genome.fa.s537.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold3367
Parameters: 2 7 7 80 10 50 1000
Length:  107606

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4284--4462	40	4.5	40	81	9	165	23	21	27	27	1.99
4284--4462	78	2.3	80	83	11	210	23	21	27	27	1.99
4347--4465	40	3.0	39	86	4	166	23	20	27	28	1.99
4363--4512	40	3.8	38	80	10	131	25	22	28	24	1.99
11740--11871	43	3.1	43	94	0	228	31	34	22	12	1.91
13055--13085	16	1.9	16	93	0	53	19	29	0	51	1.47
13722--13813	40	2.3	39	84	1	112	42	23	17	16	1.88
14933--14962	13	2.3	13	100	0	60	56	16	0	26	1.40
17958--17982	6	4.2	6	100	0	50	20	0	0	80	0.72
26180--26285	42	2.5	42	87	3	160	33	8	21	36	1.84
26180--26337	85	1.9	84	83	1	208	32	10	22	34	1.89
29070--29324	55	4.8	53	76	9	220	36	17	24	21	1.95
29077--29277	108	1.8	110	87	4	300	34	17	24	23	1.96
29393--29440	23	2.0	24	84	4	62	47	8	20	22	1.77
29516--29546	16	1.9	16	93	0	53	41	0	22	35	1.54
32511--32549	21	1.9	21	94	5	71	23	30	35	10	1.88
33812--33931	49	2.4	49	82	6	136	20	30	17	31	1.96
33931--34047	47	2.5	49	78	17	124	22	25	21	30	1.98
38385--38624	48	4.9	49	82	7	285	27	19	27	25	1.99
54428--54516	26	3.3	26	83	7	106	29	22	11	37	1.89
54438--54517	28	2.9	28	88	3	110	27	23	10	38	1.87
58065--58105	19	2.2	18	86	4	55	41	0	14	43	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58298--58342	22	2.0	22	95	0	81	48	17	11	22	1.78
65564--65657	47	2.0	47	95	0	170	30	12	21	35	1.91
74699--74728	15	2.0	15	100	0	60	66	0	6	26	1.16
77657--77728	36	2.0	35	83	2	90	38	0	9	51	1.35
94724--94908	40	4.7	40	82	7	209	24	22	27	25	2.00
94724--94908	79	2.3	81	82	7	227	24	22	27	25	2.00
94777--94931	79	2.0	79	83	7	199	26	21	26	25	1.99
98297--98406	45	2.4	45	83	3	132	22	12	28	36	1.91
98381--98507	52	2.6	48	84	9	154	19	16	29	33	1.94

Tables:   1

The End!