Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold5
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 400853
ACGTcount: A:0.33, C:0.17, G:0.18, T:0.32
File 1 of 2
Found at i:1998 original size:50 final size:50
Alignment explanation
Indices: 1879--2308 Score: 332
Period size: 50 Copynumber: 8.6 Consensus size: 50
1869 GTTGTGAGAA
* * * *** *
1879 CACATGTGTAATACTATGTGCAGGCTACTATGTGTTTAAGACCGTT-TTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGA---TTGTTATGT
* *
1931 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTATGA
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTATGT
* * * * * *
1981 CGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGATAGTTTTGAT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTATG-T
* * * * * * *
2032 CCCGTGTGTAGTACTAAGTGTAGGCTACTATGTGTATCAGATGGTTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTATGT
* * * * *
2082 CACGTGTGTAGTACTAAGTGCACGCTACTACGTGTACCGGATTGATAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTATGT
* * * ** * ** *
2132 CGCATGTGTAGTACTAAGTGCGGGCT--T-TGCCTACC-GCTAACTTCA-AT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGAT-TGTT-ATGT
* * * * * * *
2179 CACGTGTGTAGTACTAAGTGCAAGCTACTACGAGTATCAGATGGATAAGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTATGT
* * * *
2229 CACATGTGTAGTACTAAGTGCAGACTACTACATGTACCAGATTGATACGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTATGT
*
2279 CACATGTGTAGTACTAAGTGCAAGCTACTA
1 CACATGTGTAGTACTAAGTGCAGGCTACTA
2309 TTCGTACCAG
Statistics
Matches: 300, Mismatches: 69, Indels: 20
0.77 0.18 0.05
Matches are distributed among these distances:
46 2 0.01
47 29 0.10
48 2 0.01
49 4 0.01
50 187 0.62
51 42 0.14
52 34 0.11
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (50 bp):
CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTATGT
Found at i:2119 original size:101 final size:101
Alignment explanation
Indices: 1933--2308 Score: 282
Period size: 101 Copynumber: 3.8 Consensus size: 101
1923 TTTTAGGTCA
* * *
1933 CGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTATGACGCATGTGTAGTACTAA
1 CGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGGTTAGGACACATGTGTAGTACTAA
* *
1998 GTGCAGGCTACTATGCGTACCCGATAGTTTTGATCC
66 GTGCACGCTACTACGCGTACCCGATAGTTTTGATCC
* * * * *
2034 CGTGTGTAGTACTAAGTGTAGGCTACTATGTGTATCAGATGGTTAGGTCACGTGTGTAGTACTAA
1 CGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGGTTAGGACACATGTGTAGTACTAA
* * * * * * *
2099 GTGCACGCTACTACGTGTACCGGATTG-ATAGGTCG
66 GTGCACGCTACTACGCGTACCCGATAGTTTTGATCC
* * * ** * ** *
2134 CATGTGTAGTACTAAGTGCGGGCT--T-TGCCTACC-GCTAACTTCA--ATCACGTGTGTAGTAC
1 CGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGAT-GGTT-AGGA-CACATGTGTAGTAC
* * * * * * ** *
2193 TAAGTGCAAGCTACTACGAGTATCAGATGGATAAG-TCA
63 TAAGTGCACGCTACTACGCGTACCCGATAGTTTTGATCC
* * * * * * *
2231 CATGTGTAGTACTAAGTGCAGACTACTACATGTACCAGATTGATACGTCACATGTGTAGTACTAA
1 CGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGGTTAGGACACATGTGTAGTACTAA
*
2296 GTGCAAGCTACTA
66 GTGCACGCTACTA
2309 TTCGTACCAG
Statistics
Matches: 218, Mismatches: 47, Indels: 21
0.76 0.16 0.07
Matches are distributed among these distances:
96 2 0.01
97 70 0.32
98 4 0.02
99 2 0.01
100 59 0.27
101 81 0.37
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (101 bp):
CGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGGTTAGGACACATGTGTAGTACTAA
GTGCACGCTACTACGCGTACCCGATAGTTTTGATCC
Found at i:2257 original size:147 final size:149
Alignment explanation
Indices: 1929--2305 Score: 490
Period size: 147 Copynumber: 2.5 Consensus size: 149
1919 ACCGTTTTAG
* * *
1929 GTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTATGACGCATGTGTAGTA
1 GTCACGTGTGTAGTACTAAGTGCA-GCTACTACGTGTACCAGATTGATACGTCGCATGTGTAGTA
* ** ** * * *
1994 CTAAGTGCAGGCTACTATGCGTACCCGATAGTTTTGATCCCGTGTGTAGTACTAAGTGTAGGCTA
65 CTAAGTGCAGGCTA-TATGCCTACCCGATAACTTCAATCACGTGTGTAGTACTAAGTGCAAGCTA
* * * *
2059 CTATGTGTATCAGATGGTTAG
129 CTACGAGTATCAGATGGATAA
* *
2080 GTCACGTGTGTAGTACTAAGTGCACGCTACTACGTGTACCGGATTGATAGGTCGCATGTGTAGTA
1 GTCACGTGTGTAGTACTAAGTGCA-GCTACTACGTGTACCAGATTGATACGTCGCATGTGTAGTA
* *
2145 CTAAGTGCGGGCT-T-TGCCTA-CCGCTAACTTCAATCACGTGTGTAGTACTAAGTGCAAGCTAC
65 CTAAGTGCAGGCTATATGCCTACCCGATAACTTCAATCACGTGTGTAGTACTAAGTGCAAGCTAC
2207 TACGAGTATCAGATGGATAA
130 TACGAGTATCAGATGGATAA
* * *
2227 GTCACATGTGTAGTACTAAGTGCAGACTACTACATGTACCAGATTGATACGTCACATGTGTAGTA
1 GTCACGTGTGTAGTACTAAGTGCAG-CTACTACGTGTACCAGATTGATACGTCGCATGTGTAGTA
*
2292 CTAAGTGCAAGCTA
65 CTAAGTGCAGGCTA
2306 CTATTCGTAC
Statistics
Matches: 198, Mismatches: 26, Indels: 7
0.86 0.11 0.03
Matches are distributed among these distances:
146 1 0.01
147 119 0.60
148 5 0.03
149 1 0.01
151 72 0.36
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.29
Consensus pattern (149 bp):
GTCACGTGTGTAGTACTAAGTGCAGCTACTACGTGTACCAGATTGATACGTCGCATGTGTAGTAC
TAAGTGCAGGCTATATGCCTACCCGATAACTTCAATCACGTGTGTAGTACTAAGTGCAAGCTACT
ACGAGTATCAGATGGATAA
Found at i:2540 original size:16 final size:16
Alignment explanation
Indices: 2519--2550 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
2509 AGAATGGAGT
2519 AAGTGAAATTATGTAA
1 AAGTGAAATTATGTAA
*
2535 AAGTGAAATTTTGTAA
1 AAGTGAAATTATGTAA
2551 TAAAACAATT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.47, C:0.00, G:0.19, T:0.34
Consensus pattern (16 bp):
AAGTGAAATTATGTAA
Found at i:5797 original size:15 final size:14
Alignment explanation
Indices: 5777--5836 Score: 66
Period size: 15 Copynumber: 4.1 Consensus size: 14
5767 TATGATATTA
5777 TATCTTGGATTTTCT
1 TATCTTGGA-TTTCT
5792 TATCTTGGATTTCT
1 TATCTTGGATTTCT
* *
5806 CTATCTTAGACTTCT
1 -TATCTTGGATTTCT
*
5821 TAATCTTGGTTTTCT
1 T-ATCTTGGATTTCT
5836 T
1 T
5837 GTTATCTATA
Statistics
Matches: 38, Mismatches: 5, Indels: 4
0.81 0.11 0.09
Matches are distributed among these distances:
14 6 0.16
15 32 0.84
ACGTcount: A:0.15, C:0.17, G:0.12, T:0.57
Consensus pattern (14 bp):
TATCTTGGATTTCT
Found at i:8923 original size:50 final size:50
Alignment explanation
Indices: 8797--9190 Score: 337
Period size: 50 Copynumber: 7.8 Consensus size: 50
8787 TTGTAAGAAT
* *
8797 ACATGTGTAGTACTATGTGCAGGCTACTATGTGTTTAAGACAG-TT-TTAGGTC
1 ACATGTGTAGTACTAAGTGCAGGCTACTATGTG--T-A-CCAGATTGTTAGGTC
* * * * * *
8849 ACGTGTGCAGTACTGAGTGCAGGCTACTACGTGTACCAAATTGTTAGGCC
1 ACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTGTTAGGTC
* * * * * *
8899 GCATGTGTAGTACTAAGTGTAGGCTACTATGCGTACCCA-ATAGTTTTGATC
1 ACATGTGTAGTACTAAGTGCAGGCTACTATGTGTA-CCAGATTG-TTAGGTC
* ** ** * *
8950 ACGTGTGTAGTACTAAGTTTAGGCTACTACCTGTATCAGATGGTTAGGTC
1 ACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTGTTAGGTC
* * * *
9000 ACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATTGATAGGTC
1 ACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTGTTAGGTC
* * * * * * *
9050 GCATGTGTAGTACTAAGTGTAGGCTACTATGCGTACTC-GTTTACTTCGATC
1 ACATGTGTAGTACTAAGTGCAGGCTACTATGTGTAC-CAGATT-GTTAGGTC
** * *
9101 ATGTGTGTAGTACTAAGTGCGGGCTACTATGTGTACCAGATTGATAGGTC
1 ACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTGTTAGGTC
* * *
9151 GCATGTGTAATACTAAGTGCAGGCTACTATGCGTACCAGA
1 ACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGA
9191 GAGCTTCGGT
Statistics
Matches: 271, Mismatches: 63, Indels: 18
0.77 0.18 0.05
Matches are distributed among these distances:
48 2 0.01
49 3 0.01
50 161 0.59
51 77 0.28
52 28 0.10
ACGTcount: A:0.25, C:0.18, G:0.26, T:0.31
Consensus pattern (50 bp):
ACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTGTTAGGTC
Found at i:9036 original size:101 final size:103
Alignment explanation
Indices: 8797--9036 Score: 279
Period size: 101 Copynumber: 2.4 Consensus size: 103
8787 TTGTAAGAAT
* ** *
8797 ACATGTGTAGTACTATGTGCAGGCTACTATGTGT-TTAAGACAGTTTTAGGTCACGTGTGCAGTA
1 ACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAAGACAGTTTTAGATCACGTGTGCAGTA
* * *
8861 CTGAGTGCAGGCTACTACGTGTACCAAATTGTTAGGCC
66 CTAAGTGCAGGCTACTACCTGTACCAAATGGTTAGGCC
* * * * * *
8899 GCATGTGTAGTACTAAGTGTAGGCTACTATGCGTACCCA-ATAGTTTT-GATCACGTGTGTAGTA
1 ACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAAGACAGTTTTAGATCACGTGTGCAGTA
** * * *
8962 CTAAGTTTAGGCTACTACCTGTATCAGATGGTTAGGTC
66 CTAAGTGCAGGCTACTACCTGTACCAAATGGTTAGGCC
* *
9000 ACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACC
1 ACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACC
9037 GGATTGATAG
Statistics
Matches: 114, Mismatches: 23, Indels: 3
0.81 0.16 0.02
Matches are distributed among these distances:
101 76 0.67
102 37 0.32
103 1 0.01
ACGTcount: A:0.25, C:0.18, G:0.26, T:0.32
Consensus pattern (103 bp):
ACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAAGACAGTTTTAGATCACGTGTGCAGTA
CTAAGTGCAGGCTACTACCTGTACCAAATGGTTAGGCC
Found at i:9107 original size:101 final size:101
Alignment explanation
Indices: 9002--9186 Score: 325
Period size: 101 Copynumber: 1.8 Consensus size: 101
8992 GTTAGGTCAC
* *
9002 GTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATTGATAGGTCGCATGTGTAGTACTAAG
1 GTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGTAATACTAAG
*
9067 TGTAGGCTACTATGCGTACTCGTTTACTTCGATCAT
66 TGCAGGCTACTATGCGTACTCGTTTACTTCGATCAT
* *
9103 GTGTGTAGTACTAAGTGCGGGCTACTATGTGTACCAGATTGATAGGTCGCATGTGTAATACTAAG
1 GTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGTAATACTAAG
9168 TGCAGGCTACTATGCGTAC
66 TGCAGGCTACTATGCGTAC
9187 CAGAGAGCTT
Statistics
Matches: 79, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
101 79 1.00
ACGTcount: A:0.24, C:0.17, G:0.28, T:0.31
Consensus pattern (101 bp):
GTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGTAATACTAAG
TGCAGGCTACTATGCGTACTCGTTTACTTCGATCAT
Found at i:9116 original size:151 final size:151
Alignment explanation
Indices: 8842--9188 Score: 453
Period size: 151 Copynumber: 2.3 Consensus size: 151
8832 TAAGACAGTT
* * *
8842 TTAGGTCACGTGTGCAGTACTGAGTGCAGGCTACTACGTGTACCAAATTGTTAGGCCGCATGTGT
1 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAAATTGATAGGCCGCATGTGT
* * **
8907 AGTACTAAGTGTAGGCTACTATGCGTACCCAATAGTTTTGATCACGTGTGTAGTACTAAGTTTAG
66 AGTACTAAGTGTAGGCTACTATGCGTACCCAATAGCTTCGATCACGTGTGTAGTACTAAGTGCAG
*
8972 GCTACTACCTGTATCAGATGG
131 GCTACTACCTGTACCAGATGG
** *
8993 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATTGATAGGTCGCATGTGT
1 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAAATTGATAGGCCGCATGTGT
*** * *
9058 AGTACTAAGTGTAGGCTACTATGCGTACTCGTTTA-CTTCGATCATGTGTGTAGTACTAAGTGCG
66 AGTACTAAGTGTAGGCTACTATGCGTAC-CCAATAGCTTCGATCACGTGTGTAGTACTAAGTGCA
** *
9122 GGCTACTATGTGTACCAGATTG
130 GGCTACTACCTGTACCAGATGG
* * * * * *
9144 ATAGGTCGCATGTGTAATACTAAGTGCAGGCTACTATGCGTACCA
1 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCA
9189 GAGAGCTTCG
Statistics
Matches: 169, Mismatches: 26, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
151 166 0.98
152 3 0.02
ACGTcount: A:0.24, C:0.18, G:0.27, T:0.31
Consensus pattern (151 bp):
TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAAATTGATAGGCCGCATGTGT
AGTACTAAGTGTAGGCTACTATGCGTACCCAATAGCTTCGATCACGTGTGTAGTACTAAGTGCAG
GCTACTACCTGTACCAGATGG
Found at i:10051 original size:180 final size:180
Alignment explanation
Indices: 9749--10105 Score: 558
Period size: 180 Copynumber: 2.0 Consensus size: 180
9739 TTCAAGAGCT
* * * * * *
9749 GTACCATGAGATAAATAATTTTTAGTGAAGAGAGGTCGGATCTGTTGGATAGTGAAAAATGGGTA
1 GTACCATGAAATAAATAATTTTTAGTGAAGAGAGGTCGGAACTATTGGAGACTGAAAAAGGGGTA
* * *
9814 TTTTTAATGAATAAACTGTACTAATTGGCTAAACTAAAAATTTTGAAAATTTTATGGTACGAATA
66 TTTTTAATGAATAAACTGTACTAATTGGCTAAACCAAAAATTCTGAAAATTTTATGGTAAGAATA
* * *
9879 TATGTTAGTCTAGTTTC-TAGGAAAATTAGT-GATTCTTAATTTGGAGTCCC
131 TATATGAGTCTAGTTTCATA-GAAAATTAATGGA-TCTTAATTTGGAGTCCC
9929 GTACCATGAAATAAATAATTTTTAGTGAAGAGAGGTCGGAACTATTGGAGACT-AAAATAGGGGT
1 GTACCATGAAATAAATAATTTTTAGTGAAGAGAGGTCGGAACTATTGGAGACTGAAAA-AGGGGT
9993 ATTTTTAATGAATAAACTGTACTAATTGGCTAAACCAAAAATTCTGAAAATTTTATGGTAAGAAT
65 ATTTTTAATGAATAAACTGTACTAATTGGCTAAACCAAAAATTCTGAAAATTTTATGGTAAGAAT
10058 ATATATGAGTCTAGTTTCATAGAAAATTAATGGATCTTAATTTGGAGT
130 ATATATGAGTCTAGTTTCATAGAAAATTAATGGATCTTAATTTGGAGT
10106 TTCATAACTT
Statistics
Matches: 162, Mismatches: 12, Indels: 6
0.90 0.07 0.03
Matches are distributed among these distances:
179 4 0.02
180 154 0.95
181 4 0.02
ACGTcount: A:0.37, C:0.08, G:0.20, T:0.35
Consensus pattern (180 bp):
GTACCATGAAATAAATAATTTTTAGTGAAGAGAGGTCGGAACTATTGGAGACTGAAAAAGGGGTA
TTTTTAATGAATAAACTGTACTAATTGGCTAAACCAAAAATTCTGAAAATTTTATGGTAAGAATA
TATATGAGTCTAGTTTCATAGAAAATTAATGGATCTTAATTTGGAGTCCC
Found at i:11822 original size:6 final size:6
Alignment explanation
Indices: 11792--11910 Score: 75
Period size: 6 Copynumber: 19.3 Consensus size: 6
11782 AAGAAACATT
* * * *
11792 ATCAGA A-CTAGA ATCAAA ATGAGA ATCAGA ATCAG- GTGACAGA ATCAAA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA AT--CAGA ATCAGA
* * * *
11841 ATCAAA ATCAGA ATCAGA ATTAGGTA A-CAGA ATCAGA ATTAGT ATCAGGTA
