Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold1572
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 42964
ACGTcount: A:0.31, C:0.17, G:0.20, T:0.31
Found at i:6167 original size:46 final size:46
Alignment explanation
Indices: 6100--6272 Score: 188
Period size: 46 Copynumber: 3.8 Consensus size: 46
6090 TGTAACCCGC
*
6100 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGTGTTCACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGATGTTCACAT
* * **
6146 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCT-AGTT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGATGTTCACAT
* * * ** *
6191 ACATTCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCA-TAAGCGAACTCGGACTCAACTCAACGAGCTCGGATGTTCACAT
** * *
6237 CCATAAATGAACTCGGACTCAACTCAATGAGTTCGG
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGG
6273 TATGCTCAAC
Statistics
Matches: 105, Mismatches: 19, Indels: 6
0.81 0.15 0.05
Matches are distributed among these distances:
45 35 0.33
46 70 0.67
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.21
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGATGTTCACAT
Found at i:6216 original size:91 final size:92
Alignment explanation
Indices: 6107--6278 Score: 265
Period size: 91 Copynumber: 1.9 Consensus size: 92
6097 CGCCCATAAG
*** *
6107 CGAACTCGGACTCAACTCAACGAGCTCGGGTGTTCACATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCACATCCATAAATGAACTCGGACTCAACTCA
6172 ACGAGCTCGG-ATGCTAGTTACATTCA
66 ACGAGCTCGGTATGCTAGTTACATTCA
* *
6198 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCACATCCATAAATGAACTCGGACTCAACTCA
* *
6263 ATGAGTTCGGTATGCT
66 ACGAGCTCGGTATGCT
6279 CAACCATCGT
Statistics
Matches: 72, Mismatches: 8, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
91 67 0.93
92 5 0.07
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.23
Consensus pattern (92 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCACATCCATAAATGAACTCGGACTCAACTCA
ACGAGCTCGGTATGCTAGTTACATTCA
Found at i:9412 original size:27 final size:27
Alignment explanation
Indices: 9381--9559 Score: 207
Period size: 27 Copynumber: 6.6 Consensus size: 27
9371 TAAATTGTAC
9381 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
9408 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
9434 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
9462 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
9490 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
9517 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
9544 AGCACTGAGTGTGCGA
1 AGCACTAAGTGTGCGA
9560 CTCAATATAC
Statistics
Matches: 130, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 107 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:9495 original size:82 final size:81
Alignment explanation
Indices: 9382--9537 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
9372 AAATTGTACA
* *
9382 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
9446 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
9463 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
9528 TGCGAGTTGA
65 TGCGAATTGA
9538 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:9549 original size:82 final size:81
Alignment explanation
Indices: 9378--9559 Score: 231
Period size: 82 Copynumber: 2.2 Consensus size: 81
9368 GATTAAATTG
* *
9378 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
9443 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
9459 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
9523 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
9541 TATAGCACTGAGTGTGCGA
1 TACAGCACTAAGTGTGCGA
9560 CTCAATATAC
Statistics
