Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A06
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 115140250
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2234201 characters in sequence are not A, C, G, or T
File 100 of 345
Found at i:32964426 original size:20 final size:20
Alignment explanation
Indices: 32964401--32964465 Score: 73
Period size: 20 Copynumber: 3.4 Consensus size: 20
32964391 ATACAAGATA
32964401 AATATTAAATCTATTAAAAT
1 AATATTAAATCTATTAAAAT
* **
32964421 AATATT--AT-TTTTGGAAT
1 AATATTAAATCTATTAAAAT
32964438 AAATATTAAATCTATTAAAAT
1 -AATATTAAATCTATTAAAAT
32964459 AATATTA
1 AATATTA
32964466 TTTTTGGAAT
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
17 6 0.17
18 8 0.23
20 15 0.43
21 6 0.17
ACGTcount: A:0.51, C:0.03, G:0.03, T:0.43
Consensus pattern (20 bp):
AATATTAAATCTATTAAAAT
Found at i:32964438 original size:17 final size:17
Alignment explanation
Indices: 32964418--32964476 Score: 55
Period size: 17 Copynumber: 3.2 Consensus size: 17
32964408 AATCTATTAA
32964418 AATAATATTATTTTTGG
1 AATAATATTATTTTTGG
* **
32964435 AATAAATATTAAATCTATTAA
1 AAT-AATATT--AT-TTTTGG
32964456 AATAATATTATTTTTGG
1 AATAATATTATTTTTGG
32964473 AATA
1 AATA
32964477 GTTAATCTGA
Statistics
Matches: 32, Mismatches: 6, Indels: 8
0.70 0.13 0.17
Matches are distributed among these distances:
17 10 0.31
18 8 0.25
20 8 0.25
21 6 0.19
ACGTcount: A:0.46, C:0.02, G:0.07, T:0.46
Consensus pattern (17 bp):
AATAATATTATTTTTGG
Found at i:32964440 original size:38 final size:38
Alignment explanation
Indices: 32964398--32964476 Score: 158
Period size: 38 Copynumber: 2.1 Consensus size: 38
32964388 TATATACAAG
32964398 ATAAATATTAAATCTATTAAAATAATATTATTTTTGGA
1 ATAAATATTAAATCTATTAAAATAATATTATTTTTGGA
32964436 ATAAATATTAAATCTATTAAAATAATATTATTTTTGGA
1 ATAAATATTAAATCTATTAAAATAATATTATTTTTGGA
32964474 ATA
1 ATA
32964477 GTTAATCTGA
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 41 1.00
ACGTcount: A:0.48, C:0.03, G:0.05, T:0.44
Consensus pattern (38 bp):
ATAAATATTAAATCTATTAAAATAATATTATTTTTGGA
Found at i:32966652 original size:39 final size:39
Alignment explanation
Indices: 32966598--32966830 Score: 394
Period size: 39 Copynumber: 6.0 Consensus size: 39
32966588 AAGACACTGA
*
32966598 AAATGTATCCGGGCTAAAGTCCCGTAGGCTTCGTGCTGG
1 AAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGG
*
32966637 AAATGAATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGG
1 AAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGG
*
32966676 AAATATATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGG
1 AAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGG
* *
32966715 TAATGTATCCGGACTAAAGTCCCGCAGGCTTCGTGCTGG
1 AAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGG
*
32966754 AAATGTATCCGGGCCAAAGTCCCGCAGGCTTCGTGCTGG
1 AAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGG
* *
32966793 AAATGTATCCGGGTTAAAGTCCCGCAGGCTTTGTGCTG
1 AAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTG
32966831 ATAATATAAT
Statistics
Matches: 181, Mismatches: 13, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
39 181 1.00
ACGTcount: A:0.21, C:0.25, G:0.30, T:0.24
Consensus pattern (39 bp):
AAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGG
Found at i:32969381 original size:14 final size:14
Alignment explanation
Indices: 32969362--32969389 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
32969352 ATGTATCTGA
32969362 CTGTATATGAAATT
1 CTGTATATGAAATT
32969376 CTGTATATGAAATT
1 CTGTATATGAAATT
32969390 TTGTGTTATG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.36, C:0.07, G:0.14, T:0.43
Consensus pattern (14 bp):
CTGTATATGAAATT
Found at i:32974844 original size:20 final size:20
Alignment explanation
Indices: 32974819--32974870 Score: 104
Period size: 20 Copynumber: 2.6 Consensus size: 20
32974809 CGGGTAAGGG
32974819 ACACGGGCGTGTCCCTAAGC
1 ACACGGGCGTGTCCCTAAGC
32974839 ACACGGGCGTGTCCCTAAGC
1 ACACGGGCGTGTCCCTAAGC
32974859 ACACGGGCGTGT
1 ACACGGGCGTGT
32974871 GCTTTTCCTC
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 32 1.00
ACGTcount: A:0.19, C:0.33, G:0.33, T:0.15
Consensus pattern (20 bp):
ACACGGGCGTGTCCCTAAGC
Found at i:32985933 original size:46 final size:45
Alignment explanation
Indices: 32985781--32985950 Score: 158
Period size: 46 Copynumber: 3.8 Consensus size: 45
32985771 TGTAACCCGC
*
32985781 CCATAAGCGAACTCGGACT---CTCAACGAGCTCGG-CGTTCCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGACATTCCAT
* *
32985822 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGA---C-A-TTCCAT
* * *
32985872 --TTCA-CGAACTC-GACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGACATTC-CAT
* *
32985914 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGA
32985951 TGCTCAACCA
Statistics
Matches: 104, Mismatches: 11, Indels: 23
0.75 0.08 0.17
Matches are distributed among these distances:
41 20 0.19
42 4 0.04
43 1 0.01
44 16 0.15
45 6 0.06
46 43 0.41
47 6 0.06
48 3 0.03
50 5 0.05
ACGTcount: A:0.29, C:0.30, G:0.20, T:0.21
Consensus pattern (45 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGACATTCCAT
Found at i:32993419 original size:92 final size:91
Alignment explanation
Indices: 32993309--32993475 Score: 289
Period size: 92 Copynumber: 1.8 Consensus size: 91
32993299 CCGCCCATAG
* *
32993309 CGAACTCGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 CGAACTCGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
32993374 CGAGCTCGGAGCCTAGTTACATTTCA
66 CGAGCTCGGAGCCTAGTTACATTTCA
*
32993400 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTC-GACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
*
32993465 ACGAGTTCGGA
65 ACGAGCTCGGA
32993476 TGCTCAACCA
Statistics
Matches: 71, Mismatches: 4, Indels: 1
0.93 0.05 0.01
Matches are distributed among these distances:
91 7 0.10
92 64 0.90
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (91 bp):
CGAACTCGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGAGCCTAGTTACATTTCA
Found at i:32993475 original size:46 final size:46
Alignment explanation
Indices: 32993310--32993475 Score: 189
Period size: 46 Copynumber: 3.6 Consensus size: 46
32993300 CGCCCATAGC
* *
32993310 GAACTC-GACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGT
* * * *
32993355 GAACTCGGACTCAACTCAACGAGCTCGGAGCCTAGTT-ACAT--TTCA-C
1 GAACTCGGACTCAACTCAACGAGCTCGGA--C-A-TTCGCATCCATAAGT
*
32993401 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGT
*
32993447 GAACTCGGACTCAACTCAACGAGTTCGGA
1 GAACTCGGACTCAACTCAACGAGCTCGGA
32993476 TGCTCAACCA
Statistics
Matches: 101, Mismatches: 11, Indels: 17
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 1 0.01
45 8 0.08
46 78 0.77
47 2 0.02
48 1 0.01
49 3 0.03
50 2 0.02
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (46 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGT
Found at i:32996329 original size:6 final size:6
