Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold3222
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 44881
ACGTcount: A:0.31, C:0.19, G:0.21, T:0.30
Found at i:1942 original size:39 final size:39
Alignment explanation
Indices: 1808--2061 Score: 243
Period size: 40 Copynumber: 6.5 Consensus size: 39
1798 TTGAATGCTG
* * * *
1808 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGT-ACTAAA
**
1848 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATAC-AAA
1 TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAG-TACTAAA
*
1887 TTCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAGTACTAAA
1 -TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTACTAAA
* *
1927 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAG-TACTAAA
1967 TCCGGGTTAAGTCCCGAAGGCA-TTGT--GAGTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTACTAAA
* * * ** * *
2003 ACCGGGCTATGTCCCGAAGGCATTTGAACGAGGAGCTATA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTA-CTAAA
*
2043 TCC-GGTTAAATCCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
2062 TACGTGATTT
Statistics
Matches: 181, Mismatches: 22, Indels: 23
0.80 0.10 0.10
Matches are distributed among these distances:
36 25 0.14
37 6 0.03
39 56 0.31
40 85 0.47
41 9 0.05
ACGTcount: A:0.27, C:0.21, G:0.28, T:0.24
Consensus pattern (39 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTACTAAA
Found at i:1956 original size:79 final size:78
Alignment explanation
Indices: 1808--2026 Score: 257
Period size: 79 Copynumber: 2.8 Consensus size: 78
1798 TTGAATGCTG
* * * * *
1808 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGAATATATCCGGACTAAGAT-CCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCTTTGTGC-GAGT-ACTAAATCCGGGCTAAG-TCCCGAAGGCATT
*
1872 TGTGCGAGATA-CAAA
63 CGTGCGAGATATCAAA
*
1887 TTCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAGTACTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 -TCCGGGTTAAGTCCCGAAGG-CTTTGTGCGAGTACTAAATCCGGGCTAAGTCCCGAAGGCATTC
* *
1952 GTGCGAGTTATTAAA
64 GTGCGAGATATCAAA
* * *
1967 TCCGGGTTAAGTCCCGAAGGCATTGT--GAGTACTAAAACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCTTTGTGCGAGTACTAAATCCGGGCTAAGTCCCGAAGGCATT
2027 TGAACGAGGA
Statistics
Matches: 123, Mismatches: 13, Indels: 10
0.84 0.09 0.07
Matches are distributed among these distances:
76 31 0.25
78 6 0.05
79 53 0.43
80 25 0.20
81 8 0.07
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.25
Consensus pattern (78 bp):
TCCGGGTTAAGTCCCGAAGGCTTTGTGCGAGTACTAAATCCGGGCTAAGTCCCGAAGGCATTCGT
GCGAGATATCAAA
Found at i:2046 original size:76 final size:78
Alignment explanation
Indices: 1888--2061 Score: 203
Period size: 76 Copynumber: 2.3 Consensus size: 78
1878 AGATACAAAT
* * *
1888 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAGTACTAAATCCGGGTTAAGTCCCGAAGGCATTCG
1 TCCGGGTTAAGTCCCGAAGGCCATTGT-CGAGTACTAAAACCGGGCTAAGTCCCGAAGGCATTCG
** * *
1953 TGCGAGTTATTAAA
65 AACGAGTGACTAAA
* *
1967 TCCGGGTTAAGTCCCGAAGG-CATTGT-GAGTACTAAAACCGGGCTATGTCCCGAAGGCATTTGA
