Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1196
Parameters: 2 7 7 80 10 50 1000
Length:  40149

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3308--3372
20
3.3
19
73
16
51
38
16
21
23
1.93
3522--3609
41
2.1
42
83
4
108
11
28
3
56
1.50
3590--3624
12
2.8
12
91
4
52
11
20
0
68
1.20
3586--3631
18
2.5
19
82
3
58
8
19
0
71
1.11
6240--6277
20
1.9
20
89
10
60
50
21
13
15
1.78
9310--9372
21
3.0
21
86
4
83
33
33
3
30
1.74
9330--9369
10
3.9
10
83
6
53
30
32
2
35
1.71
12519--12584
21
3.0
22
86
4
80
30
4
30
34
1.78
15681--15724
22
2.0
22
95
0
79
25
36
4
34
1.76
17639--17692
17
3.2
17
81
0
63
7
12
3
75
1.14
19871--19935
20
3.3
19
73
16
51
38
16
21
23
1.93
21699--21761
33
1.9
33
84
12
85
12
25
6
55
1.60
21758--21814
14
4.1
14
75
16
57
8
17
1
71
1.19
21836--21890
12
4.8
12
76
13
53
9
18
1
70
1.22
21776--21865
6
14.7
6
68
6
56
6
17
3
72
1.21
22920--22946
12
2.2
12
100
0
54
14
0
7
77
0.97
22908--22946
11
3.5
11
82
6
51
15
5
5
74
1.17
26480--26545
21
3.0
22
86
4
80
30
4
30
34
1.78
30029--30125
30
3.2
30
72
8
99
28
16
26
27
1.97
32277--32307
12
2.6
12
100
0
62
25
16
12
45
1.83
32368--32417
6
8.2
6
81
16
50
2
20
2
76
0.99
32357--32427
37
1.9
37
86
11
101
2
18
2
76
1.04
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
32353--32413
16
3.8
16
77
14
63
3
19
1
75
1.03
33330--33366
10
3.9
10
79
13
51
8
8
0
83
0.80
33331--33367
18
2.1
17
95
5
65
5
8
0
86
0.70
33347--33386
12
3.2
12
89
3
53
12
5
5
77
1.09
35094--35190
30
3.2
30
72
8
99
28
16
26
27
1.97

Tables:   1

The End!