genome.fa.s511.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold3527
Parameters: 2 7 7 80 10 50 1000
Length:  52102

Tables:   1   

This is table  1  of  1  ( 35 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6970--7039	26	2.6	26	84	4	77	35	21	11	31	1.89
7146--7233	27	3.3	26	82	7	104	15	23	22	37	1.93
8321--8423	52	2.0	52	100	0	206	38	1	12	46	1.53
13157--13220	3	21.3	3	100	0	128	65	0	0	34	0.93
18381--18442	17	3.8	17	74	18	51	54	1	6	37	1.36
19223--19261	15	2.5	15	91	4	60	17	5	10	66	1.39
19222--19265	16	2.8	16	86	6	63	15	6	11	65	1.44
19490--19577	30	2.9	30	77	3	88	45	3	20	30	1.67
19738--20231	80	6.3	78	82	7	563	34	17	17	30	1.93
20230--20375	75	1.9	75	86	2	204	31	22	19	26	1.98
20055--20971	168	5.4	168	94	1	1527	34	19	17	28	1.95
20305--21064	93	8.8	93	72	16	648	35	18	17	28	1.94
20454--20878	75	5.2	74	63	27	191	33	19	18	28	1.95
20305--21574	428	3.0	418	78	11	1297	34	18	18	28	1.95
20055--20971	335	2.7	336	93	1	1527	34	19	17	28	1.95
20974--21008	13	2.6	14	81	9	54	60	0	14	25	1.35
20641--21480	261	3.3	258	83	6	1005	34	18	18	28	1.95
20898--21312	168	2.5	165	81	5	458	34	18	17	28	1.94
20018--21816	503	3.6	486	78	12	1540	34	18	17	29	1.94
21077--21250	90	1.9	90	83	2	224	35	17	17	29	1.93
21192--21947	77	9.7	75	76	12	564	33	17	17	31	1.94
20898--21332	169	2.6	164	81	6	471	35	18	17	28	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
21412--21947	74	7.1	74	83	7	569	33	17	16	32	1.93
21721--21940	72	3.0	73	90	2	352	35	17	16	31	1.92
29302--29351	24	2.1	24	88	7	75	44	12	22	22	1.85
32890--32947	16	3.7	16	93	4	100	12	6	17	63	1.49
32890--32943	15	3.5	15	97	2	99	12	5	16	64	1.45
33187--33259	31	2.4	30	76	2	74	42	5	20	31	1.75
40295--40325	12	2.5	13	89	10	55	35	16	0	48	1.46
40734--40758	13	1.9	13	100	0	50	48	8	0	44	1.32
44337--44397	28	2.2	28	90	0	95	32	26	9	31	1.89
44527--44595	27	2.5	27	90	2	111	13	23	26	37	1.91
45051--45162	56	2.0	56	98	0	215	23	2	10	63	1.39
45980--46013	12	2.8	12	86	0	50	29	14	50	5	1.67
49556--49611	27	2.0	28	96	3	105	25	17	21	35	1.95

Tables:   1

The End!