Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold1718
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 53951
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Found at i:1434 original size:1 final size:1
Alignment explanation
Indices: 1430--1469 Score: 62
Period size: 1 Copynumber: 40.0 Consensus size: 1
1420 TTTGTTCTAG
**
1430 TTTTTTTTTTTTTTTTCCTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
1470 AGGTCTTAAA
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
1 37 1.00
ACGTcount: A:0.00, C:0.05, G:0.00, T:0.95
Consensus pattern (1 bp):
T
Found at i:5841 original size:46 final size:46
Alignment explanation
Indices: 5711--5865 Score: 183
Period size: 46 Copynumber: 3.4 Consensus size: 46
5701 GTGAACTCGG
* * *
5711 AACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTC
1 AACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTC
* * * *
5757 AACTCAACGAGTTCGG--ATGC-CTAGTTACATTCA-CGAACTCGGACTC
1 AACTCAACGAGTTCGGACATTCGC-A--TCCA-TAAGTGAACTCGGACTC
5803 AACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTC
1 AACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTC
5849 AACTCAACGAGTTCGGA
1 AACTCAACGAGTTCGGA
5866 TGCTCAACCA
Statistics
Matches: 91, Mismatches: 10, Indels: 16
0.78 0.09 0.14
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 2 0.02
46 78 0.86
47 2 0.02
48 4 0.04
49 1 0.01
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.21
Consensus pattern (46 bp):
AACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTC
Found at i:6288 original size:30 final size:30
Alignment explanation
Indices: 6254--6313 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
6244 ATTTAATACG
6254 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
6284 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
6314 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:13273 original size:46 final size:45
Alignment explanation
Indices: 13220--13390 Score: 204
Period size: 46 Copynumber: 3.7 Consensus size: 45
13210 GTAACCCCCC
*
13220 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTT-GCATCCA
* *
13266 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT--T
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG--G-C--GTTGCATCCA
* * * *
13314 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTGCATCCA
13358 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG
13391 ATGCTCAACC
Statistics
Matches: 106, Mismatches: 11, Indels: 17
0.79 0.08 0.13
Matches are distributed among these distances:
42 5 0.05
44 3 0.03
45 28 0.26
46 32 0.30
47 28 0.26
48 3 0.03
49 1 0.01
50 3 0.03
51 3 0.03
ACGTcount: A:0.29, C:0.27, G:0.22, T:0.22
Consensus pattern (45 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTGCATCCA
Found at i:13383 original size:92 final size:93
Alignment explanation
Indices: 13225--13394 Score: 306
Period size: 92 Copynumber: 1.8 Consensus size: 93
13215 CCCCCTAAGT
* *
