Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold3462
Parameters: 2 7 7 80 10 50 1000
Length:  47091

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
13635--13677
20
2.2
20
95
0
77
37
0
30
32
1.58
15847--15900
20
2.7
21
88
8
85
35
31
5
27
1.80
18054--18093
21
2.0
20
90
5
62
35
0
22
42
1.54
18059--18101
21
2.1
21
83
12
54
32
2
20
44
1.65
21483--21926
35
12.6
35
84
2
408
31
24
13
30
1.94
21481--21926
173
2.5
172
81
4
498
31
24
14
30
1.94
27047--27269
39
5.7
40
85
5
260
25
27
21
25
2.00
27047--27269
79
2.8
77
81
7
259
25
27
21
25
2.00
27047--27269
118
1.9
119
82
6
283
25
27
21
25
2.00
33141--33216
39
1.9
39
84
10
102
13
11
3
71
1.28
33140--33227
39
2.3
39
80
11
101
13
10
3
72
1.23
33259--33328
24
3.1
23
80
15
67
40
0
1
58
1.07
33268--33428
20
7.7
21
67
21
81
40
0
3
55
1.20
33277--33336
21
2.9
21
82
9
70
43
0
0
56
0.99
33394--33435
18
2.2
18
87
8
57
42
0
2
54
1.13
33380--33482
52
1.9
54
84
9
140
40
0
4
54
1.22
33414--33487
23
3.2
23
81
9
80
40
0
4
55
1.19
33533--33581
23
2.0
26
88
11
77
57
2
0
40
1.10
33528--33590
23
2.8
20
76
21
63
50
3
0
46
1.17
33691--33715
10
2.5
10
100
0
50
76
0
8
16
1.02
34445--34541
43
2.3
44
89
5
146
49
13
6
30
1.66
37936--38157
40
5.7
39
84
9
258
25
22
27
24
2.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
46052--46178
39
3.3
37
82
9
157
25
20
29
25
1.99
45999--46178
40
4.7
39
79
12
194
25
21
28
25
1.99

Tables:   1

The End!