Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2254
Parameters: 2 7 7 80 10 50 1000
Length:  42973

Tables:   1   

This is table  1  of  1  ( 39 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4748--4808
29
2.0
31
93
6
108
22
42
21
13
1.87
6238--6430
84
2.3
83
75
12
205
26
27
18
27
1.98
8239--8268
15
2.1
15
93
6
53
36
26
6
30
1.82
9831--10017
67
2.7
69
84
8
256
24
22
24
28
1.99
9831--10027
23
8.7
23
81
6
197
24
21
24
29
1.99
11648--11735
29
3.1
28
75
6
88
34
20
3
42
1.69
12251--12318
10
5.5
12
72
20
52
75
0
23
1
0.89
12260--12318
9
5.9
10
75
16
52
76
0
22
1
0.88
12251--12319
22
3.0
22
81
8
68
75
0
23
1
0.89
12260--12325
20
3.2
20
76
21
66
77
0
19
3
0.90
12311--12344
13
2.6
13
90
0
50
82
0
5
11
0.83
12452--12506
24
2.3
24
90
9
94
63
10
25
0
1.27
13198--13263
18
3.8
18
76
6
55
36
13
12
37
1.82
13223--13449
17
12.2
18
71
17
85
35
11
9
43
1.75
13188--13253
35
1.9
34
87
6
98
39
15
12
33
1.84
13254--13301
25
2.0
25
84
8
64
33
6
6
54
1.51
13372--13433
20
3.1
20
88
6
90
41
12
8
37
1.73
13412--13449
18
2.2
17
90
4
58
36
13
10
39
1.79
25327--25386
19
3.0
21
83
13
74
36
8
13
41
1.74
25327--25369
21
2.2
20
91
8
70
30
9
11
48
1.71
25311--25532
17
12.2
17
70
17
83
42
9
12
35
1.75
25311--25533
18
12.2
18
69
18
97
42
9
12
35
1.75
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
25503--25569
34
1.9
34
87
3
98
32
11
14
40
1.83
25494--25558
17
3.8
17
72
11
60
36
12
13
36
1.83
25623--25668
17
2.6
19
75
25
55
41
10
17
30
1.84
26097--26133
16
2.4
16
86
13
51
2
10
0
86
0.67
26255--26309
24
2.3
24
90
9
94
0
25
10
63
1.27
26267--26310
21
2.1
21
86
0
61
0
22
9
68
1.18
26466--26514
12
4.2
12
82
12
57
0
22
0
77
0.77
26445--26505
10
5.9
10
78
16
54
1
21
0
77
0.86
26444--26514
22
3.0
22
80
13
72
1
22
0
76
0.87
27125--27160
15
2.4
16
90
9
58
25
0
2
72
0.98
28755--28953
23
8.7
23
83
4
224
29
25
21
24
1.99
28755--28953
69
2.9
69
84
4
267
29
25
21
24
1.99
30531--30560
15
2.1
15
93
6
53
30
6
26
36
1.82
32450--32598
43
3.5
43
69
14
119
30
18
26
25
1.98
34046--34113
30
2.3
30
97
0
127
16
23
38
22
1.93
39058--39279
23
9.7
23
82
5
252
30
24
20
24
1.99
39090--39279
46
4.1
46
91
1
301
29
25
21
23
1.99

Tables:   1

The End!