genome.fa.s534.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2757
Parameters: 2 7 7 80 10 50 1000
Length:  154201

Tables:   1   

This is table  1  of  1  ( 35 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43--119	41	2.0	39	82	10	95	29	20	25	23	1.99
11249--11275	13	2.1	13	100	0	54	14	37	33	14	1.88
12687--12883	40	5.1	40	80	8	180	25	28	20	24	1.99
12706--12835	38	3.3	39	86	5	174	26	28	20	24	1.99
20723--20926	40	5.1	40	80	7	227	26	26	21	24	1.99
20770--20920	79	1.9	80	83	6	200	27	25	20	25	1.99
26539--26563	13	1.9	13	100	0	50	16	32	36	16	1.90
36733--36760	14	2.0	14	100	0	56	50	7	7	35	1.57
39095--39327	55	4.4	53	77	10	228	36	17	24	21	1.94
39095--39302	55	3.8	53	80	7	240	36	16	25	22	1.94
39102--39302	108	1.8	110	88	4	309	35	16	25	22	1.95
49581--49624	24	1.9	23	86	9	63	20	31	2	45	1.64
51483--51549	32	2.1	32	100	0	134	38	11	17	31	1.87
64588--64617	12	2.5	12	94	0	51	30	6	6	56	1.51
74214--74277	18	3.6	18	69	12	60	39	18	1	40	1.60
74209--74278	35	2.0	35	100	0	140	40	20	2	37	1.67
74506--74539	16	2.1	16	94	0	59	32	17	23	26	1.97
74855--74886	16	1.9	17	93	6	57	37	9	0	53	1.34
83064--83172	42	2.6	42	76	5	114	33	23	14	28	1.94
97755--97976	67	3.4	64	79	9	241	31	14	28	24	1.95
103684--103857	50	3.5	49	85	1	204	25	17	27	29	1.97
103676--103872	50	3.9	50	78	6	193	26	17	26	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
105788--105827	18	2.2	18	86	8	55	15	45	27	12	1.82
123793--123822	14	2.1	14	100	0	60	56	20	10	13	1.65
128225--128312	33	2.7	33	91	3	133	23	28	20	27	1.99
128507--128593	27	3.2	27	81	0	93	36	21	20	20	1.95
128736--128925	27	7.0	27	88	1	217	24	22	20	33	1.97
128755--128925	81	2.1	81	90	2	263	23	23	20	32	1.98
128762--128922	54	3.0	54	91	1	252	23	23	20	32	1.98
130986--131170	40	4.7	40	82	6	207	24	27	22	25	2.00
130994--131170	79	2.2	80	81	7	200	24	27	23	25	2.00
137543--137568	13	2.0	13	100	0	52	23	0	0	76	0.78
146040--146090	22	2.4	22	81	12	61	68	1	19	9	1.27
151973--152008	11	3.2	11	92	4	54	83	0	0	16	0.65
153355--153406	27	1.9	27	84	7	70	13	28	1	55	1.49

Tables:   1

The End!