Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold2677
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 86877
ACGTcount: A:0.33, C:0.18, G:0.18, T:0.31
Found at i:6672 original size:30 final size:29
Alignment explanation
Indices: 6631--6694 Score: 83
Period size: 30 Copynumber: 2.2 Consensus size: 29
6621 ATTTCCGAGC
*
6631 TTGGGGACAAAAGTGTAATTATGCAAAAGT
1 TTGGGGACAAAAGTGTAATT-TGCAAAAAT
* * *
6661 TTGGGGGCAAAATTGTAATTTTCAAAAAT
1 TTGGGGACAAAAGTGTAATTTGCAAAAAT
6690 TTGGG
1 TTGGG
6695 TGGTGGATTA
Statistics
Matches: 30, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
29 12 0.40
30 18 0.60
ACGTcount: A:0.36, C:0.06, G:0.27, T:0.31
Consensus pattern (29 bp):
TTGGGGACAAAAGTGTAATTTGCAAAAAT
Found at i:15333 original size:34 final size:34
Alignment explanation
Indices: 15282--15369 Score: 95
Period size: 34 Copynumber: 2.6 Consensus size: 34
15272 GCAGAGCACA
* * *
15282 CAGTCTAGGCCTAAGCCCGTAATAGTAGCAATAT
1 CAGTGTAGGCCTAAGCCCATAATAGTAACAATAT
* * * * *
15316 CAGTGTGGGCCTCAGCCCATTATGGTAACAGTAT
1 CAGTGTAGGCCTAAGCCCATAATAGTAACAATAT
*
15350 CAGTGTAGGCCTTAGCCCAT
1 CAGTGTAGGCCTAAGCCCAT
15370 TTCAGTACAG
Statistics
Matches: 44, Mismatches: 10, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
34 44 1.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (34 bp):
CAGTGTAGGCCTAAGCCCATAATAGTAACAATAT
Found at i:18483 original size:43 final size:43
Alignment explanation
Indices: 18415--18573 Score: 146
Period size: 43 Copynumber: 3.7 Consensus size: 43
18405 AAAGCTCGTA
* * **
18415 CAATGCCAACGTCCCAGATGTGGTCTTACATGTAATCAAATAT
1 CAATGCCAATGTCCCAGAAGTGGTCTTACACATAATCAAATAT
* * *
18458 CAATGCCACTGTCCCAGACAG-GGTCTTACACAAAATCAATTA-
1 CAATGCCAATGTCCCAGA-AGTGGTCTTACACATAATCAAATAT
* * * *
18500 CGATGCCAATGTCCTAGACA-TGATATTACACATAAATCATAAT-T
1 CAATGCCAATGTCCCAGA-AGTGGTCTTACACAT-AATCA-AATAT
*
18544 CAATGCCAATGTCCCAGATGTGGTCTTACA
1 CAATGCCAATGTCCCAGAAGTGGTCTTACA
18574 TGAAAACACA
Statistics
Matches: 91, Mismatches: 19, Indels: 11
0.75 0.16 0.09
Matches are distributed among these distances:
42 26 0.29
43 38 0.42
44 27 0.30
ACGTcount: A:0.34, C:0.25, G:0.15, T:0.26
Consensus pattern (43 bp):
CAATGCCAATGTCCCAGAAGTGGTCTTACACATAATCAAATAT
Found at i:18519 original size:42 final size:43
Alignment explanation
Indices: 18448--18561 Score: 133
Period size: 42 Copynumber: 2.6 Consensus size: 43
18438 TCTTACATGT
* * *
18448 AATCAAATATCAATGCCACTGTCCCAGACAGGGTCTTACACA-A
1 AATCAAAT-TCAATGCCAATGTCCCAGACAGGATATTACACATA
* * *
18491 AATC-AATTACGATGCCAATGTCCTAGACATGATATTACACATA
1 AATCAAATT-CAATGCCAATGTCCCAGACAGGATATTACACATA
18534 AATCATAATTCAATGCCAATGTCCCAGA
1 AATCA-AATTCAATGCCAATGTCCCAGA
18562 TGTGGTCTTA
Statistics
Matches: 59, Mismatches: 8, Indels: 7
0.80 0.11 0.09
Matches are distributed among these distances:
41 1 0.02
42 29 0.49
43 9 0.15
44 16 0.27
45 4 0.07
ACGTcount: A:0.39, C:0.25, G:0.12, T:0.25
Consensus pattern (43 bp):
AATCAAATTCAATGCCAATGTCCCAGACAGGATATTACACATA
Found at i:23527 original size:27 final size:26
Alignment explanation
Indices: 23465--23565 Score: 105
Period size: 27 Copynumber: 3.7 Consensus size: 26
23455 AGCATGGCTG
*
23465 CCAGAACAGATAATGTGACAGAGT-CA
1 CCAGAACAGATAATGTGGCAGA-TCCA
*
23491 CCAAATACAGATAATCGTGGCAGATCCA
1 CCAGA-ACAGATAAT-GTGGCAGATCCA
* *
23519 CCAGAACAGTTATATGTGGCAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGATCCA
*
23546 CCAGATCAGATAATTGTGGC
1 CCAGAACAGATAA-TGTGGC
23566 GTAGCCACCA
Statistics
Matches: 63, Mismatches: 7, Indels: 9
0.80 0.09 0.11
Matches are distributed among these distances:
26 5 0.08
27 43 0.68
28 15 0.24
ACGTcount: A:0.37, C:0.22, G:0.23, T:0.19
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGATCCA
Found at i:23574 original size:54 final size:54
Alignment explanation
Indices: 23465--23575 Score: 136
Period size: 54 Copynumber: 2.1 Consensus size: 54
23455 AGCATGGCTG
* *
23465 CCAGAACAGATAATGTGACAGAGTCACCAAATACAGATAATCGTGGCAGATCCA
1 CCAGAACAGATAATGTGACAGAGCCACCAAATACAGATAATCGTGGCAGAGCCA
* * * *
23519 CCAGAACAGTTATATGTGGCAGAGCCACCAGAT-CAGATAATTGTGGC-GTAGCCA