Matches: 85, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 67 0.79
ACGTcount: A:0.27, C:0.15, G:0.27, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:14383 original size:18 final size:18
Alignment explanation
Indices: 14347--14404 Score: 64
Period size: 18 Copynumber: 3.2 Consensus size: 18
14337 TAACACCCTG
* *
14347 ATTTTTGAGATTTTCGTA
1 ATTTTTGAGAATTTGGTA
14365 ATTTTTGAGAATTTGGTAAA
1 ATTTTTGAGAATTTGGT--A
*
14385 ATTTTT-AAAATTTGGTA
1 ATTTTTGAGAATTTGGTA
14402 ATT
1 ATT
14405 GGTTGTGAAA
Statistics
Matches: 35, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
17 4 0.11
18 15 0.43
19 9 0.26
20 7 0.20
ACGTcount: A:0.31, C:0.02, G:0.16, T:0.52
Consensus pattern (18 bp):
ATTTTTGAGAATTTGGTA
Found at i:14389 original size:19 final size:19
Alignment explanation
Indices: 14349--14402 Score: 56
Period size: 19 Copynumber: 2.9 Consensus size: 19
14339 ACACCCTGAT
* * *
14349 TTTTGAGATTTTCGT-AAT
1 TTTTGAGAATTTGGTAAAA
14367 TTTTGAGAATTTGGTAAAA
1 TTTTGAGAATTTGGTAAAA
* *
14386 TTTTTAAAATTTGGTAA
1 TTTTGAGAATTTGGTAA
14403 TTGGTTGTGA
Statistics
Matches: 30, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
18 13 0.43
19 17 0.57
ACGTcount: A:0.31, C:0.02, G:0.17, T:0.50
Consensus pattern (19 bp):
TTTTGAGAATTTGGTAAAA
Found at i:16029 original size:10 final size:10
Alignment explanation
Indices: 16008--16043 Score: 56
Period size: 10 Copynumber: 3.6 Consensus size: 10
15998 CATGAGATTT
16008 TGATAT-ACA
1 TGATATGACA
16017 TGATATGACA
1 TGATATGACA
16027 TGATATGCACA
1 TGATATG-ACA
16038 TGATAT
1 TGATAT
16044 ATTATGAGAT
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
9 6 0.24
10 10 0.40
11 9 0.36
ACGTcount: A:0.39, C:0.11, G:0.17, T:0.33
Consensus pattern (10 bp):
TGATATGACA
Found at i:16040 original size:11 final size:11
Alignment explanation
Indices: 16014--16078 Score: 55
Period size: 11 Copynumber: 6.1 Consensus size: 11
16004 ATTTTGATAT
16014 ACATGATATG-
1 ACATGATATGC
16024 ACATGATATGC
1 ACATGATATGC
16035 ACATGATAT--
1 ACATGATATGC
* *
16044 ATTATGAGATGC
1 A-CATGATATGC
*
16056 ACATGATATAC
1 ACATGATATGC
* *
16067 TCATTATATGC
1 ACATGATATGC
16078 A
1 A
16079 TGGGTTGGGT
Statistics
Matches: 42, Mismatches: 9, Indels: 7
0.72 0.16 0.12
Matches are distributed among these distances:
9 1 0.02
10 16 0.38
11 24 0.57
12 1 0.02
ACGTcount: A:0.38, C:0.14, G:0.15, T:0.32
Consensus pattern (11 bp):
ACATGATATGC
Found at i:16040 original size:21 final size:21
Alignment explanation
Indices: 16014--16070 Score: 71
Period size: 21 Copynumber: 2.7 Consensus size: 21
16004 ATTTTGATAT
*
16014 ACATGATATGA-CATGATATGC
1 ACATGATAT-ATCATGAGATGC
*
16035 ACATGATATATTATGAGATGC
1 ACATGATATATCATGAGATGC
16056 ACATGATATACTCAT
1 ACATGATATA-TCAT
16071 TATATGCATG
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
20 1 0.03
21 27 0.87
22 3 0.10
ACGTcount: A:0.39, C:0.14, G:0.16, T:0.32
Consensus pattern (21 bp):
ACATGATATATCATGAGATGC
Found at i:16733 original size:18 final size:18
Alignment explanation
Indices: 16710--16744 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
16700 ATTTAGGGCG
*
16710 CGTTTTCAAAATGACACT
1 CGTTTTCAAAATAACACT
16728 CGTTTTCAAAATAACAC
1 CGTTTTCAAAATAACAC
16745 AGCGATATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.37, C:0.23, G:0.09, T:0.31
Consensus pattern (18 bp):
CGTTTTCAAAATAACACT
Found at i:23767 original size:10 final size:10
Alignment explanation
Indices: 23746--23812 Score: 82
Period size: 10 Copynumber: 6.6 Consensus size: 10
23736 CATGAGATTT
23746 TGATAT-ACA
1 TGATATGACA
23755 TGATATGACA
1 TGATATGACA
23765 TGATATGACA
1 TGATATGACA
23775 TGATATGCACA
1 TGATATG-ACA
**
23786 TGATATGTTA
1 TGATATGACA
*
