Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2601
Parameters: 2 7 7 80 10 50 1000
Length:  62402

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
157--234
29
2.7
29
84
7
97
28
33
14
24
1.94
2372--2774
49
8.4
49
92
4
664
30
28
7
33
1.86
2368--2774
195
2.1
190
93
4
683
30
28
7
32
1.86
2788--2827
18
2.1
20
86
9
57
40
20
2
37
1.66
8122--8567
49
9.3
49
88
7
620
29
29
8
32
1.86
22351--22473
41
2.9
42
76
12
126
29
27
18
24
1.98
22341--22495
43
3.7
43
78
10
165
29
27
18
24
1.98
27260--27307
24
2.0
24
100
0
96
29
37
8
25
1.85
32947--33154
27
7.7
27
81
0
155
36
22
7
34
1.82
32914--33131
81
2.7
81
79
0
256
33
22
8
35
1.84
32960--33089
54
2.4
54
96
0
233
29
22
8
40
1.83
33082--33180
27
3.7
27
82
5
119
44
23
6
26
1.76
33068--33180
54
2.1
54
88
0
163
41
24
6
27
1.79
33082--33236
27
5.8
27
73
6
109
41
20
7
29
1.80
33226--33359
27
5.0
27
86
0
187
32
21
22
23
1.98
33564--33633
25
2.8
25
91
4
106
25
22
22
28
1.99
33564--33658
50
1.9
50
80
8
113
27
22
23
27
1.99
43335--43420
27
3.2
27
85
3
111
30
23
23
23
1.99
48375--48452
27
2.9
27
86
1
102
26
24
23
25
2.00
48494--48533
21
2.0
20
85
9
55
40
42
5
12
1.64
51051--51114
28
2.3
28
94
0
110
17
17
39
26
1.91
51430--51903
27
17.6
27
77
7
360
39
20
9
31
1.84
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
51430--51876
54
8.3
54
80
3
429
39
20
8
31
1.83
52378--52403
11
2.4
11
100
0
52
26
0
19
53
1.45
61239--61281
20
2.3
18
82
17
61
18
23
20
37
1.94
61245--61284
20
2.0
20
100
0
80
20
25
20
35
1.96

Tables:   1

The End!