1 TCCGGGTTAAGTCCCGAAGGCCATTGTCGAGTACTAAAACCGGGCTAAGTCCCGAAGGCATTCGA
*
2030 ACGAG-GAGCTATA
66 ACGAGTGA-CTAAA
*
2043 TCC-GGTTAAATCCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
2062 TACGTGATTT
Statistics
Matches: 83, Mismatches: 11, Indels: 6
0.83 0.11 0.06
Matches are distributed among these distances:
75 16 0.19
76 42 0.51
78 5 0.06
79 20 0.24
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (78 bp):
TCCGGGTTAAGTCCCGAAGGCCATTGTCGAGTACTAAAACCGGGCTAAGTCCCGAAGGCATTCGA
ACGAGTGACTAAA
Found at i:9844 original size:39 final size:40
Alignment explanation
Indices: 9709--9930 Score: 233
Period size: 40 Copynumber: 5.7 Consensus size: 40
9699 TTGAATGCTG
* * * * *
9709 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
** *
9749 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATAC-AAA
1 TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
9788 TTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAG-TACTAAA
1 -TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
9828 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
9868 TCCGGGTTAAGTCCCGAAGGCA-TTGT--GAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* * *
9905 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCATTTG
9931 AACGAGGAGC
Statistics
Matches: 156, Mismatches: 19, Indels: 16
0.82 0.10 0.08
Matches are distributed among these distances:
37 29 0.19
38 3 0.02
39 37 0.24
40 79 0.51
41 8 0.05
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:9849 original size:79 final size:78
Alignment explanation
Indices: 9709--9930 Score: 245
Period size: 79 Copynumber: 2.8 Consensus size: 78
9699 TTGAATGCTG
* * * * *
9709 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGAATATATCCGGACTAAGAT-CCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCTTTGTGC-GAGT-ACTAAATCCGGGCTAAG-TCCCGAAGGCATT
9773 TGTGCGAGATA-CAAA
63 TGTGCGAGATATCAAA
* * *
9788 TTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGTACTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 -TCCGGGTTAAGTCCCGAAGG-CTTTGTGCGAGTACTAAATCCGGGCTAAGTCCCGAAGGCATTT
* *
9853 GTGCGAGTTATTAAA
64 GTGCGAGATATCAAA
* * *
9868 TCCGGGTTAAGTCCCGAAGGCATTGT--GAGTTACTAAAACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCTTTGTGCGAG-TACTAAATCCGGGCTAAGTCCCGAAGGCATTTG
9931 AACGAGGAGC
Statistics
Matches: 122, Mismatches: 16, Indels: 11
0.82 0.11 0.07
Matches are distributed among these distances:
76 3 0.02
77 29 0.24
78 6 0.05
79 52 0.43
80 24 0.20
81 8 0.07
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (78 bp):
TCCGGGTTAAGTCCCGAAGGCTTTGTGCGAGTACTAAATCCGGGCTAAGTCCCGAAGGCATTTGT
GCGAGATATCAAA
Found at i:9948 original size:77 final size:78
Alignment explanation
Indices: 9789--9963 Score: 187
Period size: 77 Copynumber: 2.3 Consensus size: 78
9779 AGATACAAAT
* * * *
9789 TCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGTACTAAATCCGGGTTAAGTCCCGAAGGCATTCG
1 TCCGGGTTAAGTCCCGAAGGCCATTGT-CGAGTACTAAAACCGGGCTAAGTCCCGAAGGCATTCG
** * *
9854 TGCGAGTTATTAAA
65 AACGAGTGACTAAA
* *
