Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2587
Parameters: 2 7 7 80 10 50 1000
Length:  129897

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4325--4531
28
7.5
28
93
0
328
25
14
28
32
1.94
12507--12686
26
6.6
27
90
8
258
26
12
28
32
1.93
12507--12686
84
2.2
81
90
5
272
26
12
28
32
1.93
20697--20904
28
7.5
28
94
0
346
25
13
28
32
1.94
24974--25091
43
2.8
42
85
3
157
26
16
24
32
1.96
29205--29248
23
1.9
23
81
9
54
38
27
0
34
1.57
33195--33245
16
3.1
17
83
5
61
39
19
7
33
1.81
36083--36124
16
2.6
16
85
7
59
52
0
2
45
1.13
36799--36827
13
2.2
13
100
0
58
55
13
0
31
1.39
36797--36837
13
2.7
15
78
21
50
53
12
0
34
1.38
69860--69956
40
2.4
42
83
10
114
29
28
15
25
1.96
84843--84884
21
2.0
21
90
0
66
21
14
45
19
1.85
86550--86670
46
2.6
46
85
6
147
28
28
21
21
1.99
93781--93828
25
1.9
25
86
0
69
35
22
16
25
1.95
93962--94063
47
2.2
46
91
3
159
27
19
23
29
1.98
93962--94077
23
5.0
23
87
5
162
26
20
23
29
1.99
94269--94332
31
2.1
31
87
0
92
39
14
21
25
1.91
117215--117334
55
2.2
55
96
0
222
20
16
11
51
1.75
117843--118092
89
2.8
88
89
1
385
34
19
23
22
1.96
117850--118083
44
5.3
44
69
9
163
34
19
23
22
1.97
119990--120048
22
2.5
23
84
10
68
28
5
6
59
1.45
120420--120475
24
2.3
25
78
9
62
35
5
3
55
1.40
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
129730--129879
40
3.8
39
85
5
194
24
21
27
26
1.99
129729--129875
80
1.8
79
86
4
215
24
22
26
26
2.00

Tables:   1

The End!