genome.fa.s501.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1500
Parameters: 2 7 7 80 10 50 1000
Length:  67516

Tables:   1   

This is table  1  of  1  ( 51 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6344--6521	27	6.6	27	84	3	205	26	14	28	29	1.95
6344--6521	54	3.3	55	84	4	227	26	14	28	29	1.95
10466--10586	40	3.0	41	86	2	163	27	28	20	23	1.99
10884--11079	27	7.2	27	77	2	106	31	8	17	42	1.79
10921--11120	54	3.7	54	77	5	163	31	9	18	41	1.82
10963--11120	27	5.9	27	80	7	160	31	10	19	39	1.85
10963--11119	81	1.9	81	83	5	201	30	10	19	39	1.85
10911--11159	27	9.2	26	77	7	140	30	9	19	40	1.83
10884--11133	81	3.1	81	74	6	200	30	9	18	41	1.82
11188--11268	27	3.0	26	85	3	99	29	20	17	32	1.96
14742--15083	27	12.7	28	77	8	176	30	10	19	39	1.86
14771--15083	54	5.8	54	78	5	208	30	10	19	39	1.85
14849--15031	80	2.3	80	81	0	204	27	9	21	42	1.83
15107--15197	27	3.4	27	79	0	101	31	18	14	35	1.91
15100--15209	54	2.0	54	80	0	121	32	20	15	31	1.93
18986--19072	24	3.6	24	90	3	122	34	34	13	17	1.89
26854--26897	23	1.9	23	90	0	70	34	31	13	20	1.92
26862--26947	24	3.6	24	90	1	120	34	34	12	17	1.88
30221--30275	27	2.1	27	82	3	67	14	14	21	49	1.79
30535--30648	59	2.0	57	81	6	131	26	31	13	28	1.93
32595--32937	101	3.4	100	79	5	300	30	26	16	26	1.97
32543--32980	151	2.9	151	87	1	590	31	26	16	26	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32540--32980	50	8.7	50	77	5	370	31	26	16	26	1.97
34950--35002	25	2.1	25	100	0	106	52	16	7	22	1.69
35018--35047	15	1.9	16	93	6	53	60	30	0	10	1.30
36267--36443	43	4.1	42	77	13	164	29	28	18	23	1.97
37463--37565	51	2.0	51	100	0	206	33	15	35	15	1.89
37854--37960	27	4.0	27	80	9	119	34	19	19	26	1.96
37946--38113	27	6.2	27	81	4	185	41	20	8	29	1.81
37866--37990	54	2.3	53	79	5	126	37	20	15	27	1.92
37946--38113	54	3.1	53	86	4	219	41	20	8	29	1.81
38143--38215	27	2.7	27	86	0	92	28	21	26	23	1.99
38199--38250	27	2.0	26	84	3	68	26	21	19	32	1.97
38833--38967	73	1.9	67	82	8	162	20	25	21	31	1.98
38938--38996	26	2.3	26	85	5	75	22	22	20	35	1.96
43610--43716	27	4.0	27	86	0	142	32	19	20	27	1.97
43702--43854	27	5.6	27	85	0	180	39	20	9	30	1.85
43683--43822	54	2.6	54	82	2	138	38	19	12	30	1.88
43702--43907	27	7.6	27	77	7	112	38	20	8	31	1.83
44670--44728	26	2.3	26	85	5	75	22	22	20	35	1.96
47257--47413	43	3.7	44	74	12	130	26	16	24	31	1.96
52057--52176	56	2.1	56	100	0	240	44	9	24	22	1.82
52251--52275	10	2.5	10	100	0	50	72	0	28	0	0.86
53312--53496	40	4.6	39	82	6	203	24	22	28	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53312--53494	79	2.3	81	82	7	214	25	22	27	24	2.00
53365--53519	79	2.0	79	82	7	190	26	20	27	25	1.99
59933--60052	56	2.1	56	98	0	231	45	9	23	22	1.81
61146--61369	79	2.8	79	85	5	292	24	21	28	25	1.99
61146--61369	40	5.7	40	85	6	287	24	21	28	25	1.99
61185--61402	79	2.8	79	83	5	237	26	20	27	25	1.99
65267--65555	84	3.5	81	82	10	304	32	14	8	43	1.77

Tables:   1

The End!