Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1336
Parameters: 2 7 7 80 10 50 1000
Length:  71416

Tables:   1   

This is table  1  of  1  ( 22 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1476--1885
47
8.6
47
89
5
597
29
29
8
32
1.86
1476--1885
96
4.3
96
90
4
618
29
29
8
32
1.86
4951--5360
47
8.6
47
90
5
615
29
29
8
32
1.86
4951--5360
96
4.3
96
91
4
636
29
29
8
32
1.86
8425--8834
47
8.6
47
90
5
615
29
29
8
32
1.86
8425--8834
96
4.3
96
91
4
636
29
29
8
32
1.86
11899--12306
47
8.6
47
89
6
606
29
29
8
32
1.87
11899--12306
96
4.3
96
90
5
627
29
29
8
32
1.87
11899--12306
194
2.1
188
89
6
583
29
29
8
32
1.87
15019--15066
24
2.0
24
100
0
96
25
8
37
29
1.85
19836--19990
43
3.7
43
77
10
165
24
18
27
29
1.98
25925--26040
50
2.4
47
83
8
137
26
22
14
36
1.93
37355--37548
50
3.9
49
78
6
185
26
29
19
25
1.98
50432--50572
39
3.6
39
86
0
176
23
20
28
27
1.99
52525--52632
44
2.5
42
82
11
114
28
29
20
21
1.98
57695--57866
93
1.8
93
95
2
310
28
29
20
20
1.98
57688--57863
46
3.8
46
79
14
209
29
29
20
20
1.98
61559--61656
27
3.5
28
91
2
144
26
12
28
32
1.92
61584--61669
27
3.1
27
88
5
111
30
11
24
33
1.91
69324--69350
12
2.2
12
100
0
54
51
7
0
40
1.30
69795--69892
27
3.5
28
90
2
135
26
13
28
31
1.94
69823--69905
27
3.0
27
87
5
96
30
12
25
32
1.92

Tables:   1

The End!