Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold3540
Parameters: 2 7 7 80 10 50 1000
Length:  60714

Tables:   1   

This is table  1  of  1  ( 21 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
11248--11399
27
5.7
26
86
5
198
38
21
11
28
1.89
11248--11405
53
3.0
53
87
9
223
36
22
11
29
1.89
11251--11432
80
2.3
80
82
6
208
36
21
12
29
1.91
11906--11931
11
2.4
11
100
0
52
26
0
19
53
1.45
20761--20803
20
2.3
18
82
17
61
18
23
20
37
1.94
20767--20806
20
2.0
20
100
0
80
20
25
20
35
1.96
22577--22958
47
8.0
47
96
1
638
32
8
28
30
1.87
22928--22980
22
2.4
22
100
0
106
24
15
35
24
1.94
22834--23050
116
1.9
116
89
1
337
30
10
31
27
1.90
22950--23050
47
2.1
48
81
5
125
30
9
32
26
1.89
22881--23026
69
2.1
69
88
2
213
29
12
32
26
1.92
25109--25254
43
3.4
43
95
0
256
22
13
36
28
1.91
25236--25309
29
2.6
29
89
4
105
25
16
32
25
1.96
25697--25973
40
6.9
40
95
0
482
25
22
26
24
2.00
25618--25973
80
4.4
80
89
2
477
25
22
26
24
2.00
27303--27335
17
1.9
17
93
0
57
21
12
9
57
1.62
29704--29740
13
2.8
13
91
4
56
43
5
16
35
1.71
32005--32209
27
7.6
27
86
3
259
26
15
27
30
1.96
32006--32209
109
1.9
108
89
3
320
26
15
27
30
1.96
40080--40280
27
7.4
27
85
3
251
27
14
27
30
1.95
60195--60227
14
2.3
15
89
5
50
12
24
27
36
1.91

Tables:   1

The End!