Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1288
Parameters: 2 7 7 80 10 50 1000
Length:  51228

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5923--6348
40
10.7
40
93
0
721
22
26
20
30
1.98
10776--10817
20
2.1
20
100
0
84
35
23
11
28
1.91
14396--14466
22
3.3
22
74
4
81
22
35
25
16
1.95
18204--18332
27
4.8
27
84
1
161
38
18
11
31
1.87
18204--18332
54
2.4
54
89
2
197
38
18
11
31
1.87
18204--18348
54
2.7
54
85
2
157
40
17
13
29
1.87
18763--18823
27
2.2
28
88
8
99
19
13
18
49
1.79
18773--18836
27
2.4
27
83
0
83
17
15
23
43
1.87
25815--25866
15
3.2
15
73
19
50
44
0
1
53
1.11
25899--25935
16
2.3
16
86
13
58
40
0
0
59
0.97
25947--26007
22
2.9
22
83
7
65
49
0
0
50
1.00
26931--26989
21
2.8
20
74
16
57
32
13
22
32
1.92
29026--29130
48
2.2
46
83
11
140
33
25
13
27
1.93
35468--35791
48
7.0
48
76
9
296
29
23
19
27
1.98
36038--36086
9
5.1
9
85
11
62
81
4
2
12
0.91
36038--36086
19
2.5
19
87
9
64
81
4
2
12
0.91
36184--36223
11
3.6
11
83
12
55
0
52
0
47
1.00
36185--36238
22
2.3
23
84
6
65
0
48
0
51
1.00
36696--36732
3
12.3
3
100
0
74
32
0
0
67
0.91
36705--36942
127
1.9
129
83
7
315
31
5
5
56
1.47
49305--49478
70
2.5
69
84
1
215
27
14
22
35
1.94
49482--49742
70
3.7
69
85
9
352
29
16
19
34
1.94
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
50132--50324
70
2.8
69
89
9
286
29
18
18
33
1.95

Tables:   1

The End!