1 ATCAGA ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA ATCA-G-A
11892 A-CAGA ATCAGA ATCAGA AT
1 ATCAGA ATCAGA ATCAGA AT
11911 GTGAATGCAA
Statistics
Matches: 88, Mismatches: 14, Indels: 22
0.71 0.11 0.18
Matches are distributed among these distances:
5 6 0.07
6 69 0.78
7 9 0.10
8 4 0.05
ACGTcount: A:0.50, C:0.13, G:0.18, T:0.19
Consensus pattern (6 bp):
ATCAGA
Found at i:11837 original size:19 final size:19
Alignment explanation
Indices: 11813--11907 Score: 77
Period size: 19 Copynumber: 4.7 Consensus size: 19
11803 AATCAAAATG
*
11813 AGAATCAGAATCAGGTGAC
1 AGAATCAGAATCAGGTAAC
* *
11832 AGAATCAAAATCA--AAATC
1 AGAATCAGAATCAGGTAA-C
*
11850 AGAATCAGAATTAGGTAAC
1 AGAATCAGAATCAGGTAAC
11869 AGAATCAGAATTAGTATCAGGTAAC
1 AGAATCAG----A--ATCAGGTAAC
11894 AGAATCAGAATCAG
1 AGAATCAGAATCAG
11908 AATGTGAATG
Statistics
Matches: 60, Mismatches: 7, Indels: 18
0.71 0.08 0.21
Matches are distributed among these distances:
17 1 0.02
18 12 0.20
19 26 0.43
20 2 0.03
21 1 0.02
23 1 0.02
25 17 0.28
ACGTcount: A:0.48, C:0.14, G:0.19, T:0.19
Consensus pattern (19 bp):
AGAATCAGAATCAGGTAAC
Found at i:11874 original size:25 final size:25
Alignment explanation
Indices: 11846--11910 Score: 103
Period size: 25 Copynumber: 2.6 Consensus size: 25
11836 TCAAAATCAA
*
11846 AATCAGAATCAGAATTAGGTAACAG
1 AATCAGAATCAGAATCAGGTAACAG
* *
11871 AATCAGAATTAGTATCAGGTAACAG
1 AATCAGAATCAGAATCAGGTAACAG
11896 AATCAGAATCAGAAT
1 AATCAGAATCAGAAT
11911 GTGAATGCAA
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 35 1.00
ACGTcount: A:0.48, C:0.12, G:0.18, T:0.22
Consensus pattern (25 bp):
AATCAGAATCAGAATCAGGTAACAG
Found at i:11875 original size:31 final size:31
Alignment explanation
Indices: 11801--11910 Score: 100
Period size: 31 Copynumber: 3.5 Consensus size: 31
11791 TATCAGAACT
* *
11801 AGAATCAAAATGAGAATCAGAATCAGGTGAC
1 AGAATCAAAATCAGAATCAGAATCAGGTAAC
* *
11832 AGAATCAAAATCAAAATCAGAATCA-G-AATT
1 AGAATCAAAATCAGAATCAGAATCAGGTAA-C
* * *
11862 AGGTAA-CAGAATCAGAATTAGTATCAGGTAAC
1 A-G-AATCAAAATCAGAATCAGAATCAGGTAAC
*
11894 AGAATCAGAATCAGAAT
1 AGAATCAAAATCAGAAT
11911 GTGAATGCAA
Statistics
Matches: 64, Mismatches: 9, Indels: 12
0.75 0.11 0.14
Matches are distributed among these distances:
29 1 0.02
30 4 0.06
31 53 0.83
32 4 0.06
33 2 0.03
ACGTcount: A:0.50, C:0.13, G:0.18, T:0.19
Consensus pattern (31 bp):
AGAATCAAAATCAGAATCAGAATCAGGTAAC
Found at i:11888 original size:37 final size:37
Alignment explanation
Indices: 11803--11875 Score: 119
Period size: 37 Copynumber: 2.0 Consensus size: 37
11793 TCAGAACTAG
* *
11803 AATCAAAATGAGAATCAGAATCAGGTGACAGAATCAA
1 AATCAAAATCAGAATCAGAATCAGGTAACAGAATCAA
*
11840 AATCAAAATCAGAATCAGAATTAGGTAACAGAATCA
1 AATCAAAATCAGAATCAGAATCAGGTAACAGAATCA
11876 GAATTAGTAT
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 33 1.00
ACGTcount: A:0.52, C:0.14, G:0.16, T:0.18
Consensus pattern (37 bp):
AATCAAAATCAGAATCAGAATCAGGTAACAGAATCAA
Found at i:12077 original size:27 final size:26
Alignment explanation
Indices: 12029--12088 Score: 75
Period size: 27 Copynumber: 2.3 Consensus size: 26
12019 GCGAGGCTGC
*
12029 CAGATATTGTGACGAAGTCACCAGATA
1 CAGATATTGTGACGAAGCCACCAGA-A
* * *
12056 CAGATATTGTGGCTAGGCCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
12082 CAGATAT
1 CAGATAT
12089 ATATATGTGG
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.35, C:0.20, G:0.23, T:0.22
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:12444 original size:27 final size:27
Alignment explanation
Indices: 12414--12472 Score: 64
Period size: 27 Copynumber: 2.2 Consensus size: 27
12404 AACACCCTAG
*
12414 GGGTAAAATGGTAATTTTACCCCACAA
1 GGGTAAAATGGTAATTCTACCCCACAA
*** * *
12441 GGGTATCTTGGTAATTCTACCCTACAG
1 GGGTAAAATGGTAATTCTACCCCACAA
12468 GGGTA
1 GGGTA
12473 TTTCGGTATT
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.29, C:0.19, G:0.24, T:0.29
Consensus pattern (27 bp):
GGGTAAAATGGTAATTCTACCCCACAA
Found at i:12473 original size:27 final size:27
Alignment explanation
Indices: 12427--12665 Score: 302
Period size: 27 Copynumber: 8.9 Consensus size: 27
12417 TAAAATGGTA
*
12427 ATTT-TACCCCACAAGGGTATCTT-GGT
1 ATTTCTACCCTACAAGGGTAT-TTCGGT
* *
12453 AATTCTACCCTACAGGGGTATTTCGGT
1 ATTTCTACCCTACAAGGGTATTTCGGT
*
12480 ATTTCTACCTTACAAGGGTATTTCGGT
1 ATTTCTACCCTACAAGGGTATTTCGGT
* * * **
12507 AATTCTACCCTATAGGGGTATTTTAGT
1 ATTTCTACCCTACAAGGGTATTTCGGT
* *
12534 AATTCTACCCTACAGGGGTATTTCGGT
1 ATTTCTACCCTACAAGGGTATTTCGGT
* *
12561 ATTTCTACCCTACAGGGGTATTTTGGT
1 ATTTCTACCCTACAAGGGTATTTCGGT
*
12588 ATTTCTACCCTATAAGGGTATTTCGGT
1 ATTTCTACCCTACAAGGGTATTTCGGT
* * *
12615 ATTTCTACCCTATAAAGGTATTTCGAT
1 ATTTCTACCCTACAAGGGTATTTCGGT
12642 ATTTCTACCCTACAAGGGTATTTC
1 ATTTCTACCCTACAAGGGTATTTC
12666 AGTAATTTTG
Statistics
Matches: 187, Mismatches: 24, Indels: 3
0.87 0.11 0.01
Matches are distributed among these distances:
26 5 0.03
27 182 0.97
ACGTcount: A:0.23, C:0.20, G:0.18, T:0.38
Consensus pattern (27 bp):
ATTTCTACCCTACAAGGGTATTTCGGT
Found at i:12549 original size:81 final size:81
Alignment explanation
Indices: 12423--12672 Score: 347
Period size: 81 Copynumber: 3.1 Consensus size: 81
12413 GGGGTAAAAT
* * * *
12423 GGTAATTTTACCCCACAAGGGTATCTTGGTAATTCTACCCTACAGGGGTATTTCGGTATTTCTAC
1 GGTAATTCTACCCTATAAGGGTATTTTGGTAATTCTACCCTACAGGGGTATTTCGGTATTTCTAC
*
12488 CTTACAAGGGTATTTC
66 CCTACAAGGGTATTTC
* *
12504 GGTAATTCTACCCTATAGGGGTATTTTAGTAATTCTACCCTACAGGGGTATTTCGGTATTTCTAC
1 GGTAATTCTACCCTATAAGGGTATTTTGGTAATTCTACCCTACAGGGGTATTTCGGTATTTCTAC
* *
12569 CCTACAGGGGTATTTT
66 CCTACAAGGGTATTTC
* * * * ** *
12585 GGTATTTCTACCCTATAAGGGTATTTCGGTATTTCTACCCTATAAAGGTATTTCGATATTTCTAC
1 GGTAATTCTACCCTATAAGGGTATTTTGGTAATTCTACCCTACAGGGGTATTTCGGTATTTCTAC
12650 CCTACAAGGGTATTTC
66 CCTACAAGGGTATTTC
*
12666 AGTAATT
1 GGTAATT
12673 TTGTAAATCG
Statistics
Matches: 147, Mismatches: 22, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
81 147 1.00
ACGTcount: A:0.24, C:0.19, G:0.19, T:0.38
Consensus pattern (81 bp):
GGTAATTCTACCCTATAAGGGTATTTTGGTAATTCTACCCTACAGGGGTATTTCGGTATTTCTAC
CCTACAAGGGTATTTC
Found at i:12769 original size:81 final size:81
Alignment explanation
Indices: 12656--12813 Score: 176
Period size: 81 Copynumber: 2.0 Consensus size: 81
12646 CTACCCTACA
* *** *
12656 AGGGTATTTCAGTAATTTTGTAAATCGAGGGTAAAACGGTAATTCTATAAA-TCAGTGGTACTTT
1 AGGGTATTTCAATAATTTCACAAATCGAGGGTAAAACGGTAATTCTATAAACT-AGGGGTACTTT
*
12720 GGTAATTTTACAAGTCG
65 GATAATTTTACAAGTCG
**** * *
12737 AGGGTATTTCAATAATTTCACAAATC-AGGGGTATTTTGGTAATTTTATAAACTAGGGGTATTTT
1 AGGGTATTTCAATAATTTCACAAATCGA-GGGTAAAACGGTAATTCTATAAACTAGGGGTACTTT
12801 GATAATTTTACAA
65 GATAATTTTACAA
12814 ACCAGGGGTA
Statistics
Matches: 63, Mismatches: 12, Indels: 4
0.80 0.15 0.05
Matches are distributed among these distances:
80 1 0.02
81 61 0.97
82 1 0.02
ACGTcount: A:0.33, C:0.09, G:0.20, T:0.38
Consensus pattern (81 bp):
AGGGTATTTCAATAATTTCACAAATCGAGGGTAAAACGGTAATTCTATAAACTAGGGGTACTTTG
ATAATTTTACAAGTCG
Found at i:13058 original size:27 final size:27
Alignment explanation
Indices: 12693--13051 Score: 405
Period size: 27 Copynumber: 13.3 Consensus size: 27
12683 AGGGTAAAAC
* * * *
12693 GGTAATTCTATAAATCAGTGGTACTTT
1 GGTAATTTTATAAACCAGGGGTATTTT
* ** *
12720 GGTAATTTTACAAGTC-GAGGGTATTTC
1 GGTAATTTTATAAACCAG-GGGTATTTT
** * * *
12747 AATAATTTCACAAATCAGGGGTATTTT
1 GGTAATTTTATAAACCAGGGGTATTTT
*
12774 GGTAATTTTATAAACTAGGGGTATTTT
1 GGTAATTTTATAAACCAGGGGTATTTT
* *
12801 GATAATTTTACAAACCAGGGGTATTTT
1 GGTAATTTTATAAACCAGGGGTATTTT
* *
12828 GGTAATTTTTTAAACCAAGGGTATTTT
1 GGTAATTTTATAAACCAGGGGTATTTT
*
12855 GGTAATTTTACAAACCAGGGGTATTTT
1 GGTAATTTTATAAACCAGGGGTATTTT
* * *
12882 GGTGATTTTATAAACCAAGGGTATTCT
1 GGTAATTTTATAAACCAGGGGTATTTT
* * *
12909 AGTAATTTTACAAACCAAGGGTATTTT
1 GGTAATTTTATAAACCAGGGGTATTTT
* * *
12936 GGTAATTTTGTAAACCAAGTGTATTTT
1 GGTAATTTTATAAACCAGGGGTATTTT
*
12963 GGTAATTTTACAAACCAGGGGTATTTT
1 GGTAATTTTATAAACCAGGGGTATTTT
* * *
12990 GGTGATTTTATAAACCAAGGGTTTTTT
1 GGTAATTTTATAAACCAGGGGTATTTT
*
13017 AGTAATTTTATAAACCAGGGGTATTTT
1 GGTAATTTTATAAACCAGGGGTATTTT
13044 GGTAATTT
1 GGTAATTT
13052 GGTAAACTAA
Statistics
Matches: 278, Mismatches: 52, Indels: 4
0.83 0.16 0.01
Matches are distributed among these distances:
26 1 0.00
27 276 0.99
28 1 0.00
ACGTcount: A:0.31, C:0.09, G:0.20, T:0.40
Consensus pattern (27 bp):
GGTAATTTTATAAACCAGGGGTATTTT
Found at i:13058 original size:54 final size:54
Alignment explanation
Indices: 12694--13051 Score: 466
Period size: 54 Copynumber: 6.6 Consensus size: 54
12684 GGGTAAAACG
* * * * * * ** * *
12694 GTAATTCTATAAATCAGTGGTACTTTGGTAATTTTACAAGTCGAGGGTATTTCA
1 GTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAACCAAGGGTATTTTA
* * * * *
12748 ATAATTTCACAAATCAGGGGTATTTTGGTAATTTTATAAACTAGGGGTATTTT-
1 GTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAACCAAGGGTATTTTA
* *
12801 GATAATTTTACAAACCAGGGGTATTTTGGTAATTTTTTAAACCAAGGGTATTTTG
1 G-TAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAACCAAGGGTATTTTA
* *
12856 GTAATTTTACAAACCAGGGGTATTTTGGTGATTTTATAAACCAAGGGTATTCTA
1 GTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAACCAAGGGTATTTTA
* * * *
12910 GTAATTTTACAAACCAAGGGTATTTTGGTAATTTTGTAAACCAAGTGTATTTTG
1 GTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAACCAAGGGTATTTTA
* *
12964 GTAATTTTACAAACCAGGGGTATTTTGGTGATTTTATAAACCAAGGGTTTTTTA
1 GTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAACCAAGGGTATTTTA
*
13018 GTAATTTTATAAACCAGGGGTATTTTGGTAATTT
1 GTAATTTTACAAACCAGGGGTATTTTGGTAATTT
13052 GGTAAACTAA
Statistics
Matches: 265, Mismatches: 37, Indels: 4
0.87 0.12 0.01
Matches are distributed among these distances:
54 264 1.00
55 1 0.00
ACGTcount: A:0.31, C:0.09, G:0.20, T:0.40
Consensus pattern (54 bp):
GTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAACCAAGGGTATTTTA
Found at i:21221 original size:47 final size:46
Alignment explanation
Indices: 21036--21582 Score: 736
Period size: 47 Copynumber: 11.6 Consensus size: 46
21026 TATTTGAATA
*
21036 AATGTGAAATGT-TATATGTGATAAGGCCTAATGGCCAATGTGATG
1 AATGTGAAATGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
21081 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAA-TG--TATATATGTGATAAGGCCGAATGGCCAATGTGATG
* * *
21130 AATGTGAAAGTGTATATATATTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAA-TGTATATAT-GTGATAAGGCCGAATGGCCAATGTGATG
*
21178 AATGTGAAAGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAA-TGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
21225 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAA-TG--TATATATGTGATAAGGCCGAATGGCCAATGTGATG
* * *
21274 AATGTGAACATGTGTATGTGGGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAA-ATGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
21321 AATGTGAACATGCATATATGAGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAA-ATGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* * *
21368 AATGTGAACATGTGTATGTGTGATAAGGCCGAACGGCCAATGTGATG
1 AATGTGAA-ATGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* * *
21415 AATATGAACATGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAA-ATGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
21462 AATGTGAACATGCATATATGAGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAA-ATGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
21509 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAA-TGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* * *
21556 GATGTGGAAGTGTATAAATGTGATAAG
1 AATGT-GAAATGTATATATGTGATAAG
21583 TCCCGAAGGG
Statistics
Matches: 461, Mismatches: 31, Indels: 18
0.90 0.06 0.04
Matches are distributed among these distances:
45 9 0.02
46 3 0.01
47 310 0.67
48 49 0.11
49 89 0.19
50 1 0.00
ACGTcount: A:0.34, C:0.10, G:0.29, T:0.28
Consensus pattern (46 bp):
AATGTGAAATGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
Found at i:21460 original size:22 final size:22
Alignment explanation
Indices: 21433--21554 Score: 61
Period size: 22 Copynumber: 5.3 Consensus size: 22
21423 CATGTGTATG
21433 TGTGATAAGGCCGAATGGCCAA
1 TGTGATAAGGCCGAATGGCCAA
* * *
21455 TGTGATGAATG-TGAACAT-GCATATA
1 TGTGAT-AAGGCCG-A-ATGGC-CA-A
*
21480 TGAGATAAGGCCGAATGGCCAA
1 TGTGATAAGGCCGAATGGCCAA
* * ***
21502 TGTGATGAATG-TGAAAGTGTATATA
1 TGTGAT-AAGGCCG-AA-TGGCCA-A
21527 TGTGATAAGGCCGAATGGCCAA
1 TGTGATAAGGCCGAATGGCCAA
21549 TGTGAT
1 TGTGAT
21555 GGATGTGGAA
Statistics
Matches: 70, Mismatches: 18, Indels: 24
0.62 0.16 0.21
Matches are distributed among these distances:
22 21 0.30
23 17 0.24
24 17 0.24
25 15 0.21
ACGTcount: A:0.34, C:0.11, G:0.30, T:0.25
Consensus pattern (22 bp):
TGTGATAAGGCCGAATGGCCAA
Found at i:23719 original size:38 final size:38
Alignment explanation
Indices: 23655--23729 Score: 114
Period size: 38 Copynumber: 2.0 Consensus size: 38
23645 AATCCGATTT
*
23655 TAAAGACCCGCTGACTATATAAAGAGATTATGTCCGGG
1 TAAAGACCCGATGACTATATAAAGAGATTATGTCCGGG