1 CCAGAACAGATA-ATGTGACAGAGCCACCAAATACAGATAATCGTGGCAG-AGCCA
23573 CCA
1 CCA
23576 AGACGCTTCT
Statistics
Matches: 49, Mismatches: 6, Indels: 4
0.83 0.10 0.07
Matches are distributed among these distances:
53 1 0.02
54 31 0.63
55 17 0.35
ACGTcount: A:0.36, C:0.23, G:0.23, T:0.18
Consensus pattern (54 bp):
CCAGAACAGATAATGTGACAGAGCCACCAAATACAGATAATCGTGGCAGAGCCA
Found at i:27379 original size:27 final size:26
Alignment explanation
Indices: 27328--27411 Score: 98
Period size: 27 Copynumber: 3.2 Consensus size: 26
27318 AGCATGGCTG
* * *
27328 CCAGAACTGATAATGTGACAGAGCCA
1 CCAGAACAGATATTGTGGCAGAGCCA
27354 CCAGAACAGATATTTGTGGCAGAGCCA
1 CCAGAACAGATA-TTGTGGCAGAGCCA
*
27381 CCAGATCAGATAATTGTGGC-GTAGCCA
1 CCAGAACAGAT-ATTGTGGCAG-AGCCA
27408 CCAG
1 CCAG
27412 GACGCTTCCT
Statistics
Matches: 51, Mismatches: 4, Indels: 5
0.85 0.07 0.08
Matches are distributed among these distances:
26 12 0.24
27 38 0.75
28 1 0.02
ACGTcount: A:0.33, C:0.24, G:0.25, T:0.18
Consensus pattern (26 bp):
CCAGAACAGATATTGTGGCAGAGCCA
Found at i:27579 original size:28 final size:26
Alignment explanation
Indices: 27517--27579 Score: 72
Period size: 26 Copynumber: 2.3 Consensus size: 26
27507 AAAGTAACCC
** *
27517 TAGGGGTATAATGGTAATTTTGCACC
1 TAGGGGTATAACAGTAATTTTGCACA
*
27543 TAGGGGTATAACAGTAATTTTCCGTACA
1 TAGGGGTATAACAGTAATTTT--GCACA
27571 TAGGGGTAT
1 TAGGGGTAT
27580 TCAAGTAATT
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
26 19 0.61
28 12 0.39
ACGTcount: A:0.29, C:0.11, G:0.27, T:0.33
Consensus pattern (26 bp):
TAGGGGTATAACAGTAATTTTGCACA
Found at i:35170 original size:27 final size:26
Alignment explanation
Indices: 35133--35244 Score: 127
Period size: 27 Copynumber: 4.2 Consensus size: 26
35123 AGCATGGCGG
* *
35133 CCAGAACAGATAATGTGACAGAGTCA
1 CCAGAACAGATAATGTGGCAGAGCCA
*
35159 CCAGATACAGATAATCGTGGCAAAGCCA
1 CCAGA-ACAGATAAT-GTGGCAGAGCCA
*
35187 CCAGAATAGATATATGTGGCAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
*
35214 CCAGATCAGATAATTGTGGC-GTAGCCA
1 CCAGAACAGATAA-TGTGGCAG-AGCCA
35241 CCAG
1 CCAG
35245 GACGCTTCCT
Statistics
Matches: 74, Mismatches: 7, Indels: 9
0.82 0.08 0.10
Matches are distributed among these distances:
26 7 0.09
27 51 0.69
28 16 0.22
ACGTcount: A:0.37, C:0.22, G:0.24, T:0.17
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:35224 original size:54 final size:54
Alignment explanation
Indices: 35133--35244 Score: 154
Period size: 54 Copynumber: 2.1 Consensus size: 54
35123 AGCATGGCGG
*
35133 CCAGAACAGATAATGTGACAGAGTCACCAGATACAGATAATCGTGGCAAAGCCA
1 CCAGAACAGATAATGTGACAGAGCCACCAGATACAGATAATCGTGGCAAAGCCA
* * * **
35187 CCAGAATAGATATATGTGGCAGAGCCACCAGAT-CAGATAATTGTGGCGTAGCCA
1 CCAGAACAGATA-ATGTGACAGAGCCACCAGATACAGATAATCGTGGCAAAGCCA
35241 CCAG
1 CCAG
35245 GACGCTTCCT
Statistics
Matches: 51, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
54 33 0.65
55 18 0.35
ACGTcount: A:0.37, C:0.22, G:0.24, T:0.17
Consensus pattern (54 bp):
CCAGAACAGATAATGTGACAGAGCCACCAGATACAGATAATCGTGGCAAAGCCA
Found at i:39026 original size:51 final size:51
Alignment explanation
Indices: 38949--39147 Score: 319
Period size: 51 Copynumber: 3.9 Consensus size: 51
38939 TGGATACACG
* *
38949 GTGGCCTTCACATAGTACAACCCTTGTAG-CCAAAGCTATTTTATTCACAAA
1 GTGGCCTTCACATAGTACCACACTTGT-GTCCAAAGCTATTTTATTCACAAA
39000 GTGGCCTTCACATAGTACCACACTTGTGTCCAAAGCTATTTTATTCACAAA
1 GTGGCCTTCACATAGTACCACACTTGTGTCCAAAGCTATTTTATTCACAAA
* * *
39051 GTGGCCTTCACATAGTACCACACTTGTGTCCAAAGCTATTATATGCACCAA
1 GTGGCCTTCACATAGTACCACACTTGTGTCCAAAGCTATTTTATTCACAAA
* *
39102 CTGGCCTTCACATAGTACCACACTTATGTCCAAAGCTATTTTATTC
1 GTGGCCTTCACATAGTACCACACTTGTGTCCAAAGCTATTTTATTC
39148 CTAAGGTTCA
Statistics
Matches: 138, Mismatches: 9, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
50 1 0.01
51 137 0.99
ACGTcount: A:0.29, C:0.27, G:0.14, T:0.31
Consensus pattern (51 bp):
GTGGCCTTCACATAGTACCACACTTGTGTCCAAAGCTATTTTATTCACAAA
Found at i:39227 original size:52 final size:52
Alignment explanation
Indices: 39171--39293 Score: 187
Period size: 52 Copynumber: 2.4 Consensus size: 52
39161 GGGAAATTTC
39171 TCACTTAGCACCATGCCATGG-ACTTATTTCACTTAGATGCCATGGACTTATT
