Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2924
Parameters: 2 7 7 80 10 50 1000
Length:  92899

Tables:   1   

This is table  1  of  1  ( 42 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
10849--10901
23
2.4
22
76
20
56
69
1
16
11
1.26
16678--16744
20
3.4
19
76
15
64
37
14
20
26
1.92
16678--16744
10
6.7
10
70
13
57
37
14
20
26
1.92
16611--16774
90
1.8
90
98
0
319
35
14
23
26
1.94
16611--16744
30
4.5
30
64
15
80
36
15
22
25
1.94
17729--17775
17
2.6
17
78
18
51
65
4
25
4
1.29
20206--20230
13
1.9
13
100
0
50
28
0
8
64
1.22
22009--22071
12
5.2
12
72
0
54
12
23
0
63
1.29
22152--22189
15
2.6
15
95
4
69
10
10
0
78
0.95
24910--24936
10
2.7
10
100
0
54
18
11
29
40
1.85
26635--26693
26
2.4
24
80
8
64
13
22
0
64
1.28
26674--26698
12
2.1
12
100
0
50
8
16
0
76
1.02
26765--26834
20
3.3
20
77
18
72
5
17
1
75
1.06
27743--27796
12
4.6
12
90
4
74
16
5
5
72
1.23
27743--27798
23
2.4
24
90
3
87
17
5
7
69
1.31
29510--29606
30
3.2
30
71
8
90
27
15
28
27
1.96
30575--30614
19
2.1
19
85
0
53
25
35
17
22
1.95
32225--32271
10
4.7
10
84
10
60
80
4
4
10
0.98
32225--32271
20
2.3
20
92
3
76
80
4
4
10
0.98
37477--37516
19
2.1
19
85
0
53
25
35
17
22
1.95
39631--39657
10
2.7
10
100
0
54
18
11
29
40
1.85
46113--46175
30
2.1
31
88
8
94
26
4
28
39
1.76
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
48401--48451
13
3.9
13
84
0
66
72
1
11
13
1.20
48492--48518
1
27.0
1
100
0
54
100
0
0
0
0.00
48587--48627
21
1.9
22
85
14
59
60
9
4
24
1.47
55464--55488
13
1.9
13
100
0
50
36
16
32
16
1.90
55893--55993
30
3.4
30
71
4
87
31
14
26
26
1.95
59737--59789
23
2.4
22
76
20
56
9
18
1
69
1.25
69614--69701
30
2.9
30
78
6
88
29
25
17
28
1.97
74287--74331
14
3.3
14
84
6
65
48
13
0
37
1.42
74343--74412
22
3.3
22
64
28
60
38
15
11
34
1.84
74314--74419
42
2.5
42
98
1
203
40
14
12
33
1.83
83683--83727
14
3.3
14
84
6
65
48
13
0
37
1.42
84871--84967
30
3.2
30
70
8
81
27
27
16
27
1.97
86685--86743
15
4.4
14
78
16
54
71
6
6
15
1.29
86683--86713
10
3.0
10
90
9
53
67
9
3
19
1.33
86685--86713
11
2.7
11
94
5
51
72
6
3
17
1.21
87656--87713
30
2.0
29
86
10
82
75
1
18
3
1.03
87759--87789
12
2.6
12
100
0
62
45
12
16
25
1.83
87792--87816
12
2.1
12
100
0
50
76
0
16
8
1.02
87792--87872
29
2.7
31
77
9
96
64
1
22
12
1.34
87805--87858
28
1.9
28
85
7
74
61
1
24
12
1.42

Tables:   1

The End!