genome.fa.s516.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold292
Parameters: 2 7 7 80 10 50 1000
Length:  47970

Tables:   1   

This is table  1  of  1  ( 34 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5703--5745	21	2.0	21	86	8	61	55	2	25	16	1.53
9312--9350	21	1.9	20	89	5	60	33	0	20	46	1.51
10094--10159	6	10.8	6	75	15	64	48	15	18	18	1.81
10255--10384	27	4.8	27	89	3	154	36	20	23	20	1.95
10543--10607	22	3.0	22	73	13	62	33	21	23	21	1.97
11002--11322	136	2.4	134	83	4	430	26	20	17	35	1.94
10973--11322	81	4.3	81	87	1	488	26	20	18	35	1.95
10974--11322	27	12.9	27	84	4	420	26	20	17	35	1.95
11315--11545	27	8.6	27	76	5	191	32	9	20	38	1.85
11029--11360	81	4.1	81	83	4	233	28	18	16	35	1.93
11353--11545	53	3.6	53	82	6	178	30	10	20	38	1.87
12971--13143	27	6.4	27	83	4	188	37	19	18	24	1.94
12971--13144	54	3.2	54	81	3	215	37	19	18	24	1.94
13881--13940	27	2.3	27	85	2	77	21	23	20	35	1.96
20535--20706	27	6.4	27	82	4	213	35	20	20	23	1.96
20536--20687	80	1.9	80	88	0	232	36	21	19	23	1.95
23117--23274	40	4.0	40	83	3	210	23	21	26	28	1.99
23117--23274	80	2.0	80	89	2	246	23	21	26	28	1.99
26748--26817	25	2.8	25	91	0	113	28	21	22	27	1.99
26865--26913	21	2.3	21	89	0	80	34	20	10	34	1.86
26873--26915	11	4.0	11	75	6	52	30	20	13	34	1.92
27038--27500	27	17.2	27	79	3	414	25	15	18	39	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27459--27718	27	9.6	27	80	10	214	30	9	19	40	1.83
27460--27718	54	4.8	53	85	5	263	30	9	19	40	1.83
27456--27718	109	2.4	106	80	8	269	30	9	19	40	1.84
28912--29154	48	5.1	48	80	4	258	20	16	28	34	1.94
28910--29135	96	2.4	96	86	1	301	21	15	27	35	1.93
35123--35204	29	2.9	29	77	1	94	23	29	15	31	1.95
35427--35477	8	6.4	8	83	0	66	11	19	21	47	1.81
35427--35485	24	2.5	24	85	0	73	10	18	22	49	1.77
36158--36183	4	6.5	4	100	0	52	76	0	0	23	0.78
45057--45088	16	2.0	16	100	0	64	12	31	12	43	1.80
46168--46339	67	2.6	66	81	7	170	31	16	29	22	1.96
46192--46375	67	2.8	64	78	8	203	28	16	30	23	1.96

Tables:   1

The End!