9868 TCCGGGTTAAGTCCCGAAGG-CATTGT-GAGTTACTAAAACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCCATTGTCGAG-TACTAAAACCGGGCTAAGTCCCGAAGGCATTCG
*
9931 AACGAG-GAGCTATA
65 AACGAGTGA-CTAAA
*
9945 TCC-GGTTAAATCCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
9964 TACGTGATTT
Statistics
Matches: 82, Mismatches: 12, Indels: 7
0.81 0.12 0.07
Matches are distributed among these distances:
76 19 0.23
77 39 0.48
78 5 0.06
79 19 0.23
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (78 bp):
TCCGGGTTAAGTCCCGAAGGCCATTGTCGAGTACTAAAACCGGGCTAAGTCCCGAAGGCATTCGA
ACGAGTGACTAAA
Found at i:13461 original size:34 final size:34
Alignment explanation
Indices: 13423--13504 Score: 110
Period size: 34 Copynumber: 2.4 Consensus size: 34
13413 CTGATATGTT
* * *
13423 AATGGGCTTAGGCCCAGACTGCTACTGTTACTGA
1 AATGGGCTAAGGCCCAAACGGCTACTGTTACTGA
* *
13457 AATGGGCTCAGGCCCAAACGGCTACTGTTATTGA
1 AATGGGCTAAGGCCCAAACGGCTACTGTTACTGA
*
13491 AATAGGCTAAGGCC
1 AATGGGCTAAGGCC
13505 TAACTAATAC
Statistics
Matches: 42, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
34 42 1.00
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (34 bp):
AATGGGCTAAGGCCCAAACGGCTACTGTTACTGA
Found at i:16024 original size:27 final size:27
Alignment explanation
Indices: 15993--16046 Score: 99
Period size: 27 Copynumber: 2.0 Consensus size: 27
15983 TGAAACATGT
15993 CAACTTAATTTCCATATGCTTTATCAA
1 CAACTTAATTTCCATATGCTTTATCAA
*
16020 CAACTTAATTTTCATATGCTTTATCAA
1 CAACTTAATTTCCATATGCTTTATCAA
16047 TACCAAGAAT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.33, C:0.20, G:0.04, T:0.43
Consensus pattern (27 bp):
CAACTTAATTTCCATATGCTTTATCAA
Found at i:22285 original size:18 final size:18
Alignment explanation
Indices: 22259--22379 Score: 179
Period size: 18 Copynumber: 6.7 Consensus size: 18
22249 CTTGGCCCGT
* *
22259 TGCAGTAACAATAAACAG
1 TGCAGTAACAGTAATCAG
*
22277 TGTAGTAACAGTAATCAG
1 TGCAGTAACAGTAATCAG
22295 TGCAGTAACAGTAATCAG
1 TGCAGTAACAGTAATCAG
* *
22313 TGTAGTAGCAGTAATCAG
1 TGCAGTAACAGTAATCAG
22331 TGCAGTAACAGTAATCAG
1 TGCAGTAACAGTAATCAG
* *
22349 TGTAGTAATAGTAATCAG
1 TGCAGTAACAGTAATCAG
22367 TGCAGTAACAGTA
1 TGCAGTAACAGTA
22380 TACAAGCCCT
Statistics
Matches: 91, Mismatches: 12, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 91 1.00
ACGTcount: A:0.40, C:0.13, G:0.22, T:0.25
Consensus pattern (18 bp):
TGCAGTAACAGTAATCAG
Found at i:22302 original size:12 final size:13
Alignment explanation
Indices: 22280--22343 Score: 50
Period size: 12 Copynumber: 5.3 Consensus size: 13
22270 TAAACAGTGT
*
22280 AGTAACAGTAATC
1 AGTAGCAGTAATC
22293 AGT-GCAGTAA-C
1 AGTAGCAGTAATC
* *
22304 AGTAATCAGT-GT-
1 AGT-AGCAGTAATC
22316 AGTAGCAGTAATC
1 AGTAGCAGTAATC
22329 AGT-GCAGTAA-C
1 AGTAGCAGTAATC
22340 AGTA
1 AGTA
22344 ATCAGTGTAG
Statistics
Matches: 40, Mismatches: 5, Indels: 13
0.69 0.09 0.22
Matches are distributed among these distances:
11 13 0.32
12 17 0.43
13 10 0.25
ACGTcount: A:0.39, C:0.14, G:0.23, T:0.23
Consensus pattern (13 bp):
AGTAGCAGTAATC
Found at i:22314 original size:36 final size:36
