Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1067
Parameters: 2 7 7 80 10 50 1000
Length:  105572

Tables:   1   

This is table  1  of  1  ( 30 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1669--1712
14
2.9
14
90
10
61
81
0
0
18
0.68
1670--1713
20
2.2
20
87
0
61
84
0
0
15
0.63
1669--1715
15
3.1
15
87
3
67
78
0
0
21
0.75
2824--2868
18
2.5
18
77
0
54
66
0
20
13
1.24
4623--5808
608
1.9
621
80
15
1412
28
16
16
37
1.91
8407--8453
18
2.5
19
75
3
51
46
0
12
40
1.42
8809--8861
28
1.9
27
88
11
81
32
1
43
22
1.64
11222--11273
26
2.0
26
100
0
104
30
7
23
38
1.83
11589--11812
40
5.7
39
86
4
272
26
28
22
22
1.99
11589--11772
78
2.3
80
88
1
273
27
28
22
22
1.99
14712--14822
40
2.8
40
75
17
104
33
17
21
27
1.96
16023--16085
27
2.4
26
76
10
65
25
7
14
52
1.68
18001--18098
30
3.3
31
71
8
87
29
15
27
27
1.96
20237--20287
24
2.1
25
78
10
61
11
21
1
64
1.36
21334--21391
14
4.5
14
79
16
56
13
6
6
72
1.26
21350--21390
11
3.6
11
87
6
64
14
7
7
70
1.31
21335--21391
12
4.7
12
84
8
71
14
7
7
71
1.28
23058--23154
30
3.2
31
71
8
85
28
15
27
27
1.96
29849--30040
40
4.8
41
92
1
284
22
21
28
27
1.99
38152--38355
40
5.1
40
89
1
286
24
23
27
25
2.00
51078--51137
30
2.0
29
87
3
84
30
25
6
38
1.81
53571--53624
28
2.0
28
88
3
83
40
18
20
20
1.91
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
53561--53635
28
2.8
26
80
13
80
40
20
20
20
1.92
67553--67733
40
4.6
40
89
2
267
25
23
25
25
2.00
70779--70957
40
4.5
40
93
1
288
25
27
23
23
2.00
78806--78981
40
4.5
39
95
3
293
25
28
23
22
1.99
86896--87076
40
4.6
40
90
2
276
24
23
25
25
2.00
94939--95116
40
4.6
40
87
6
242
24
23
26
25
2.00
94939--95116
78
2.3
78
86
7
238
24
23
26
25
2.00
103059--103150
38
2.4
37
82
8
105
26
21
22
29
1.99

Tables:   1

The End!