genome.fa.s542.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold879
Parameters: 2 7 7 80 10 50 1000
Length:  99913

Tables:   1   

This is table  1  of  1  ( 40 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1585--1761	27	6.6	27	79	9	146	29	28	15	26	1.96
1585--1761	54	3.3	54	82	8	200	29	28	15	26	1.96
1606--1760	81	1.9	80	85	6	215	29	28	15	26	1.96
9659--9836	27	6.6	27	82	7	200	29	28	15	26	1.96
9680--9835	82	1.9	81	87	6	226	29	28	15	26	1.96
11667--11752	29	3.0	29	78	11	88	56	16	16	10	1.66
11676--11742	14	4.7	14	77	15	75	56	13	17	11	1.66
22572--22617	24	1.9	24	90	0	74	45	8	28	17	1.78
22894--23202	47	6.6	47	77	9	235	24	27	18	29	1.98
23035--23206	45	3.7	45	76	11	120	24	27	18	29	1.98
34300--34334	15	2.3	15	90	0	52	22	20	25	31	1.98
41275--41344	27	2.6	27	93	2	95	32	28	11	27	1.91
41277--41372	28	3.4	28	89	2	131	32	28	12	27	1.93
49537--49606	27	2.6	26	95	2	95	31	28	12	27	1.93
49537--49634	28	3.5	28	90	2	135	31	28	13	26	1.94
54247--54280	14	2.5	13	86	9	50	29	0	5	64	1.17
55670--55703	14	2.5	13	86	9	50	29	0	5	64	1.17
57092--57125	14	2.5	13	86	9	50	29	0	5	64	1.17
58515--58548	14	2.5	13	86	9	50	29	0	5	64	1.17
59938--59971	14	2.5	13	86	9	50	29	0	5	64	1.17
61361--61394	14	2.5	13	86	9	50	29	0	5	64	1.17
62784--62817	14	2.5	13	86	9	50	29	0	5	64	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64206--64239	14	2.5	13	86	9	50	29	0	5	64	1.17
65628--65661	14	2.5	13	86	9	50	29	0	5	64	1.17
67050--67083	14	2.5	13	86	9	50	29	0	5	64	1.17
68471--68504	14	2.5	13	86	9	50	29	0	5	64	1.17
69894--69927	14	2.5	13	86	9	50	29	0	5	64	1.17
71317--71350	14	2.5	13	86	9	50	29	0	5	64	1.17
72740--72773	14	2.5	13	86	9	50	29	0	5	64	1.17
74163--74196	14	2.5	13	86	9	50	29	0	5	64	1.17
75586--75619	14	2.5	13	86	9	50	29	0	5	64	1.17
77008--77041	14	2.5	13	86	9	50	29	0	5	64	1.17
78033--78072	18	2.2	19	90	4	64	37	5	5	52	1.45
80296--80380	43	2.0	43	82	13	104	25	30	18	24	1.98
82359--82499	40	3.5	40	93	1	230	27	29	19	23	1.98
82359--82539	40	4.5	39	85	8	195	28	27	18	24	1.98
82359--82539	80	2.3	80	84	5	233	28	27	18	24	1.98
93045--93180	39	3.5	37	86	10	150	27	27	19	26	1.99
93047--93220	78	2.2	79	83	6	210	26	26	20	26	1.99
93045--93220	40	4.5	39	86	7	205	26	26	20	26	1.99

Tables:   1

The End!