* * *
23693 TAAAGACCCGATGGCTATGTACAGAGATTATGTCCGG
1 TAAAGACCCGATGACTATATAAAGAGATTATGTCCGG
23730 ATTAAAATTC
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
38 33 1.00
ACGTcount: A:0.32, C:0.19, G:0.25, T:0.24
Consensus pattern (38 bp):
TAAAGACCCGATGACTATATAAAGAGATTATGTCCGGG
Found at i:23895 original size:40 final size:40
Alignment explanation
Indices: 23783--24142 Score: 562
Period size: 40 Copynumber: 9.1 Consensus size: 40
23773 AGGTCTCGAC
*
23783 GATG-ATCCGGGCTAAGTCCCGAAGAGCATTTGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
23822 GATGTATCCGGGCTAAGT-CCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
23861 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
*
23901 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
*
23941 GATGTACCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
*
23981 GATGTATCCGGGCTAAGTCTCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
* *
24021 GATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
* * ** *
24061 GATATATCCGTGCTAAACCCCGAAGAGCATTCGTGCTGGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
* * * * *
24101 GTTATATCCGGGCTAGGTCCCGAAGAGCAATCATGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
24141 GA
1 GA
24143 CGTGTATTCG
Statistics
Matches: 294, Mismatches: 25, Indels: 3
0.91 0.08 0.01
Matches are distributed among these distances:
39 42 0.14
40 252 0.86
ACGTcount: A:0.24, C:0.22, G:0.29, T:0.25
Consensus pattern (40 bp):
GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
Found at i:27573 original size:47 final size:47
Alignment explanation
Indices: 27489--28037 Score: 929
Period size: 47 Copynumber: 11.6 Consensus size: 47
27479 ATATTTGAAT
27489 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
27538 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
27585 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
27634 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
27681 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
27730 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
27777 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
27824 AATGTGAAAGTGTATATATGTGATAAGGCCTAAT-GCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
27870 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
27917 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * * * * *
27964 AATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
28011 GATGTGAAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
28038 TCCCGAAGGG
Statistics
Matches: 477, Mismatches: 18, Indels: 12
0.94 0.04 0.02
Matches are distributed among these distances:
46 46 0.10
47 329 0.69
49 102 0.21
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:27819 original size:94 final size:95
Alignment explanation
Indices: 27489--28037 Score: 935
Period size: 96 Copynumber: 5.8 Consensus size: 95
27479 ATATTTGAAT
27489 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
1 AATGTGAAAGTG-ATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
* *
27554 TATGTGATAAGGCCGAATGGCCAATGTGATG
65 TATGTGATAAGGCCTAATGGCCGATGTGATG
27585 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
1 AATGTGAAAGTG-ATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
* *
27650 TATGTGATAAGGCCGAATGGCCAATGTGATG
65 TATGTGATAAGGCCTAATGGCCGATGTGATG
27681 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
1 AATGTGAAAGTG-ATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
27746 TATGTGATAAGGCCTAATGGCCGATGTGATG
65 TATGTGATAAGGCCTAATGGCCGATGTGATG
27777 AATGTGAAAGTG-TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 AATGTGAAAGTGATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
27841 ATGTGATAAGGCCTAAT-GCCGATGTGATG
66 ATGTGATAAGGCCTAATGGCCGATGTGATG
27870 AATGTGAAAGTG-TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 AATGTGAAAGTGATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
27934 ATGTGATAAGGCCTAATGGCCGATGTGATG
66 ATGTGATAAGGCCTAATGGCCGATGTGATG
* * * * * * * *
27964 AATGTGAAAGTG-TATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATAA
1 AATGTGAAAGTGATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
28028 ATGTGATAAG
66 ATGTGATAAG
28038 TCCCGAAGGG
Statistics
Matches: 442, Mismatches: 10, Indels: 4
0.97 0.02 0.01
Matches are distributed among these distances:
93 93 0.21
94 147 0.33
96 202 0.46
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (95 bp):
AATGTGAAAGTGATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
ATGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:30236 original size:38 final size:38
Alignment explanation
Indices: 30172--30246 Score: 114
Period size: 38 Copynumber: 2.0 Consensus size: 38
30162 AATCCGATTT
*
30172 TAAAGACCCGCTGACTATATAAAGAGATTATGTCCGGG
1 TAAAGACCCGATGACTATATAAAGAGATTATGTCCGGG
* * *
30210 TAAAGACCCGATGGCTATGTACAGAGATTATGTCCGG
1 TAAAGACCCGATGACTATATAAAGAGATTATGTCCGG
30247 ATTAAAATTC
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
38 33 1.00
ACGTcount: A:0.32, C:0.19, G:0.25, T:0.24
Consensus pattern (38 bp):
TAAAGACCCGATGACTATATAAAGAGATTATGTCCGGG
Found at i:30359 original size:40 final size:40
Alignment explanation
Indices: 30300--30659 Score: 571
Period size: 40 Copynumber: 9.1 Consensus size: 40
30290 AGGTCTCGAC
*
30300 GATG-ATCCGGGCTAAGTCCCGAAGAGCATTTGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
30339 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
30379 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
*
30419 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
30459 GATGTA-CCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
*
30498 GATGTATCCGGGCTAAGTCTCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
* *
30538 GATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
* * ** *
30578 GATATATCCGTGCTAAACCCCGAAGAGCATTCGTGCTGGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
* * * * *
30618 GTTATATCCGGGCTAGGTCCCGAAGAGCAATCATGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
30658 GA
1 GA
30660 CGTGTATTCG
Statistics
Matches: 296, Mismatches: 23, Indels: 3
0.92 0.07 0.01
Matches are distributed among these distances:
39 42 0.14
40 254 0.86
ACGTcount: A:0.24, C:0.22, G:0.29, T:0.25
Consensus pattern (40 bp):
GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
Found at i:30600 original size:159 final size:160
Alignment explanation
Indices: 30304--30659 Score: 570
Period size: 159 Copynumber: 2.2 Consensus size: 160
30294 CTCGACGATG
*
30304 ATCCGGGCTAAGTCCCGAAGAGCATTTGTGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCAT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCAT
* *
30369 TCGTGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTA
66 TCGTGCTAGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTA
** *
30434 AGTCCCGAAGAGCATTCATGCTAGTGATGT
131 AACCCCGAAGAGCATTCATGCTAGTGATAT
*
30464 A-CCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCTCGAAGAGCAT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCAT
* *
30528 TCGTGCTAGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATATATCCGTGCTA
66 TCGTGCTAGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTA
* * *
30593 AACCCCGAAGAGCATTCGTGCTGGTGTTAT
131 AACCCCGAAGAGCATTCATGCTAGTGATAT
* * *
30623 ATCCGGGCTAGGTCCCGAAGAGCAATCATGCTAGTGA
1 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGA
30660 CGTGTATTCG
Statistics
Matches: 180, Mismatches: 15, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
159 147 0.82
160 33 0.18
ACGTcount: A:0.24, C:0.22, G:0.29, T:0.25
Consensus pattern (160 bp):
ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCAT
TCGTGCTAGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTA
AACCCCGAAGAGCATTCATGCTAGTGATAT
Found at i:36426 original size:43 final size:42
Alignment explanation
Indices: 36335--36458 Score: 133
Period size: 42 Copynumber: 2.9 Consensus size: 42
36325 AGTACCGTAC
* * ** ** *
36335 CAATGCCATATCCCAAATATGGTCTTGTATGTAATCTCGTAT
1 CAATGCCATAGCCCAGATATGGTCTTACACATAATCTCATAT
*
36377 CAATGCCAATAGCCCAGCTATGGTCTTACACA-AAGTCTCATAT
1 CAATGCC-ATAGCCCAGATATGGTCTTACACATAA-TCTCATAT
* *
36420 CGATGCCATATCCCAGATATGGTCTTACACATAATCTCA
1 CAATGCCATAGCCCAGATATGGTCTTACACATAATCTCA
36459 GTAACCCTAA
Statistics
Matches: 68, Mismatches: 11, Indels: 6
0.80 0.13 0.07
Matches are distributed among these distances:
42 36 0.53
43 32 0.47
ACGTcount: A:0.31, C:0.26, G:0.14, T:0.30
Consensus pattern (42 bp):
CAATGCCATAGCCCAGATATGGTCTTACACATAATCTCATAT
Found at i:43078 original size:40 final size:40
Alignment explanation
Indices: 43033--43123 Score: 110
Period size: 40 Copynumber: 2.3 Consensus size: 40
43023 CAGTTATTTG
** *
43033 TGGCACTTAGTGTGCGATACGACATAACTTTGATTATATA
1 TGGCACTTAGTGTGCGATACGACATAACTACGACTATATA
* ** * *
43073 TGGCACTTAGTGTGTGATTGGACATAGCTACGGCTATATA
1 TGGCACTTAGTGTGCGATACGACATAACTACGACTATATA
43113 TGGCACTTAGT
1 TGGCACTTAGT
43124 TTGTGATTTG
Statistics
Matches: 43, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
40 43 1.00
ACGTcount: A:0.26, C:0.15, G:0.24, T:0.34
Consensus pattern (40 bp):
TGGCACTTAGTGTGCGATACGACATAACTACGACTATATA
Found at i:47903 original size:39 final size:39
Alignment explanation
Indices: 47845--47923 Score: 122
Period size: 39 Copynumber: 2.0 Consensus size: 39
47835 GCTCTGATGA
* *
47845 GCTTTAGTTAGCCTTCGGGCTTCCGATTAACACTTGTGT
1 GCTTTAGTTAGCCTCCGGGCTTCCGATTAACACTTATGT
* *
47884 GCTTTAGTTAGCCTCCGGGCTTCCGTTTAGCACTTATGT
1 GCTTTAGTTAGCCTCCGGGCTTCCGATTAACACTTATGT
47923 G
1 G
47924 ATTCAACTAG
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
39 36 1.00
ACGTcount: A:0.14, C:0.24, G:0.24, T:0.38
Consensus pattern (39 bp):
GCTTTAGTTAGCCTCCGGGCTTCCGATTAACACTTATGT
Found at i:56905 original size:24 final size:24
Alignment explanation
Indices: 56873--56934 Score: 88
Period size: 24 Copynumber: 2.5 Consensus size: 24
56863 CTCATAAAAG
56873 CCATAATCGGGAAGTTCACAAAGAA
1 CCAT-ATCGGGAAGTTCACAAAGAA
* *
56898 CCTTATCGAGAAGTTCACAAAGAA
1 CCATATCGGGAAGTTCACAAAGAA
*
56922 CCATATTGGGAAG
1 CCATATCGGGAAG
56935 CTCTGGATAG
Statistics
Matches: 32, Mismatches: 5, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
24 29 0.91
25 3 0.09
ACGTcount: A:0.40, C:0.19, G:0.21, T:0.19
Consensus pattern (24 bp):
CCATATCGGGAAGTTCACAAAGAA
Found at i:74656 original size:28 final size:28
Alignment explanation
Indices: 74616--74689 Score: 96
Period size: 28 Copynumber: 2.6 Consensus size: 28
74606 TCAGCTAAAT
*
74616 ATGGCACTTAGTGTGCGAGACATTGAA-A
1 ATGGCACTTAGTGTGCGAGACA-TCAAGA
* * *
74644 ATGGCATTTAGTGTGTGAGACATCAAGT
1 ATGGCACTTAGTGTGCGAGACATCAAGA
74672 ATGGCACTTAGTGTGCGA
1 ATGGCACTTAGTGTGCGA
74690 AATTTTGAGT
Statistics
Matches: 39, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
27 3 0.08
28 36 0.92
ACGTcount: A:0.28, C:0.14, G:0.30, T:0.28
Consensus pattern (28 bp):
ATGGCACTTAGTGTGCGAGACATCAAGA
Found at i:77950 original size:46 final size:45
Alignment explanation
Indices: 77892--78067 Score: 128
Period size: 46 Copynumber: 3.8 Consensus size: 45
77882 TCACTTGTGT
* *
77892 GAGCTAGTGTAAGACATGTCTCGGACATGCATCGGCCACATTATGA-
1 GAGCCAGTGTAAGACATGTCT-GGACATGCATCGGCC-CATTAAGAC
*
77938 GAGCCAGTGTAAGACCATGTCTGGAACATGGCATCAG--CATTAAGAC
1 GAGCCAGTGTAAGA-CATGTCTGG-ACAT-GCATCGGCCCATTAAGAC
* * **
77984 TAGCGCTAGTGTAAGACATGTTTGGGACATGCATCGG-CC-TCGAGAC
1 GAGC-C-AGTGTAAGACATGTCT-GGACATGCATCGGCCCATTAAGAC
* * *
78030 GTAAGCCAATGTAAAACATGTTTGGGACATGCATCGGC
1 G--AGCCAGTGTAAGACATGTCT-GGACATGCATCGGC
78068 TATGAGATGT
Statistics
Matches: 108, Mismatches: 11, Indels: 21
0.77 0.08 0.15
Matches are distributed among these distances:
45 7 0.06
46 57 0.53
47 24 0.22
48 20 0.19
ACGTcount: A:0.29, C:0.21, G:0.27, T:0.23
Consensus pattern (45 bp):
GAGCCAGTGTAAGACATGTCTGGACATGCATCGGCCCATTAAGAC
Found at i:79221 original size:30 final size:29
Alignment explanation
Indices: 79185--79243 Score: 82
Period size: 30 Copynumber: 2.0 Consensus size: 29
79175 AGTTTTCAGT
* * *
79185 ATCCACACGGGCAGGTTACACGCCCATGTG
1 ATCCACACGAGCAGG-CACACGCCAATGTG
79215 ATCCACACGAGCAGGCACACGCCAATGTG
1 ATCCACACGAGCAGGCACACGCCAATGTG
79244 CCAGCTCGTA
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
29 12 0.46
30 14 0.54
ACGTcount: A:0.27, C:0.34, G:0.25, T:0.14
Consensus pattern (29 bp):
ATCCACACGAGCAGGCACACGCCAATGTG
Found at i:85821 original size:58 final size:58
Alignment explanation
Indices: 85759--85880 Score: 226
Period size: 58 Copynumber: 2.1 Consensus size: 58
85749 TTAGCCAAAT
*
85759 TTTCTCTTAACCCATATAAGTCCACATATTTCATTTATTTCACATTTGAGCCCTTCAA
1 TTTCTCTTAACCCATATAAGTCCACATATTTCATTTATTTCACATTTGAGCCCCTCAA
*
85817 TTTCTCTTAACCCATATAAGTCCACATATTTCATTTATTTCACATTTTAGCCCCTCAA
1 TTTCTCTTAACCCATATAAGTCCACATATTTCATTTATTTCACATTTGAGCCCCTCAA
85875 TTTCTC
1 TTTCTC
85881 ATTTTCACAA
Statistics
Matches: 62, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
58 62 1.00
ACGTcount: A:0.26, C:0.27, G:0.04, T:0.43
