Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold328
Parameters: 2 7 7 80 10 50 1000
Length:  54420

Tables:   1   

This is table  1  of  1  ( 38 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3087--3132
18
2.7
17
78
18
51
43
6
0
50
1.28
9679--9758
25
3.2
25
96
3
151
36
25
7
31
1.84
16706--16779
26
2.9
26
95
2
132
37
27
4
31
1.75
18063--18118
18
3.1
18
72
12
60
37
1
3
57
1.27
18214--18268
29
1.9
29
85
3
76
34
1
5
58
1.32
18412--18442
13
2.4
13
94
0
53
25
0
3
70
1.02
18597--18655
21
2.7
23
77
17
63
32
1
8
57
1.39
18597--18661
23
2.7
25
75
20
84
33
1
9
55
1.41
18664--18703
19
2.2
19
86
4
55
27
2
0
70
1.01
18677--18728
22
2.4
22
83
0
68
23
1
1
73
1.04
18466--18742
134
2.1
131
78
9
285
28
4
6
59
1.42
19878--19920
18
2.3
19
88
11
63
62
0
9
27
1.25
19892--19932
15
2.6
17
82
17
54
65
0
4
29
1.13
20045--20109
26
2.5
26
76
14
71
60
1
0
38
1.07
20651--20696
20
2.4
19
81
3
56
39
2
58
0
1.10
21239--21296
22
2.6
22
91
0
98
13
3
53
29
1.56
21556--21587
16
2.0
16
93
0
55
37
0
9
53
1.34
21695--21758
27
2.4
27
76
5
67
31
6
3
59
1.38
21936--21985
24
2.1
24
85
3
66
32
14
4
50
1.61
25424--25474
11
4.8
11
78
9
52
3
11
1
82
0.89
26039--26081
17
2.5
17
81
7
52
16
0
4
79
0.90
26106--26224
3
39.0
3
69
15
66
33
4
4
57
1.37
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
26306--26368
20
3.0
21
76
21
60
36
3
4
55
1.37
26538--26648
25
4.5
24
75
13
91
32
9
4
54
1.52
26810--26847
20
1.9
20
94
0
67
36
2
0
60
1.11
26815--26873
14
4.2
14
74
20
52
33
0
5
61
1.18
27032--27091
28
2.1
28
85
11
79
30
6
3
60
1.39
33628--33836
72
2.9
72
90
1
312
37
18
14
28
1.91
35079--35135
26
2.2
26
90
0
87
64
3
26
5
1.30
37193--37249
3
19.0
3
100
0
114
66
0
0
33
0.92
39894--40037
26
5.7
26
90
4
224
35
22
8
33
1.84
39894--40037
51
2.8
52
93
4
242
35
22
8
33
1.84
39894--40037
77
1.9
75
90
5
227
35
22
8
33
1.84
46963--47067
25
4.2
25
97
2
201
36
24
7
31
1.84
46963--47067
51
2.1
50
98
1
201
36
24
7
31
1.84
53886--53993
26
4.2
26
90
4
166
36
27
5
30
1.80
53894--53993
51
2.0
51
93
0
173
37
28
4
31
1.75
54027--54190
82
2.0
85
89
10
261
28
20
18
32
1.96

Tables:   1

The End!