Alignment explanation
Indices: 32996318--32996346 Score: 58
Period size: 6 Copynumber: 4.8 Consensus size: 6
32996308 GATTTTTAAA
32996318 ATTATC ATTATC ATTATC ATTATC ATTAT
1 ATTATC ATTATC ATTATC ATTATC ATTAT
32996347 AATTTAATTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.34, C:0.14, G:0.00, T:0.52
Consensus pattern (6 bp):
ATTATC
Found at i:32997623 original size:22 final size:21
Alignment explanation
Indices: 32997587--32997639 Score: 63
Period size: 20 Copynumber: 2.4 Consensus size: 21
32997577 AATTTAAACT
32997587 AAAAATGTATCAAACTTAATATAA
1 AAAAAT-TATCAAAC-T-ATATAA
32997611 AAAAATTAT-AAACTATATAA
1 AAAAATTATCAAACTATATAA
32997631 AAGAAATTA
1 AA-AAATTA
32997640 AGCAAAAAAA
Statistics
Matches: 28, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
20 8 0.29
21 7 0.25
22 4 0.14
23 3 0.11
24 6 0.21
ACGTcount: A:0.62, C:0.06, G:0.04, T:0.28
Consensus pattern (21 bp):
AAAAATTATCAAACTATATAA
Found at i:32999671 original size:8 final size:8
Alignment explanation
Indices: 32999658--32999696 Score: 69
Period size: 8 Copynumber: 4.8 Consensus size: 8
32999648 TTATATTTTT
32999658 TTTTTTAC
1 TTTTTTAC
32999666 TTTTTTAC
1 TTTTTTAC
32999674 TTTTTTAAC
1 TTTTTT-AC
32999683 TTTTTTAC
1 TTTTTTAC
32999691 TTTTTT
1 TTTTTT
32999697 TTTATATTTT
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
8 22 0.73
9 8 0.27
ACGTcount: A:0.13, C:0.10, G:0.00, T:0.77
Consensus pattern (8 bp):
TTTTTTAC
Found at i:32999679 original size:17 final size:17
Alignment explanation
Indices: 32999657--32999697 Score: 73
Period size: 17 Copynumber: 2.4 Consensus size: 17
32999647 CTTATATTTT
32999657 TTTTTTTACTTTTTTAC
1 TTTTTTTACTTTTTTAC
*
32999674 TTTTTTAACTTTTTTAC
1 TTTTTTTACTTTTTTAC
32999691 TTTTTTT
1 TTTTTTT
32999698 TTATATTTTG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
17 22 1.00
ACGTcount: A:0.12, C:0.10, G:0.00, T:0.78
Consensus pattern (17 bp):
TTTTTTTACTTTTTTAC
Found at i:32999831 original size:40 final size:42
Alignment explanation
Indices: 32999782--32999859 Score: 99
Period size: 40 Copynumber: 1.9 Consensus size: 42
32999772 TAATTTTATA
*
32999782 TTATTAATTTTAAAAAATTTGTAA-TA-TA-TTTTAAAATGTT
1 TTATAAATTTTAAAAAATTT-TAATTATTATTTTTAAAATGTT
**
32999822 TTATAAATTTTTTAAAATTTTAATTATTATTTTTAAAA
1 TTATAAATTTTAAAAAATTTTAATTATTATTTTTAAAA
32999860 ATATTTTTTA
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
39 3 0.09
40 19 0.59
41 2 0.06
42 8 0.25
ACGTcount: A:0.42, C:0.00, G:0.03, T:0.55
Consensus pattern (42 bp):
TTATAAATTTTAAAAAATTTTAATTATTATTTTTAAAATGTT
Found at i:32999854 original size:21 final size:21
Alignment explanation
Indices: 32999773--32999859 Score: 65
Period size: 21 Copynumber: 4.1 Consensus size: 21
32999763 TTTCTTATTT
*
32999773 AATTTTATATTATTAATTTTAAAA
1 AATTTTA-ATTATT-ATTTT-TAA
32999797 AATTTGTAA-TA-TA-TTTTAA
1 AATTT-TAATTATTATTTTTAA
* * *
32999816 AATGTTTTATAAAT-TTTTTAA
1 AAT-TTTAATTATTATTTTTAA
32999837 AATTTTAATTATTATTTTTAA
1 AATTTTAATTATTATTTTTAA
32999858 AA
1 AA
32999860 ATATTTTTTA
Statistics
Matches: 51, Mismatches: 6, Indels: 15
0.71 0.08 0.21
Matches are distributed among these distances:
19 7 0.14
20 13 0.25
21 20 0.39
22 1 0.02
23 2 0.04
24 6 0.12
25 2 0.04
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.55
Consensus pattern (21 bp):
AATTTTAATTATTATTTTTAA
Found at i:33000018 original size:14 final size:14
Alignment explanation
Indices: 32999956--33000030 Score: 60
Period size: 14 Copynumber: 5.1 Consensus size: 14
32999946 AAAAAAATAA
*
32999956 TTATTTTTTTTTTT
1 TTATTTTTTTTTAT
* **
32999970 TTAGTTTTTTGAAGT
1 TTATTTTTTTTTA-T
*
32999985 CTAATTTTTTTCTTATT
1 -TTATTTTTTT-TTA-T
33000002 TTATTTTTTTTTAT
1 TTATTTTTTTTTAT
*
33000016 TTATTTATTTTTAT
1 TTATTTTTTTTTAT
33000030 T
1 T
33000031 ATACATTTCA
Statistics
Matches: 47, Mismatches: 11, Indels: 6
0.73 0.17 0.09
Matches are distributed among these distances:
14 24 0.51
15 4 0.09
16 17 0.36
17 2 0.04
ACGTcount: A:0.16, C:0.03, G:0.04, T:0.77
Consensus pattern (14 bp):
TTATTTTTTTTTAT
Found at i:33000635 original size:10 final size:9
Alignment explanation
Indices: 33000617--33000704 Score: 70
Period size: 9 Copynumber: 9.4 Consensus size: 9
33000607 GTAAATTTAA
33000617 AAAATATTT
1 AAAATATTT
33000626 AAAATCATTT
1 AAAAT-ATTT
*
33000636 AAAATATTA
1 AAAATATTT
33000645 AAAATATTT
1 AAAATATTT
*
33000654 TAAATCATTT
1 AAAAT-ATTT
* *
33000664 TAAATGTTTT
1 AAAAT-ATTT
* *
33000674 ATAATATTA
1 AAAATATTT
33000683 AAAATATATT
1 AAAATAT-TT
*
33000693 -TAATATTT
1 AAAATATTT
33000701 AAAA
1 AAAA
33000705 AATAATTTGA
Statistics
Matches: 62, Mismatches: 13, Indels: 8
0.75 0.16 0.10
Matches are distributed among these distances:
8 2 0.03
9 35 0.56
10 25 0.40
ACGTcount: A:0.52, C:0.02, G:0.01, T:0.44
Consensus pattern (9 bp):
AAAATATTT
Found at i:33000641 original size:19 final size:18
Alignment explanation
Indices: 33000617--33000704 Score: 70
Period size: 19 Copynumber: 4.7 Consensus size: 18
33000607 GTAAATTTAA
33000617 AAAATATTTAAAATCATTT
1 AAAATATTTAAAAT-ATTT
*
33000636 AAAATATTAAAAATATTT
1 AAAATATTTAAAATATTT
* * *
33000654 TAAATCATTTTAAATGTTTT
1 AAAAT-ATTTAAAAT-ATTT
* *
33000674 ATAATATTAAAAATATATT
1 AAAATATTTAAAATAT-TT
*
33000693 -TAATATTTAAAA
1 AAAATATTTAAAA
33000705 AATAATTTGA
Statistics
Matches: 55, Mismatches: 11, Indels: 7
0.75 0.15 0.10
Matches are distributed among these distances:
18 20 0.36
19 29 0.53
20 6 0.11
ACGTcount: A:0.52, C:0.02, G:0.01, T:0.44
Consensus pattern (18 bp):
AAAATATTTAAAATATTT
Found at i:33000721 original size:31 final size:34
Alignment explanation
Indices: 33000674--33000762 Score: 98
Period size: 34 Copynumber: 2.7 Consensus size: 34
33000664 TAAATGTTTT
33000674 ATAATATTAAAAATATA-TTTAATATTTA-AAAA
1 ATAATATTAAAAATATATTTTAATATTTATAAAA
*
33000706 ATAAT-TTGAAAATATATTTTTAATATTTATAAAA
1 ATAATATTAAAAATATA-TTTTAATATTTATAAAA
*
33000740 A-ATATATTATAAAACAT-TTTTAA
1 ATA-ATATTA-AAAATATATTTTAA
33000763 AAAATACATT
Statistics
Matches: 48, Mismatches: 3, Indels: 10
0.79 0.05 0.16
Matches are distributed among these distances:
31 10 0.21
32 5 0.10
33 12 0.25
34 13 0.27
35 2 0.04
36 6 0.12
ACGTcount: A:0.54, C:0.01, G:0.01, T:0.44
Consensus pattern (34 bp):
ATAATATTAAAAATATATTTTAATATTTATAAAA
Found at i:33000753 original size:13 final size:13
Alignment explanation
Indices: 33000727--33000768 Score: 52
Period size: 14 Copynumber: 3.3 Consensus size: 13
33000717 ATATATTTTT
33000727 AATATTTATAAAA
1 AATATTTATAAAA
33000740 AATATATTATAAAA
1 AATAT-TTATAAAA
*
33000754 CAT-TTT-TAAAA
1 AATATTTATAAAA
33000765 AATA
1 AATA
33000769 CATTTCAAGT
Statistics
Matches: 25, Mismatches: 2, Indels: 5
0.78 0.06 0.16
Matches are distributed among these distances:
11 7 0.28
12 2 0.08
13 6 0.24
14 10 0.40
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.38
Consensus pattern (13 bp):
AATATTTATAAAA
Found at i:33004254 original size:30 final size:30