Consensus pattern (58 bp):
TTTCTCTTAACCCATATAAGTCCACATATTTCATTTATTTCACATTTGAGCCCCTCAA
Found at i:85848 original size:28 final size:28
Alignment explanation
Indices: 85759--85848 Score: 76
Period size: 28 Copynumber: 3.1 Consensus size: 28
85749 TTAGCCAAAT
85759 TTTCTCTTAACCCATATAAGTCCACATA
1 TTTCTCTTAACCCATATAAGTCCACATA
* * * * * *
85787 TTTCAT-TTATTTCACATTTGAGCCCTTCA-A
1 TTTC-TCTTA--ACCCATATAAGTCC-ACATA
85817 TTTCTCTTAACCCATATAAGTCCACATA
1 TTTCTCTTAACCCATATAAGTCCACATA
85845 TTTC
1 TTTC
85849 ATTTATTTCA
Statistics
Matches: 44, Mismatches: 12, Indels: 12
0.65 0.18 0.18
Matches are distributed among these distances:
27 2 0.05
28 21 0.48
29 2 0.05
30 17 0.39
31 2 0.05
ACGTcount: A:0.28, C:0.27, G:0.04, T:0.41
Consensus pattern (28 bp):
TTTCTCTTAACCCATATAAGTCCACATA
Found at i:91299 original size:32 final size:32
Alignment explanation
Indices: 91258--91321 Score: 101
Period size: 32 Copynumber: 2.0 Consensus size: 32
91248 TCATATGGGT
*
91258 TTGATTCTGATATAGGCTAGGCCCAACTGATA
1 TTGATTCTGAGATAGGCTAGGCCCAACTGATA
* *
91290 TTGATTCTGAGATGGGCTAGGCCCAATTGATA
1 TTGATTCTGAGATAGGCTAGGCCCAACTGATA
91322 CTGTGATGGG
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
32 29 1.00
ACGTcount: A:0.27, C:0.17, G:0.25, T:0.31
Consensus pattern (32 bp):
TTGATTCTGAGATAGGCTAGGCCCAACTGATA
Found at i:94108 original size:15 final size:15
Alignment explanation
Indices: 94088--94118 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
94078 AATTATGAAA
94088 GATATGTTTTGGATT
1 GATATGTTTTGGATT
*
94103 GATATGTTTTGTATT
1 GATATGTTTTGGATT
94118 G
1 G
94119 GAATTTTGAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.19, C:0.00, G:0.26, T:0.55
Consensus pattern (15 bp):
GATATGTTTTGGATT
Found at i:96597 original size:24 final size:24
Alignment explanation
Indices: 96564--96621 Score: 98
Period size: 24 Copynumber: 2.4 Consensus size: 24
96554 TGTCGAGAGT
96564 ATAGCGCCTGCTCCCGCGAAAGGG
1 ATAGCGCCTGCTCCCGCGAAAGGG
* *
96588 ATAGCACCTGCTTCCGCGAAAGGG
1 ATAGCGCCTGCTCCCGCGAAAGGG
96612 ATAGCGCCTG
1 ATAGCGCCTG
96622 TTGAAATAAA
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 31 1.00
ACGTcount: A:0.22, C:0.31, G:0.31, T:0.16
Consensus pattern (24 bp):
ATAGCGCCTGCTCCCGCGAAAGGG
Found at i:102224 original size:29 final size:27
Alignment explanation
Indices: 102206--102275 Score: 113
Period size: 27 Copynumber: 2.6 Consensus size: 27
102196 ATATTAAGTC
102206 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTCAGTGCTATATAATCAACT
*
102233 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTCAGTGCTATATAATC-AACT
*
102261 CGCACACTTAGTGCT
1 CGCACACTCAGTGCT
102276 GTACAATTTA
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.31, C:0.29, G:0.13, T:0.27
Consensus pattern (27 bp):
CGCACACTCAGTGCTATATAATCAACT
Found at i:102269 original size:28 final size:28
Alignment explanation
Indices: 102206--102303 Score: 135
Period size: 28 Copynumber: 3.5 Consensus size: 28
102196 ATATTAAGTC
*
102206 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
102233 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
102261 CGCACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
102290 CGCACACTTAGTGC
1 CGCACACTTAGTGC
102304 CAATCTCATG
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 22 0.34
28 23 0.36
29 19 0.30
ACGTcount: A:0.32, C:0.29, G:0.13, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:107917 original size:16 final size:16
Alignment explanation
Indices: 107892--107927 Score: 63
Period size: 16 Copynumber: 2.2 Consensus size: 16
107882 ATTCAAGCAA
*
107892 ACAAGCAAAATTTTGT
1 ACAAGAAAAATTTTGT
107908 ACAAGAAAAATTTTGT
1 ACAAGAAAAATTTTGT
107924 ACAA
1 ACAA
107928 CCACTGAAGC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.50, C:0.11, G:0.11, T:0.28
Consensus pattern (16 bp):
ACAAGAAAAATTTTGT
Found at i:109785 original size:17 final size:16
Alignment explanation
Indices: 109754--109787 Score: 50
Period size: 17 Copynumber: 2.1 Consensus size: 16
109744 AAATATTATG
109754 AAATAAAAACAAACAA
1 AAATAAAAACAAACAA
*
109770 AAATAAACATCAAACAA
1 AAATAAA-AACAAACAA
109787 A
1 A
109788 TGTCATCCCT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 7 0.44
17 9 0.56
ACGTcount: A:0.76, C:0.15, G:0.00, T:0.09
Consensus pattern (16 bp):
AAATAAAAACAAACAA
Found at i:111589 original size:22 final size:22
Alignment explanation
Indices: 111528--111597 Score: 95
Period size: 22 Copynumber: 3.2 Consensus size: 22
111518 AAGCCACCAT
* *
111528 TGATTTGCAGATAAACTACCAC
1 TGATTTGTAGATAAACTGCCAC
*
111550 TGATCTGTAGATAAACTGCCAC
1 TGATTTGTAGATAAACTGCCAC
* *
111572 TGATTTGTAGATATACTGTCAC
1 TGATTTGTAGATAAACTGCCAC
111594 TGAT
1 TGAT
111598 AACATTAGTG
Statistics
Matches: 42, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 42 1.00
ACGTcount: A:0.31, C:0.19, G:0.17, T:0.33
Consensus pattern (22 bp):
TGATTTGTAGATAAACTGCCAC
Found at i:111782 original size:18 final size:18
Alignment explanation
Indices: 111748--111782 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
111738 ATATGCCCTC
*
111748 ATAATCACTTATCACATA
1 ATAATCACTTATAACATA
*
111766 ATAATCACTTTTAACAT
1 ATAATCACTTATAACAT
111783 GTTTAAAATG
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.43, C:0.20, G:0.00, T:0.37
Consensus pattern (18 bp):
ATAATCACTTATAACATA
Found at i:114086 original size:15 final size:16
Alignment explanation
Indices: 114066--114095 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
114056 TGGTGCCTTG
114066 TTGAT-ATGTGTTAAT
1 TTGATAATGTGTTAAT
114081 TTGATAATGTGTTAA
1 TTGATAATGTGTTAA
114096 AGCATGTTTG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.30, C:0.00, G:0.20, T:0.50
Consensus pattern (16 bp):
TTGATAATGTGTTAAT
Found at i:114770 original size:24 final size:24
Alignment explanation
Indices: 114738--114786 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
114728 TAGCTTGTTT
114738 ATGCATGGTCTTAGTGCAAATTGA
1 ATGCATGGTCTTAGTGCAAATTGA
114762 ATGCATGGTCTTAGTGCAAATTGA
1 ATGCATGGTCTTAGTGCAAATTGA
114786 A
1 A
114787 GGCTTGTTTA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.31, C:0.12, G:0.24, T:0.33
Consensus pattern (24 bp):
ATGCATGGTCTTAGTGCAAATTGA
Found at i:116344 original size:24 final size:24
Alignment explanation
Indices: 116269--116344 Score: 59
Period size: 24 Copynumber: 3.2 Consensus size: 24
116259 TAGGGAATCC
* *
116269 ATTGATTTGGCTTCGGGCCATGAT
1 ATTGATTTGGCTTCGAGCCATTAT
* * *
116293 ATTGATAATTCAGCTGCGAG---TTAC
1 ATTGAT--TT-GGCTTCGAGCCATTAT
116317 ATTGATTTGGCTTCGAGCCATTAT
1 ATTGATTTGGCTTCGAGCCATTAT
116341 ATTG
1 ATTG
116345 GCACTTTGAG
Statistics
Matches: 38, Mismatches: 8, Indels: 12
0.66 0.14 0.21
Matches are distributed among these distances:
21 7 0.18
22 2 0.05
24 21 0.55
26 2 0.05
27 6 0.16
ACGTcount: A:0.22, C:0.16, G:0.24, T:0.38
Consensus pattern (24 bp):
ATTGATTTGGCTTCGAGCCATTAT
Found at i:116501 original size:48 final size:48
Alignment explanation
Indices: 116268--116502 Score: 206
Period size: 48 Copynumber: 4.9 Consensus size: 48
116258 TTAGGGAATC
** * *
116268 CATTGATTTGGCTTCGGGCCATGATATTGATAATTCA-GCTGCGAGTTA
1 CATTGATTTGGCTTCGGGCCATGATATTGGCACTT-AGGGTGCGAGTTA
* * * * *
116316 CATTGATTTGGCTTCGAGCCATTATATTGGCACTTTGAGTGCGAGTAA
1 CATTGATTTGGCTTCGGGCCATGATATTGGCACTTAGGGTGCGAGTTA
* * * * *
116364 CATTGATTTTGCTTTGGGCTATGATATCGGCAC-TACGGGTGCGTGTTA
1 CATTGATTTGGCTTCGGGCCATGATATTGGCACTTA-GGGTGCGAGTTA
* * ** * * *
116412 CTTTAATTTGGCTTTCGGGCCATGATAACGGTACTTCGGGTGTGAGCTT-
1 CATTGATTTGGC-TTCGGGCCATGATATTGGCACTTAGGGTGCGAG-TTA
* *
116461 CATTGATTTGGCTTCGGGACATGATATTGGCAGTTAGGGTGC
1 CATTGATTTGGCTTCGGGCCATGATATTGGCACTTAGGGTGC
116503 AAGACTCCCA
Statistics
Matches: 144, Mismatches: 38, Indels: 10
0.75 0.20 0.05
Matches are distributed among these distances:
47 1 0.01
48 106 0.74
49 34 0.24
50 3 0.02
ACGTcount: A:0.20, C:0.17, G:0.28, T:0.36
Consensus pattern (48 bp):
CATTGATTTGGCTTCGGGCCATGATATTGGCACTTAGGGTGCGAGTTA
Found at i:116501 original size:97 final size:94
Alignment explanation
Indices: 116268--116502 Score: 204
Period size: 97 Copynumber: 2.4 Consensus size: 94
116258 TTAGGGAATC
** * *
116268 CATTGATTTGGCTTCGGGCCATGATATTGATAATTCA-GCTGCGAGTTACATTGATTTGGCTTCG
1 CATTGATTTGGCTTCGGG-CATGATATTG-GCATT-AGGGTGCGAGTTACATTAATTTGGCTTCG
* ** *
116332 AGCCATTATATTGGCACTTTGAGTGCGAGTAA
63 AGCCATGATAACGGCACTTCGAGTGCGAGTAA
* * * * * *
116364 CATTGATTTTGCTTTGGGCTATGATATCGGCACTACGGGTGCGTGTTACTTTAATTTGGCTTTCG
1 CATTGATTTGGCTTCGGGC-ATGATATTGGCATTA-GGGTGCGAGTTACATTAATTTGGC-TTCG
* * * * *
116429 GGCCATGATAACGGTACTTCGGGTGTGAGCT-T
63 AGCCATGATAACGGCACTTCGAGTGCGAG-TAA
116461 CATTGATTTGGCTTCGGGACATGATATTGGCAGTTAGGGTGC
1 CATTGATTTGGCTTCGGG-CATGATATTGGCA-TTAGGGTGC
116503 AAGACTCCCA
Statistics
Matches: 109, Mismatches: 23, Indels: 13
0.75 0.16 0.09
Matches are distributed among these distances:
94 1 0.01
95 3 0.03
96 43 0.39
97 58 0.53
98 4 0.04
ACGTcount: A:0.20, C:0.17, G:0.28, T:0.36
Consensus pattern (94 bp):
CATTGATTTGGCTTCGGGCATGATATTGGCATTAGGGTGCGAGTTACATTAATTTGGCTTCGAGC
CATGATAACGGCACTTCGAGTGCGAGTAA
Found at i:119937 original size:27 final size:26
Alignment explanation
Indices: 119889--119948 Score: 66
Period size: 27 Copynumber: 2.3 Consensus size: 26
119879 GCAAGGCTGT
*
119889 CAGATATTGTGACGAAGTCACCAAATA
1 CAGATATTGTGACGAAGCCACCAAA-A
* * * *
119916 CAGATATTGTGGCTAGGCCACCAGAA
1 CAGATATTGTGACGAAGCCACCAAAA
119942 CAGATAT
1 CAGATAT
119949 ATATATGTGG
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
26 8 0.29
27 20 0.71
ACGTcount: A:0.37, C:0.20, G:0.22, T:0.22
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAAAA
Found at i:120035 original size:27 final size:26
Alignment explanation
Indices: 119988--120038 Score: 66
Period size: 27 Copynumber: 1.9 Consensus size: 26
119978 CGAGGCTGCC
*
119988 AGATATTGTGACGAAGTCACCAGAAT
1 AGATATTGTGACGAAGCCACCAGAAT
* *
120014 AGATATATGTGGCGAGGCCACCAGA
1 AGATAT-TGTGACGAAGCCACCAGA
120039 TTGTAGCGAG
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
26 6 0.29
27 15 0.71
ACGTcount: A:0.35, C:0.18, G:0.27, T:0.20
Consensus pattern (26 bp):
AGATATTGTGACGAAGCCACCAGAAT
Found at i:127494 original size:27 final size:26
Alignment explanation
Indices: 127447--127497 Score: 66
Period size: 27 Copynumber: 1.9 Consensus size: 26
127437 CGAGGCTACA
*
127447 AGATATTGTGACGAAGTCACCAGAAC
1 AGATATTGTGACGAAGCCACCAGAAC
* *
127473 AGATATATGTGGCGAGGCCACCAGA
1 AGATAT-TGTGACGAAGCCACCAGA
127498 TTGCAGTGAG
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
26 6 0.29
27 15 0.71
ACGTcount: A:0.35, C:0.20, G:0.27, T:0.18
Consensus pattern (26 bp):
AGATATTGTGACGAAGCCACCAGAAC
Found at i:132381 original size:15 final size:15
Alignment explanation
Indices: 132361--132455 Score: 113
Period size: 15 Copynumber: 6.4 Consensus size: 15
132351 GTATCTTGGG
*
132361 TTTCTTTATCCTGGA
1 TTTCTTTATTCTGGA
*
132376 TCTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
132391 TTTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
* *
132406 TTTCTTTATTTTGGG
1 TTTCTTTATTCTGGA
*
132421 TTTCTCTA-TCTTGGA
1 TTTCTTTATTC-TGGA
*
132436 TTTCTTTATTC-GGT
1 TTTCTTTATTCTGGA
132450 TTTCTT
1 TTTCTT
132456 ATTATCTTTG
Statistics
Matches: 68, Mismatches: 10, Indels: 5
0.82 0.12 0.06
Matches are distributed among these distances:
14 9 0.13
15 57 0.84
16 2 0.03
ACGTcount: A:0.11, C:0.16, G:0.14, T:0.60
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:139735 original size:93 final size:93
Alignment explanation
Indices: 139607--139777 Score: 272
Period size: 93 Copynumber: 1.8 Consensus size: 93
139597 GCCTCTAAGT
* *
139607 GAACTCGGACCCAACTCAACGAGCTCAGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACCCAACTCAACGAGCTCAGGCATTCGCATCCATAAGTGAACTCGGACCCAACTCAA
139672 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
* * * *
139700 GAACTCTGACTCAACTCAACGAGTTC-GGACATTCGCATCCATAGGTGAACTCGGACCCAACTCA
1 GAACTCGGACCCAACTCAACGAGCTCAGG-CATTCGCATCCATAAGTGAACTCGGACCCAACTCA
139764 ACGAGTTCGGATGC
65 ACGAGTTCGGATGC
139778 TCAACCATCC
Statistics
Matches: 71, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
92 2 0.03
93 69 0.97
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.20
Consensus pattern (93 bp):
GAACTCGGACCCAACTCAACGAGCTCAGGCATTCGCATCCATAAGTGAACTCGGACCCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:139772 original size:46 final size:45
Alignment explanation
Indices: 139604--139774 Score: 163
Period size: 46 Copynumber: 3.7 Consensus size: 45
139594 CCCGCCTCTA
* *
139604 AGTGAACTCGGACCCAACTCAACGAGCTCAGG-CGTTCGCATCCAT
1 AGTGAACTCGGACCCAACTCAACGAGTTC-GGACATTCGCATCCAT
* *
139649 AAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT-C-T
1 -AGTGAACTCGGACCCAACTCAACGAGTTCGGA---C-A-TTCGCATCCAT
* * *
139697 CA-CGAACTCTGACTCAACTCAACGAGTTCGGACATTCGCATCCAT
1 -AGTGAACTCGGACCCAACTCAACGAGTTCGGACATTCGCATCCAT
139742 AGGTGAACTCGGACCCAACTCAACGAGTTCGGA
1 A-GTGAACTCGGACCCAACTCAACGAGTTCGGA