1 TCACTTAGCACCATGCCATGGTA-TTATTTCACTTAGATGCCATGGACTTATT
**
39223 TCACTTAGCA-CATTGCCATGGTATTATTTCACTTAGATGCCATGTTCTTATT
1 TCACTTAGCACCA-TGCCATGGTATTATTTCACTTAGATGCCATGGACTTATT
*
39275 TCACTTAGCACAATGCCAT
1 TCACTTAGCACCATGCCAT
39294 ATCCTAGATA
Statistics
Matches: 65, Mismatches: 3, Indels: 6
0.88 0.04 0.08
Matches are distributed among these distances:
51 2 0.03
52 61 0.94
53 2 0.03
ACGTcount: A:0.25, C:0.24, G:0.14, T:0.37
Consensus pattern (52 bp):
TCACTTAGCACCATGCCATGGTATTATTTCACTTAGATGCCATGGACTTATT
Found at i:39240 original size:28 final size:27
Alignment explanation
Indices: 39171--39293 Score: 143
Period size: 24 Copynumber: 4.7 Consensus size: 27
39161 GGGAAATTTC
39171 TCACTTAGCACCATGCCATGGACTTATT
1 TCACTTAGCA-CATGCCATGGACTTATT
39199 TCACTTAG---ATGCCATGGACTTATT
1 TCACTTAGCACATGCCATGGACTTATT
39223 TCACTTAGCACATTGCCATGGTA-TTATT
1 TCACTTAGCACA-TGCCATGG-ACTTATT
**
39251 TCACTTAG---ATGCCATGTTCTTATT
1 TCACTTAGCACATGCCATGGACTTATT
39275 TCACTTAGCACAATGCCAT
1 TCACTTAGCAC-ATGCCAT
39294 ATCCTAGATA
Statistics
Matches: 83, Mismatches: 2, Indels: 20
0.79 0.02 0.19
Matches are distributed among these distances:
24 44 0.53
25 1 0.01
27 1 0.01
28 36 0.43
29 1 0.01
ACGTcount: A:0.25, C:0.24, G:0.14, T:0.37
Consensus pattern (27 bp):
TCACTTAGCACATGCCATGGACTTATT
Found at i:46361 original size:27 final size:26
Alignment explanation
Indices: 46331--46406 Score: 116
Period size: 27 Copynumber: 2.8 Consensus size: 26
46321 ATAATAGTCT
46331 TTTTACCATACAGGGGTATTACGGTCA
1 TTTTACC-TACAGGGGTATTACGGTCA
*
46358 TTTTATCCTACAAGGGTATTACGGTCA
1 TTTTA-CCTACAGGGGTATTACGGTCA
46385 TTTTACCCTACAGGGGTATTAC
1 TTTTA-CCTACAGGGGTATTAC
46407 TATCAGATAA
Statistics
Matches: 45, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
27 43 0.96
28 2 0.04
ACGTcount: A:0.25, C:0.20, G:0.20, T:0.36
Consensus pattern (26 bp):
TTTTACCTACAGGGGTATTACGGTCA
Found at i:55217 original size:22 final size:22
Alignment explanation
Indices: 55146--55217 Score: 60
Period size: 22 Copynumber: 3.1 Consensus size: 22
55136 TCCATAATGC
55146 GTTGAATCATATTGATATCATTA
1 GTTGAATCATATTGATATCA-TA
*
55169 -TTAGAAT-ATACT-ATTATACAATGA
1 GTT-GAATCATATTGA-TAT-C-AT-A
55193 GTTGAATCATATTGATATCATA
1 GTTGAATCATATTGATATCATA
55215 GTT
1 GTT
55218 TGAAAGACAT
Statistics
Matches: 39, Mismatches: 2, Indels: 17
0.67 0.03 0.29
Matches are distributed among these distances:
21 1 0.03
22 13 0.33
23 8 0.21
24 7 0.18
25 9 0.23
26 1 0.03
ACGTcount: A:0.38, C:0.08, G:0.12, T:0.42
Consensus pattern (22 bp):
GTTGAATCATATTGATATCATA
Found at i:58623 original size:31 final size:31
Alignment explanation
Indices: 58585--58647 Score: 108
Period size: 31 Copynumber: 2.0 Consensus size: 31
58575 AGTTCTAGAC
58585 ATGAATAGTAAATTACATGAAATTATTATGT
1 ATGAATAGTAAATTACATGAAATTATTATGT
* *
58616 ATGAATAGTAAATTGCATGAAATTATTCTGT
1 ATGAATAGTAAATTACATGAAATTATTATGT
58647 A
1 A
58648 AACTCTGGTA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.43, C:0.05, G:0.14, T:0.38
Consensus pattern (31 bp):
ATGAATAGTAAATTACATGAAATTATTATGT
Found at i:59668 original size:18 final size:17
Alignment explanation
Indices: 59625--59691 Score: 71
Period size: 18 Copynumber: 3.8 Consensus size: 17
59615 TATCTCCAAA
59625 ACATATAAGGGTTTACAT
1 ACATATAAGGG-TTACAT
* * *
59643 ATACATAAAGGTTCACAT
1 ACATATAAGGGTT-ACAT
59661 ACATATAAGGGTTAGCAT
1 ACATATAAGGGTTA-CAT
*
59679 GCATATAAGGGTT
1 ACATATAAGGGTT
59692 TGTCAATTTG
Statistics
Matches: 40, Mismatches: 7, Indels: 4
0.78 0.14 0.08
Matches are distributed among these distances:
17 3 0.08
18 37 0.93
ACGTcount: A:0.39, C:0.12, G:0.19, T:0.30
Consensus pattern (17 bp):
ACATATAAGGGTTACAT
Found at i:60184 original size:17 final size:16
Alignment explanation
Indices: 60162--60196 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 16
60152 ACCGTACTTT
*
60162 TTTCATACATTCAATCA
1 TTTCATACAATC-ATCA
60179 TTTCATACAATCATCA
1 TTTCATACAATCATCA
60195 TT
1 TT
60197 CAATTTCTCC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 6 0.35
17 11 0.65
ACGTcount: A:0.34, C:0.23, G:0.00, T:0.43
Consensus pattern (16 bp):