Alignment explanation
Indices: 22259--22379 Score: 206
Period size: 36 Copynumber: 3.4 Consensus size: 36
22249 CTTGGCCCGT
* *
22259 TGCAGTAACAATAAACAGTGTAGTAACAGTAATCAG
1 TGCAGTAACAGTAATCAGTGTAGTAACAGTAATCAG
*
22295 TGCAGTAACAGTAATCAGTGTAGTAGCAGTAATCAG
1 TGCAGTAACAGTAATCAGTGTAGTAACAGTAATCAG
*
22331 TGCAGTAACAGTAATCAGTGTAGTAATAGTAATCAG
1 TGCAGTAACAGTAATCAGTGTAGTAACAGTAATCAG
22367 TGCAGTAACAGTA
1 TGCAGTAACAGTA
22380 TACAAGCCCT
Statistics
Matches: 80, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
36 80 1.00
ACGTcount: A:0.40, C:0.13, G:0.22, T:0.25
Consensus pattern (36 bp):
TGCAGTAACAGTAATCAGTGTAGTAACAGTAATCAG
Found at i:22734 original size:27 final size:26
Alignment explanation
Indices: 22699--22979 Score: 282
Period size: 27 Copynumber: 10.6 Consensus size: 26
22689 TACATCATAT
* * *
22699 AGGGAAAAACAATCATCTTACCATATA
1 AGGGCAAAACAGTCATTTTACC-TATA
22726 AGGGCAAAACAGTCATTTTATCAC-AT-
1 AGGGCAAAACAGTCATTTTA-C-CTATA
* *
22752 AGGGCAAAATAGTCA-TTTATCCCATA
1 AGGGCAAAACAGTCATTTTA-CCTATA
** *
22778 AAAGCAAAACAATCATTTTACCTCATA
1 AGGGCAAAACAGTCATTTTACCT-ATA
*
22805 AGGGCAAAACAGTCATTTTACC-ACA
1 AGGGCAAAACAGTCATTTTACCTATA
* *
22830 AAGGCAAAACAGTCATTTTACCTCATG
1 AGGGCAAAACAGTCATTTTACCT-ATA
* *
22857 AGGGCAAAATAGTCATTTTACCTCATG
1 AGGGCAAAACAGTCATTTTACCT-ATA
* *
22884 GGGGCAAATCAGTCATTTTACCTCATA
1 AGGGCAAAACAGTCATTTTACCT-ATA
*
22911 AGGGCAAAACAGTCATTTTACCCCATA
1 AGGGCAAAACAGTCATTTTA-CCTATA
*
22938 AGGGCAAAACAGTCATTTTACCTCATG
1 AGGGCAAAACAGTCATTTTACCT-ATA
*
22965 AGGGCAAAGCAGTCA
1 AGGGCAAAACAGTCA
22980 AACAATGAAA
Statistics
Matches: 216, Mismatches: 28, Indels: 20
0.82 0.11 0.08
Matches are distributed among these distances:
24 1 0.00
25 31 0.14
26 29 0.13
27 151 0.70
28 3 0.01
29 1 0.00
ACGTcount: A:0.38, C:0.21, G:0.16, T:0.25
Consensus pattern (26 bp):
AGGGCAAAACAGTCATTTTACCTATA
Found at i:22864 original size:79 final size:79
Alignment explanation
Indices: 22694--22979 Score: 344
Period size: 79 Copynumber: 3.6 Consensus size: 79
22684 ATATATACAT
* * * *
22694 CATATAGGGAAAAACAATCATCTTACCAT-ATAAGGGCAAAACAGTCATTTTATCACATAGGGCA
1 CATA-AGGGCAAAACAATCATTTTACC-TCATAAGGGCAAAACAGTCATTTTACCACATAAGGCA
*
22758 AAATAGTCA-TTTATCC
64 AAACAGTCATTTTA-CC
**
22774 CATAAAAGCAAAACAATCATTTTACCTCATAAGGGCAAAACAGTCATTTTACCACA-AAGGCAAA
1 CATAAGGGCAAAACAATCATTTTACCTCATAAGGGCAAAACAGTCATTTTACCACATAAGGCAAA
22838 ACAGTCATTTTACC
66 ACAGTCATTTTACC
* * * ** * *
22852 TCATGAGGGCAAAATAGTCATTTTACCTCATGGGGGCAAATCAGTCATTTTACCTCATAAGGGCA
1 -CATAAGGGCAAAACAATCATTTTACCTCATAAGGGCAAAACAGTCATTTTACCACATAA-GGCA
22917 AAACAGTCATTTTACCC
64 AAACAGTCATTTTA-CC
* * *
22934 CATAAGGGCAAAACAGTCATTTTACCTCATGAGGGCAAAGCAGTCA
1 CATAAGGGCAAAACAATCATTTTACCTCATAAGGGCAAAACAGTCA
22980 AACAATGAAA
Statistics
Matches: 180, Mismatches: 20, Indels: 11
0.85 0.09 0.05
Matches are distributed among these distances:
78 16 0.09
79 96 0.53
80 6 0.03
81 60 0.33
82 2 0.01
ACGTcount: A:0.38, C:0.21, G:0.15, T:0.25
Consensus pattern (79 bp):
