genome.fa.s523.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1333
Parameters: 2 7 7 80 10 50 1000
Length:  44072

Tables:   1   

This is table  1  of  1  ( 30 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32--154	47	2.7	43	81	10	122	28	32	7	31	1.84
95--212	60	2.0	60	88	6	177	30	33	5	30	1.81
140--170	16	2.0	15	93	6	53	32	38	0	29	1.57
155--573	48	9.1	47	85	10	507	31	28	6	33	1.84
155--573	143	3.0	141	87	8	591	31	28	6	33	1.84
230--573	95	3.7	94	88	9	410	31	27	6	34	1.82
3967--4310	39	8.7	40	93	2	545	25	28	22	24	1.99
3967--4310	79	4.4	80	91	2	545	25	28	22	24	1.99
3954--4310	118	3.0	119	92	2	578	25	28	21	24	1.99
6531--7122	47	12.6	47	92	2	949	29	29	8	32	1.86
6531--7122	96	6.3	94	92	2	949	29	29	8	32	1.86
12501--12676	57	3.1	57	78	2	174	44	5	19	29	1.74
15958--16048	47	1.9	47	91	4	148	27	19	23	29	1.98
18580--18642	24	2.7	24	76	18	69	39	7	20	31	1.81
20121--20191	37	1.9	37	91	0	115	28	30	18	22	1.97
20337--20521	48	3.8	48	88	2	289	32	25	5	35	1.80
20337--20526	98	1.9	98	90	4	303	32	25	6	35	1.81
20491--20684	47	4.1	47	93	0	316	26	27	11	34	1.91
20559--20685	25	5.3	25	63	24	85	27	26	11	34	1.90
20517--20705	94	2.1	91	83	7	231	30	25	10	33	1.89
25188--25567	51	7.5	51	75	7	294	29	19	22	28	1.98
25133--25614	101	4.8	101	78	4	522	28	19	24	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25128--25674	151	3.6	150	84	5	708	27	19	24	28	1.98
25128--25616	202	2.4	201	80	3	586	28	18	24	28	1.98
25878--25907	16	1.9	15	93	6	51	43	0	23	33	1.54
32143--32492	50	7.0	50	83	2	357	26	18	26	29	1.98
32207--32386	51	3.5	51	91	2	256	27	22	22	27	1.99
32689--32718	16	1.9	15	93	6	51	43	0	23	33	1.54
38561--38625	26	2.5	25	80	7	85	20	26	18	35	1.95
38561--38672	27	4.2	26	74	17	88	21	25	17	34	1.95

Tables:   1

The End!