13225 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
13290 CGAGTTCGGATGCCTAGTTACATTTCAC
66 CGAGTTCGGATGCCTAGTTACATTTCAC
*
13318 GAACTCGGACTCAACTCAACGAGTTCGGACATT-GCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
13382 CGAGTTCGGATGC
66 CGAGTTCGGATGC
13395 TCAACCATCC
Statistics
Matches: 74, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
92 44 0.59
93 30 0.41
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATTTCAC
Found at i:13842 original size:30 final size:30
Alignment explanation
Indices: 13808--13867 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
13798 ATTTAATACG
13808 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
13838 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
13868 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:17200 original size:45 final size:46
Alignment explanation
Indices: 17139--17253 Score: 124
Period size: 46 Copynumber: 2.5 Consensus size: 46
17129 TGTGCCATGG
* *
17139 TGTCTTTCAATAATGGTCTTATTTATTCTCT-TCTTAATGCCATAA
1 TGTCTTTCAACAATGGTCTTATTTATTCTCTGTCGTAATGCCATAA
* * * * * ** *
17184 TGTCTTTCAACCATGGTTTTATTCATTTTTTGTCGTGTTGCCATAG
1 TGTCTTTCAACAATGGTCTTATTTATTCTCTGTCGTAATGCCATAA
*
17230 TGTCTTTCAACTATGGTCTTATTT
1 TGTCTTTCAACAATGGTCTTATTT
17254 CTTTGATTCA
Statistics
Matches: 56, Mismatches: 13, Indels: 1
0.80 0.19 0.01
Matches are distributed among these distances:
45 25 0.45
46 31 0.55
ACGTcount: A:0.19, C:0.17, G:0.13, T:0.50
Consensus pattern (46 bp):
TGTCTTTCAACAATGGTCTTATTTATTCTCTGTCGTAATGCCATAA
Found at i:17325 original size:45 final size:46
Alignment explanation
Indices: 17288--17389 Score: 147
Period size: 45 Copynumber: 2.3 Consensus size: 46
17278 CTTTCAGCTG
*
17288 TGGTCTTACTCTG-TAGAATCGTGATGCCATAACGTCTTTCA-ATCA
1 TGGTCTTACTC-GATAGAATCATGATGCCATAACGTCTTTCAGATCA
*
17333 TGGTCTTACTCGATAGAATCATGATGCCATAATGTCTTTCAG-TCA
1 TGGTCTTACTCGATAGAATCATGATGCCATAACGTCTTTCAGATCA
*
17378 TGGTTTTACTCG
1 TGGTCTTACTCG
17390 TTTCTGGTAT
Statistics
Matches: 52, Mismatches: 3, Indels: 4
0.88 0.05 0.07
Matches are distributed among these distances:
44 1 0.02
45 51 0.98
ACGTcount: A:0.24, C:0.21, G:0.19, T:0.37
Consensus pattern (46 bp):
TGGTCTTACTCGATAGAATCATGATGCCATAACGTCTTTCAGATCA
Found at i:17455 original size:46 final size:47
Alignment explanation
Indices: 17390--17483 Score: 138
Period size: 46 Copynumber: 2.0 Consensus size: 47
17380 GTTTTACTCG
* *
17390 TTTCTGGTATGGTGCCATAGTG-CTTTTCAACTATGGTCTTATTTATT
1 TTTCTGGTATAGTGCCATAGTGTC-TTTCAACTATGGTCTTAATTATT
*
17437 TTTC-GGTATAGTGTCATAGTGTCTTTCAACTATGGTCTTAATTATT
1 TTTCTGGTATAGTGCCATAGTGTCTTTCAACTATGGTCTTAATTATT
17483 T
1 T
17484 CTTTCAAGCC
Statistics
Matches: 43, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
46 38 0.88
47 5 0.12
ACGTcount: A:0.19, C:0.14, G:0.18, T:0.49
Consensus pattern (47 bp):
TTTCTGGTATAGTGCCATAGTGTCTTTCAACTATGGTCTTAATTATT
Found at i:19220 original size:40 final size:42
Alignment explanation