Alignment explanation
Indices: 33004218--33004340 Score: 176
Period size: 30 Copynumber: 4.1 Consensus size: 30
33004208 AGTCAAATGG
* *
33004218 ACTCGAACCGCCTATATCCGGGTGATATGA
1 ACTCGAACCACCTATGTCCGGGTGATATGA
* *
33004248 ACTCGAACCACCCATGTCCGGATGATATGA
1 ACTCGAACCACCTATGTCCGGGTGATATGA
*
33004278 ACTCGAATCACAC-ATGTCCGGGTGATATGA
1 ACTCGAACCAC-CTATGTCCGGGTGATATGA
*
33004308 ACTCGAACCACCTATGTCCGGGTTATATGA
1 ACTCGAACCACCTATGTCCGGGTGATATGA
33004338 ACT
1 ACT
33004341 GCTTGGGACT
Statistics
Matches: 83, Mismatches: 8, Indels: 4
0.87 0.08 0.04
Matches are distributed among these distances:
29 1 0.01
30 81 0.98
31 1 0.01
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (30 bp):
ACTCGAACCACCTATGTCCGGGTGATATGA
Found at i:33007373 original size:19 final size:18
Alignment explanation
Indices: 33007337--33007380 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 18
33007327 AAAAAAATAT
*
33007337 ATTTAATATATATTTTTAAA
1 ATTT-ATATATATATTT-AA
*
33007357 ATTTATATTTATATTTAA
1 ATTTATATATATATTTAA
33007375 ATTTAT
1 ATTTAT
33007381 TAATAGTCAC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
18 8 0.36
19 10 0.45
20 4 0.18
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (18 bp):
ATTTATATATATATTTAA
Found at i:33007508 original size:21 final size:21
Alignment explanation
Indices: 33007480--33007523 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
33007470 TTAAAAAAAG
33007480 AATTTAAAAA-TAATATT-TAA
1 AATTTAAAAACT-ATATTATAA
33007500 AATTGTAAAAACTATATTATAA
1 AATT-TAAAAACTATATTATAA
33007522 AA
1 AA
33007524 CATTTTAAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
20 4 0.19
21 11 0.52
22 6 0.29
ACGTcount: A:0.59, C:0.02, G:0.02, T:0.36
Consensus pattern (21 bp):
AATTTAAAAACTATATTATAA
Found at i:33007711 original size:28 final size:27
Alignment explanation
Indices: 33007646--33007714 Score: 86
Period size: 26 Copynumber: 2.5 Consensus size: 27
33007636 AAATTTTAAA
*
33007646 AAATATATTTAAAATATTATAATTTCTT
1 AAAT-TATTTAAAAAATTATAATTTCTT
* *
33007674 ATATTA-TTAAAAAATTATAATTTTTT
1 AAATTATTTAAAAAATTATAATTTCTT
33007700 AAATGTATTTAAAAA
1 AAAT-TATTTAAAAA
33007715 TTGTATTTAA
Statistics
Matches: 35, Mismatches: 4, Indels: 4
0.81 0.09 0.09
Matches are distributed among these distances:
26 21 0.60
27 4 0.11
28 10 0.29
ACGTcount: A:0.49, C:0.01, G:0.01, T:0.48
Consensus pattern (27 bp):
AAATTATTTAAAAAATTATAATTTCTT
Found at i:33007722 original size:26 final size:26
Alignment explanation
Indices: 33007646--33007716 Score: 88
Period size: 27 Copynumber: 2.6 Consensus size: 26
33007636 AAATTTTAAA
33007646 AAATATATTTAAAATATTATAATTTCTT
1 AAAT-TATTTAAAA-ATTATAATTTCTT
* * *
33007674 ATATTATTAAAAAATTATAATTTTTT
1 AAATTATTTAAAAATTATAATTTCTT
33007700 AAATGTATTTAAAAATT
1 AAAT-TATTTAAAAATT
33007717 GTATTTAAAA
Statistics
Matches: 37, Mismatches: 5, Indels: 3
0.82 0.11 0.07
Matches are distributed among these distances:
26 15 0.41
27 19 0.51
28 3 0.08
ACGTcount: A:0.48, C:0.01, G:0.01, T:0.49
Consensus pattern (26 bp):
AAATTATTTAAAAATTATAATTTCTT
Found at i:33007872 original size:11 final size:11
Alignment explanation
Indices: 33007858--33007899 Score: 50
Period size: 11 Copynumber: 3.9 Consensus size: 11
33007848 GTCAAAAAAT
33007858 ATATATATTTA
1 ATATATATTTA
* **
33007869 ATATTTATAAA
1 ATATATATTTA
33007880 ATA-ATATTTA
1 ATATATATTTA
33007890 ATATATATTT
1 ATATATATTT
33007900 TTAAATTTAT
Statistics
Matches: 24, Mismatches: 6, Indels: 2
0.75 0.19 0.06
Matches are distributed among these distances:
10 7 0.29
11 17 0.71
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (11 bp):
ATATATATTTA
Found at i:33007920 original size:18 final size:18
Alignment explanation
Indices: 33007856--33007927 Score: 64
Period size: 18 Copynumber: 4.1 Consensus size: 18
33007846 GAGTCAAAAA
33007856 ATATATATATTTAATATTT
1 ATATATATATTTAA-ATTT
33007875 ATA-A-A-A--TAATATTT
1 ATATATATATTTAA-ATTT
*
33007889 AATATATATTTTTAAATTT
1 -ATATATATATTTAAATTT
*
33007908 ATATTTATATTTAAATTT
1 ATATATATATTTAAATTT
33007926 AT
1 AT
33007928 TAATAGTCAC
Statistics
Matches: 44, Mismatches: 3, Indels: 13
0.73 0.05 0.22
Matches are distributed among these distances:
14 8 0.18
15 3 0.07
16 2 0.05
17 2 0.05
18 19 0.43
19 7 0.16
20 3 0.07
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (18 bp):
ATATATATATTTAAATTT
Found at i:33008128 original size:24 final size:23
Alignment explanation
Indices: 33008101--33008159 Score: 55
Period size: 25 Copynumber: 2.4 Consensus size: 23
33008091 TTATAAAACT
*
33008101 AATAATTTCAAAACTAATTTAAAA
1 AATAATTTCAAAACTAA-TAAAAA
* * *
33008125 AATACATTTTTAAAATTTATAAAAA
1 AATA-A-TTTCAAAACTAATAAAAA
33008150 AATAATTTCA
1 AATAATTTCA
33008160 CAAATATATA
Statistics
Matches: 28, Mismatches: 5, Indels: 5
0.74 0.13 0.13
Matches are distributed among these distances:
23 4 0.14
24 5 0.18
25 10 0.36
26 9 0.32
ACGTcount: A:0.56, C:0.07, G:0.00, T:0.37
Consensus pattern (23 bp):
AATAATTTCAAAACTAATAAAAA
Found at i:33008164 original size:24 final size:23
Alignment explanation
Indices: 33008081--33008169 Score: 63
Period size: 24 Copynumber: 3.7 Consensus size: 23
33008071 TTAAACATAC
*
33008081 ATTTC-AAATATTATAAAACTAATA
1 ATTTCAAAAT-TTATAAAA-AAATA
* * *
33008105 ATTTCAAAACTAATTTAAAAAATA
1 ATTTCAAAATTTA-TAAAAAAATA
*
33008129 CATTTTTAAAATTTATAAAAAAATA
1 -A-TTTCAAAATTTATAAAAAAATA
*
33008154 ATTTCACAAATATATA
1 ATTTCA-AAATTTATA
33008170 TAAATATATA
Statistics
Matches: 50, Mismatches: 10, Indels: 10
0.71 0.14 0.14
Matches are distributed among these distances:
23 4 0.08
24 20 0.40
25 17 0.34
26 9 0.18
ACGTcount: A:0.55, C:0.08, G:0.00, T:0.37
Consensus pattern (23 bp):
ATTTCAAAATTTATAAAAAAATA
Found at i:33008171 original size:26 final size:24
Alignment explanation
Indices: 33008081--33008228 Score: 78
Period size: 26 Copynumber: 6.0 Consensus size: 24
33008071 TTAAACATAC
*
33008081 ATTTC-AAATATTATAAAACTAATA
1 ATTTCAAAATATTATAAAA-AAATA
33008105 ATTTCAAAACTAATT-T-AAAAAATA
1 ATTTCAAAA-T-ATTATAAAAAAATA
*
33008129 CATTTTTAAAAT-TTATAAAAAAATA
1 -A-TTTCAAAATATTATAAAAAAATA
*
33008154 ATTTCACAAATATATATAAATATATATAA
1 ATTTCA-AAATAT-TATAAA-A-AAAT-A
** *
33008183 AGTTAAAAAATATTTTAAAAATAATA
1 A-TTTCAAAATATTATAAAAA-AATA
33008209 A-TT-AAAAT-TT-TAAAAAAATA
1 ATTTCAAAATATTATAAAAAAATA
33008229 TTATAAAACA
Statistics
Matches: 100, Mismatches: 9, Indels: 34
0.70 0.06 0.24
Matches are distributed among these distances:
20 4 0.04
21 6 0.06
22 2 0.02
23 11 0.11
24 16 0.16
25 17 0.17
26 18 0.18
27 7 0.07
28 8 0.08
29 8 0.08
30 3 0.03
ACGTcount: A:0.58, C:0.05, G:0.01, T:0.36
Consensus pattern (24 bp):
ATTTCAAAATATTATAAAAAAATA
Found at i:33008220 original size:21 final size:21
Alignment explanation
Indices: 33008194--33008280 Score: 72
Period size: 21 Copynumber: 4.0 Consensus size: 21
33008184 GTTAAAAAAT
33008194 ATTTTAAAAATAATAATTAAA
1 ATTTTAAAAATAATAATTAAA
*
33008215 ATTTTAAAAA-AATATTATAAAA
