genome.fa.s535.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold3159
Parameters: 2 7 7 80 10 50 1000
Length:  142596

Tables:   1   

This is table  1  of  1  ( 44 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4577--4744	40	4.2	40	83	4	106	25	27	23	23	2.00
4600--4744	40	3.6	40	85	4	193	23	26	24	25	2.00
5932--6007	38	2.0	38	100	0	152	31	23	13	31	1.93
16133--16171	20	2.0	20	89	0	60	43	10	0	46	1.37
18858--18901	18	2.6	16	86	13	70	75	9	2	13	1.14
19584--19632	24	2.0	24	92	0	80	34	20	20	24	1.96
21665--21715	17	3.1	17	83	5	61	39	7	0	52	1.30
23544--23965	208	2.0	208	94	0	745	31	23	8	36	1.85
29107--29204	52	1.9	50	85	4	133	27	17	16	38	1.91
31040--31305	134	2.0	134	92	0	442	36	13	15	34	1.87
35667--35717	19	2.6	19	72	9	50	23	19	21	35	1.96
35724--35791	20	3.4	20	72	0	73	25	19	23	32	1.97
35629--35830	40	5.1	40	79	3	183	24	21	22	32	1.98
36706--36834	46	2.8	46	83	2	179	29	23	19	27	1.98
40510--40595	39	2.2	39	95	0	154	37	23	0	39	1.55
44700--44739	20	2.0	20	90	0	62	25	2	30	42	1.68
52019--52065	22	2.1	23	96	4	87	46	4	14	34	1.64
54288--54325	11	3.1	12	85	14	51	44	0	10	44	1.38
60535--60636	51	2.0	51	92	0	168	18	26	16	38	1.92
62094--62252	43	3.7	43	77	7	126	32	23	15	28	1.95
69729--69824	43	2.2	43	85	3	131	37	18	15	28	1.92
70540--70573	17	2.0	17	88	0	50	61	11	5	20	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74625--74679	26	2.2	24	81	15	60	21	21	7	49	1.74
74633--74704	26	2.7	27	91	6	119	20	22	5	51	1.68
76839--76912	29	2.6	29	86	4	96	27	16	31	25	1.96
84979--85052	29	2.6	29	86	4	96	27	16	31	25	1.96
87968--88086	51	2.3	51	100	0	238	36	19	1	42	1.61
88072--88110	12	3.2	12	92	0	69	30	20	0	48	1.50
89741--89794	21	2.6	21	93	0	90	18	24	18	38	1.93
92132--92169	13	3.0	13	92	3	60	42	15	28	13	1.85
103191--103234	23	1.9	23	81	9	54	31	6	11	50	1.65
107404--107446	16	2.8	15	75	6	50	41	0	18	39	1.51
110320--110424	27	3.9	26	82	9	122	17	24	21	36	1.95
110320--110429	54	2.0	54	84	6	143	17	24	20	37	1.94
130054--130168	19	6.2	19	86	10	166	37	9	16	36	1.81
130054--130167	36	3.2	34	89	8	149	37	9	16	35	1.82
130054--130168	55	2.1	55	87	9	162	37	9	16	36	1.81
135766--135810	16	2.9	15	84	15	56	86	0	11	2	0.65
135767--135810	23	1.9	23	90	0	70	86	0	11	2	0.66
136707--136889	44	4.1	44	72	8	174	31	18	23	27	1.97
136833--136999	88	1.9	87	82	6	212	33	16	20	29	1.95
136695--137014	132	2.4	132	87	1	433	33	16	21	28	1.96
136962--137540	174	3.3	175	90	2	909	33	19	19	27	1.96
137840--137865	3	8.7	3	100	0	52	69	0	0	30	0.89

Tables:   1

The End!