genome.fa.s552.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1700
Parameters: 2 7 7 80 10 50 1000
Length:  79381

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
268--313	17	2.8	17	90	3	67	2	10	86	0	0.64
268--316	21	2.3	20	86	13	64	2	12	85	0	0.68
268--327	17	3.7	16	76	14	52	1	16	81	0	0.77
4121--4183	25	2.6	23	80	12	63	33	3	23	39	1.71
10584--10690	26	4.2	25	86	10	153	37	27	6	28	1.82
17730--17835	25	4.1	26	83	7	137	34	24	7	33	1.84
22171--22488	44	7.2	44	70	8	196	32	17	22	27	1.96
22171--22475	132	2.3	132	86	2	407	32	17	22	26	1.96
22438--23020	175	3.3	175	92	0	934	32	18	20	27	1.96
22438--23054	87	7.1	87	66	17	278	32	18	20	28	1.96
23469--23525	17	3.5	15	84	15	53	38	10	15	35	1.82
23469--23558	36	2.3	38	88	9	130	36	10	15	37	1.81
23469--23549	19	4.3	19	90	9	130	38	9	16	35	1.81
34853--35017	28	5.9	28	82	7	133	26	21	15	36	1.93
34853--35017	56	2.9	55	81	5	170	26	21	15	36	1.93
46137--46169	17	1.9	17	100	0	66	42	18	15	24	1.88
50591--50724	46	2.9	46	87	4	198	27	26	15	30	1.96
50581--50737	46	3.4	46	80	6	183	26	24	15	33	1.96
51149--51251	53	1.9	53	88	0	152	53	7	16	22	1.68
61265--61378	45	2.6	43	83	5	122	30	23	16	28	1.96
61493--61612	46	2.6	46	78	3	127	30	16	21	31	1.96
61710--62070	143	2.5	143	84	1	463	28	22	19	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66209--66247	20	2.0	20	85	10	53	5	33	7	53	1.51
66865--66906	15	2.7	16	79	20	61	54	14	7	23	1.64
66865--66903	14	2.5	15	84	15	53	56	12	7	23	1.62
68186--68224	20	1.9	21	89	5	62	79	0	5	15	0.90
68185--68225	14	2.7	15	85	7	57	80	0	4	14	0.87
70999--71053	24	2.3	24	100	0	110	20	34	18	27	1.95
76642--76988	40	8.7	40	94	2	601	31	20	26	21	1.98

Tables:   1

The End!