TTTCATACAATCATCA
Found at i:67065 original size:45 final size:45
Alignment explanation
Indices: 67001--67227 Score: 316
Period size: 45 Copynumber: 5.1 Consensus size: 45
66991 GGAAAGAACT
* *
67001 GGTGAAATGTTATTTGGGCCTTTGAGCCTAGCAAGCTATAATGCC
1 GGTGAAATGTTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCC
67046 GGTGAAATGTTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCC
1 GGTGAAATGTTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCC
* *
67091 GGTGAGATATTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCC
1 GGTGAAATGTTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCC
* ** * * *
67136 GGTGAGATACTATTCGGGCCTTTGAGACTAACATGCTATAATGCC
1 GGTGAAATGTTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCC
* * *
67181 GGTGAAATGATA-TCGGGCC-TCGAGCCTAGCAGGCGA-AATGCC
1 GGTGAAATGTTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCC
67223 GGTGA
1 GGTGA
67228 TTTGAGAAAA
Statistics
Matches: 166, Mismatches: 16, Indels: 3
0.90 0.09 0.02
Matches are distributed among these distances:
42 11 0.07
43 12 0.07
44 7 0.04
45 136 0.82
ACGTcount: A:0.24, C:0.20, G:0.29, T:0.27
Consensus pattern (45 bp):
GGTGAAATGTTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCC
Found at i:70453 original size:39 final size:39
Alignment explanation
Indices: 70249--70471 Score: 232
Period size: 40 Copynumber: 5.6 Consensus size: 39
70239 TTGAATGCTG
* * * * * *
70249 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTGTGC-GAGTTACTAAA
* * *
70289 TCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGG-CATTGTGCGAGTTACTAAA
*
70329 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATT-GTGCGAGTTACTAAA
* **
70369 TCCGGGTTAAGTCCCGAAGGCAGTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCA-TTGTGCGAGTTACTAAA
* *
70409 TCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAAA
* * *
70448 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
70472 TGAACGAGGA
Statistics
Matches: 158, Mismatches: 20, Indels: 11
0.84 0.11 0.06
Matches are distributed among these distances:
39 39 0.25
40 109 0.69
41 10 0.06
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (39 bp):
TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAAA
Found at i:70491 original size:79 final size:80
Alignment explanation
Indices: 70324--70506 Score: 217
Period size: 79 Copynumber: 2.3 Consensus size: 80
70314 GTGCGAGATA
* * *
70324 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
** **
70389 CAGTCGTGCGAGTTG
66 CAGTCGAACGAGGAG
* * * *
70404 TTAAATCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
* *
70468 CATTTGAACGAGGAG
66 CAGTCGAACGAGGAG
* *
70483 CTATATCC-GGTTAAATCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGG
70507 TACGTGATTT
Statistics
Matches: 86, Mismatches: 17, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
78 14 0.16
79 45 0.52
80 27 0.31
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (80 bp):
CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
CAGTCGAACGAGGAG
Found at i:72301 original size:37 final size:37
Alignment explanation
Indices: 72247--72345 Score: 171
Period size: 37 Copynumber: 2.7 Consensus size: 37
72237 TAGTCCCCAG
* *
72247 ACGTAGTTATCGAGTCTTACCCGGACAAAATCTCCAC
1 ACGTAGTCATCGGGTCTTACCCGGACAAAATCTCCAC
*
72284 ACGTAGTCATCGGGTCTTACCCGGACATAATCTCCAC
1 ACGTAGTCATCGGGTCTTACCCGGACAAAATCTCCAC
72321 ACGTAGTCATCGGGTCTTACCCGGA
1 ACGTAGTCATCGGGTCTTACCCGGA
72346 ATATATTTCC
Statistics
Matches: 59, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 59 1.00
ACGTcount: A:0.25, C:0.30, G:0.20, T:0.24
Consensus pattern (37 bp):
ACGTAGTCATCGGGTCTTACCCGGACAAAATCTCCAC
Found at i:72544 original size:48 final size:48
Alignment explanation
Indices: 72486--73265 Score: 1281
Period size: 48 Copynumber: 16.0 Consensus size: 48
72476 ATATACACAC
* *
72486 ATCTCCTACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
72534 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
72582 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* *
72630 ATGTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
