genome.fa.s507.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold3029
Parameters: 2 7 7 80 10 50 1000
Length:  54681

Tables:   1   

This is table  1  of  1  ( 38 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
994--1074	41	2.0	41	85	7	112	29	18	18	33	1.95
2905--3263	47	7.7	47	95	1	611	32	8	30	28	1.87
4725--4827	43	2.4	43	100	0	206	22	15	35	26	1.94
4809--4882	29	2.6	29	89	4	105	25	16	32	25	1.96
5191--5413	40	5.6	40	85	4	245	25	22	26	26	2.00
8693--9199	47	10.7	47	94	1	845	32	9	30	28	1.88
9318--9432	37	3.1	36	91	3	176	22	17	33	26	1.96
13532--13655	29	4.3	29	75	8	117	25	14	21	37	1.92
13515--13655	58	2.4	58	75	5	151	26	14	21	36	1.93
16327--16731	46	8.6	46	74	13	255	27	18	29	24	1.98
16366--16631	94	2.9	92	78	10	274	27	18	30	23	1.98
16327--16730	140	2.9	140	79	8	367	27	18	29	24	1.98
17767--17805	21	1.9	21	89	5	62	10	33	30	25	1.89
20244--20447	54	3.8	54	81	4	216	38	21	9	30	1.85
20276--20445	80	2.1	81	83	3	209	38	21	9	30	1.85
20249--20445	27	7.3	26	76	6	155	38	21	9	29	1.86
20424--20742	27	11.8	27	86	2	408	29	24	6	39	1.81
20244--20474	107	2.1	108	80	3	250	37	22	9	31	1.85
20277--20796	27	19.3	27	80	5	264	34	23	7	35	1.84
20723--20806	27	3.1	27	77	16	84	42	25	7	25	1.80
20818--20869	27	1.9	27	88	7	79	40	13	11	34	1.81
21811--21868	25	2.3	26	82	14	77	24	27	18	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
21801--21881	25	3.3	24	79	8	74	27	23	22	27	1.99
22017--22108	42	2.2	42	90	0	139	30	14	21	33	1.93
24402--24534	27	4.9	27	76	8	117	39	18	9	33	1.82
24406--24554	54	2.7	54	79	7	149	39	18	8	33	1.81
27479--27738	46	5.6	48	75	9	197	28	18	28	24	1.98
27935--28003	33	2.1	33	100	0	138	30	14	18	36	1.91
31119--31169	27	2.0	26	92	7	86	21	33	11	33	1.90
32431--32548	43	2.8	42	79	2	128	28	22	16	33	1.95
37169--37273	55	1.9	55	82	3	131	23	31	24	20	1.98
49853--50381	93	5.6	92	87	7	629	28	28	8	34	1.87
49853--50381	46	11.1	48	87	6	676	28	28	8	34	1.87
51822--51941	56	2.1	56	95	0	213	22	22	10	45	1.82
53198--53549	40	8.9	40	90	3	514	26	27	21	25	1.99
53211--53588	40	9.5	40	89	3	478	26	27	21	25	1.99
53532--53706	79	2.2	79	80	11	198	25	28	21	24	1.99
53280--53708	40	10.8	40	85	7	207	26	27	20	24	1.99

Tables:   1

The End!