CATAAGGGCAAAACAATCATTTTACCTCATAAGGGCAAAACAGTCATTTTACCACATAAGGCAAA
ACAGTCATTTTACC
Found at i:22907 original size:54 final size:53
Alignment explanation
Indices: 22693--22979 Score: 339
Period size: 54 Copynumber: 5.4 Consensus size: 53
22683 TATATATACA
* * * * *
22693 TCATATAGGGAAAAACAATCATCTTACCATATAAGGGCAAAACAGTCATTTTATC
1 TCATA-AGGGCAAAACAGTCATTTTACC-CATAAGGGCAAAACAGTCATTTTACC
* * ** *
22748 ACAT-AGGGCAAAATAGTCA-TTTATCCCATAAAAGCAAAACAATCATTTTACC
1 TCATAAGGGCAAAACAGTCATTTTA-CCCATAAGGGCAAAACAGTCATTTTACC
22800 TCATAAGGGCAAAACAGTCATTTTACCACA-AA-GGCAAAACAGTCATTTTACC
1 TCATAAGGGCAAAACAGTCATTTTACC-CATAAGGGCAAAACAGTCATTTTACC
* * ** *
22852 TCATGAGGGCAAAATAGTCATTTTACCTCATGGGGGCAAATCAGTCATTTTACC
1 TCATAAGGGCAAAACAGTCATTTTACC-CATAAGGGCAAAACAGTCATTTTACC
22906 TCATAAGGGCAAAACAGTCATTTTACCCCATAAGGGCAAAACAGTCATTTTACC
1 TCATAAGGGCAAAACAGTCATTTTA-CCCATAAGGGCAAAACAGTCATTTTACC
* *
22960 TCATGAGGGCAAAGCAGTCA
1 TCATAAGGGCAAAACAGTCA
22980 AACAATGAAA
Statistics
Matches: 198, Mismatches: 27, Indels: 15
0.82 0.11 0.06
Matches are distributed among these distances:
52 72 0.36
53 32 0.16
54 89 0.45
55 5 0.03
ACGTcount: A:0.38, C:0.21, G:0.15, T:0.25
Consensus pattern (53 bp):
TCATAAGGGCAAAACAGTCATTTTACCCATAAGGGCAAAACAGTCATTTTACC
Found at i:30761 original size:28 final size:28
Alignment explanation
Indices: 30723--30875 Score: 238
Period size: 28 Copynumber: 5.5 Consensus size: 28
30713 TAAATTGTAC
30723 AGCACTAAGTGTGCGAGCTTGATTATGT
1 AGCACTAAGTGTGCGAGCTTGATTATGT
30751 AGCACTAAGTGTGCGAGCTTGATTATGT
1 AGCACTAAGTGTGCGAGCTTGATTATGT
* *
30779 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGAGCTTGATTATGT
* *
30807 AGCACTAAGTGTGCAAGTTTGATTATGT
1 AGCACTAAGTGTGCGAGCTTGATTATGT
*
30835 AGCACTAAGTGTGC-AG-TTGATTATAT
1 AGCACTAAGTGTGCGAGCTTGATTATGT
*
30861 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
30876 GACTTAATAT
Statistics
Matches: 118, Mismatches: 6, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
26 22 0.19
27 2 0.02
28 94 0.80
ACGTcount: A:0.27, C:0.13, G:0.27, T:0.33
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGCTTGATTATGT
Found at i:30840 original size:84 final size:83
Alignment explanation
Indices: 30698--30875 Score: 259
Period size: 84 Copynumber: 2.1 Consensus size: 83
30688 GAGATTGGCG
* * *
30698 CTAAGTGTGCGGGTTTAAATTGTACAGCACTAAGTGTGCGAGCTTGATTATGTAGCACTAAGTGT
1 CTAAGTGTGCGAGTTTAAATTATACAGCACTAAGTGTGCAAGCTTGATTATGTAGCACTAAGTGT
*
30763 GCGAGCTTGATTATGTAGCA
66 GC-AG-TTGATTATATAGCA
* * *
30783 CTAAGTGTGCGAGTTT-GATTATATAGCACTAAGTGTGCAAGTTTGATTATGTAGCACTAAGTGT
1 CTAAGTGTGCGAGTTTAAATTATACAGCACTAAGTGTGCAAGCTTGATTATGTAGCACTAAGTGT
30847 GCAGTTGATTATATAGCA
66 GCAGTTGATTATATAGCA
*
30865 CTGAGTGTGCG
1 CTAAGTGTGCG
30876 GACTTAATAT
Statistics
Matches: 85, Mismatches: 8, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
82 23 0.27
83 2 0.02
84 45 0.53
85 15 0.18
ACGTcount: A:0.26, C:0.13, G:0.28, T:0.33
Consensus pattern (83 bp):
CTAAGTGTGCGAGTTTAAATTATACAGCACTAAGTGTGCAAGCTTGATTATGTAGCACTAAGTGT
GCAGTTGATTATATAGCA
Done.