72678 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* *
72726 ATCTCATATATATATTTCACATTAGTCATTCGGCTTTACCACATATACAT
1 ATCTC--ATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
72776 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
72824 ATCTCATATATATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTC--ATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
72874 ATCTCATACATATTTCACATTAGCCATTTGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
72922 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* *
72970 ATCTCATATATATATATTTCACATTAGCCATTCGGCTTTACCACATATACGT
1 ATCTC----ATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
73022 ATCTCATACATATTTCACATTATCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
73070 ATCTCATATATATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTC--ATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
73120 ATCTCATACATATTTCACATTAGCCATTCAGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
73168 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* * * *
73216 ATCTCATACATATTTCACACTAGCCATTTGGCTTTACCACACATATAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
73264 AT
1 AT
73266 ATTTATCTTG
Statistics
Matches: 694, Mismatches: 28, Indels: 20
0.94 0.04 0.03
Matches are distributed among these distances:
48 511 0.74
50 138 0.20
52 45 0.06
ACGTcount: A:0.31, C:0.27, G:0.06, T:0.36
Consensus pattern (48 bp):
ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
Found at i:72808 original size:98 final size:96
Alignment explanation
Indices: 72486--73265 Score: 1281
Period size: 98 Copynumber: 8.0 Consensus size: 96
72476 ATATACACAC
* *
72486 ATCTCCTACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
72551 CACTAGCCATTCGGCTTTACCACATATACAT
66 CACTAGCCATTCGGCTTTACCACATATACAT
* *
72582 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATGTCATACATATTTCA
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
72647 CACTAGCCATTCGGCTTTACCACATATACAT
66 CACTAGCCATTCGGCTTTACCACATATACAT
* *
72678 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATATATATATTT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC--ATACATATTT
* *
72743 CACATTAGTCATTCGGCTTTACCACATATACAT
64 CACACTAGCCATTCGGCTTTACCACATATACAT
*
72776 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATATATTT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC--ATACATATTT
*
72841 CACATTAGCCATTCGGCTTTACCACATATACAT
64 CACACTAGCCATTCGGCTTTACCACATATACAT
*
72874 ATCTCATACATATTTCACATTAGCCATTTGGCTTTACCACATATACATATCTCATACATATTTCA
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
72939 CACTAGCCATTCGGCTTTACCACATATACAT
66 CACTAGCCATTCGGCTTTACCACATATACAT
* *
72970 ATCTCATATATATATATTTCACATTAGCCATTCGGCTTTACCACATATACGTATCTCATACATAT
1 ATCTC----ATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATAT
* *
73035 TTCACATTATCCATTCGGCTTTACCACATATACAT
62 TTCACACTAGCCATTCGGCTTTACCACATATACAT
*
73070 ATCTCATATATATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTT
1 ATCTC--ATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTT
* *
73135 CACATTAGCCATTCAGCTTTACCACATATACAT
64 CACACTAGCCATTCGGCTTTACCACATATACAT
73168 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
* * *
73233 CACTAGCCATTTGGCTTTACCACACATATAT
66 CACTAGCCATTCGGCTTTACCACATATACAT
73264 AT
1 AT
73266 ATTTATCTTG
Statistics
Matches: 653, Mismatches: 25, Indels: 12
0.95 0.04 0.02
Matches are distributed among these distances:
96 279 0.43
98 283 0.43
100 91 0.14
ACGTcount: A:0.31, C:0.27, G:0.06, T:0.36
Consensus pattern (96 bp):
ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
CACTAGCCATTCGGCTTTACCACATATACAT
Found at i:80343 original size:45 final size:45
Alignment explanation
Indices: 80279--80504 Score: 307
Period size: 45 Copynumber: 5.1 Consensus size: 45
80269 GGAAAGAACT
*
80279 GGTGAAATGTTATTTGGGCCTTTGAGCCTAGCAGGCTATAATGCC
1 GGTGAAATGTTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCC
80324 GGTGAAATGTTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCC
1 GGTGAAATGTTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCC
* * *
80369 GGTGAGATATTATTCGGGCCTTTGAGCCTAGCAGGCTCTAATGCC