Indices: 19156--19248 Score: 120
Period size: 40 Copynumber: 2.3 Consensus size: 42
19146 CTATGTTTGT
** *
19156 CACTTAGTGTGCGTATCGAGATAGCTTCAGCTATATA-A-AG
1 CACTTAGTGTGCAAATCGAGATAGCTTCAGATATATATATAG
*
19196 CACTTAGTGTGCAAATC-AGAATAGCTTCGGATATATATATAG
1 CACTTAGTGTGCAAATCGAG-ATAGCTTCAGATATATATATAG
19238 CACTTAGTGTG
1 CACTTAGTGTG
19249 TGAGACTGTG
Statistics
Matches: 46, Mismatches: 4, Indels: 4
0.85 0.07 0.07
Matches are distributed among these distances:
39 2 0.04
40 30 0.65
41 1 0.02
42 13 0.28
ACGTcount: A:0.31, C:0.16, G:0.22, T:0.31
Consensus pattern (42 bp):
CACTTAGTGTGCAAATCGAGATAGCTTCAGATATATATATAG
Found at i:19290 original size:41 final size:41
Alignment explanation
Indices: 19237--19330 Score: 170
Period size: 41 Copynumber: 2.3 Consensus size: 41
19227 TATATATATA
*
19237 GCACTTAGTGTGTGAGACTGTGATAGCTTCGTCTATGAAAG
1 GCACTTAGTGTGTGAGACTGTGATAGCTTCGGCTATGAAAG
19278 GCACTTAGTGTGTGAGACTGTGATAGCTTCGGCTATGAAAG
1 GCACTTAGTGTGTGAGACTGTGATAGCTTCGGCTATGAAAG
*
19319 CCACTTAGTGTG
1 GCACTTAGTGTG
19331 CAAGATTACA
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
41 51 1.00
ACGTcount: A:0.23, C:0.16, G:0.30, T:0.31
Consensus pattern (41 bp):
GCACTTAGTGTGTGAGACTGTGATAGCTTCGGCTATGAAAG
Found at i:19345 original size:41 final size:40
Alignment explanation
Indices: 19176--19355 Score: 139
Period size: 41 Copynumber: 4.4 Consensus size: 40
19166 GCGTATCGAG
* * *
19176 ATAGCTTCAGCTATATAAAGCACTTAGTGTGCAA-A-TCAGA
1 ATAGCTTCGGCTAT-GAAAGCACTTAGTGTGCAAGACT-ATA
* * ** * *
19216 ATAGCTTCGGATATATATATAGCACTTAGTGTGTGAGACTGTG
1 ATAGCTTCGGCTAT-GA-A-AGCACTTAGTGTGCAAGACTATA
* ** * *
19259 ATAGCTTCGTCTATGAAAGGCACTTAGTGTGTGAGACTGTG
1 ATAGCTTCGGCTATGAAA-GCACTTAGTGTGCAAGACTATA
* *
19300 ATAGCTTCGGCTATGAAAGCCACTTAGTGTGCAAGATTACA
1 ATAGCTTCGGCTATGAAAG-CACTTAGTGTGCAAGACTATA
19341 ATAGCTTCGGCTATG
1 ATAGCTTCGGCTATG
19356 CTTTGGCACT
Statistics
Matches: 117, Mismatches: 17, Indels: 11
0.81 0.12 0.08
Matches are distributed among these distances:
40 17 0.15
41 71 0.61
42 15 0.13
43 13 0.11
44 1 0.01
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.31
Consensus pattern (40 bp):
ATAGCTTCGGCTATGAAAGCACTTAGTGTGCAAGACTATA
Found at i:29320 original size:49 final size:48
Alignment explanation
Indices: 29166--29335 Score: 157
Period size: 49 Copynumber: 3.5 Consensus size: 48
29156 AGATGCCGAC
* *
29166 GCCATGTCCCAGACATGGTCTTACACTGGCTAGCA-C-ATCAAAGTCGAT
1 GCCATGTCCCAGACA-GGTCTTACACTGGCTATCATCTATC-AGGTCGAT
* * * * * **
29214 GACATGTCCCAGATAGGTCTTACACTGACTTTCATATATCGAGACCGAT
1 GCCATGTCCCAGACAGGTCTTACACTGGCTATCATCTATC-AGGTCGAT
* * * *
29263 G-CAGTGTCCTAGATAGGTCTTACACTGGCTCTCATCTATCAGTGTCGAA
1 GCCA-TGTCCCAGACAGGTCTTACACTGGCTATCATCTATCAG-GTCGAT
29312 GCCATGTCCCAGACAGGTCTTACA
1 GCCATGTCCCAGACAGGTCTTACA
29336 ATGACACACA
Statistics
Matches: 98, Mismatches: 19, Indels: 9
0.78 0.15 0.07
Matches are distributed among these distances:
47 16 0.16
48 17 0.17
49 63 0.64
50 2 0.02
