genome.fa.s570.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1938
Parameters: 2 7 7 80 10 50 1000
Length:  54229

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
761--935	46	3.8	46	78	14	207	20	20	29	29	1.98
758--928	92	1.8	93	94	1	308	21	21	29	28	1.98
2440--2545	27	4.0	27	78	6	108	35	18	22	22	1.95
2420--2541	54	2.3	53	82	1	145	36	18	22	22	1.95
2653--2785	27	4.9	27	78	9	74	27	19	19	33	1.96
2670--2785	27	4.3	27	80	6	137	25	20	18	34	1.96
4754--4813	29	2.1	29	93	0	102	33	20	10	36	1.86
5917--5970	27	2.0	27	85	0	72	51	14	7	25	1.68
5923--5983	27	2.3	27	85	2	79	54	14	8	22	1.67
6862--6938	27	2.9	27	78	7	75	36	20	19	23	1.95
7083--7226	27	5.3	27	88	0	207	26	24	18	31	1.97
20257--20667	47	8.6	49	92	2	617	33	8	29	28	1.86
20257--20667	145	2.9	145	93	1	668	33	8	29	28	1.86
23858--23957	18	5.2	18	73	14	76	11	22	2	65	1.35
29103--29233	27	4.9	27	90	3	185	30	19	6	43	1.77
29103--29233	53	2.4	54	88	3	194	30	19	6	43	1.77
29064--29484	27	15.6	27	77	7	176	38	19	8	33	1.81
29441--29492	27	1.9	27	84	7	70	40	11	11	36	1.78
29551--29633	27	3.1	27	86	5	116	33	19	25	21	1.97
30441--30615	26	6.8	26	87	3	230	25	20	22	31	1.98
30760--30851	42	2.2	42	92	0	148	29	14	21	34	1.93
30875--30948	31	2.4	31	97	0	139	29	17	25	27	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37985--38032	25	1.9	25	86	0	69	33	25	16	25	1.96
38069--38111	20	2.2	20	100	0	86	37	11	18	32	1.87
38076--38119	20	2.2	20	91	0	70	34	11	22	31	1.90
38165--38356	24	8.0	24	90	6	300	30	20	20	28	1.98
38549--38612	31	2.1	31	90	0	101	35	15	23	25	1.94
49034--49209	46	3.8	46	72	14	164	20	19	28	30	1.97
49031--49202	93	1.8	93	90	2	274	20	20	29	29	1.98

Tables:   1

The End!