1 GGTGAAATGTTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCC
* * ** * *
80414 AGTGAGATACTATTCGGGCCTTTGAGACTAACAGGCTATAAT-CC
1 GGTGAAATGTTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCC
* * *
80458 GGTGAAATGATA-TCGGGCC-TCGAGCCTAGCAGGCGA-AATGCC
1 GGTGAAATGTTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCC
80500 GGTGA
1 GGTGA
80505 TTTGAGAAAA
Statistics
Matches: 163, Mismatches: 17, Indels: 5
0.88 0.09 0.03
Matches are distributed among these distances:
41 3 0.02
42 20 0.12
43 7 0.04
44 10 0.06
45 123 0.75
ACGTcount: A:0.24, C:0.20, G:0.29, T:0.27
Consensus pattern (45 bp):
GGTGAAATGTTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCC
Found at i:82440 original size:35 final size:36
Alignment explanation
Indices: 82388--82484 Score: 151
Period size: 35 Copynumber: 2.7 Consensus size: 36
82378 TAGTCCCCAG
*
82388 ACGTAGTTATCGAGTCTTACCCGGACAAAATCTCCAC
1 ACGTAGTCATCG-GTCTTACCCGGACAAAATCTCCAC
*
82425 A-GTAGTCATCGGTCTTACCCGGACATAATCTCCAC
1 ACGTAGTCATCGGTCTTACCCGGACAAAATCTCCAC
82460 ACGTAGTCATCGGGTCTTACCCGGA
1 ACGTAGTCATC-GGTCTTACCCGGA
82485 ATATATTTCC
Statistics
Matches: 56, Mismatches: 2, Indels: 4
0.90 0.03 0.06
Matches are distributed among these distances:
35 24 0.43
36 18 0.32
37 14 0.25
ACGTcount: A:0.26, C:0.30, G:0.20, T:0.25
Consensus pattern (36 bp):
ACGTAGTCATCGGTCTTACCCGGACAAAATCTCCAC
Found at i:82698 original size:48 final size:48
Alignment explanation
Indices: 82620--83812 Score: 1822
Period size: 48 Copynumber: 25.0 Consensus size: 48
82610 ATATACACAC
* * *
82620 ATCTCCTACATATTTTCACACTAGCAATTCGGCTTTACCACATATACAT
1 ATCTCATACATA-TTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
82669 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
82717 ATCTCATACATATTTCACACTAGCCA-TC--CTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* * *
82762 ATGTCATACATATTTCACACTAGCCATTCAGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
82810 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATACACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
82858 ATCTCGTATCATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATA-CATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
82907 -TCTCGTAC-TATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
82953 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* *
83001 ATCTCATAATATATATTTCACATTATCCATTCGGCTTTACCACATATACAT
1 ATCTC---ATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
83052 ATCTCATACATATTTCACATTAGCCATTCGGCTTTA-CACACAT--AT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
83097 -TCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* *
83144 ATCTCATATATATATATTCACATTAGCCATTCGGCTTTACCACATATACGT
1 ATCTC--ATACATAT-TTCACATTAGCCATTCGGCTTTACCACATATACAT
* *
83195 ATCTCATACATATTTCACATTATCCA-TC-GC-TTATCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
83240 ATCTCATATATAATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACAT-ATTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
83289 ATCTCATATATATTTCACATTAGCCATTCGGCTTTA-CACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
83336 A-CTCATACATATTTCACATTAGCCATTCGGCTTTACCACAATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCAC-ATATACAT
*
83384 ATCTCATATATATTTCACATTAGCC-TTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
83431 ATCTCATACATATTTCACATTAGCCATTCGGC-TTACCACATA-ACA-
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
83476 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* *
83524 ATCAT-ATATAATATTTCACATTAGCCATTCGGCTTTA-CACATATACGT
1 ATC-TCATA-CATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
83572 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
83620 ATCTCATATATATTATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTC--ATACA-TATTTCACATTAGCCATTCGGCTTTACCACATATACAT
83671 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
83719 ATCTCATACATATTTCACATTAGCCATTC-GCTTTACCAC--ATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* * *
83764 ATCTCATACATATTTCACACTAGCCATT-GGCTTTACCACACATATAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