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.26
Consensus pattern (48 bp):
GCCATGTCCCAGACAGGTCTTACACTGGCTATCATCTATCAGGTCGAT
Found at i:29499 original size:46 final size:46
Alignment explanation
Indices: 29398--29506 Score: 125
Period size: 46 Copynumber: 2.4 Consensus size: 46
29388 TATATCTCAA
*
29398 GGCCGATGCATGTCCCAAACATGTCTTACACTAGCTCTCGTCTTAAT
1 GGCCGATGCATGTCCCAAACATGTCTTACACTAGCTCTC-TCATAAT
* ** *
29445 -GCCAATGCATGTCTGAGACATGTCTTACACTAGCTCT-T-ATAATGT
1 GGCCGATGCATGTCCCAAACATGTCTTACACTAGCTCTCTCATAA--T
29490 GGCCGATGCATGTCCCA
1 GGCCGATGCATGTCCCA
29507 GATGTAACAA
Statistics
Matches: 51, Mismatches: 8, Indels: 7
0.77 0.12 0.11
Matches are distributed among these distances:
43 3 0.06
44 1 0.02
45 1 0.02
46 46 0.90
ACGTcount: A:0.24, C:0.28, G:0.19, T:0.29
Consensus pattern (46 bp):
GGCCGATGCATGTCCCAAACATGTCTTACACTAGCTCTCTCATAAT
Found at i:37161 original size:104 final size:104
Alignment explanation
Indices: 36981--37245 Score: 424
Period size: 104 Copynumber: 2.5 Consensus size: 104
36971 GTATATAAAA
** * * *
36981 GGGTTGCTGTGTGCTGATTCCCCGATTTATGGGTGGTGCTATGTGCG-TGATCCACCATATCTTT
1 GGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGAT-ATCCACCATATCTTT
37045 GAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCGAG
65 GAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCGAG
* *
37085 GGGTTGCTAAGTGCTGATTCCCCGGTTCATTGGTGGTGCTAAGTGTGATATCCACCATATCTTTG
1 GGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCATATCTTTG
37150 AAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCGAG
66 AAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCGAG
* * *
37189 GGGTTGCTAAGTGATGATTCCCCGATTCAGTGGTGGTGCTAAGTGCGAGATCCACCA
1 GGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCA
37246 ATAACGGTTA
Statistics
Matches: 148, Mismatches: 12, Indels: 2
0.91 0.07 0.01
Matches are distributed among these distances:
104 147 0.99
105 1 0.01
ACGTcount: A:0.18, C:0.20, G:0.31, T:0.31
Consensus pattern (104 bp):
GGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCATATCTTTG
AAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCGAG
Found at i:44463 original size:27 final size:27
Alignment explanation
Indices: 44421--44472 Score: 95
Period size: 27 Copynumber: 1.9 Consensus size: 27
44411 GAAATGTGAA
*
44421 AGGGGTTGCTATGTGCTGATTCCCCCG
1 AGGGGTTGCTAAGTGCTGATTCCCCCG
44448 AGGGGTTGCTAAGTGCTGATTCCCC
1 AGGGGTTGCTAAGTGCTGATTCCCC
44473 GGTTCATTGG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.13, C:0.25, G:0.33, T:0.29
Consensus pattern (27 bp):
AGGGGTTGCTAAGTGCTGATTCCCCCG
Found at i:44485 original size:103 final size:103
Alignment explanation
Indices: 44345--44609 Score: 417
Period size: 103 Copynumber: 2.6 Consensus size: 103
44335 TGTATATAAA
** * * *
44345 AGGGGTTGCTGTGTGCTGATTCCCCGATTTATGGGTGGTGCTATGTGCGTGATCCACCATATCTT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGTGATCCACCATATCTT
44410 TGAAATGTGAAA-GGGGTTGCTATGTGCTGATTCCCCCG