1 ATTTTAAAAATAATA--ATTAAA
*
33008237 CATTTTAAATAT-AT-ATTACAA
1 -ATTTTAAAAATAATAATTA-AA
*
33008258 ATTTTTAAAATTAATAATATAAA
1 A-TTTTAAAAATAATAAT-TAAA
33008281 TTAAATAAGC
Statistics
Matches: 52, Mismatches: 5, Indels: 16
0.71 0.07 0.22
Matches are distributed among these distances:
20 8 0.15
21 20 0.38
22 7 0.13
23 15 0.29
24 2 0.04
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.40
Consensus pattern (21 bp):
ATTTTAAAAATAATAATTAAA
Found at i:33008281 original size:22 final size:21
Alignment explanation
Indices: 33008194--33008282 Score: 65
Period size: 22 Copynumber: 4.1 Consensus size: 21
33008184 GTTAAAAAAT
*
33008194 ATTTTAAAAATAATAAT-TAA
1 ATTTTTAAAATAATAATATAA
* * *
33008214 AATTTTAAAAAAATATTATAAA
1 ATTTTTAAAATAATAATAT-AA
* * *
33008236 ACATTTT-AAATATATATTACAA
1 A-TTTTTAAAATA-ATAATATAA
33008258 ATTTTTAAAATTAATAATATAA
1 ATTTTTAAAA-TAATAATATAA
33008280 ATT
1 ATT
33008283 AAATAAGCAA
Statistics
Matches: 54, Mismatches: 9, Indels: 10
0.74 0.12 0.14
Matches are distributed among these distances:
20 13 0.24
21 5 0.09
22 23 0.43
23 13 0.24
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.42
Consensus pattern (21 bp):
ATTTTTAAAATAATAATATAA
Found at i:33008315 original size:18 final size:18
Alignment explanation
Indices: 33008265--33008316 Score: 52
Period size: 18 Copynumber: 2.9 Consensus size: 18
33008255 CAAATTTTTA
*
33008265 AAATTAATAATATAAATT
1 AAATAAATAATATAAATT
** *
33008283 AAATAAGCAAAATAAATT
1 AAATAAATAATATAAATT
33008301 AAGA-AAATAATATAAA
1 AA-ATAAATAATATAAA
33008317 ACTTAAAAAA
Statistics
Matches: 26, Mismatches: 7, Indels: 2
0.74 0.20 0.06
Matches are distributed among these distances:
18 25 0.96
19 1 0.04
ACGTcount: A:0.67, C:0.02, G:0.04, T:0.27
Consensus pattern (18 bp):
AAATAAATAATATAAATT
Found at i:33008370 original size:18 final size:17
Alignment explanation
Indices: 33008291--33008390 Score: 61
Period size: 18 Copynumber: 5.9 Consensus size: 17
33008281 TTAAATAAGC
33008291 AAAAT-AAATTAAGAAA
1 AAAATAAAATTAAGAAA
33008307 ATAATATAAAACTTAA-AAA
1 A-AA-ATAAAA-TTAAGAAA
33008326 AGAAA-AAAATCTAAGAAA
1 A-AAATAAAAT-TAAGAAA
* * *
33008344 GAGACAAAATATAAGAAA
1 AAAATAAAAT-TAAGAAA
*
33008362 AAAATAAAA--AAGTAA
1 AAAATAAAATTAAGAAA
33008377 AAAA-AAAA-TAAGAA
1 AAAATAAAATTAAGAA
33008391 CCTGAAAATC
Statistics
Matches: 67, Mismatches: 9, Indels: 17
0.72 0.10 0.18
Matches are distributed among these distances:
14 4 0.06
15 13 0.19
16 2 0.03
17 11 0.16
18 24 0.36
19 9 0.13
20 4 0.06
ACGTcount: A:0.74, C:0.03, G:0.08, T:0.15
Consensus pattern (17 bp):
AAAATAAAATTAAGAAA
Found at i:33014709 original size:5 final size:5
Alignment explanation
Indices: 33014699--33014732 Score: 59
Period size: 5 Copynumber: 6.6 Consensus size: 5
33014689 CCACTTTGTG
33014699 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAAT AAA
1 AAAAT AAAAT AAAAT AAAAT AAAAT -AAAAT AAA
33014733 TAGATTTTTA
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
5 23 0.82
6 5 0.18
ACGTcount: A:0.82, C:0.00, G:0.00, T:0.18
Consensus pattern (5 bp):
AAAAT
Found at i:33016040 original size:31 final size:29
Alignment explanation
Indices: 33015970--33016041 Score: 72
Period size: 31 Copynumber: 2.3 Consensus size: 29
33015960 TTCTTTTCTG
* *
33015970 AGATAAATTTGACCTTAACCTTTAAAAAA
1 AGATGAATTTGACCTCAACCTTTAAAAAA
* *
33015999 AAAGTCGAATTTGACCATCAACCTTTCAAAAAT
1 AGA-T-GAATTTGACC-TCAACCTTT-AAAAAA
33016032 AGATGAATTT
1 AGATGAATTT
33016042 TAGTTTTTTT
Statistics
Matches: 34, Mismatches: 5, Indels: 6
0.76 0.11 0.13
Matches are distributed among these distances:
29 2 0.06
30 1 0.03
31 15 0.44
32 9 0.26
33 7 0.21
ACGTcount: A:0.44, C:0.15, G:0.10, T:0.31
Consensus pattern (29 bp):
AGATGAATTTGACCTCAACCTTTAAAAAA
Found at i:33019787 original size:55 final size:55
Alignment explanation
Indices: 33019718--33019852 Score: 202
Period size: 55 Copynumber: 2.5 Consensus size: 55
33019708 CGTGCCCTTA
* * *
33019718 GCCCGTGTGCAACACTGACTTTAAAACACGGCCATGACATACGCCCGTGTGGCCT
1 GCCCGTGTACAACACTGACTTTAAAACACGACCATGACACACGCCCGTGTGGCCT
*
33019773 GCCCGTGTACAACACTGACTTTAAAACACGATCATGACACACGCCCGTGTGGCCT
1 GCCCGTGTACAACACTGACTTTAAAACACGACCATGACACACGCCCGTGTGGCCT
*
33019828 ACCCGTGTACTAA-ACTGAC-TTAAAA
1 GCCCGTGTAC-AACACTGACTTTAAAA
33019853 TTTTAAGTGC
Statistics
Matches: 74, Mismatches: 5, Indels: 3
0.90 0.06 0.04
Matches are distributed among these distances:
54 6 0.08
55 66 0.89
56 2 0.03
ACGTcount: A:0.28, C:0.31, G:0.20, T:0.21
Consensus pattern (55 bp):
GCCCGTGTACAACACTGACTTTAAAACACGACCATGACACACGCCCGTGTGGCCT
Found at i:33020684 original size:49 final size:48
Alignment explanation
Indices: 33020623--33020875 Score: 181
Period size: 47 Copynumber: 5.4 Consensus size: 48
33020613 CGATTCCATA
*
33020623 TCCCAGACATGGTCTCACACAGGCTATCATCATCAAGGCCGATGCCATG
1 TCCCAGACATGGTCTTACACAGGCTATCATCATCAAGGCCGATG-CATG
* * * *
33020672 TCCCAGACATGGTCTTATACTA-GCTTTCGTAT-AT-ACGTGCTGATGCATG
1 TCCCAGACATGGTCTTACAC-AGGCTATC--ATCATCAAG-GCCGATGCATG
* * *
33020721 TCCCGGACAT-GTCTTACACTA-GC-ATGACTC-TTAA--CCGATGCATG
1 TCCCAGACATGGTCTTACAC-AGGCTATCA-TCATCAAGGCCGATGCATG
* * * * *
33020765 TTCCAGACA-CGTTTTACACTGGCTATCATCATCGAGGCCGATGCATG
1 TCCCAGACATGGTCTTACACAGGCTATCATCATCAAGGCCGATGCATG
* * *
33020812 TCCCAGACAT-GTCTTACACTGG-TACTCATC-TCTACGCCGATGCCATG
1 TCCCAGACATGGTCTTACACAGGCTA-TCATCATCAAGGCCGATG-CATG
*
33020859 TCCCAAACATGGTCTTA
1 TCCCAGACATGGTCTTA
33020876 AAATGGCACT
Statistics
Matches: 164, Mismatches: 23, Indels: 35
0.74 0.10 0.16
Matches are distributed among these distances:
44 28 0.17
45 6 0.04
46 14 0.09
47 49 0.30
48 18 0.11
49 38 0.23
50 9 0.05
51 2 0.01
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.28
Consensus pattern (48 bp):
TCCCAGACATGGTCTTACACAGGCTATCATCATCAAGGCCGATGCATG
Found at i:33020869 original size:47 final size:47
Alignment explanation
Indices: 33020623--33020926 Score: 180
Period size: 47 Copynumber: 6.4 Consensus size: 47
33020613 CGATTCCATA
* * * *
33020623 TCCCAGACATGGTCTCACACAGGCTATCATCATCAAGGCCGATGCCATG
1 TCCCAGACAT-GTCTTACACTGGCTATCATCATCGACGCCGATG-CATG
* * * * *
33020672 TCCCAGACATGGTCTTATACTAGCTTTCGTAT-ATACG-TGCTGATGCATG
1 TCCCAGACAT-GTCTTACACTGGCTATC--ATCAT-CGACGCCGATGCATG
* * * * *
33020721 TCCCGGACATGTCTTACACTAGC-ATGA-C-TCTTA-ACCGATGCATG
1 TCCCAGACATGTCTTACACTGGCTATCATCATC-GACGCCGATGCATG
* * * *
33020765 TTCCAGACACGTTTTACACTGGCTATCATCATCGAGGCCGATGCATG
1 TCCCAGACATGTCTTACACTGGCTATCATCATCGACGCCGATGCATG
*
33020812 TCCCAGACATGTCTTACACTGG-TACTCATC-TCTACGCCGATGCCATG
1 TCCCAGACATGTCTTACACTGGCTA-TCATCATCGACGCCGATG-CATG
* * * * * * *
33020859 TCCCAAACATGGTCTTAAAATGGC-ACTTATAAT-G-TGATCGATGCATG
1 TCCCAGACAT-GTCTTACACTGGCTA-TCATCATCGACG-CCGATGCATG
*
33020906 TCCTAGACATGTCTTACACTG
1 TCCCAGACATGTCTTACACTG
33020927 ATACACAAGA
Statistics
Matches: 199, Mismatches: 40, Indels: 35
0.73 0.15 0.13
Matches are distributed among these distances:
