genome.fa.s587.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold3186
Parameters: 2 7 7 80 10 50 1000
Length:  46239

Tables:   1   

This is table  1  of  1  ( 30 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5109--5331	40	5.7	40	84	7	278	24	21	26	26	2.00
5116--5364	79	3.2	77	82	8	263	26	20	26	26	1.99
12240--12417	27	6.6	27	83	3	205	26	15	28	29	1.96
12241--12396	82	1.9	81	88	3	233	26	15	28	29	1.96
12237--12417	82	2.2	81	83	2	229	27	15	27	29	1.96
20289--20466	27	6.6	27	83	3	205	26	15	28	29	1.96
20290--20445	82	1.9	81	88	3	233	26	15	28	29	1.96
20286--20466	82	2.2	81	83	2	229	27	15	27	29	1.96
22652--22764	45	2.6	45	83	8	126	25	28	23	23	1.99
23081--23205	43	2.9	43	90	2	198	31	32	22	13	1.93
25061--25685	27	23.2	27	83	3	670	37	18	18	26	1.93
26134--26236	6	16.8	6	73	15	86	19	15	14	50	1.78
26106--26215	31	3.5	31	86	0	130	22	15	11	50	1.77
26106--26228	37	3.5	37	78	15	111	22	15	12	49	1.77
27656--27774	41	2.9	41	87	6	161	32	27	21	18	1.96
27670--27774	41	2.5	41	92	4	167	32	26	20	20	1.97
28679--28732	20	2.6	21	88	5	83	44	1	3	50	1.30
28802--28840	19	2.1	19	85	9	53	53	7	5	33	1.51
28935--28976	13	3.2	14	80	16	54	69	0	30	0	0.89
29819--29860	15	2.9	14	82	10	57	35	0	11	52	1.38
30242--30302	21	2.8	22	82	9	81	16	24	26	32	1.96
35020--35071	23	2.2	24	86	3	70	48	0	5	46	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35262--35300	19	2.1	19	85	9	53	53	7	5	33	1.51
35396--35430	13	2.8	13	86	4	54	68	0	31	0	0.90
36276--36317	15	2.8	15	80	20	52	35	0	14	50	1.43
36698--36758	21	2.8	22	78	9	72	14	21	27	36	1.93
37015--37039	10	2.5	10	100	0	50	36	0	24	40	1.55
40943--41116	56	3.1	56	96	2	325	45	8	22	22	1.79
40942--41157	110	2.0	111	80	8	253	50	7	21	20	1.74
45183--45353	57	3.1	56	85	9	235	47	8	22	21	1.78

Tables:   1

The End!