139775 TGCTCAACCA
Statistics
Matches: 103, Mismatches: 11, Indels: 22
0.76 0.08 0.16
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 3 0.03
45 3 0.03
46 54 0.52
47 28 0.27
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (45 bp):
AGTGAACTCGGACCCAACTCAACGAGTTCGGACATTCGCATCCAT
Found at i:147290 original size:46 final size:47
Alignment explanation
Indices: 147237--147404 Score: 143
Period size: 46 Copynumber: 3.6 Consensus size: 47
147227 TTATTTGTTT
*
147237 GCCAGTGTAAGA-CATGTTTGGGACATGCATTGGCCTCGAAATGTAA
1 GCCAGTGTAAGACCATGTCTGGGACATGCATTGGCCTCGAAATGTAA
* **
147283 GCCAGTGTAAGA-CATGTCTAGGACATGCATCAG-CTAC-AAGATGT--
1 GCCAGTGTAAGACCATGTCTGGGACATGCATTGGCCT-CGAA-ATGTAA
* * * *
147327 GTCAGTGTAAGACCATGTCTGGGACATGGCATTGGCAC-GGATATTTGAGA
1 GCCAGTGTAAGACCATGTCTGGGACAT-GCATTGGC-CTCGAAATGT-A-A
* *
147377 GCTAGTGTAAGACCATGTTTGGGACATG
1 GCCAGTGTAAGACCATGTCTGGGACATG
147405 GCGTCAACCT
Statistics
Matches: 97, Mismatches: 14, Indels: 19
0.75 0.11 0.15
Matches are distributed among these distances:
44 11 0.11
45 17 0.18
46 42 0.43
47 1 0.01
48 1 0.01
49 1 0.01
50 24 0.25
ACGTcount: A:0.28, C:0.17, G:0.29, T:0.26
Consensus pattern (47 bp):
GCCAGTGTAAGACCATGTCTGGGACATGCATTGGCCTCGAAATGTAA
Found at i:162072 original size:42 final size:42
Alignment explanation
Indices: 161951--162072 Score: 131
Period size: 43 Copynumber: 2.9 Consensus size: 42
161941 TATCCTACCA
* * *
161951 ATGCCATATCCTAGATATGGTCTTACATGTAATCTCGTATTG
1 ATGCCATATCCTAGATATGGTCTTACACGTAATCTCATATCG
* * *
161993 ATGCCAATAGCCTAGCTATGGTCTTACAC-AAAGTCTCATATCG
1 ATGCC-ATATCCTAGATATGGTCTTACACGTAA-TCTCATATCG
**
162036 ATGCCATATCAC-AGATACAGTCTTACACGTAATCTCA
1 ATGCCATATC-CTAGATATGGTCTTACACGTAATCTCA
162073 GTAACCCTAA
Statistics
Matches: 65, Mismatches: 11, Indels: 8
0.77 0.13 0.10
Matches are distributed among these distances:
42 29 0.45
43 36 0.55
ACGTcount: A:0.30, C:0.24, G:0.15, T:0.31
Consensus pattern (42 bp):
ATGCCATATCCTAGATATGGTCTTACACGTAATCTCATATCG
Found at i:166401 original size:46 final size:46
Alignment explanation
Indices: 166351--166572 Score: 290
Period size: 46 Copynumber: 4.8 Consensus size: 46
166341 TGGTTGAGCA
166351 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
166397 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * * *
166443 TCCGAACTCGTGGAATTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
166488 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
166536 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
166573 GCGGGTTACA
Statistics
Matches: 153, Mismatches: 14, Indels: 18
0.83 0.08 0.10
Matches are distributed among these distances:
42 2 0.01
43 5 0.03
45 3 0.02
46 107 0.70
47 27 0.18
48 3 0.02
50 4 0.03
51 2 0.01
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:166519 original size:93 final size:93
Alignment explanation
Indices: 166397--166565 Score: 293
Period size: 93 Copynumber: 1.8 Consensus size: 93
166387 GATGCGAATG
* *
166397 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTGGAATTGA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTGGAATTGA
166462 GTCCGAGTTCGTGAGATGTAACTAGGCA
66 GTCCGAGTTCGTGAGATGTAACTAGGCA
* * *
166490 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGTTGA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTGGAATTGA
166555 GTCCGAGTTCG
66 GTCCGAGTTCG
166566 CTTATGGGCG
Statistics
Matches: 71, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.28
Consensus pattern (93 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTGGAATTGA
GTCCGAGTTCGTGAGATGTAACTAGGCA
Found at i:173981 original size:46 final size:46
Alignment explanation
Indices: 173931--174106 Score: 198
Period size: 46 Copynumber: 3.8 Consensus size: 46
173921 TGGTTGAGCA
173931 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
173977 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* * *
174022 CATCCGAACTCGTTGAGTTGAGTTCGAGTTCACTTATGGATACGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
174070 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
174107 GCGGGTTACA
Statistics
Matches: 108, Mismatches: 13, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 62 0.57
47 28 0.26
48 3 0.03
50 3 0.03
51 2 0.02
ACGTcount: A:0.21, C:0.20, G:0.29, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:174087 original size:93 final size:93
Alignment explanation
Indices: 173928--174099 Score: 299
Period size: 93 Copynumber: 1.8 Consensus size: 93
173918 GGATGGTTGA
* * *
173928 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACGAACGCCCGAACTCGTTGAGT
173993 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* *
174021 GCATCCGAACTCGTTGAGTTGAGTTCGAGTTCACTTATGGATACGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACGAACGCCCGAACTCGTTGAGT
174086 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
174100 CTTATGGGCG
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:182831 original size:5 final size:6
Alignment explanation
Indices: 182815--182856 Score: 50
Period size: 6 Copynumber: 6.8 Consensus size: 6
182805 TCCATTCCCC
*
182815 CTTTCT CTTTTT CTTTTT CTTTTT CCCTTTTT CTTTTT -TTTT
1 CTTTTT CTTTTT CTTTTT CTTTTT --CTTTTT CTTTTT CTTTT
182857 CTTCTCTGAA
Statistics
Matches: 33, Mismatches: 1, Indels: 5
0.85 0.03 0.13
Matches are distributed among these distances:
5 4 0.12
6 23 0.70
8 6 0.18
ACGTcount: A:0.00, C:0.21, G:0.00, T:0.79
Consensus pattern (6 bp):
CTTTTT
Found at i:182844 original size:14 final size:14
Alignment explanation
Indices: 182813--182852 Score: 57
Period size: 14 Copynumber: 3.0 Consensus size: 14
182803 TTTCCATTCC
*
182813 CCCTTTCTCTTTTT
1 CCCTTTTTCTTTTT
182827 --CTTTTTCTTTTT
1 CCCTTTTTCTTTTT
182839 CCCTTTTTCTTTTT
1 CCCTTTTTCTTTTT
182853 TTTTCTTCTC
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
12 11 0.48
14 12 0.52
ACGTcount: A:0.00, C:0.28, G:0.00, T:0.72
Consensus pattern (14 bp):
CCCTTTTTCTTTTT
Found at i:182844 original size:20 final size:19
Alignment explanation
Indices: 182816--182856 Score: 64
Period size: 20 Copynumber: 2.1 Consensus size: 19
182806 CCATTCCCCC
*
182816 TTTCTCTTTTTCTTTTTCTT
1 TTTCCCTTTTTCTTTTT-TT
182836 TTTCCCTTTTTCTTTTTTT
1 TTTCCCTTTTTCTTTTTTT
182855 TT
1 TT
182857 CTTCTCTGAA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
19 4 0.20
20 16 0.80
ACGTcount: A:0.00, C:0.20, G:0.00, T:0.80
Consensus pattern (19 bp):
TTTCCCTTTTTCTTTTTTT
Found at i:187417 original size:18 final size:18
Alignment explanation
Indices: 187403--187441 Score: 78
Period size: 18 Copynumber: 2.2 Consensus size: 18
187393 AACACATTGT
187403 CAAAATAACACACATCAA
1 CAAAATAACACACATCAA
187421 CAAAATAACACACATCAA
1 CAAAATAACACACATCAA
187439 CAA
1 CAA
187442 GGCATCAAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.62, C:0.28, G:0.00, T:0.10
Consensus pattern (18 bp):
CAAAATAACACACATCAA
Found at i:188903 original size:46 final size:46
Alignment explanation
Indices: 188815--188963 Score: 201
Period size: 46 Copynumber: 3.3 Consensus size: 46
188805 TGTCTTCGGT
* * * *
188815 CATGGTCTTATTTATTCT-CGTCTTGATGTCATAGTGTCTTTCAAC
1 CATGGTCTTATTCATTTTCCGTCATGTTGTCATAGTGTCTTTCAAC
*
188860 CATGGTCTTATTCATTTTCCGTCATGTTGTCATAGTGTATTTCAAC
1 CATGGTCTTATTCATTTTCCGTCATGTTGTCATAGTGTCTTTCAAC
* ** * *
188906 CATGGTTTTATTCATTTTCTATCGTGTTGCCATAGTGTCTTTCAAC
1 CATGGTCTTATTCATTTTCCGTCATGTTGTCATAGTGTCTTTCAAC
188952 CATGGTCTTATT
1 CATGGTCTTATT
188964 TCTTTGATTT
Statistics
Matches: 91, Mismatches: 12, Indels: 1
0.88 0.12 0.01
Matches are distributed among these distances:
45 16 0.18
46 75 0.82
ACGTcount: A:0.18, C:0.19, G:0.15, T:0.47
Consensus pattern (46 bp):
CATGGTCTTATTCATTTTCCGTCATGTTGTCATAGTGTCTTTCAAC
Found at i:189021 original size:45 final size:45
Alignment explanation
Indices: 188972--189100 Score: 154
Period size: 45 Copynumber: 2.9 Consensus size: 45
188962 TTTCTTTGAT
188972 TTGTGATGCCATAGC-ATCTTTCAG-CTATGGTCTTACTCGATAGAA
1 TTGTGATGCCATA-CTATCTTTCAGTC-ATGGTCTTACTCGATAGAA
* * *
189017 TTGTGATGCCATACTTTCTTTTAGTCATGGTCTTACTTGATAGAA
1 TTGTGATGCCATACTATCTTTCAGTCATGGTCTTACTCGATAGAA
* * * * *
189062 TCGTGATGCCATAATGTCTTTCAGTCAAGGTTTTACTCG
1 TTGTGATGCCATACTATCTTTCAGTCATGGTCTTACTCG
189101 TTTCTAGTAT
Statistics
Matches: 72, Mismatches: 10, Indels: 4
0.84 0.12 0.05
Matches are distributed among these distances:
44 1 0.01
45 70 0.97
46 1 0.01
ACGTcount: A:0.22, C:0.19, G:0.19, T:0.40
Consensus pattern (45 bp):
TTGTGATGCCATACTATCTTTCAGTCATGGTCTTACTCGATAGAA
Found at i:196799 original size:57 final size:58
Alignment explanation
Indices: 196671--196808 Score: 163
Period size: 57 Copynumber: 2.4 Consensus size: 58
196661 GTTGCTAATG
* * * * * **
196671 GGATTTAGCTTGGACTGGTAATCTTGATATAATCCCTCTCGAGCATATGTTACAATTA
1 GGATTTAGCCTGGACTGGTAATCTTAATATAAGCCCTCTCAAGCATATATTACAAAAA
* * *
196729 GGAATTAGGCTGGACTGGTAATCTTAAT-TAAGCTCT-TCTAAGCATATATTACAAAAA
1 GGATTTAGCCTGGACTGGTAATCTTAATATAAGCCCTCTC-AAGCATATATTACAAAAA
196786 GGATTTAGCCTGGACTGGTAATC
1 GGATTTAGCCTGGACTGGTAATC
196809 CTGTTATATG
Statistics
Matches: 67, Mismatches: 12, Indels: 3
0.82 0.15 0.04
Matches are distributed among these distances:
56 2 0.03
57 41 0.61
58 24 0.36
ACGTcount: A:0.30, C:0.16, G:0.20, T:0.33
Consensus pattern (58 bp):
GGATTTAGCCTGGACTGGTAATCTTAATATAAGCCCTCTCAAGCATATATTACAAAAA
Found at i:199911 original size:19 final size:19
Alignment explanation
Indices: 199887--199929 Score: 86
Period size: 19 Copynumber: 2.3 Consensus size: 19
199877 CTCTGTTCCA
199887 TTTGATATTTAGACATATG
1 TTTGATATTTAGACATATG
199906 TTTGATATTTAGACATATG
1 TTTGATATTTAGACATATG
199925 TTTGA
1 TTTGA
199930 ATGCAAACTA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 24 1.00
ACGTcount: A:0.30, C:0.05, G:0.16, T:0.49
Consensus pattern (19 bp):
TTTGATATTTAGACATATG
Found at i:202361 original size:47 final size:47
Alignment explanation
Indices: 202307--203411 Score: 1788
Period size: 47 Copynumber: 23.7 Consensus size: 47
202297 TTAGGATTCT
* * * *
202307 ATGTGATGGATGTGAACA-TGCATATATGAGATAACGCCTAATGGCCG
1 ATGTGATGAATGTGAA-AGTGTATATATGTGATAAGGCCTAATGGCCG
*
202354 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * *
202401 ATGTGATGCATGTGAAAGTATATATGTGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
*
202448 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* *
202495 ATGTGATGAATGTGAAAGTGTATATGTTGTGATAA-GCCTAATAGCCG
1 ATGTGATGAATGTGAAAGTGTATAT-ATGTGATAAGGCCTAATGGCCG
*
202542 ATGTGATGAATGTGAAAGTGTATATATGT-ATAAGGCCTAATAGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
*
202588 ATGTGATGAATGTGAAAGTGTATATATGTAATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
202635 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
*
202682 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
202729 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* *
202776 ATGTGATGAATATGAAAGTGTATATATGTGAT-AGGCCTAATAGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
*
202822 ATGTGATGAATGTGAAAGTGTATATGTGTGATAAGG-CTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
202868 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAAT-GCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
*
202914 ATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
*
202961 ATGTGATGAATGTGAAAGTGTATATATGT-AAAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* *
203007 ATGTGATGAATGTGAAAGTGTATATATGTCATAAGGCCTAATGGCTG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
*
203054 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
203101 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* *
203148 ATGTGAATGAATGTTAAAGTG--TATATGTGATAAGGCCTAATAGCCG
1 ATGTG-ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
*
203194 ATGTGATGAATGTGAAAGTGTATATGTGTGATAAGG-CTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
203240 ATGTGATGAATGTGAAAGTGTATATATGT-ATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
203286 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * * *
203333 AT-TGATGAATGTGAAAGTGTATATATGTGA-CAGGCCGAGTGGCCA
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * * *
203378 ACGTGATGGATGTGAAAGTGCATAAAT-TGATAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAG
203412 TCCCGAAGGG
Statistics
Matches: 994, Mismatches: 49, Indels: 31
0.93 0.05 0.03
Matches are distributed among these distances:
45 39 0.04
46 378 0.38
47 555 0.56
48 22 0.02
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.30
Consensus pattern (47 bp):
ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
Found at i:202637 original size:187 final size:188
Alignment explanation
Indices: 202307--203411 Score: 1797
Period size: 187 Copynumber: 5.9 Consensus size: 188
202297 TTAGGATTCT
* * * * *
202307 ATGTGATGGATGTGAACA-TGCATATATGAGATAACGCCTAATGGCCGATGTGATGAATGTGAAA
1 ATGTGATGAATGTGAA-AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAA
* * * *
202371 GTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGCATGTGAAAGTATATATGTGTGATAAG