43 1 0.01
44 28 0.14
45 4 0.02
46 23 0.12
47 63 0.32
48 32 0.16
49 37 0.19
50 8 0.04
51 3 0.02
ACGTcount: A:0.25, C:0.28, G:0.19, T:0.28
Consensus pattern (47 bp):
TCCCAGACATGTCTTACACTGGCTATCATCATCGACGCCGATGCATG
Found at i:33028295 original size:47 final size:47
Alignment explanation
Indices: 33028244--33028398 Score: 199
Period size: 47 Copynumber: 3.3 Consensus size: 47
33028234 TCTAGACACA
* *
33028244 TCTTACACTAGCTA-TCATCATCGAGGCCGATGCATGTCCCACACATG
1 TCTTACACTGGC-ACTCATCATCGAGGCCGATGCATGTCCCAGACATG
* *
33028291 TCTTACACTGGCACTCATC-TCTATGCCGATGCCATGTCCCAGACATGG
1 TCTTACACTGGCACTCATCATCGAGGCCGATG-CATGTCCCAGACAT-G
* * *
33028339 TCTTAAACTGGCACTCATAAT-GTGGCCGATGCATGTCCCAGACATG
1 TCTTACACTGGCACTCATCATCGAGGCCGATGCATGTCCCAGACATG
33028385 TCTTACACTGGCAC
1 TCTTACACTGGCAC
33028399 ATAAGAAATC
Statistics
Matches: 94, Mismatches: 10, Indels: 9
0.83 0.09 0.08
Matches are distributed among these distances:
46 25 0.27
47 43 0.46
48 25 0.27
49 1 0.01
ACGTcount: A:0.24, C:0.31, G:0.19, T:0.26
Consensus pattern (47 bp):
TCTTACACTGGCACTCATCATCGAGGCCGATGCATGTCCCAGACATG
Found at i:33031641 original size:16 final size:16
Alignment explanation
Indices: 33031605--33031642 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
33031595 TTCAAATTTA
*
33031605 ATAAAATTATTATTAT
1 ATAAAATTATTAATAT
33031621 ATAAAATTATTAA-AT
1 ATAAAATTATTAATAT
*
33031636 ATTAAAT
1 ATAAAAT
33031643 AAAAACTTGT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
15 8 0.40
16 12 0.60
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (16 bp):
ATAAAATTATTAATAT
Found at i:33048606 original size:22 final size:20
Alignment explanation
Indices: 33048556--33048608 Score: 54
Period size: 22 Copynumber: 2.5 Consensus size: 20
33048546 AACACTTGCA
*
33048556 AACATAT-ACCAACCAATTC
1 AACATATAACCAACCAAGTC
33048575 AAGCATTATAACCAAGCCAAGTC
1 AA-CA-TATAACCAA-CCAAGTC
33048598 TAACATATAAC
1 -AACATATAAC
33048609 ATGATATATT
Statistics
Matches: 28, Mismatches: 1, Indels: 7
0.78 0.03 0.19
Matches are distributed among these distances:
19 2 0.07
20 2 0.07
21 3 0.11
22 11 0.39
23 8 0.29
24 2 0.07
ACGTcount: A:0.47, C:0.26, G:0.06, T:0.21
Consensus pattern (20 bp):
AACATATAACCAACCAAGTC
Found at i:33053514 original size:27 final size:28
Alignment explanation
Indices: 33053430--33053527 Score: 135
Period size: 27 Copynumber: 3.5 Consensus size: 28
33053420 CATGAAATTG
* * * *
33053430 GCACTAAGTGTGCGGGTTTAAATTGTACA
1 GCACTAAGTGTGCGAGTTT-GATTATATA
33053459 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
33053487 GCACTAAGTGTGCGAG-TTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
33053514 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
33053528 GACTTAATAT
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 24 0.38
28 22 0.34
29 18 0.28
ACGTcount: A:0.27, C:0.13, G:0.29, T:0.32
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:33053538 original size:27 final size:27
Alignment explanation
Indices: 33053458--33053540 Score: 96
Period size: 27 Copynumber: 3.0 Consensus size: 27
33053448 TAAATTGTAC
* *
33053458 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGA-CTTGAATATAT
* *
33053486 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGACTTGAATATAT
*
33053513 AGCACTGAGTGTGCGGACTT-AATATAT
1 AGCACTAAGTGTGC-GACTTGAATATAT
33053540 A
1 A
33053541 TTTTTGAATC
Statistics
Matches: 50, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
27 30 0.60
28 20 0.40
ACGTcount: A:0.30, C:0.12, G:0.25, T:0.33
Consensus pattern (27 bp):
AGCACTAAGTGTGCGACTTGAATATAT
Found at i:33053541 original size:29 final size:27
Alignment explanation
Indices: 33053430--33053541 Score: 98
Period size: 28 Copynumber: 4.0 Consensus size: 27
33053420 CATGAAATTG
** * *
33053430 GCACTAAGTGTGCGGGTTTAAATTGTACA
1 GCACTAAGTGTGC-GACTT-AATTATATA
* *
33053459 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGA-CTTAATTATATA
* *
33053487 GCACTAAGTGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGACTTAATTATATA
*
33053514 GCACTGAGTGTGCGGACTTAATATATAT
1 GCACTAAGTGTGC-GACTTAAT-TATAT
33053542 TTTTGAATCA
Statistics
Matches: 72, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
27 23 0.32
28 28 0.39
29 21 0.29
ACGTcount: A:0.29, C:0.12, G:0.26, T:0.33
Consensus pattern (27 bp):
GCACTAAGTGTGCGACTTAATTATATA
Found at i:33060236 original size:23 final size:22
Alignment explanation
Indices: 33060192--33060236 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 22
33060182 TGATTAAAGA
*
33060192 AATTACAAAAATATTATTTTAT
1 AATTACAAAAATATTATATTAT
33060214 AATTA-AAAAATAAATTATATTAT
1 AATTACAAAAAT--ATTATATTAT
33060237 TTAGGGGTTT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
21 6 0.30
22 5 0.25
23 9 0.45
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.42
Consensus pattern (22 bp):
AATTACAAAAATATTATATTAT
Found at i:33063565 original size:8 final size:8
Alignment explanation
Indices: 33063552--33063682 Score: 68
Period size: 8 Copynumber: 15.1 Consensus size: 8
33063542 TTTAGTTCTT
33063552 TTTATATA
1 TTTATATA
33063560 TTTATATA
1 TTTATATA
*
33063568 TTTTTTATAAA
1 ---TTTATATA
33063579 TTTATATA
1 TTTATATA
*
33063587 TTATATATT
1 TT-TATATA
33063596 TTTATATA
1 TTTATATA
* *
33063604 TTTTTCAAAA
1 TTTAT--ATA
**
33063614 TGTTATAGCC
1 T-TTATA-TA
33063624 TTTATATA
1 TTTATATA
*
33063632 TTTATTTAA
1 TTTATAT-A
33063641 TTGTATATA
1 TT-TATATA
*
33063650 TTTTTATAA
1 TTTATAT-A
33063659 TTTATA-A
1 TTTATATA
33063666 CTTTATA-A
1 -TTTATATA
33063674 TTTATATA
1 TTTATATA
33063682 T
1 T
33063683 ATTTTAAAAA
Statistics
Matches: 95, Mismatches: 15, Indels: 26
0.70 0.11 0.19
Matches are distributed among these distances:
7 7 0.07
8 45 0.47
9 25 0.26
10 8 0.08
11 10 0.11
ACGTcount: A:0.35, C:0.03, G:0.02, T:0.60
Consensus pattern (8 bp):
TTTATATA
Found at i:33063574 original size:19 final size:19
Alignment explanation
Indices: 33063550--33063608 Score: 77
Period size: 19 Copynumber: 3.2 Consensus size: 19
33063540 TTTTTAGTTC
33063550 TTTTTATATATTTATATAT
1 TTTTTATATATTTATATAT
*
33063569 TTTTTATAAATTTATATA-
1 TTTTTATATATTTATATAT
* *
33063587 -TTATATATTTTTATATAT
1 TTTTTATATATTTATATAT
33063605 TTTT
1 TTTT
33063609 CAAAATGTTA
Statistics
Matches: 33, Mismatches: 5, Indels: 4
0.79 0.12 0.10
Matches are distributed among these distances:
17 14 0.42
19 19 0.58
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (19 bp):
TTTTTATATATTTATATAT
Found at i:33063630 original size:36 final size:35
Alignment explanation
Indices: 33063552--33063636 Score: 100
Period size: 36 Copynumber: 2.4 Consensus size: 35
33063542 TTTAGTTCTT
* *
33063552 TTTATATATTTATATATTTTTTATAAATTTATATA
1 TTTATATATTTATATATTTTTCATAAATTTATACA
* *
33063587 TTATATATTTTTATATATTTTTCA-AAATGTTATAGCC
1 TT-TATATATTTATATATTTTTCATAAAT-TTATA-CA
33063624 TTTATATATTTAT
1 TTTATATATTTAT
33063637 TTAATTGTAT
Statistics
Matches: 42, Mismatches: 5, Indels: 5