23796 TGAGATGCACA
1 TGATATG-ACA
23807 TGATAT
1 TGATAT
23813 ACTCATTATA
Statistics
Matches: 49, Mismatches: 6, Indels: 4
0.83 0.10 0.07
Matches are distributed among these distances:
9 6 0.12
10 27 0.55
11 16 0.33
ACGTcount: A:0.37, C:0.10, G:0.19, T:0.33
Consensus pattern (10 bp):
TGATATGACA
Found at i:23788 original size:21 final size:21
Alignment explanation
Indices: 23746--23812 Score: 93
Period size: 21 Copynumber: 3.3 Consensus size: 21
23736 CATGAGATTT
23746 TGATAT-ACATGATATG-ACA
1 TGATATGACATGATATGCACA
23765 TGATATGACATGATATGCACA
1 TGATATGACATGATATGCACA
** *
23786 TGATATGTTATGAGATGCACA
1 TGATATGACATGATATGCACA
23807 TGATAT
1 TGATAT
23813 ACTCATTATA
Statistics
Matches: 43, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
19 6 0.14
20 10 0.23
21 27 0.63
ACGTcount: A:0.37, C:0.10, G:0.19, T:0.33
Consensus pattern (21 bp):
TGATATGACATGATATGCACA
Found at i:23824 original size:32 final size:31
Alignment explanation
Indices: 23752--23824 Score: 83
Period size: 32 Copynumber: 2.3 Consensus size: 31
23742 ATTTTGATAT
** * *
23752 ACATGATATGACATGATATGACATGATATGC
1 ACATGATATGTTATGAGATGACATGATATAC
23783 ACATGATATGTTATGAGATGCACATGATATAC
1 ACATGATATGTTATGAGATG-ACATGATATAC
* *
23815 TCATTATATG
1 ACATGATATG
23825 CATGGGTTGG
Statistics
Matches: 35, Mismatches: 6, Indels: 1
0.83 0.14 0.02
Matches are distributed among these distances:
31 17 0.49
32 18 0.51
ACGTcount: A:0.37, C:0.12, G:0.18, T:0.33
Consensus pattern (31 bp):
ACATGATATGTTATGAGATGACATGATATAC
Found at i:26513 original size:45 final size:45
Alignment explanation
Indices: 26409--26625 Score: 300
Period size: 45 Copynumber: 4.9 Consensus size: 45
26399 TTTTATCAAA
* * *
26409 TCACCGGCATT-TAGCCTGCTAGGTTTTAAA--CCCG-ATA-TCATT
1 TCACCGGCATTATAGCCTGCTAGG-CTCAAAGGCCCGAATAGT-ATC
* *
26451 TCACTGGCATTATAGCCTGCTAGGCTCAAAGGCCTGAATAGTATC
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATC
*
26496 TCACCAGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATC
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATC
* * *
26541 TCACCGGCATTATAGCTTGCTAAGCTCAAAGGCCCGAATAGCATC
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATC
26586 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATA
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATA
26626 ATACTGTGTG
Statistics
Matches: 156, Mismatches: 14, Indels: 7
0.88 0.08 0.04
Matches are distributed among these distances:
42 14 0.09
43 12 0.08
44 3 0.02
45 126 0.81
46 1 0.01
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.25
Consensus pattern (45 bp):
TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATC
Found at i:29073 original size:22 final size:22
Alignment explanation
Indices: 29048--29090 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
29038 TTTCCAAACA
29048 ATAATAATAAAATAGTAGCAAC
1 ATAATAATAAAATAGTAGCAAC
** *
29070 ATAATGGTAAAATGGTAGCAA
1 ATAATAATAAAATAGTAGCAA
29091 AATAGGGAGA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.53, C:0.07, G:0.16, T:0.23
Consensus pattern (22 bp):
ATAATAATAAAATAGTAGCAAC
Found at i:29709 original size:45 final size:45
Alignment explanation
Indices: 29658--29797 Score: 149
Period size: 45 Copynumber: 3.1 Consensus size: 45
29648 AAAAACGAAA
*
29658 AAGACCATAGTTGAAAGACACTATGAC-ACTAT-ATCTGAAATGAAT
1 AAGACCATAGTTGAAAGACACTATGACAAC-ATGA-CGGAAATGAAT
* * * *
29703 AGGACCATACTTGAAAGACATTATGGCAACATGACGGAAATGAAT
1 AAGACCATAGTTGAAAGACACTATGACAACATGACGGAAATGAAT
* * * * * *
29748 AAGACCATAGTTGAAAGGCACTATGGCATCATGTCGAAAATAAAT
1 AAGACCATAGTTGAAAGACACTATGACAACATGACGGAAATGAAT
29793 AAGAC
1 AAGAC
29798 TGTGGCTGAA
Statistics
Matches: 80, Mismatches: 13, Indels: 4
