACA
1 CG-ATATGATTTCGTGTAAGACCCTGTCTGGGACA
32445673 GTGGCACTGA
Statistics
Matches: 65, Mismatches: 9, Indels: 11
0.76 0.11 0.13
Matches are distributed among these distances:
42 21 0.32
43 11 0.17
44 28 0.43
45 5 0.08
ACGTcount: A:0.25, C:0.18, G:0.26, T:0.30
Consensus pattern (41 bp):
CGATATGATTTCGTGTAAGACCCTGTCTGGGACATCGGCAT
Done.