0.81 0.10 0.10
Matches are distributed among these distances:
35 6 0.14
36 34 0.81
37 2 0.05
ACGTcount: A:0.34, C:0.04, G:0.02, T:0.60
Consensus pattern (35 bp):
TTTATATATTTATATATTTTTCATAAATTTATACA
Found at i:33063653 original size:46 final size:43
Alignment explanation
Indices: 33063571--33063681 Score: 127
Period size: 46 Copynumber: 2.6 Consensus size: 43
33063561 TTATATATTT
* * *
33063571 TTTATAAATTTATATA-TTATATATTTTTATATATTTTTCAAAA
1 TTTATAACTTTATATATTTATATAATTGTATATATTTTT-AAAA
* * *
33063614 TGTTATAGCCTTTATATATTTATTTAATTGTATATATTTTTATAA
1 T-TTATA-ACTTTATATATTTATATAATTGTATATATTTTTAAAA
33063659 TTTATAACTTTATA-ATTTATATA
1 TTTATAACTTTATATATTTATATA
33063682 TATTTTAAAA
Statistics
Matches: 57, Mismatches: 8, Indels: 7
0.79 0.11 0.10
Matches are distributed among these distances:
42 8 0.14
43 8 0.14
44 10 0.18
45 12 0.21
46 19 0.33
ACGTcount: A:0.36, C:0.04, G:0.03, T:0.58
Consensus pattern (43 bp):
TTTATAACTTTATATATTTATATAATTGTATATATTTTTAAAA
Found at i:33070025 original size:12 final size:13
Alignment explanation
Indices: 33070000--33070028 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
33069990 TTTCACTCCA
33070000 TTTATGTATATAT
1 TTTATGTATATAT
33070013 TTTATGTAT-TAT
1 TTTATGTATATAT
33070025 TTTA
1 TTTA
33070029 ATATTTTTTA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 7 0.44
13 9 0.56
ACGTcount: A:0.28, C:0.00, G:0.07, T:0.66
Consensus pattern (13 bp):
TTTATGTATATAT
Found at i:33070532 original size:12 final size:12
Alignment explanation
Indices: 33070515--33070548 Score: 52
Period size: 12 Copynumber: 2.9 Consensus size: 12
33070505 TCACCGACCC
33070515 ATATTAATTTTT
1 ATATTAATTTTT
*
33070527 ATATTATTTTTT
1 ATATTAATTTTT
33070539 ATA-TAATTTT
1 ATATTAATTTT
33070549 AAAATATATA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
11 6 0.30
12 14 0.70
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (12 bp):
ATATTAATTTTT
Found at i:33070707 original size:30 final size:29
Alignment explanation
Indices: 33070671--33070727 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 29
33070661 CAATTTAACA
33070671 AGCAAATG-CCTCTAAAATAATAATAAAATT
1 AGCAAATGTCCT-TAAAATAATAA-AAAATT
33070701 AGCAAATGTCCTTAAAATAATAAAAAA
1 AGCAAATGTCCTTAAAATAATAAAAAA
33070728 GATTAACAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
29 4 0.15
30 19 0.73
31 3 0.12
ACGTcount: A:0.56, C:0.12, G:0.07, T:0.25
Consensus pattern (29 bp):
AGCAAATGTCCTTAAAATAATAAAAAATT
Found at i:33070790 original size:22 final size:22
Alignment explanation
Indices: 33070765--33070807 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
33070755 TATCCAAACA
33070765 ATAACAACAAAATAGTAGCAAC
1 ATAACAACAAAATAGTAGCAAC
* **
33070787 ATAATAGTAAAATAGTAGCAA
1 ATAACAACAAAATAGTAGCAA
33070808 AATAGGAAGA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.58, C:0.12, G:0.12, T:0.19
Consensus pattern (22 bp):
ATAACAACAAAATAGTAGCAAC
Found at i:33070811 original size:11 final size:11
Alignment explanation
Indices: 33070772--33070812 Score: 55
Period size: 11 Copynumber: 3.7 Consensus size: 11
33070762 ACAATAACAA
33070772 CAAAATAGTAG
1 CAAAATAGTAG
* *
33070783 CAACATAATAG
1 CAAAATAGTAG
*
33070794 TAAAATAGTAG
1 CAAAATAGTAG
33070805 CAAAATAG
1 CAAAATAG
33070813 GAAGAAAATA
Statistics
Matches: 24, Mismatches: 6, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
11 24 1.00
ACGTcount: A:0.56, C:0.10, G:0.15, T:0.20
Consensus pattern (11 bp):
CAAAATAGTAG
Found at i:33071954 original size:29 final size:29
Alignment explanation
Indices: 33071914--33071971 Score: 75
Period size: 29 Copynumber: 2.0 Consensus size: 29
33071904 ATCCAACAAT
33071914 AATTAAATAAATAATTAAAAA-TTCATAAA
1 AATTAAATAAAT-ATTAAAAACTTCATAAA
*
33071943 AATT-AATGAAATATTAAAAACTTTATAAA
1 AATTAAAT-AAATATTAAAAACTTCATAAA
33071972 TAAATTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
28 11 0.42
29 15 0.58
ACGTcount: A:0.62, C:0.03, G:0.02, T:0.33
Consensus pattern (29 bp):
AATTAAATAAATATTAAAAACTTCATAAA
Found at i:33072147 original size:40 final size:40
Alignment explanation
Indices: 33072103--33072416 Score: 207
Period size: 40 Copynumber: 8.1 Consensus size: 40
33072093 ATGCTTGTAC
* *
33072103 AGATTGAGCATTAGCGACACTTTTTGAAAAACGCCGCTAT
1 AGATTGAGCATTAGCGGCGCTTTTTGAAAAACGCCGCTAT
* * *
33072143 AGATTGAGCATTAGCGGTGCTTTTTGAAAAACGCCAC-AA
1 AGATTGAGCATTAGCGGCGCTTTTTGAAAAACGCCGCTAT
* * * * * * **** * *
33072182 AAAATAAGCA-CAGCGCCGTCGTTTT--ATGTTG-AGCTTT
1 AGATTGAGCATTAGCGGCG-CTTTTTGAAAAACGCCGCTAT
** * *
33072219 AG--TG-GCATTAGCGGTACTTTTTTAAAAACACCGCTAT
1 AGATTGAGCATTAGCGGCGCTTTTTGAAAAACGCCGCTAT
* * * * *
33072256 AGGTCGAGCACTAGCGGTGCTTTTTG-AAAACGTCGCTAT
1 AGATTGAGCATTAGCGGCGCTTTTTGAAAAACGCCGCTAT
* * *
33072295 AGGTCGAGCATTAGCGGCGCTTTCTGAAAAACGCCGCTAT
1 AGATTGAGCATTAGCGGCGCTTTTTGAAAAACGCCGCTAT
* * *
33072335 AGA-AGAGCATTAGCGGCACTTTTTGAAAAACGCCACTAT
1 AGATTGAGCATTAGCGGCGCTTTTTGAAAAACGCCGCTAT
** * * * *
33072374 AGATCAAGTATTAGCGACGCTTTCTGAAAAACGCTGCTAT
1 AGATTGAGCATTAGCGGCGCTTTTTGAAAAACGCCGCTAT
33072414 AGA
1 AGA
33072417 AAAATATTTG
Statistics
Matches: 206, Mismatches: 57, Indels: 22
0.72 0.20 0.08
Matches are distributed among these distances:
34 8 0.04
35 5 0.02
36 2 0.01
37 9 0.04
38 5 0.02
39 83 0.40
40 94 0.46
ACGTcount: A:0.30, C:0.20, G:0.23, T:0.27
Consensus pattern (40 bp):
AGATTGAGCATTAGCGGCGCTTTTTGAAAAACGCCGCTAT
Found at i:33072293 original size:39 final size:39
Alignment explanation
Indices: 33072223--33072415 Score: 172
Period size: 39 Copynumber: 4.9 Consensus size: 39
33072213 AGCTTTAGTG
* * *
33072223 GCATTAGCGGTACTTTTTTAAAAACACCGCTATAGGTCGA
1 GCATTAGCGGCAC-TTTTTGAAAACGCCGCTATAGGTCGA
* ** *
33072263 GCACTAGCGGTGCTTTTTGAAAACGTCGCTATAGGTCGA
1 GCATTAGCGGCACTTTTTGAAAACGCCGCTATAGGTCGA
* * **
33072302 GCATTAGCGGCGCTTTCTGAAAAACGCCGCTATA-GAAGA
1 GCATTAGCGGCACTTTTTG-AAAACGCCGCTATAGGTCGA
* * *
33072341 GCATTAGCGGCACTTTTTGAAAAACGCCACTATAGATCAA
1 GCATTAGCGGCACTTTTTG-AAAACGCCGCTATAGGTCGA
* * * * *
33072381 GTATTAGCGACGCTTTCTGAAAAACGCTGCTATAG
1 GCATTAGCGGCACTTTTTG-AAAACGCCGCTATAG
33072416 AAAAATATTT
Statistics
Matches: 127, Mismatches: 24, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
39 73 0.57
40 54 0.43
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (39 bp):
GCATTAGCGGCACTTTTTGAAAACGCCGCTATAGGTCGA
Found at i:33072365 original size:79 final size:78
Alignment explanation
Indices: 33072223--33072417 Score: 219
Period size: 79 Copynumber: 2.5 Consensus size: 78
33072213 AGCTTTAGTG
** * * * ** **
33072223 GCATTAGCGGTACTTTTTTAAAAACACCGCTATAGGTCGAGCACTAGCGGTGCTTTTTGAAAACG
1 GCATTAGCGGCGCTTTCTGAAAAACGCCGCTATA-GAAGAGCACTAGCGGCACTTTTTGAAAACG
* * * *
33072288 TCGCTATAGGTCGA
65 CCACTATAGATCAA
*
33072302 GCATTAGCGGCGCTTTCTGAAAAACGCCGCTATAGAAGAGCATTAGCGGCACTTTTTGAAAAACG
1 GCATTAGCGGCGCTTTCTGAAAAACGCCGCTATAGAAGAGCACTAGCGGCACTTTTTG-AAAACG
33072367 CCACTATAGATCAA
