genome.fa.s550.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1181
Parameters: 2 7 7 80 10 50 1000
Length:  83823

Tables:   1   

This is table  1  of  1  ( 35 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9708--9782	38	1.9	40	86	5	109	21	24	26	28	1.99
9802--9886	43	2.0	43	90	0	134	12	22	34	30	1.92
15906--16139	40	5.9	39	92	3	353	23	28	23	25	2.00
17725--17863	68	2.0	68	98	0	269	43	17	3	34	1.67
19691--19738	25	1.9	25	100	0	96	25	16	14	43	1.86
22700--22739	21	1.9	21	84	0	53	20	12	10	57	1.63
24657--24683	12	2.2	12	100	0	54	59	0	7	33	1.25
24789--24823	17	2.1	17	89	5	54	51	2	0	45	1.16
27818--27899	41	2.0	41	95	0	146	29	12	34	24	1.91
33392--33567	46	3.8	46	78	14	182	20	20	29	29	1.98
33388--33558	93	1.8	93	92	2	290	21	21	29	28	1.98
34933--35189	40	6.5	40	89	2	333	25	28	23	22	1.99
40052--40161	26	4.2	26	95	0	175	33	6	24	35	1.81
47702--47779	38	2.1	38	95	0	138	38	29	7	24	1.83
50636--50675	11	3.6	11	93	0	62	60	0	0	40	0.97
51570--51609	20	2.1	18	90	9	62	37	5	7	50	1.53
53363--53445	10	8.6	10	77	17	70	57	0	2	39	1.12
53373--53445	19	3.8	19	72	17	62	58	0	2	38	1.12
53356--53445	29	3.1	29	74	7	103	60	0	2	37	1.09
53338--53484	57	2.5	57	78	11	149	61	1	4	32	1.23
53372--53465	29	3.3	27	75	14	91	57	1	4	37	1.25
58169--58245	34	2.3	34	82	8	86	32	12	14	40	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58181--58258	34	2.3	34	80	10	97	28	12	15	43	1.83
59278--59327	23	2.3	20	80	16	55	46	4	0	50	1.20
61523--61605	28	3.0	27	78	15	89	22	15	6	55	1.62
65146--65170	11	2.3	11	100	0	50	36	24	8	32	1.84
67844--67877	15	2.3	15	94	0	59	64	5	2	26	1.30
68261--68299	18	2.2	18	86	9	53	69	2	0	28	1.02
68601--68633	17	1.9	17	88	11	50	42	0	0	57	0.98
72637--72773	58	2.4	58	78	2	141	47	1	2	48	1.26
72868--72960	44	2.1	46	82	8	111	34	23	6	35	1.81
76408--76588	40	4.6	40	82	2	107	24	26	24	24	2.00
76443--76626	40	4.6	41	88	4	252	23	26	24	25	2.00
76444--76624	81	2.3	80	83	7	242	23	27	24	24	2.00
83686--83727	19	2.2	19	87	8	59	38	9	0	52	1.34

Tables:   1

The End!