Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1378
Parameters: 2 7 7 80 10 50 1000
Length:  94086

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1566--1740
45
3.8
46
79
13
216
20
20
29
29
1.98
9090--9220
46
2.8
48
75
14
148
22
19
27
30
1.98
17499--17615
42
2.7
43
76
6
121
35
21
16
26
1.94
17476--17635
43
3.8
42
77
5
144
33
23
17
26
1.96
17476--17635
85
1.9
84
81
10
191
33
23
17
26
1.96
20809--20856
17
2.8
17
81
6
53
8
29
6
56
1.53
44520--44552
17
1.9
17
93
0
57
36
21
12
30
1.90
49490--49540
25
2.0
25
84
0
66
31
21
17
29
1.96
49580--49618
10
3.8
10
93
6
69
33
17
17
30
1.94
49579--49618
21
1.9
21
100
0
80
35
17
17
30
1.93
66209--66488
136
2.1
136
97
0
533
42
19
3
33
1.69
69071--69154
27
3.1
27
86
5
116
21
23
25
29
1.99
76820--76911
27
3.4
27
82
4
114
25
22
22
29
1.99
83160--83267
34
3.2
33
81
5
117
29
22
21
26
1.99
84983--85008
13
2.0
13
100
0
52
53
23
0
23
1.46
88829--89480
49
13.6
49
94
2
1053
33
8
29
29
1.86
88829--89480
145
4.5
145
94
2
1104
33
8
29
29
1.86
91611--91685
38
2.0
38
86
5
107
30
18
26
24
1.98
91739--92097
40
9.1
40
92
0
544
24
21
28
25
1.99

Tables:   1

The End!