65 CCACTATAGATCAA
* * *
33072381 GTATTAGCGACGCTTTCTGAAAAACGCTGCTATAGAA
1 GCATTAGCGGCGCTTTCTGAAAAACGCCGCTATAGAA
33072418 AAATATTTGT
Statistics
Matches: 98, Mismatches: 17, Indels: 2
0.84 0.15 0.02
Matches are distributed among these distances:
78 19 0.19
79 79 0.81
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (78 bp):
GCATTAGCGGCGCTTTCTGAAAAACGCCGCTATAGAAGAGCACTAGCGGCACTTTTTGAAAACGC
CACTATAGATCAA
Found at i:33072673 original size:7 final size:7
Alignment explanation
Indices: 33072661--33072693 Score: 66
Period size: 7 Copynumber: 4.7 Consensus size: 7
33072651 GCCGGTTTAA
33072661 GGGTTAG
1 GGGTTAG
33072668 GGGTTAG
1 GGGTTAG
33072675 GGGTTAG
1 GGGTTAG
33072682 GGGTTAG
1 GGGTTAG
33072689 GGGTT
1 GGGTT
33072694 TATGTTTTAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 26 1.00
ACGTcount: A:0.12, C:0.00, G:0.58, T:0.30
Consensus pattern (7 bp):
GGGTTAG
Found at i:33072716 original size:7 final size:7
Alignment explanation
Indices: 33072654--33072727 Score: 51
Period size: 7 Copynumber: 10.4 Consensus size: 7
33072644 GTTTAAGGCC
33072654 GGTTTAAG
1 GGTTT-AG
33072662 GG-TTAG
1 GGTTTAG
*
33072668 GGGTTAG
1 GGTTTAG
*
33072675 GGGTTAG
1 GGTTTAG
*
33072682 GGGTTAGG
1 GGTTTA-G
*
33072690 GGTTTAT
1 GGTTTAG
* *
33072697 GTTTTAT
1 GGTTTAG
*
33072704 GATTTAG
1 GGTTTAG
33072711 GGTTTAG
1 GGTTTAG
*
33072718 GGGTTAG
1 GGTTTAG
33072725 GGT
1 GGT
33072728 AGATTAATTC
Statistics
Matches: 56, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
6 4 0.07
7 44 0.79
8 8 0.14
ACGTcount: A:0.16, C:0.00, G:0.45, T:0.39
Consensus pattern (7 bp):
GGTTTAG
Found at i:33072724 original size:14 final size:14
Alignment explanation
Indices: 33072654--33072727 Score: 67
Period size: 14 Copynumber: 5.2 Consensus size: 14
33072644 GTTTAAGGCC
*
33072654 GGTTTAAGGGTTAG
1 GGTTTAGGGGTTAG
*
33072668 GGGTTAGGGGTTAG
1 GGTTTAGGGGTTAG
* *
33072682 GGGTTAGGGGTTTAT
1 GGTTTAGGGG-TTAG
* * **
33072697 GTTTTATGATTTAG
1 GGTTTAGGGGTTAG
33072711 GGTTTAGGGGTTAG
1 GGTTTAGGGGTTAG
33072725 GGT
1 GGT
33072728 AGATTAATTC
Statistics
Matches: 46, Mismatches: 13, Indels: 2
0.75 0.21 0.03
Matches are distributed among these distances:
14 38 0.83
15 8 0.17
ACGTcount: A:0.16, C:0.00, G:0.45, T:0.39
Consensus pattern (14 bp):
GGTTTAGGGGTTAG
Found at i:33080663 original size:3 final size:3
Alignment explanation
Indices: 33080657--33080697 Score: 82
Period size: 3 Copynumber: 13.7 Consensus size: 3
33080647 ACTATTATTT
33080657 ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC AT
1 ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC AT
33080698 TATTATTATT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 38 1.00
ACGTcount: A:0.34, C:0.32, G:0.00, T:0.34
Consensus pattern (3 bp):
ATC
Found at i:33080702 original size:3 final size:3
Alignment explanation
Indices: 33080696--33080998 Score: 271
Period size: 3 Copynumber: 101.7 Consensus size: 3
33080686 CATCATCATC
* * *
33080696 ATT ATT ATT ATT ATT ATT TTT ACT ATT ATT ATTT ATA ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A-TT ATT ATT ATT ATT
* * * *
33080742 ATT ATT ATT TTT ACT ATT ATTT ATT ATC ATT ATT ATT GTT -TCT ATT
1 ATT ATT ATT ATT ATT ATT A-TT ATT ATT ATT ATT ATT ATT AT-T ATT
* * *
33080788 ATT GTT ATT ATT -TT -TT ACT ATT ATT ATTT ATT ATC ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT A-TT ATT ATT ATT ATT ATT
* * * * *
33080832 ATT GTT ACT ATT ATT ATT ATT ATT ATT TTT ACT ATT ATTT ATT ATC
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A-TT ATT ATT
* * * *
33080878 ATT ATT ATT ACT ATT ATT ATTT ATT ATC ATT GTT ATC ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT A-TT ATT ATT ATT ATT ATT ATT ATT ATT
* * * *
33080924 ACT ATT ATT -TT ATT -TT ATT -TT TTT ACT ATG ATT ATT ATT -TT -TT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
* *
33080967 ATT ATT ACT ATT ATT ATT GTT ATT ATT ATT AT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
33080999 CATCATCATT
Statistics
Matches: 240, Mismatches: 48, Indels: 24
0.77 0.15 0.08
Matches are distributed among these distances:
2 15 0.06
3 209 0.87
4 16 0.07
ACGTcount: A:0.28, C:0.05, G:0.02, T:0.65
Consensus pattern (3 bp):
ATT
Found at i:33080746 original size:37 final size:36
Alignment explanation
Indices: 33080693--33080998 Score: 273
Period size: 37 Copynumber: 8.4 Consensus size: 36
33080683 CATCATCATC
33080693 ATCATTATTATTATTATTATTTTTACTATTATTATTT
1 ATCATTATTATTATTATTATTTTTACTATTATT-TTT
*
33080730 ATAATTATTATTATTATTATTTTTACTATTATTTATT
1 ATCATTATTATTATTATTATTTTTACTATTATTT-TT
* * **
33080767 ATCATTATTATTGTT-TCTATTATTGTTATTATTTTT
1 ATCATTATTATTATTAT-TATTTTTACTATTATTTTT
* ** * *
33080803 -T-ACTATTATTATTTATTATCATTATTATTATTGTT
1 ATCATTATTATTA-TTATTATTTTTACTATTATTTTT
33080838 A-CTATTATTATTATTATTATTTTTACTATTATTTATT
1 ATC-ATTATTATTATTATTATTTTTACTATTATTT-TT
* * * *
33080875 ATCATTATTATTACTATTATTATTTATTATCATTGTT
1 ATCATTATTATTATTATTATT-TTTACTATTATTTTT
* *
33080912 ATCATTATTATTACTATTA-TTTTA-TTTTATTTTT
1 ATCATTATTATTATTATTATTTTTACTATTATTTTT
* * * * *
33080946 TTACTATGATTATTATTTTTTATTATTACTATTATTATT
1 AT-C-ATTATTATTA-TTATTATTTTTACTATTATTTTT
* *
33080985 GTTATTATTATTAT
1 ATCATTATTATTAT
33080999 CATCATCATT
Statistics
Matches: 221, Mismatches: 33, Indels: 31
0.78 0.12 0.11
Matches are distributed among these distances:
34 16 0.07
35 24 0.11
36 33 0.15
37 124 0.56
38 15 0.07
39 9 0.04
ACGTcount: A:0.28, C:0.05, G:0.02, T:0.64
Consensus pattern (36 bp):
ATCATTATTATTATTATTATTTTTACTATTATTTTT
Found at i:33081038 original size:23 final size:22
Alignment explanation
Indices: 33081006--33081073 Score: 82
Period size: 23 Copynumber: 2.9 Consensus size: 22
33080996 TATCATCATC
33081006 ATTTCTTATTTTGTTTTATTTAAT
1 ATTT-TTATTTTGTTTTATTT-AT
*
33081030 ATTTTTATTTTGTTTTATTTTT
1 ATTTTTATTTTGTTTTATTTAT
*
33081052 ATTTTTATATATTGATTTATTT
1 ATTTTTAT-T-TTGTTTTATTT
33081074 TACAATTAGC
Statistics
Matches: 40, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
22 9 0.22
23 17 0.43
24 14 0.35
ACGTcount: A:0.21, C:0.01, G:0.04, T:0.74
Consensus pattern (22 bp):
ATTTTTATTTTGTTTTATTTAT
Found at i:33081064 original size:16 final size:16
Alignment explanation
Indices: 33081024--33081074 Score: 52
Period size: 16 Copynumber: 3.1 Consensus size: 16
33081014 TTTTGTTTTA
33081024 TTTA-ATATTTTTATT
1 TTTATATATTTTTATT
*
33081039 TTGT-TTTATTTTTATT
1 TT-TATATATTTTTATT
33081055 TTTATATATTGATTTATT
1 TTTATATATT--TTTATT
33081073 TT
1 TT
33081075 ACAATTAGCT
Statistics
Matches: 29, Mismatches: 2, Indels: 7
0.76 0.05 0.18
Matches are distributed among these distances:
15 3 0.10
16 18 0.62
18 8 0.28
ACGTcount: A:0.22, C:0.00, G:0.04, T:0.75
Consensus pattern (16 bp):
TTTATATATTTTTATT
Found at i:33086073 original size:26 final size:26
Alignment explanation
Indices: 33086044--33086096 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
33086034 CATTTTTCAT
