genome.fa.s566.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold385
Parameters: 2 7 7 80 10 50 1000
Length:  58113

Tables:   1   

This is table  1  of  1  ( 38 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3311--3337	12	2.2	12	100	0	54	51	7	0	40	1.30
3786--3883	27	3.5	28	90	2	135	26	13	28	31	1.94
3814--3896	27	3.0	27	87	5	96	30	12	25	32	1.92
7540--7710	93	1.8	93	92	0	288	29	28	20	22	1.98
7532--7707	46	3.8	46	76	12	189	30	27	19	22	1.98
8131--8190	30	2.0	30	90	0	93	30	25	8	36	1.85
12345--12447	37	2.8	37	93	0	179	25	32	19	23	1.98
12587--13011	48	8.9	48	95	0	751	30	28	6	35	1.81
17016--17207	40	4.8	40	88	0	276	26	28	20	24	1.99
18487--18589	37	2.8	37	96	0	188	24	32	20	23	1.98
18730--19307	48	12.0	48	94	0	985	31	26	5	35	1.81
28081--28234	43	3.6	43	80	6	195	31	24	16	27	1.97
29002--29098	30	3.2	30	76	2	106	27	27	16	27	1.97
31494--31590	30	3.2	30	76	2	106	27	15	27	28	1.96
40416--40478	18	3.4	18	78	10	74	14	19	0	66	1.25
40495--40530	15	2.3	16	90	4	56	5	25	0	69	1.10
40886--41017	63	2.1	64	92	2	230	15	21	21	40	1.90
42716--42891	54	3.3	53	80	5	194	38	21	9	31	1.85
42723--42889	27	6.2	27	77	7	117	39	19	9	31	1.84
42869--43259	27	14.4	27	82	3	320	32	21	8	36	1.84
42842--43079	81	2.9	81	82	1	199	32	22	7	37	1.82
43064--43144	28	2.9	28	87	5	112	40	18	9	30	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43097--43176	28	2.9	27	83	3	88	40	22	11	26	1.87
43264--43754	27	18.3	27	86	2	648	35	20	19	24	1.96
43995--44046	27	2.0	26	88	3	77	17	25	21	36	1.94
43976--44129	67	2.3	67	98	0	299	17	28	22	31	1.97
44232--44415	6	29.8	6	74	17	137	18	17	14	48	1.81
44232--44299	25	2.7	25	84	8	93	19	17	14	48	1.81
44261--44336	37	2.1	37	89	0	116	18	18	15	47	1.83
44297--44361	25	2.6	25	90	0	94	18	20	15	46	1.84
44233--44398	62	2.7	62	96	0	296	18	18	15	48	1.82
44316--44407	37	2.5	37	85	0	130	18	18	15	47	1.82
44232--44415	19	9.9	18	71	17	83	18	17	14	48	1.81
48144--48315	46	3.7	46	76	14	174	21	20	28	29	1.98
48137--48308	93	1.8	93	90	2	274	22	21	27	28	1.99
53155--53252	27	3.5	28	90	2	135	26	13	28	31	1.94
53183--53265	27	3.0	27	87	5	96	30	12	25	32	1.92
53155--53266	28	4.0	27	83	6	98	28	12	25	33	1.92

Tables:   1

The End!