0.82 0.13 0.04
Matches are distributed among these distances:
45 77 0.96
46 3 0.04
ACGTcount: A:0.44, C:0.16, G:0.19, T:0.21
Consensus pattern (45 bp):
AAGACCATAGTTGAAAGACACTATGACAACATGACGGAAATGAAT
Found at i:31200 original size:21 final size:21
Alignment explanation
Indices: 31174--31217 Score: 70
Period size: 21 Copynumber: 2.1 Consensus size: 21
31164 CAATTTTAGA
31174 ATTTGATGATGAGATTGAGTT
1 ATTTGATGATGAGATTGAGTT
**
31195 ATTTGATGATGATTTTGAGTT
1 ATTTGATGATGAGATTGAGTT
31216 AT
1 AT
31218 GTCATTATTG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.27, C:0.00, G:0.25, T:0.48
Consensus pattern (21 bp):
ATTTGATGATGAGATTGAGTT
Found at i:33735 original size:46 final size:44
Alignment explanation
Indices: 33667--33834 Score: 176
Period size: 46 Copynumber: 3.7 Consensus size: 44
33657 ATGGTTGAGC
*
33667 ATCCGAACTCATTGAGTTGAGTCCGAGTTCATTTATGGATGCGA
1 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGA
* ** * *
33711 ATGTCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAAATGTAACTAG-GC
1 A--TCCGAACTCGTTGAGTTGAGTCCGAGTTCAT-TTATG-GA-T-GCGA
* *
33760 ATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGA
1 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGA
* *
33804 ACACCGAGCTCGTTGAGTTGAGTCCGAGTTC
1 A-TCCGAACTCGTTGAGTTGAGTCCGAGTTC
33835 GCTTATGGGC
Statistics
Matches: 102, Mismatches: 14, Indels: 15
0.78 0.11 0.11
Matches are distributed among these distances:
43 1 0.01
44 4 0.04
45 29 0.28
46 32 0.31
47 31 0.30
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.23, C:0.20, G:0.28, T:0.29
Consensus pattern (44 bp):
ATCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGA
Found at i:33826 original size:45 final size:45
Alignment explanation
Indices: 33669--33842 Score: 172
Period size: 45 Copynumber: 3.8 Consensus size: 45
33659 GGTTGAGCAT
* * **
33669 CCGAACTCATTGAGTTGAGTCCGAGTTCATTTATGGATGCGAATGT
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-CA
* * * * * *
33715 CCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGAAATGTA-ACTAGGCA
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACT--TATGGATGCGA-ACA
*
33761 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACA
1 -CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACA
* *
33807 CCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
33843 GCGGGTTACA
Statistics
Matches: 105, Mismatches: 17, Indels: 13
0.78 0.13 0.10
Matches are distributed among these distances:
45 36 0.34
46 35 0.33
47 33 0.31
48 1 0.01
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.29
Consensus pattern (45 bp):
CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACA
Found at i:41247 original size:46 final size:46
Alignment explanation
Indices: 41197--41372 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
41187 TGGTTGAGCA
41197 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
41243 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
41288 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
41336 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
41373 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 63 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:41353 original size:93 final size:93
Alignment explanation
Indices: 41194--41365 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
41184 GGATGGTTGA
* *
41194 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
41259 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
41287 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
41352 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
41366 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Done.