Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1686
Parameters: 2 7 7 80 10 50 1000
Length:  48101

Tables:   1   

This is table  1  of  1  ( 36 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
14413--14597
40
4.7
40
80
7
200
24
21
27
26
1.99
14413--14597
79
2.3
81
84
7
236
24
21
27
26
1.99
14466--14620
79
2.0
79
84
7
208
25
20
27
27
1.99
15932--15977
21
2.2
21
96
0
83
0
54
23
21
1.45
21537--21657
39
3.1
39
93
0
215
20
23
30
24
1.99
25274--25326
27
2.0
27
96
0
97
30
1
22
45
1.63
25273--25376
9
11.2
9
75
10
84
29
1
22
46
1.63
25291--25368
39
2.0
39
90
5
122
30
1
21
46
1.60
25256--25370
57
2.0
57
83
3
142
27
2
23
46
1.66
26796--26824
14
2.1
14
100
0
58
41
13
20
24
1.89
27824--27991
39
4.3
39
86
0
228
30
19
25
23
1.98
27822--27991
78
2.2
78
91
1
277
31
19
25
23
1.98
29621--29692
25
2.8
25
91
2
108
34
6
34
23
1.82
30630--30654
11
2.3
11
100
0
50
60
16
8
16
1.58
30766--30811
24
1.9
24
100
0
92
58
8
15
17
1.61
31713--31803
14
6.5
14
75
5
85
47
42
0
9
1.37
31713--31766
21
2.6
21
85
8
74
46
44
0
9
1.35
31714--31767
7
7.7
7
82
0
63
46
46
0
7
1.31
31713--31803
21
4.3
21
73
17
73
47
42
0
9
1.37
31713--31807
7
13.6
7
71
14
54
48
41
0
10
1.38
31892--31927
14
2.6
14
95
0
63
44
33
0
22
1.53
31892--31936
7
6.3
7
79
5
54
44
35
0
20
1.51
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
32038--32080
14
3.1
14
83
12
52
46
39
0
13
1.44
32042--32096
21
2.6
21
82
0
56
45
38
1
14
1.56
32456--32521
14
4.7
13
79
9
60
48
31
0
19
1.49
32494--32528
15
2.3
15
90
0
52
42
37
0
20
1.52
32446--32530
28
3.0
28
73
13
75
49
30
0
20
1.49
33384--33523
74
1.9
73
83
1
181
29
21
17
32
1.96
33512--33589
40
2.0
40
82
5
95
26
23
20
29
1.99
37383--37748
48
7.6
48
78
9
399
24
21
31
22
1.98
37378--37749
96
3.9
96
92
1
604
25
21
30
22
1.98
37383--37749
144
2.6
143
86
3
504
25
21
31
22
1.98
40762--40792
16
1.9
16
93
0
53
35
22
0
41
1.54
40759--40798
20
2.0
20
85
0
53
37
22
0
40
1.54
41038--41183
55
2.7
52
81
7
166
23
22
17
36
1.95
41038--41246
55
3.8
51
76
12
154
23
24
16
35
1.94

Tables:   1

The End!