66 TGAAATGTGAAAGGGGGTTGCTATGTGCTGATT-CCCCG
*
44448 AGGGGTTGCTAAGTGCTGATTCCCCGGTTCATTGGTGGTGCTAAGTGCGAT-ATCCACCATATCT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCG-TGATCCACCATATCT
44512 TTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCG
65 TTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCG
* * *
44551 AGGGGTTGCTAAGTGATGATTCCCCGATTCAGTGGTGGTGCTAAGTGCGAGATCCACCA
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGTGATCCACCA
44610 ATAACGGTTA
Statistics
Matches: 149, Mismatches: 10, Indels: 6
0.90 0.06 0.04
Matches are distributed among these distances:
103 128 0.86
104 21 0.14
ACGTcount: A:0.19, C:0.20, G:0.31, T:0.31
Consensus pattern (103 bp):
AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGTGATCCACCATATCTT
TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCG
Found at i:44561 original size:26 final size:26
Alignment explanation
Indices: 44526--44577 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
44516 AATGTGAAAG
* *
44526 GGGGTTGCTATGTGCTGATTCCCCGA
1 GGGGTTGCTAAGTGATGATTCCCCGA
44552 GGGGTTGCTAAGTGATGATTCCCCGA
1 GGGGTTGCTAAGTGATGATTCCCCGA
44578 TTCAGTGGTG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.15, C:0.21, G:0.35, T:0.29
Consensus pattern (26 bp):
GGGGTTGCTAAGTGATGATTCCCCGA
Found at i:51687 original size:102 final size:102
Alignment explanation
Indices: 51546--51807 Score: 340
Period size: 102 Copynumber: 2.6 Consensus size: 102
51536 GTATATAAAA
* * *
51546 GGGGTTGCT-GGTGCTGATTCCCCGATTTATGGTGGTGCTATGTGCGTGATCCACCATATCTTTG
1 GGGGTTGCTAAGTGCTGATTCCCCGATTCATGGTGGTGCTAAGTGCGTGATCCACCATATCTTTG
51610 -AAATGTG-A-AGGGGTTGCT-TGTGCTGATCCCCCGAGGG
66 AAAATGTGAACAGGGGTTGCTATGTGCTGATCCCCC----G
51647 GCGGGTTGCTAAGTGCTGATTCCCCGATTCAT-GTGGTGCTAAGTGCGAT-ATCCACCATATCTT
1 G-GGGTTGCTAAGTGCTGATTCCCCGATTCATGGTGGTGCTAAGTGCG-TGATCCACCATATCTT
*
51710 TGAAAAATGTGAACAGGGGTTGCTATGTGCTGATTCCCCG
64 TG-AAAATGTGAACAGGGGTTGCTATGTGCTGATCCCCCG
* * *
51750 GGGGTTGCTAAGTGATGATTCCCCGATTCAGTGGTGGTGCTAAGTGAGAGATCCACCA
1 GGGGTTGCTAAGTGCTGATTCCCCGATTCA-TGGTGGTGCTAAGTGCGTGATCCACCA
51808 ATAACGGTTA
Statistics
Matches: 143, Mismatches: 7, Indels: 19
0.85 0.04 0.11
Matches are distributed among these distances:
101 1 0.01
102 66 0.46
103 23 0.16
104 29 0.20
105 1 0.01
106 10 0.07
107 13 0.09
ACGTcount: A:0.19, C:0.20, G:0.31, T:0.30
Consensus pattern (102 bp):
GGGGTTGCTAAGTGCTGATTCCCCGATTCATGGTGGTGCTAAGTGCGTGATCCACCATATCTTTG
AAAATGTGAACAGGGGTTGCTATGTGCTGATCCCCCG
Found at i:51758 original size:25 final size:25
Alignment explanation
Indices: 51725--51774 Score: 82
Period size: 25 Copynumber: 2.0 Consensus size: 25
51715 AATGTGAACA
* *
51725 GGGGTTGCTATGTGCTGATTCCCCG
1 GGGGTTGCTAAGTGATGATTCCCCG
51750 GGGGTTGCTAAGTGATGATTCCCCG
1 GGGGTTGCTAAGTGATGATTCCCCG
51775 ATTCAGTGGT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.12, C:0.22, G:0.36, T:0.30
Consensus pattern (25 bp):
GGGGTTGCTAAGTGATGATTCCCCG
Done.