83811 AT
1 AT
83813 ATTTATCTTG
Statistics
Matches: 1067, Mismatches: 40, Indels: 76
0.90 0.03 0.06
Matches are distributed among these distances:
44 34 0.03
45 147 0.14
46 102 0.10
47 127 0.12
48 384 0.36
49 135 0.13
50 11 0.01
51 127 0.12
ACGTcount: A:0.32, C:0.27, G:0.06, T:0.36
Consensus pattern (48 bp):
ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
Found at i:82946 original size:22 final size:22
Alignment explanation
Indices: 82874--82946 Score: 62
Period size: 22 Copynumber: 3.2 Consensus size: 22
82864 TATCATATTT
82874 CACATTAGCCATTCGGCTTTAC
1 CACATTAGCCATTCGGCTTTAC
* *
82896 CACATATA--CATTCTCGTACTATT-T
1 CACAT-TAGCCA-T-TCG-GCT-TTAC
82920 CACATTAGCCATTCGGCTTTAC
1 CACATTAGCCATTCGGCTTTAC
82942 CACAT
1 CACAT
82947 ATACATATCT
Statistics
Matches: 39, Mismatches: 4, Indels: 16
0.66 0.07 0.27
Matches are distributed among these distances:
21 4 0.10
22 13 0.33
23 10 0.26
24 8 0.21
25 4 0.10
ACGTcount: A:0.26, C:0.30, G:0.10, T:0.34
Consensus pattern (22 bp):
CACATTAGCCATTCGGCTTTAC
Found at i:82969 original size:143 final size:144
Alignment explanation
Indices: 82620--83812 Score: 1822
Period size: 143 Copynumber: 8.3 Consensus size: 144
82610 ATATACACAC
* * *
82620 ATCTCCTACATATTTTCACACTAGCAATTCGGCTTTACCACATATACATATCTCATACATATTTC
1 ATCTCATACATA-TTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTC
* *
82685 ACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACACTAGCCA-TC--CT
65 ACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCT
82747 TTACCACATATACAT
130 TTACCACATATACAT
* * *
82762 ATGTCATACATATTTCACACTAGCCATTCAGCTTTACCACATATACATATCTCATACATATTTCA
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
* *
82827 CATTAGCCATTCGGCTTTACCACATACACATATCTCGTATCATATTTCACATTAGCCATTCGGCT
66 CATTAGCCATTCGGCTTTACCACATATACATATCTCATA-CATATTTCACATTAGCCATTCGGCT
82892 TTACCACATATACAT
130 TTACCACATATACAT
*
82907 -TCTCGTAC-TATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
* *
82970 CATTAGCCATTCGGCTTTACCACATATACATATCTCATAATATATATTTCACATTATCCATTCGG
66 CATTAGCCATTCGGCTTTACCACATATACATATCTC---ATACATATTTCACATTAGCCATTCGG
83035 CTTTACCACATATACAT
128 CTTTACCACATATACAT
*
83052 ATCTCATACATATTTCACATTAGCCATTCGGCTTTA-CACACAT--AT-TCTCATACATATTTCA
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
* *
83113 CACTAGCCATTCGGCTTTACCACATATACATATCTCATATATATATATTCACATTAGCCATTCGG
66 CATTAGCCATTCGGCTTTACCACATATACATATCTC--ATACATAT-TTCACATTAGCCATTCGG
*
83178 CTTTACCACATATACGT
128 CTTTACCACATATACAT
* * *
83195 ATCTCATACATATTTCACATTATCCA-TC-GC-TTATCACATATACATATCTCATATATAATTTC
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACAT-ATTTC
*
83257 ACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATATTTCACATTAGCCATTCGGCT
65 ACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCT
83322 TTA-CACATATACAT
130 TTACCACATATACAT
*
83336 A-CTCATACATATTTCACATTAGCCATTCGGCTTTACCACAATATACATATCTCATATATATTTC
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCAC-ATATACATATCTCATACATATTTC
83400 ACATTAGCC-TTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCGGC-
65 ACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCT
83463 TTACCACATA-ACA-
130 TTACCACATATACAT
* *
83476 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCAT-ATATAATATTT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATC-TCATA-CATATTT
*
83540 CACATTAGCCATTCGGCTTTA-CACATATACGTATCTCATACATATTTCACATTAGCCATTCGGC
64 CACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCGGC
83604 TTTACCACATATACAT
129 TTTACCACATATACAT
*
83620 ATCTCATATATATTATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATT
1 ATCTC--ATACA-TATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATT
83685 TCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTC-G
63 TCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCGG
83749 CTTTACCAC--ATACAT
128 CTTTACCACATATACAT
* * *
83764 ATCTCATACATATTTCACACTAGCCATT-GGCTTTACCACACATATATAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATAT
83813 ATTTATCTTG
Statistics
Matches: 977, Mismatches: 42, Indels: 66
0.90 0.04 0.06