65 GTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
*
202436 GCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCG
130 GCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
*
202495 ATGTGATGAATGTGAAAGTGTATATGTTGTGATAA-GCCTAATAGCCGATGTGATGAATGTGAAA
1 ATGTGATGAATGTGAAAGTGTATAT-ATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAA
* *
202559 GTGTATATATGT-ATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTAATAAG
65 GTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
202623 GCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
130 GCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
202682 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAG
*
202747 TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATATGAAAGTGTATATATGTGAT-AGG
66 TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGG
* *
202811 CCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGG-CTAATGGCCG
131 CCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
202868 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAAT-GCCGATGTGATGAATGTGAAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAG
* *
202932 TGTATATGTGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGT-AAAAGG
66 TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGG
* *
202996 CCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTCATAAGGCCTAATGGCTG
131 CCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
203054 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAG
*
203119 TGTATATATGTGATAAGGCCTAATGGCCGATGTGAATGAATGTTAAAGTG--TATATGTGATAAG
66 TGTATATATGTGATAAGGCCTAATGGCCGATGTG-ATGAATGTGAAAGTGTATATATGTGATAAG
* *
203182 GCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGG-CTAATGGCCG
130 GCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
*
203240 ATGTGATGAATGTGAAAGTGTATATATGT-ATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAG
*
203304 TGTATATATGTGATAAGGCCTAATGGCCGAT-TGATGAATGTGAAAGTGTATATATGTGA-CAGG
66 TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGG
* * * * * * *
203367 CCGAGTGGCCAACGTGATGGATGTGAAAGTGCATAAAT-TGATAAG
131 CCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
203412 TCCCGAAGGG
Statistics
Matches: 864, Mismatches: 42, Indels: 27
0.93 0.05 0.03
Matches are distributed among these distances:
183 21 0.02
184 35 0.04
185 199 0.23
186 156 0.18
187 325 0.38
188 121 0.14
189 7 0.01
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.30
Consensus pattern (188 bp):
ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAG
TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGG
CCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
Found at i:203059 original size:372 final size:374
Alignment explanation
Indices: 202307--203397 Score: 1831
Period size: 372 Copynumber: 2.9 Consensus size: 374
202297 TTAGGATTCT
* * * * *
202307 ATGTGATGGATGTGAACA-TGCATATATGAGATAACGCCTAATGGCCGATGTGATGAATGTGAAA
1 ATGTGATGAATGTGAA-AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAA
* * * *
202371 GTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGCATGTGAAAGTATATATGTGTGATAAG
65 GTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
* * *
202436 GCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGA
130 GCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGG-CTAATGGCCGATGTGA
*
202501 TGAATGTGAAAGTGTATATGTTGTGATAA-GCCTAATAGCCGATGTGATGAATGTGAAAGTGTAT
194 TGAATGTGAAAGTGTATAT-ATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTAT
*
202565 ATATGT-ATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTAATAAGGCCTAA
258 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTAA-AAGGCCTAA
*
202629 TGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
322 TGGCCGATGTGATGAATGTGAAAGTGTATATATGTCATAAGGCCTAATGGCCG
202682 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAG
*
202747 TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATATGAAAGTGTATATATGTGAT-AGG
66 TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGG
202811 CCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCTAATGGCCGATGTGATG
131 CCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCTAATGGCCGATGTGATG
*
202876 AATGTGAAAGTGTATATATGTGATAAGGCCTAAT-GCCGATGTGATGAATGTGAAAGTGTATATG
196 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATA
202940 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTAAAAGGCCTAATGGC
261 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTAAAAGGCCTAATGGC
*
203005 CGATGTGATGAATGTGAAAGTGTATATATGTCATAAGGCCTAATGGCTG
326 CGATGTGATGAATGTGAAAGTGTATATATGTCATAAGGCCTAATGGCCG
203054 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAG
*
203119 TGTATATATGTGATAAGGCCTAATGGCCGATGTGAATGAATGTTAAAGTG--TATATGTGATAAG
66 TGTATATATGTGATAAGGCCTAATGGCCGATGTG-ATGAATGTGAAAGTGTATATATGTGATAAG
203182 GCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCTAATGGCCGATGTGAT
130 GCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCTAATGGCCGATGTGAT
*
203247 GAATGTGAAAGTGTATATATGT-ATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
195 GAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATAT
* * * *
203311 ATGTGATAAGGCCTAATGGCCGAT-TGATGAATGTGAAAGTGTATATATGTGACAGGCCGAGTGG
260 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTAAAAGGCCTAATGG
* * *
203375 CCAACGTGATGGATGTGAAAGTG
325 CCGATGTGATGAATGTGAAAGTG
203398 CATAAATTGA
Statistics
Matches: 682, Mismatches: 28, Indels: 16
0.94 0.04 0.02
Matches are distributed among these distances:
371 78 0.11
372 340 0.50
373 101 0.15
374 49 0.07
375 114 0.17
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.30
Consensus pattern (374 bp):
ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAG
TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGG
CCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCTAATGGCCGATGTGATG
AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATA
TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTAAAAGGCCTAATGGC
CGATGTGATGAATGTGAAAGTGTATATATGTCATAAGGCCTAATGGCCG
Found at i:203299 original size:55 final size:47
Alignment explanation
Indices: 203250--203411 Score: 224
Period size: 46 Copynumber: 3.5 Consensus size: 47
203240 ATGTGATGAA
203250 TGTGAAAGTGTATATATGT-ATAAGGCCTAATGGCCGATGTGATGAA
1 TGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
203296 TGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT-TGATGAA
1 TGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
* * * * * *
203342 TGTGAAAGTGTATATATGTGA-CAGGCCGAGTGGCCAACGTGATGGA
1 TGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
* *
203388 TGTGAAAGTGCATAAAT-TGATAAG
1 TGTGAAAGTGTATATATGTGATAAG
203412 TCCCGAAGGG
Statistics
Matches: 104, Mismatches: 9, Indels: 6
0.87 0.08 0.05
Matches are distributed among these distances:
45 15 0.14
46 70 0.67
47 19 0.18
ACGTcount: A:0.33, C:0.09, G:0.30, T:0.28
Consensus pattern (47 bp):
TGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
Found at i:203586 original size:36 final size:38
Alignment explanation
Indices: 203529--203607 Score: 117
Period size: 37 Copynumber: 2.1 Consensus size: 38
203519 CCGAGCTCTA
* *
203529 AAGACCGCGATGACTACGTGTGG-GATTTTGTCCGGGT
1 AAGACCGCGATAACTACGTGTGGAGATTATGTCCGGGT
*
203566 AAGACC-CGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCGCGATAACTACGTGTGGAGATTATGTCCGGGT
203603 AAGAC
1 AAGAC
203608 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
36 14 0.37
37 24 0.63
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (38 bp):
AAGACCGCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:205598 original size:38 final size:38
Alignment explanation
Indices: 205534--205608 Score: 107
Period size: 38 Copynumber: 2.0 Consensus size: 38
205524 GATCCGAGTT
*
205534 TAAAGACCCGCTGACTATATGAAGAGATTATGTCCGGG
1 TAAAGACCCGATGACTATATGAAGAGATTATGTCCGGG
* *
205572 TAAAGACCCGATGGCTATGT-ACAGAGATTATGTCCGG
1 TAAAGACCCGATGACTATATGA-AGAGATTATGTCCGG
205609 ATTAAAATTC
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
37 1 0.03
38 32 0.97
ACGTcount: A:0.31, C:0.19, G:0.27, T:0.24
Consensus pattern (38 bp):
TAAAGACCCGATGACTATATGAAGAGATTATGTCCGGG
Found at i:205739 original size:39 final size:40
Alignment explanation
Indices: 205661--205961 Score: 392
Period size: 39 Copynumber: 7.8 Consensus size: 40
205651 AGGGTCTCGA
*
205661 TGATG-ATCCGGGCTAAG-TCCGAAGAGCA-TCATGCTAG
1 TGATGTATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAG
*
205698 TGATGT-TCCGGGCTAAGTTCCGAAGAGCATTCATGCTAG
1 TGATGTATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAG
205737 TGATGTA-CCGGGCT-AG-TCCGAAGAGCATTCGTGCTAG
1 TGATGTATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAG
*
205774 TGATGTATCCGGGCTAAGTCCCG-AGAGCATTCGTGCTAG
1 TGATGTATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAG
205813 TGATGTATCCGGGCTAAGTCTCCGAAGAGCATTC-TGCTAG
1 TGATGTATCCGGGCTAAGT-TCCGAAGAGCATTCGTGCTAG
205853 TGATGTATCC-GGCT-AGTTCCGAAGAGCATTCGTGCTAG
1 TGATGTATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAG
* * *** *
205891 TGATATATCCGTGCTAAACCCCCGAAGAGCATTCGTGCTGG
1 TGATGTATCCGGGCT-AAGTTCCGAAGAGCATTCGTGCTAG
* * *
205932 TGTTATATCCGGGCT-AGGTCCGAAGAGCAT
1 TGATGTATCCGGGCTAAGTTCCGAAGAGCAT
205962 CATGCTGTGA
Statistics
Matches: 237, Mismatches: 14, Indels: 24
0.86 0.05 0.09
Matches are distributed among these distances:
37 57 0.24
38 38 0.16
39 78 0.33
40 22 0.09
41 42 0.18
ACGTcount: A:0.23, C:0.22, G:0.29, T:0.26
Consensus pattern (40 bp):
TGATGTATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAG
Found at i:205887 original size:117 final size:117
Alignment explanation
Indices: 205661--205971 Score: 435
Period size: 117 Copynumber: 2.7 Consensus size: 117
205651 AGGGTCTCGA
*
205661 TGATG-ATCCGGGCTAAGT-CCGAAGAGCA-TCATGCTAGTGATGT-TCCGGGCTAAGTTCCGAA
1 TGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTTCCGAA
205722 GAGCATTCATGCTAGTGATGTACCGGGCTAGTCCGAAGAGCATTCGTGCTAG
66 GAGCATTCATGCTAGTGATGTACCGGGCTAGTCCGAAGAGCATTCGTGCTAG
205774 TGATGTATCCGGGCTAAGTCCCG-AGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCTCCGA
1 TGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGT-TCCGA
205838 AGAGCATTC-TGCTAGTGATGTATCC-GGCTAGTTCCGAAGAGCATTCGTGCTAG
65 AGAGCATTCATGCTAGTGATGTA-CCGGGCTAG-TCCGAAGAGCATTCGTGCTAG
* * ** * * * *
205891 TGATATATCCGTGCTAAACCCCCGAAGAGCATTCGTGCTGGTGTTATATCCGGGCT-AGGTCCGA
1 TGATGTATCCGGGCT-AAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTTCCGA
205955 AGAGCA-TCATGCT-GTGA
65 AGAGCATTCATGCTAGTGA
205972 CGTGTATTCG
Statistics
Matches: 179, Mismatches: 9, Indels: 17
0.87 0.04 0.08
Matches are distributed among these distances:
113 5 0.03
114 19 0.11
115 17 0.09
116 37 0.21
117 65 0.36
118 8 0.04
119 28 0.16
ACGTcount: A:0.23, C:0.22, G:0.29, T:0.26
Consensus pattern (117 bp):
TGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTTCCGAA
GAGCATTCATGCTAGTGATGTACCGGGCTAGTCCGAAGAGCATTCGTGCTAG
Found at i:209417 original size:49 final size:47
Alignment explanation
Indices: 209346--209890 Score: 762
Period size: 47 Copynumber: 11.5 Consensus size: 47
209336 TGAATAAATT
*
209346 TGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATG
1 TGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATG
* *
209393 TGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATG
1 TGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATG
* *
209442 TGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATG
1 TGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATG
209491 TGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATG
1 TGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATG
209538 TGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATGAATG
1 TGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATG
* *
209587 TGAACA-TGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATG
1 TGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATG
* *
209634 TGAACA-TGCATATATGAGATAAGGCCGAATGGCCAATGTGATGAATG
1 TGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATG
* * *
209681 TGAACA-TGTGTATGTGTGATAAGGCCGAACGGCCAATGTGATGAATG
1 TGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATG
* *
209728 TGAACA-TGTGTATGTGTGATAAGGCCGAACT-GCCAATGTGATGAATG
1 TGAA-AGTGTATATATGTGATAAGGCCGAA-TGGCCAATGTGATGAATG
* *
209775 TGAACA-TGCATATATGAGATAAGGCCGAATGGCCAATGTGATGAATG
1 TGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATG
*
209822 TGAAAGTGTATATATGTGATAAGG-CGAATGGCCAATGTGATGGATG
1 TGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATG
* *
209868 TGGAAGTGTATAAATGTGATAAG
1 TGAAAGTGTATATATGTGATAAG
209891 TCCCGAAGGG
Statistics
Matches: 466, Mismatches: 24, Indels: 17
0.92 0.05 0.03
Matches are distributed among these distances:
46 44 0.09
47 281 0.60
49 140 0.30
50 1 0.00
ACGTcount: A:0.33, C:0.10, G:0.30, T:0.28
Consensus pattern (47 bp):
TGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATG
Found at i:209757 original size:25 final size:25
Alignment explanation
Indices: 209682--209757 Score: 63
Period size: 25 Copynumber: 3.2 Consensus size: 25
209672 TGATGAATGT
209682 GAACATGTGTATGTGTGATAAGGCC
1 GAACATGTGTATGTGTGATAAGGCC
* * * *
209707 GAAC--G-GCCA-ATGTGATGAATG-T
1 GAACATGTG-TATGTGTGAT-AAGGCC
209729 GAACATGTGTATGTGTGATAAGGCC
1 GAACATGTGTATGTGTGATAAGGCC
209754 GAAC
1 GAAC
209758 TGCCAATGTG
Statistics
Matches: 36, Mismatches: 8, Indels: 14
0.62 0.14 0.24
Matches are distributed among these distances:
22 11 0.31
23 5 0.14
24 5 0.14
25 15 0.42
ACGTcount: A:0.30, C:0.13, G:0.32, T:0.25
Consensus pattern (25 bp):
GAACATGTGTATGTGTGATAAGGCC
Found at i:213435 original size:39 final size:39
Alignment explanation
Indices: 213381--213506 Score: 198
Period size: 39 Copynumber: 3.2 Consensus size: 39
213371 TTCAGTGATG
213381 TATATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAAT
1 TATATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAAT
*
213420 TATATCCGGACTTAAGGTCCACAGGCTATGTGCTGGAAT
1 TATATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAAT
* * * *
213459 TATAACCGGACTTAAGGTCAGCAGGCTACGTGCTGGAAA
1 TATATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAAT
*
213498 TATGTCCGG
1 TATATCCGG
213507 GCTAAAGTCC
Statistics
Matches: 79, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
39 79 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (39 bp):
TATATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAAT
Found at i:213483 original size:78 final size:78
Alignment explanation
Indices: 213381--213524 Score: 209
Period size: 78 Copynumber: 1.8 Consensus size: 78
213371 TTCAGTGATG
* * * * *
213381 TATATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAATTATATCCGGACTTAAGGT-CCACAGG
1 TATAACCGGACTTAAGGTCAGCAGGCTACGTGCTGGAAATATATCCGGAC-TAAAGTCCCACAGG
213445 CTATGTGCTGGAAT
65 CTATGTGCTGGAAT
* *
213459 TATAACCGGACTTAAGGTCAGCAGGCTACGTGCTGGAAATATGTCCGGGCTAAAGTCCCACAGGC
1 TATAACCGGACTTAAGGTCAGCAGGCTACGTGCTGGAAATATATCCGGACTAAAGTCCCACAGGC
213524 T
66 T
213525 TCGAGCTGGT
Statistics
Matches: 58, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
77 5 0.09
78 53 0.91
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (78 bp):
TATAACCGGACTTAAGGTCAGCAGGCTACGTGCTGGAAATATATCCGGACTAAAGTCCCACAGGC
TATGTGCTGGAAT
Found at i:213523 original size:39 final size:39
Alignment explanation
Indices: 213381--213540 Score: 189
Period size: 39 Copynumber: 4.1 Consensus size: 39
213371 TTCAGTGATG
* *
213381 TATATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAAT
1 TATATCCGGACTTAAGGTCCACAGGCTACGTGCTGGAAT
*
213420 TATATCCGGACTTAAGGTCCACAGGCTATGTGCTGGAAT
1 TATATCCGGACTTAAGGTCCACAGGCTACGTGCTGGAAT
* *
213459 TATAACCGGACTTAAGGT-CAGCAGGCTACGTGCTGGAAA
1 TATATCCGGACTTAAGGTCCA-CAGGCTACGTGCTGGAAT
* * * * * *
213498 TATGTCCGGGC-TAAAGTCCCACAGGCTTCGAGCTGGTAT
1 TATATCCGGACTTAAGGT-CCACAGGCTACGTGCTGGAAT
213537 TATA
1 TATA
213541 CCGAGTTTAA
Statistics
Matches: 105, Mismatches: 13, Indels: 6
0.85 0.10 0.05
Matches are distributed among these distances:
38 7 0.07
39 96 0.91
40 2 0.02
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (39 bp):
TATATCCGGACTTAAGGTCCACAGGCTACGTGCTGGAAT
Found at i:218742 original size:14 final size:15
Alignment explanation
Indices: 218718--218747 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
218708 GAATATTAAA
218718 ACAATAATTAAGAAC
1 ACAATAATTAAGAAC
218733 ACAA-AATTAAGAAC
1 ACAATAATTAAGAAC
218747 A
1 A
218748 AGTCAAATAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 11 0.73
15 4 0.27
ACGTcount: A:0.63, C:0.13, G:0.07, T:0.17
Consensus pattern (15 bp):
ACAATAATTAAGAAC
Found at i:222518 original size:40 final size:39
Alignment explanation
Indices: 222418--222520 Score: 100
Period size: 40 Copynumber: 2.6 Consensus size: 39
222408 CATTGCACAC
* *
222418 CAACTCCATCCAACCCAACACACC-ATGTGGGGATAAAAT
1 CAAC-CCATCCAACCCTACACACCAATATGGGGATAAAAT
* * ** * * *
222457 CGACCCACCCATTCATGCACACCAAATATGGGGATAATAT
1 CAACCCATCCAACCCTACACACC-AATATGGGGATAAAAT
222497 CAACCCATCCAACCCTACACACCA
1 CAACCCATCCAACCCTACACACCA
222521 TAAGGTATCA
Statistics
Matches: 47, Mismatches: 15, Indels: 4
0.71 0.23 0.06
Matches are distributed among these distances:
38 13 0.28
39 4 0.09
40 30 0.64
ACGTcount: A:0.37, C:0.37, G:0.11, T:0.16
Consensus pattern (39 bp):
CAACCCATCCAACCCTACACACCAATATGGGGATAAAAT
Found at i:222910 original size:17 final size:17
Alignment explanation
Indices: 222888--222933 Score: 92
Period size: 17 Copynumber: 2.7 Consensus size: 17
222878 TGCCCCTGTG
222888 GGCCCACACGGCAATGT
1 GGCCCACACGGCAATGT
222905 GGCCCACACGGCAATGT
1 GGCCCACACGGCAATGT
222922 GGCCCACACGGC
1 GGCCCACACGGC
222934 CCAAATCAGC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 29 1.00
ACGTcount: A:0.22, C:0.39, G:0.30, T:0.09
Consensus pattern (17 bp):
GGCCCACACGGCAATGT
Found at i:223032 original size:17 final size:18
Alignment explanation
Indices: 222998--223038 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
222988 CTGTGTGGTT
222998 CACCCGTATGGTCCCACA
1 CACCCGTATGGTCCCACA
*
223016 CACCCGTGTGG-CCCACA
1 CACCCGTATGGTCCCACA
223033 CGACCC
1 C-ACCC
223039 AATTACCACA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 7 0.33
18 14 0.67
ACGTcount: A:0.20, C:0.49, G:0.20, T:0.12
Consensus pattern (18 bp):
CACCCGTATGGTCCCACA
Found at i:225381 original size:4 final size:4
Alignment explanation
Indices: 225372--225642 Score: 542
Period size: 4 Copynumber: 67.8 Consensus size: 4
225362 TTACTACTAA
225372 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
225420 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
225468 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
225516 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
225564 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
225612 TATG TATG TATG TATG TATG TATG TATG TAT
1 TATG TATG TATG TATG TATG TATG TATG TAT
225643 TTTTTTTCAA
Statistics
Matches: 267, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 267 1.00
ACGTcount: A:0.25, C:0.00, G:0.25, T:0.50
Consensus pattern (4 bp):
TATG
Found at i:240643 original size:308 final size:308
Alignment explanation
Indices: 240085--240703 Score: 1238
Period size: 308 Copynumber: 2.0 Consensus size: 308
240075 ACACAATATA
240085 GAATTATTTTGCTTCCCCTGTTTCTTTTATGTGAAAATAGACTCATTGAGATTTACTTTCATATA
1 GAATTATTTTGCTTCCCCTGTTTCTTTTATGTGAAAATAGACTCATTGAGATTTACTTTCATATA
240150 TCATTCGCATTTTTATTCAACTTCCACGATTTTTGGTAAATTTTTAAAATCACACAACTGCTACT
66 TCATTCGCATTTTTATTCAACTTCCACGATTTTTGGTAAATTTTTAAAATCACACAACTGCTACT
240215 GTCCAACACTGCTTTACTACTAAAGTTCACTTTTACACAATTCACTTAATCCATTCCATTTTACC
131 GTCCAACACTGCTTTACTACTAAAGTTCACTTTTACACAATTCACTTAATCCATTCCATTTTACC
240280 GAGGTTCGCTCAAATATCGAGCATATTGCTCATAAATTCAAATAAACATATACTTGCACTTGTTC
196 GAGGTTCGCTCAAATATCGAGCATATTGCTCATAAATTCAAATAAACATATACTTGCACTTGTTC
240345 ATCACATAATCACTTTCACATGTATTTTCATTTAATCGATTTCCCGTT
261 ATCACATAATCACTTTCACATGTATTTTCATTTAATCGATTTCCCGTT
240393 GAATTATTTTGCTTCCCCTGTTTCTTTTATGTGAAAATAGACTCATTGAGATTTACTTTCATATA
1 GAATTATTTTGCTTCCCCTGTTTCTTTTATGTGAAAATAGACTCATTGAGATTTACTTTCATATA
240458 TCATTCGCATTTTTATTCAACTTCCACGATTTTTGGTAAATTTTTAAAATCACACAACTGCTACT
66 TCATTCGCATTTTTATTCAACTTCCACGATTTTTGGTAAATTTTTAAAATCACACAACTGCTACT
240523 GTCCAACACTGCTTTACTACTAAAGTTCACTTTTACACAATTCACTTAATCCATTCCATTTTACC
131 GTCCAACACTGCTTTACTACTAAAGTTCACTTTTACACAATTCACTTAATCCATTCCATTTTACC
240588 GAGGTTCGCTCAAATATCGAGCATATTGCTCATAAATTCAAATAAACATATACTTGCACTTGTTC
196 GAGGTTCGCTCAAATATCGAGCATATTGCTCATAAATTCAAATAAACATATACTTGCACTTGTTC
240653 ATCACATAATCACTTTCACATGTATTTTCATTTAATCGATTTCCCGTT
261 ATCACATAATCACTTTCACATGTATTTTCATTTAATCGATTTCCCGTT
240701 GAA
1 GAA
240704 CTCATTGGAA
Statistics
Matches: 311, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
308 311 1.00
ACGTcount: A:0.29, C:0.22, G:0.09, T:0.40
Consensus pattern (308 bp):
GAATTATTTTGCTTCCCCTGTTTCTTTTATGTGAAAATAGACTCATTGAGATTTACTTTCATATA
TCATTCGCATTTTTATTCAACTTCCACGATTTTTGGTAAATTTTTAAAATCACACAACTGCTACT
GTCCAACACTGCTTTACTACTAAAGTTCACTTTTACACAATTCACTTAATCCATTCCATTTTACC
GAGGTTCGCTCAAATATCGAGCATATTGCTCATAAATTCAAATAAACATATACTTGCACTTGTTC
ATCACATAATCACTTTCACATGTATTTTCATTTAATCGATTTCCCGTT
Found at i:240844 original size:49 final size:49
Alignment explanation
Indices: 240785--241116 Score: 394
Period size: 49 Copynumber: 6.7 Consensus size: 49
240775 CTGGTATGCA
*
240785 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCTGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCAATTATCTGGTACACG
* * ** *
240834 TCGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGCGACC-AATTATCTGGTACACG
* * * * * *
240884 TAGTAGCCTGCACTTAGTACTACAAACGTGATCGAAGTTATCAGGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACACGCGA-CCAA-TTATCTGGTACACG
* * **
240935 TAGTAGCCTGCACTCAGTACTACACATGCGACCAACAATCTGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCAATTATCTGGTACACG
* * * * *
240984 TAGTAGCCTGCACTTAGTACTACACACGTGATCATAGTTTTCGGGTACACA
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCA-A-TTATCTGGTACACG
* * *
241035 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACATG
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCAATTATCTGGTACACG
*
241084 TAGTAGCCTGCACTTAGTACTACACACGTGACC
1 TAGTAGCCTGCACTTAGTACTACACACGCGACC
241117 TCACAATAGT
Statistics
Matches: 235, Mismatches: 43, Indels: 10
0.82 0.15 0.03
Matches are distributed among these distances:
49 110 0.47
50 49 0.21
51 76 0.32
ACGTcount: A:0.29, C:0.27, G:0.19, T:0.25
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACACGCGACCAATTATCTGGTACACG
Found at i:241005 original size:100 final size:99
Alignment explanation
Indices: 240785--241114 Score: 455
Period size: 100 Copynumber: 3.3 Consensus size: 99
240775 CTGGTATGCA
* * * * * *
240785 TAGTAGCCTGCACTTAGTACTACACATGCGACCAA-TTATCTGGTACACGTCGTAGCCTGCACTT
1 TAGTAGCCTGCACTTAGTACTACACACGTGATCAAGTTATCAGGTACACATAGTAGCCTGCACTT
* * * *
240849 AGTACTACACACGTGACCTAACCATCTGATACACG
66 AGTACTACACATGCGACC-AACAATCTGGTACACG
* *
240884 TAGTAGCCTGCACTTAGTACTACAAACGTGATCGAAGTTATCAGGTACGCATAGTAGCCTGCACT
1 TAGTAGCCTGCACTTAGTACTACACACGTGATC-AAGTTATCAGGTACACATAGTAGCCTGCACT
*
240949 CAGTACTACACATGCGACCAACAATCTGGTACACG
65 TAGTACTACACATGCGACCAACAATCTGGTACACG
* *
240984 TAGTAGCCTGCACTTAGTACTACACACGTGATCATAGTTTTCGGGTACACATAGTAGCCTGCACT
1 TAGTAGCCTGCACTTAGTACTACACACGTGATCA-AGTTATCAGGTACACATAGTAGCCTGCACT
** * *
241049 TAGTACTACACATGCGACCAATTATCCGGTACATG
65 TAGTACTACACATGCGACCAACAATCTGGTACACG
241084 TAGTAGCCTGCACTTAGTACTACACACGTGA
1 TAGTAGCCTGCACTTAGTACTACACACGTGA
241115 CCTCACAATA
Statistics
Matches: 206, Mismatches: 22, Indels: 5
0.88 0.09 0.02
Matches are distributed among these distances:
99 30 0.15
100 136 0.66
101 40 0.19
ACGTcount: A:0.29, C:0.27, G:0.19, T:0.25
Consensus pattern (99 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGATCAAGTTATCAGGTACACATAGTAGCCTGCACTT
AGTACTACACATGCGACCAACAATCTGGTACACG
Found at i:251831 original size:42 final size:41
Alignment explanation
Indices: 251784--251896 Score: 111
Period size: 44 Copynumber: 2.7 Consensus size: 41
251774 GATGTCACTA
*
251784 TCCCAGACAGGGTCTTACACGAAATCAAATTCGATACCGATG
1 TCCCAGACAGGGTCTTACACGAAATCAAA-TCGATACCAATG
* * * *
251826 TCCCAGACATGGACTTACACATAAACGTCAAATCGATGCCAATG
1 TCCCAGACAGGGTCTTACAC-GAAA--TCAAATCGATACCAATG
* *
251870 TCCTAGAC-GTGCTCTTACACGAAATCA
1 TCCCAGACAG-GGTCTTACACGAAATCA
251897 CATATCAGAA
Statistics
Matches: 57, Mismatches: 10, Indels: 9
0.75 0.13 0.12
Matches are distributed among these distances:
41 3 0.05
42 18 0.32
43 6 0.11
44 25 0.44
45 5 0.09
ACGTcount: A:0.34, C:0.27, G:0.17, T:0.22
Consensus pattern (41 bp):
TCCCAGACAGGGTCTTACACGAAATCAAATCGATACCAATG
Found at i:254443 original size:23 final size:23
Alignment explanation
Indices: 254417--254526 Score: 98
Period size: 23 Copynumber: 4.8 Consensus size: 23
254407 AGACTCACCA
254417 CAGCTCATTGGAGCTTACCAATT
1 CAGCTCATTGGAGCTTACCAATT
** * * *
254440 CAGCTCATAAGACCTTACTATTT
1 CAGCTCATTGGAGCTTACCAATT
* * * *
254463 TAGCTCATTGGAGGTAACCGATT
1 CAGCTCATTGGAGCTTACCAATT
* *
254486 CAGCTCGA-TAGAGCTTA-CTATT
1 CAGCTC-ATTGGAGCTTACCAATT
254508 CAGCTCATTGGAGCTTACC
1 CAGCTCATTGGAGCTTACC
254527 GTTTTAGCTA
Statistics
Matches: 64, Mismatches: 20, Indels: 6
0.71 0.22 0.07
Matches are distributed among these distances:
21 1 0.02
22 18 0.28
23 44 0.69
24 1 0.02
ACGTcount: A:0.26, C:0.25, G:0.18, T:0.31
Consensus pattern (23 bp):
CAGCTCATTGGAGCTTACCAATT
Found at i:254487 original size:46 final size:45
Alignment explanation
Indices: 254417--254522 Score: 142
Period size: 46 Copynumber: 2.3 Consensus size: 45
254407 AGACTCACCA
*
254417 CAGCTCATTGGAGCTTACCAATTCAGCTC-ATAAGACCTTACTATTT
1 CAGCTCATTGGAGCTAACCAATTCAGCTCGAT-AGACCTTACTA-TT
* * * *
254463 TAGCTCATTGGAGGTAACCGATTCAGCTCGATAGAGCTTACTATT
1 CAGCTCATTGGAGCTAACCAATTCAGCTCGATAGACCTTACTATT
254508 CAGCTCATTGGAGCT
