genome.fa.s539.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold3799
Parameters: 2 7 7 80 10 50 1000
Length:  100985

Tables:   1   

This is table  1  of  1  ( 32 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4896--4934	18	2.2	18	90	9	62	41	17	0	41	1.50
29718--29785	29	2.3	29	85	5	93	27	30	13	27	1.94
29887--29965	29	2.7	30	82	13	110	29	30	15	25	1.96
36059--36097	17	2.2	18	95	4	71	38	0	15	46	1.46
41267--41524	40	6.5	41	85	7	300	25	25	23	25	2.00
41267--41521	120	2.1	119	85	6	338	25	25	23	25	2.00
46799--47022	40	5.7	40	84	7	255	25	22	28	24	2.00
46799--47022	79	2.8	80	82	9	253	25	22	28	24	2.00
46852--47022	78	2.2	78	86	6	229	25	21	28	24	1.99
46852--47055	79	2.6	79	82	5	209	26	21	27	24	1.99
56537--56607	27	2.6	27	84	0	88	32	16	7	43	1.75
56537--56620	27	3.1	27	73	10	73	29	20	7	42	1.78
56622--56751	27	4.9	27	76	11	108	41	22	8	27	1.82
56623--56726	53	1.9	53	84	5	138	40	22	8	28	1.83
56763--56814	27	1.9	27	88	7	79	40	13	11	34	1.81
56855--56932	27	2.9	27	75	11	79	37	23	20	19	1.95
57733--57881	26	5.8	26	86	0	194	26	23	22	28	1.99
58026--58114	42	2.1	42	91	0	142	30	13	20	35	1.91
58141--58219	31	2.5	31	93	0	140	29	17	26	26	1.98
60534--60618	27	3.1	27	88	3	118	29	17	8	44	1.78
60650--60772	27	4.6	27	81	9	137	43	22	6	27	1.78
60631--60747	54	2.2	52	80	10	130	41	23	8	26	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60650--60829	53	3.3	54	80	8	161	42	20	7	30	1.79
60650--60835	27	6.9	26	76	10	115	41	19	7	31	1.80
61754--61899	52	2.8	52	92	4	235	28	21	21	28	1.99
61754--61902	26	5.8	26	86	0	203	27	21	22	28	1.99
62047--62138	42	2.2	42	92	0	148	29	14	21	34	1.93
62162--62271	31	3.5	31	94	0	184	30	19	23	27	1.98
66031--66112	34	2.4	34	77	4	85	26	24	26	21	2.00
69880--69989	44	2.5	42	80	8	105	28	19	20	31	1.97
74065--74241	27	6.6	27	83	5	196	29	28	15	27	1.96
74086--74240	81	1.9	81	88	5	233	29	28	15	27	1.96

Tables:   1

The End!