Matches are distributed among these distances:
140 60 0.06
141 227 0.23
142 145 0.15
143 232 0.24
144 52 0.05
145 96 0.10
146 57 0.06
147 108 0.11
ACGTcount: A:0.32, C:0.27, G:0.06, T:0.36
Consensus pattern (144 bp):
ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
CATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTT
TACCACATATACAT
Found at i:83356 original size:382 final size:383
Alignment explanation
Indices: 82629--83812 Score: 1860
Period size: 382 Copynumber: 3.1 Consensus size: 383
82619 CATCTCCTAC
* *
82629 ATAT-TTTCACACTAGCAATTCGGCTTTACCACATATACATATCTCATACATATTTCACACTAGC
1 ATATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGC
*
82693 CATTCGGCTTTACCACATATACATATCTCATACATATTTCACACTAGCCA-TC--CTTTACCACA
66 CATTCGGCTTTA-CACACATA-AT-TCTCATACATATTTCACACTAGCCATTCGGCTTTACCACA
* * * *
82755 TATACATATGTC--ATACATAT-TTCACACTAGCCATTCAGCTTTACCACATATACATATCTCAT
128 TATACATAT-TCATATATATATATTCACATTAGCCATTCGGCTTTACCACATATACGTATCTCAT
* *
82817 ACATATTTCACATTAGCCATTCGGCTTTACCACATACACATATCTCGTATCAT-ATTTCACATTA
192 ACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATAT-ATAATTTCACATTA
* *
82881 GCCATTCGGCTTTACCACATATACAT-TCTCGTACTATTTCACATTAGCCATTCGGCTTTACCAC
256 GCCATTCGGCTTTACCACATATACATATCTCATAATATTTCACATTAGCCATTCGGCTTTACCAC
82945 ATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATAA
321 ATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC---A
83010 T
383 T
* *
83011 ATATATTTCACATTATCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGC
1 ATATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGC
83076 CATTCGGCTTTACACACAT-ATTCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATAT
66 CATTCGGCTTTACACACATAATTCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATAT
83140 ACATATCTCATATATATATATTCACATTAGCCATTCGGCTTTACCACATATACGTATCTCATACA
131 ACATAT-TCATATATATATATTCACATTAGCCATTCGGCTTTACCACATATACGTATCTCATACA
* *
83205 TATTTCACATTATCCA-TC-GC-TTATCACATATACATATCTCATATATAATTTCACATTAGCCA
195 TATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAATTTCACATTAGCCA
83267 TTCGGCTTTACCACATATACATATCTCATATATATTTCACATTAGCCATTCGGCTTTA-CACATA
260 TTCGGCTTTACCACATATACATATCTCATA-ATATTTCACATTAGCCATTCGGCTTTACCACATA
83331 TACATA-CTCATACATATTTCACATTAGCCATTCGGCTTTACCACAATATACATATCTCAT
324 TACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCAC-ATATACATATCTCAT
*
83391 ATATATTTCACATTAGCC-TTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGC
1 ATATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGC
*
83455 CATTCGGC-TTAC-CACATAACAATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACAT
66 CATTCGGCTTTACACACAT-A-ATTCTCATACATATTTCACACTAGCCATTCGGCTTTACCACAT
83518 ATACATA-TCATATATA-ATATTTCACATTAGCCATTCGGCTTTA-CACATATACGTATCTCATA
129 ATACATATTCATATATATATA-TTCACATTAGCCATTCGGCTTTACCACATATACGTATCTCATA
83580 CATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATATTATTTCACATTA
193 CATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATA--ATTTCACATTA
83645 GCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCA
256 GCCATTCGGCTTTACCACATATACATATCTCATA-ATATTTCACATTAGCCATTCGGCTTTACCA
83710 CATATACATATCTCATACATATTTCACATTAGCCATTC-GCTTTACCAC--ATACATATCTCAT
320 CATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCAT
* * *
83771 ACATATTTCACACTAGCCATT-GGCTTTACCACACATATATAT
1 ATATATTTCACACTAGCCATTCGGCTTTACCACATATACATAT
83813 ATTTATCTTG
Statistics
Matches: 754, Mismatches: 25, Indels: 48
0.91 0.03 0.06
Matches are distributed among these distances:
377 44 0.06
378 38 0.05
379 81 0.11
380 146 0.19
381 4 0.01
382 199 0.26
383 123 0.16
384 62 0.08
385 57 0.08
ACGTcount: A:0.32, C:0.27, G:0.06, T:0.36
Consensus pattern (383 bp):
ATATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGC
CATTCGGCTTTACACACATAATTCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATAT
ACATATTCATATATATATATTCACATTAGCCATTCGGCTTTACCACATATACGTATCTCATACAT
ATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAATTTCACATTAGCCAT
TCGGCTTTACCACATATACATATCTCATAATATTTCACATTAGCCATTCGGCTTTACCACATATA
CATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCAT
Done.