1 CAGCTCATTGGAGCT
254523 TACCGTTTTA
Statistics
Matches: 52, Mismatches: 7, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
45 15 0.29
46 35 0.67
47 2 0.04
ACGTcount: A:0.26, C:0.24, G:0.19, T:0.31
Consensus pattern (45 bp):
CAGCTCATTGGAGCTAACCAATTCAGCTCGATAGACCTTACTATT
Found at i:260696 original size:6 final size:6
Alignment explanation
Indices: 260682--260714 Score: 57
Period size: 6 Copynumber: 5.5 Consensus size: 6
260672 GGAAATAACC
*
260682 AAAATT AAAAAT AAAAAT AAAAAT AAAAAT AAA
1 AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAA
260715 CTTTCTAAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 26 1.00
ACGTcount: A:0.82, C:0.00, G:0.00, T:0.18
Consensus pattern (6 bp):
AAAAAT
Found at i:270158 original size:27 final size:27
Alignment explanation
Indices: 270128--270186 Score: 68
Period size: 26 Copynumber: 2.2 Consensus size: 27
270118 CGTACTTTGG
*
270128 CTCATTTTCTCCA-TTTTTGGCACGTTT
1 CTCATTTCCT-CATTTTTTGGCACGTTT
* *
270155 CTCA-TTCCTTATTTTTTTGCACGTTT
1 CTCATTTCCTCATTTTTTGGCACGTTT
270181 CTCATT
1 CTCATT
270187 CCTTTCGCTC
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
25 1 0.04
26 21 0.78
27 5 0.19
ACGTcount: A:0.12, C:0.25, G:0.08, T:0.54
Consensus pattern (27 bp):
CTCATTTCCTCATTTTTTGGCACGTTT
Found at i:270177 original size:26 final size:26
Alignment explanation
Indices: 270141--270190 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
270131 ATTTTCTCCA
270141 TTTTTGGCACGTTTCTCATTCCTTAT
1 TTTTTGGCACGTTTCTCATTCCTTAT
*
270167 TTTTTTGCACGTTTCTCATTCCTT
1 TTTTTGGCACGTTTCTCATTCCTT
270191 TCGCTCTCCT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.10, C:0.24, G:0.10, T:0.56
Consensus pattern (26 bp):
TTTTTGGCACGTTTCTCATTCCTTAT
Found at i:272413 original size:18 final size:17
Alignment explanation
Indices: 272392--272425 Score: 59
Period size: 18 Copynumber: 1.9 Consensus size: 17
272382 TTGCATTTTC
272392 TTTATTTATTATTATTTA
1 TTTATTTATT-TTATTTA
272410 TTTATTTATTTTATTT
1 TTTATTTATTTTATTT
272426 CAGATTAATT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (17 bp):
TTTATTTATTTTATTTA
Found at i:274116 original size:20 final size:20
Alignment explanation
Indices: 274091--274132 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
274081 AGTCCTTTTA
274091 TTTTATTATCATTATTATTT
1 TTTTATTATCATTATTATTT
* * *
274111 TTTTATTTTTATTTTTATTT
1 TTTTATTATCATTATTATTT
274131 TT
1 TT
274133 ATTTTATTTA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.19, C:0.02, G:0.00, T:0.79
Consensus pattern (20 bp):
TTTTATTATCATTATTATTT
Found at i:274119 original size:6 final size:6
Alignment explanation
Indices: 274110--274141 Score: 57
Period size: 6 Copynumber: 5.5 Consensus size: 6
274100 CATTATTATT
274110 TTTTTA TTTTTA TTTTTA TTTTTA -TTTTA TTT
1 TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTT
274142 ATTTTTGAAG
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
5 5 0.20
6 20 0.80
ACGTcount: A:0.16, C:0.00, G:0.00, T:0.84
Consensus pattern (6 bp):
TTTTTA
Found at i:274122 original size:17 final size:17
Alignment explanation
Indices: 274088--274147 Score: 59
Period size: 17 Copynumber: 3.5 Consensus size: 17
274078 TTCAGTCCTT
* **
274088 TTATTTTATTATCATTA
1 TTATTTTTTTATTTTTA
274105 TTATTTTTTTATTTTTA
1 TTATTTTTTTATTTTTA
*
274122 TTTTTATTTTTA-TTTTA
1 TTATT-TTTTTATTTTTA
274139 TTTATTTTT
1 -TTATTTTT
274148 GAAGACTTAT
Statistics
Matches: 36, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
17 26 0.72
18 10 0.28
ACGTcount: A:0.20, C:0.02, G:0.00, T:0.78
Consensus pattern (17 bp):
TTATTTTTTTATTTTTA
Found at i:274122 original size:23 final size:24
Alignment explanation
Indices: 274086--274144 Score: 68
Period size: 23 Copynumber: 2.5 Consensus size: 24
274076 CTTTCAGTCC
274086 TTTTATTTTATTATCATTATTATTT-
1 TTTTA-TTTATTATCATTATT-TTTA
**
274111 TTTTATTT-TTATTTTTATTTTTA
1 TTTTATTTATTATCATTATTTTTA
274134 TTTTATTTATT
1 TTTTATTTATT
274145 TTTGAAGACT
Statistics
Matches: 30, Mismatches: 2, Indels: 5
0.81 0.05 0.14
Matches are distributed among these distances:
22 3 0.10
23 17 0.57
24 5 0.17
25 5 0.17
ACGTcount: A:0.20, C:0.02, G:0.00, T:0.78
Consensus pattern (24 bp):
TTTTATTTATTATCATTATTTTTA
Found at i:274125 original size:11 final size:11
Alignment explanation
Indices: 274102--274141 Score: 55
Period size: 11 Copynumber: 3.5 Consensus size: 11
274092 TTTATTATCA
274102 TTATTATTT-TT
1 TTATT-TTTATT
274113 TTATTTTTATTT
1 TTATTTTTA-TT
274125 TTATTTTTATT
1 TTATTTTTATT
274136 TTATTT
1 TTATTT
274142 ATTTTTGAAG
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
10 3 0.11
11 13 0.48
12 11 0.41
ACGTcount: A:0.17, C:0.00, G:0.00, T:0.82
Consensus pattern (11 bp):
TTATTTTTATT
Found at i:274134 original size:26 final size:26
Alignment explanation
Indices: 274086--274147 Score: 81
Period size: 26 Copynumber: 2.4 Consensus size: 26
274076 CTTTCAGTCC
274086 TTTTA-TTTTATTATCATTATTATTT
1 TTTTATTTTTATTATCATTATTATTT
* * *
274111 TTTTATTTTTATTTTTATTTTTATTT
1 TTTTATTTTTATTATCATTATTATTT
274137 TATTTATTTTT
1 T-TTTATTTTT
274148 GAAGACTTAT
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
25 5 0.16
26 18 0.56
27 9 0.28
ACGTcount: A:0.19, C:0.02, G:0.00, T:0.79
Consensus pattern (26 bp):
TTTTATTTTTATTATCATTATTATTT
Found at i:288333 original size:23 final size:23
Alignment explanation
Indices: 288303--288368 Score: 78
Period size: 23 Copynumber: 2.9 Consensus size: 23
288293 TATCTTATTG
288303 GAGCTTACTGATTTAGCTCGTAA
1 GAGCTTACTGATTTAGCTCGTAA
* * **
288326 GAGCTTACTAATTTAGCTCATTG
1 GAGCTTACTGATTTAGCTCGTAA
* *
288349 GAGCTTACCGATTCAGCTCG
1 GAGCTTACTGATTTAGCTCG
288369 ATAGAATTTA
Statistics
Matches: 35, Mismatches: 8, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
23 35 1.00
ACGTcount: A:0.24, C:0.21, G:0.21, T:0.33
Consensus pattern (23 bp):
GAGCTTACTGATTTAGCTCGTAA
Found at i:288403 original size:45 final size:45
Alignment explanation
Indices: 288299--288427 Score: 134
Period size: 45 Copynumber: 2.8 Consensus size: 45
288289 ACCATATCTT
* * * * * *
288299 ATTGGAGCTTACTGATTTAGCTCG-TAAGAGCTTACTAATTTAGCTC
1 ATTGGAGCATACCGATTCAGCTCGAT-AGAACTTACT-GTTCAGCTC
* *
288345 ATTGGAGCTTACCGATTCAGCTCGATAGAATTTACTGTTCAGCTC
1 ATTGGAGCATACCGATTCAGCTCGATAGAACTTACTGTTCAGCTC
* * *
288390 ATTGGAGCATACCGTTTCAGCTCGTTAGAGCTTACTGT
1 ATTGGAGCATACCGATTCAGCTCGATAGAACTTACTGT
288428 CCATCAACTC
Statistics
Matches: 71, Mismatches: 11, Indels: 3
0.84 0.13 0.04
Matches are distributed among these distances:
45 40 0.56
46 30 0.42
47 1 0.01
ACGTcount: A:0.24, C:0.20, G:0.21, T:0.35
Consensus pattern (45 bp):
ATTGGAGCATACCGATTCAGCTCGATAGAACTTACTGTTCAGCTC
Found at i:291338 original size:76 final size:76
Alignment explanation
Indices: 291212--291363 Score: 304
Period size: 76 Copynumber: 2.0 Consensus size: 76
291202 ACCCTAGCAA
291212 GCTTATTTGCTTTTCTTTTTCTTTGTATTTTCACAAAGATGAGTGAAAATAAAGCTTGAATTTGA
1 GCTTATTTGCTTTTCTTTTTCTTTGTATTTTCACAAAGATGAGTGAAAATAAAGCTTGAATTTGA
291277 TTATGTTTTAT
66 TTATGTTTTAT
291288 GCTTATTTGCTTTTCTTTTTCTTTGTATTTTCACAAAGATGAGTGAAAATAAAGCTTGAATTTGA
1 GCTTATTTGCTTTTCTTTTTCTTTGTATTTTCACAAAGATGAGTGAAAATAAAGCTTGAATTTGA
291353 TTATGTTTTAT
66 TTATGTTTTAT
291364 TATAAACATT
Statistics
Matches: 76, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
76 76 1.00
ACGTcount: A:0.26, C:0.09, G:0.14, T:0.50
Consensus pattern (76 bp):
GCTTATTTGCTTTTCTTTTTCTTTGTATTTTCACAAAGATGAGTGAAAATAAAGCTTGAATTTGA
TTATGTTTTAT
Found at i:293096 original size:23 final size:23
Alignment explanation
Indices: 293070--293180 Score: 116
Period size: 23 Copynumber: 4.9 Consensus size: 23
293060 AGACTCACCA
*
293070 CAGCTCATTGGAGCTTACCAATT
1 CAGCTCATTGGAGCTTACCGATT
** * *
293093 CAGCTCATAAGAGCTTACTGTTT
1 CAGCTCATTGGAGCTTACCGATT
* *
293116 TAGCTCATTGGAGCTAACCGATT
1 CAGCTCATTGGAGCTTACCGATT
* * *
293139 CAGCTCAATAGAGCTTACTG-TT
1 CAGCTCATTGGAGCTTACCGATT
*
293161 CAGCTTATTGGAGCTTACCG
1 CAGCTCATTGGAGCTTACCG
293181 TTTTAGCTAG
Statistics
Matches: 68, Mismatches: 20, Indels: 1
0.76 0.22 0.01
Matches are distributed among these distances:
22 18 0.26
23 50 0.74
ACGTcount: A:0.25, C:0.23, G:0.20, T:0.32
Consensus pattern (23 bp):
CAGCTCATTGGAGCTTACCGATT
Found at i:293140 original size:46 final size:45
Alignment explanation
Indices: 293070--293180 Score: 161
Period size: 46 Copynumber: 2.4 Consensus size: 45
293060 AGACTCACCA
*
293070 CAGCTCATTGGAGCTTACCAATTCAGCTC-ATAAGAGCTTACTGTTT
1 CAGCTCATTGGAGCTTACCGATTCAGCTCAAT-AGAGCTTACTG-TT
* *
293116 TAGCTCATTGGAGCTAACCGATTCAGCTCAATAGAGCTTACTGTT
1 CAGCTCATTGGAGCTTACCGATTCAGCTCAATAGAGCTTACTGTT
*
293161 CAGCTTATTGGAGCTTACCG
1 CAGCTCATTGGAGCTTACCG
293181 TTTTAGCTAG
Statistics
Matches: 58, Mismatches: 6, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
45 19 0.33
46 37 0.64
47 2 0.03
ACGTcount: A:0.25, C:0.23, G:0.20, T:0.32
Consensus pattern (45 bp):
CAGCTCATTGGAGCTTACCGATTCAGCTCAATAGAGCTTACTGTT
Found at i:304558 original size:14 final size:14
Alignment explanation
Indices: 304539--304568 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
304529 ATCGAAGCAC
304539 GACTCACACAGGTA
1 GACTCACACAGGTA
*
304553 GACTCACACGGGTA
1 GACTCACACAGGTA
304567 GA
1 GA
304569 ACACACGCCT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.33, C:0.27, G:0.27, T:0.13
Consensus pattern (14 bp):
GACTCACACAGGTA
Found at i:309706 original size:16 final size:17
Alignment explanation
Indices: 309681--309712 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
309671 ATTTAGTCCC
309681 AAATTCATACTTTTGCA
1 AAATTCATACTTTTGCA
309698 AAATT-ATACTTTTGC
1 AAATTCATACTTTTGC
309713 CCTTAGTATT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 10 0.67
17 5 0.33
ACGTcount: A:0.34, C:0.16, G:0.06, T:0.44
Consensus pattern (17 bp):
AAATTCATACTTTTGCA
Found at i:311547 original size:27 final size:27
Alignment explanation
Indices: 311512--311567 Score: 112
Period size: 27 Copynumber: 2.1 Consensus size: 27
311502 AGATTAAAAA
311512 GTAAGAATAAATCAAATTTGATTATGG
1 GTAAGAATAAATCAAATTTGATTATGG
311539 GTAAGAATAAATCAAATTTGATTATGG
1 GTAAGAATAAATCAAATTTGATTATGG
311566 GT
1 GT
311568 GATTAGTTCG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.43, C:0.04, G:0.20, T:0.34
Consensus pattern (27 bp):
GTAAGAATAAATCAAATTTGATTATGG
Found at i:314365 original size:14 final size:14
Alignment explanation
Indices: 314346--314375 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
314336 ATTTAACCAA
314346 ATATACATAAACTC
1 ATATACATAAACTC
*
314360 ATATACATAAATTC
1 ATATACATAAACTC
314374 AT
1 AT
314376 GCATCATTTC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.50, C:0.17, G:0.00, T:0.33
Consensus pattern (14 bp):
ATATACATAAACTC
Found at i:314848 original size:45 final size:44
Alignment explanation
Indices: 314704--314857 Score: 165
Period size: 45 Copynumber: 3.6 Consensus size: 44
314694 TCGTACAATC
* * *
314704 CCAACATCCTAGACGTGGTCTTACATGTAATCAC-ATATTGATG
1 CCAACATCCCAGACATGGTCTTACACGTAATCACAATATTGATG
* *
314747 CC-ACTATCCCAGACAAGGTCTTACACG-AATCA-AATA-CGATG
1 CCAAC-ATCCCAGACATGGTCTTACACGTAATCACAATATTGATG
* * **
314788 ACGATGTCCCAGACATGGTCTTACACGTAATCACATATATTGATG
1 CCAACATCCCAGACATGGTCTTACACGTAATCACA-ATATTGATG
*
314833 CCAACGTCCCAGACATGGTCTTACA
1 CCAACATCCCAGACATGGTCTTACA
314858 TGAGAACACA
Statistics
Matches: 91, Mismatches: 13, Indels: 12
0.78 0.11 0.10
Matches are distributed among these distances:
41 25 0.27
42 16 0.18
43 21 0.23
44 3 0.03
45 26 0.29
ACGTcount: A:0.32, C:0.27, G:0.16, T:0.25
Consensus pattern (44 bp):
CCAACATCCCAGACATGGTCTTACACGTAATCACAATATTGATG
Found at i:322380 original size:45 final size:44
Alignment explanation
Indices: 322238--322396 Score: 139
Period size: 45 Copynumber: 3.7 Consensus size: 44
322228 ATATCGTACA
* * * *
322238 ATGCCAACGTCCTAGACGTGGTCTTACATGTAATCAC-ATATCA
1 ATGCCAACGTCCCAGACATGGTCTTACACGTAATCACAATATCG
* * * *
322281 ATGCC-ACTATCTCATACAGGGTCTTACACG-AATCA-AATA-CG
1 ATGCCAAC-GTCCCAGACATGGTCTTACACGTAATCACAATATCG
*** *
322322 ATGATGATGTCCCAGACATGGTCTTACACGTAATCACATATATCG
1 ATGCCAACGTCCCAGACATGGTCTTACACGTAATCACA-ATATCG
* *
322367 ATGCCAACGTCCCAGACGTCGTCTTACACG
1 ATGCCAACGTCCCAGACATGGTCTTACACG
322397 AGAACACATA
Statistics
Matches: 88, Mismatches: 21, Indels: 12
0.73 0.17 0.10
Matches are distributed among these distances:
41 22 0.25
42 16 0.18
43 21 0.24
44 3 0.03
45 26 0.30
ACGTcount: A:0.30, C:0.27, G:0.17, T:0.26
Consensus pattern (44 bp):
ATGCCAACGTCCCAGACATGGTCTTACACGTAATCACAATATCG
Found at i:341926 original size:15 final size:16
Alignment explanation
Indices: 341896--341929 Score: 52
Period size: 15 Copynumber: 2.2 Consensus size: 16
341886 ACATGACAGA
341896 ATAACAAAATCAATAT
1 ATAACAAAATCAATAT
*
341912 ATAATAAAA-CAATAT
1 ATAACAAAATCAATAT
341927 ATA
1 ATA
341930 CATGAAATAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 9 0.53
16 8 0.47
ACGTcount: A:0.65, C:0.09, G:0.00, T:0.26
Consensus pattern (16 bp):
ATAACAAAATCAATAT
Done.