33086044 AACCAAATAAAAATCATTCACAGTCA
1 AACCAAATAAAAATCATTCACAGTCA
* *
33086070 AACCAAATAAAAGTCATTCATAGTCA
1 AACCAAATAAAAATCATTCACAGTCA
33086096 A
1 A
33086097 TCATATTGTC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.53, C:0.21, G:0.06, T:0.21
Consensus pattern (26 bp):
AACCAAATAAAAATCATTCACAGTCA
Found at i:33088018 original size:31 final size:31
Alignment explanation
Indices: 33087982--33088040 Score: 118
Period size: 31 Copynumber: 1.9 Consensus size: 31
33087972 CCGTACGTTG
33087982 CTTTTCTTGATCTTTATAATCAAATTTATTA
1 CTTTTCTTGATCTTTATAATCAAATTTATTA
33088013 CTTTTCTTGATCTTTATAATCAAATTTA
1 CTTTTCTTGATCTTTATAATCAAATTTA
33088041 ACTCATTCAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.29, C:0.14, G:0.03, T:0.54
Consensus pattern (31 bp):
CTTTTCTTGATCTTTATAATCAAATTTATTA
Found at i:33108368 original size:48 final size:48
Alignment explanation
Indices: 33108312--33108404 Score: 150
Period size: 48 Copynumber: 1.9 Consensus size: 48
33108302 GAAGATGCTT
*
33108312 TTTCATCAAATAATAATAATGAAAGCTTCAAAGGTGATTGAAAACACG
1 TTTCATCAAATAATAAAAATGAAAGCTTCAAAGGTGATTGAAAACACG
* * *
33108360 TTTCATCAAATAATAAAAATGAATGCTTCAGAGGTGCTTGAAAAC
1 TTTCATCAAATAATAAAAATGAAAGCTTCAAAGGTGATTGAAAAC
33108405 GCATTTCAAC
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
48 41 1.00
ACGTcount: A:0.44, C:0.13, G:0.15, T:0.28
Consensus pattern (48 bp):
TTTCATCAAATAATAAAAATGAAAGCTTCAAAGGTGATTGAAAACACG
Found at i:33108412 original size:48 final size:48
Alignment explanation
Indices: 33108312--33108417 Score: 149
Period size: 48 Copynumber: 2.2 Consensus size: 48
33108302 GAAGATGCTT
* *
33108312 TTTCATCAAATAATAATAATGAAAGCTTCAAAGGTGATTGAAAACACG
1 TTTCATCAAATAATAAAAATGAAAGCTTCAAAGGTGATTGAAAACACA
* * * *
33108360 TTTCATCAAATAATAAAAATGAATGCTTCAGAGGTGCTTGAAAACGCA
1 TTTCATCAAATAATAAAAATGAAAGCTTCAAAGGTGATTGAAAACACA
*
33108408 TTTCAACAAA
1 TTTCATCAAA
33108418 CATGTTTTCT
Statistics
Matches: 51, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
48 51 1.00
ACGTcount: A:0.44, C:0.14, G:0.14, T:0.27
Consensus pattern (48 bp):
TTTCATCAAATAATAAAAATGAAAGCTTCAAAGGTGATTGAAAACACA
Found at i:33127488 original size:14 final size:14
Alignment explanation
Indices: 33127469--33127498 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
33127459 ATTCAACTGA
33127469 ACTAAAATGATTAT
1 ACTAAAATGATTAT
*
33127483 ACTAAAGTGATTAT
1 ACTAAAATGATTAT
33127497 AC
1 AC
33127499 ATACTAAATA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.47, C:0.10, G:0.10, T:0.33
Consensus pattern (14 bp):
ACTAAAATGATTAT
Found at i:33130013 original size:25 final size:24
Alignment explanation
Indices: 33129913--33130035 Score: 97
Period size: 25 Copynumber: 5.0 Consensus size: 24
33129903 GTACATGTAT
*
33129913 GCTCATACGAGCTGTAATCGGTAA
1 GCTCATACGAGCTGAAATCGGTAA
*
33129937 GCTCATATGAGCTGAGTAA-CGGTAA
1 GCTCATACGAGCTGA--AATCGGTAA
* ** ** *
33129962 ACTCACGCGAGCTGAATAAAGATAA
1 GCTCATACGAGCTGAA-ATCGGTAA
*
33129987 GCTCATACGAGCTGAGAATCGGCAA
1 GCTCATACGAGCTGA-AATCGGTAA
*
33130012 GC-CCTCACGAGCTGAAATCGGTAA
1 GCTCAT-ACGAGCTGAAATCGGTAA
33130036 CCCTAATGAC
Statistics
Matches: 76, Mismatches: 17, Indels: 12
0.72 0.16 0.11
Matches are distributed among these distances:
23 1 0.01
24 24 0.32
25 48 0.63
26 3 0.04
ACGTcount: A:0.33, C:0.22, G:0.25, T:0.20
Consensus pattern (24 bp):
GCTCATACGAGCTGAAATCGGTAA
Found at i:33143240 original size:25 final size:26
Alignment explanation
Indices: 33143209--33143300 Score: 102
Period size: 25 Copynumber: 3.7 Consensus size: 26
33143199 GTTGTAATCA
33143209 GTAAGCTCATACGAGCTGAGTAATA-
1 GTAAGCTCATACGAGCTGAGTAATAG
* *
33143234 GTAAGCTCATGCGAGCTGAATAA-AG
1 GTAAGCTCATACGAGCTGAGTAATAG
* * *
33143259 GTAAGCTTATACAAGTTGAG-AATAG
1 GTAAGCTCATACGAGCTGAGTAATAG
33143284 GTAAGCTC-TCACGAGCT
1 GTAAGCTCAT-ACGAGCT
33143301 AAAATCGGTA
Statistics
Matches: 54, Mismatches: 10, Indels: 6
0.77 0.14 0.09
Matches are distributed among these distances:
24 4 0.07
25 50 0.93
ACGTcount: A:0.35, C:0.16, G:0.25, T:0.24
Consensus pattern (26 bp):
GTAAGCTCATACGAGCTGAGTAATAG
Found at i:33145020 original size:12 final size:14
Alignment explanation
Indices: 33145005--33145036 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
33144995 GTGAAAACAC
33145005 ATGTGTA-G-TACT
1 ATGTGTAGGCTACT
33145017 ATGTGTAGGCTACT
1 ATGTGTAGGCTACT
33145031 ATGTGT
1 ATGTGT
33145037 TTAAAATGGT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 7 0.39
13 1 0.06
14 10 0.56
ACGTcount: A:0.22, C:0.09, G:0.28, T:0.41
Consensus pattern (14 bp):
ATGTGTAGGCTACT
Found at i:33145123 original size:50 final size:51
Alignment explanation
Indices: 33145002--33145133 Score: 149
Period size: 52 Copynumber: 2.6 Consensus size: 51
33144992 GTTGTGAAAA
* * **
33145002 CACATGTGTAGTACTATGTGTAGGCTACTATGTGTTTAAAATGGTTTTAGGT
1 CACATGTGTAGTACTAAGTGTAGGCTACTACGTGTACAAAATGG-TTTAGGT
* * ***
33145054 CACGTGTATAGTACTAAGTGTAGGCTACTACGTGTACCGGATGG-TTAGGT
1 CACATGTGTAGTACTAAGTGTAGGCTACTACGTGTACAAAATGGTTTAGGT
* *
33145104 CGCATGTGTAGTACTAAGTGCAGGCTACTA
1 CACATGTGTAGTACTAAGTGTAGGCTACTA
33145134 AGCGTACCCG
Statistics
Matches: 67, Mismatches: 13, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
50 32 0.48
52 35 0.52
ACGTcount: A:0.25, C:0.14, G:0.27, T:0.33
Consensus pattern (51 bp):
CACATGTGTAGTACTAAGTGTAGGCTACTACGTGTACAAAATGGTTTAGGT
Found at i:33145141 original size:50 final size:51
Alignment explanation
Indices: 33145048--33145184 Score: 159
Period size: 50 Copynumber: 2.7 Consensus size: 51
33145038 TAAAATGGTT
* * * * * *
33145048 TTAGGTCACGTGTATAGTACTAAGTGTAGGCTACTACGTGTACCGGAT-GG
1 TTAGGTCACATGTATAGTACTAAGTGCAGGCTACTAAGCGTACCCGATAGC
* *
33145098 TTAGGTCGCATGTGTAGTACTAAGTGCAGGCTACTAAGCGTACCCGATAGC
1 TTAGGTCACATGTATAGTACTAAGTGCAGGCTACTAAGCGTACCCGATAGC
* * * *
33145149 TTCGATCACATGTATGGTACTAAGTGCAGGCCACTA
1 TTAGGTCACATGTATAGTACTAAGTGCAGGCTACTA
33145185 TGTGTAAAAG
Statistics
Matches: 72, Mismatches: 14, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
50 41 0.57
51 31 0.43
ACGTcount: A:0.26, C:0.20, G:0.27, T:0.28
Consensus pattern (51 bp):
TTAGGTCACATGTATAGTACTAAGTGCAGGCTACTAAGCGTACCCGATAGC
Found at i:33158526 original size:74 final size:75
Alignment explanation
Indices: 33158405--33158557 Score: 256
Period size: 74 Copynumber: 2.0 Consensus size: 75
33158395 ATGGCCTAGC
33158405 ACACGGACGTGTAGCCTGGCCGTGTAGTTCAAATTGTTTTGCTGATGTCACAAAT-AGAGTTACA
1 ACACGGACGTGTAGCCTGGCCGTGTAGTTCAAATTGTTTTGCTGATGTCACAAATAAGAGTTACA
33158469 CGGGCTGAGG
66 CGGGCTGAGG
* *
33158479 ACACGGGA-GTGTGGCCTGGCCGTGTGGTTCAAATTGTTTTGCTGATGTCACAAATAGAGAGTTA
1 ACAC-GGACGTGTAGCCTGGCCGTGTAGTTCAAATTGTTTTGCTGATGTCACAAATA-AGAGTTA
33158543 CACGGGCTGAGG
64 CACGGGCTGAGG
33158555 ACA
1 ACA
33158558 TGGGCATGTC
Statistics
Matches: 74, Mismatches: 2, Indels: 4
0.93 0.03 0.05
Matches are distributed among these distances:
74 49 0.66
75 3 0.04
76 22 0.30
ACGTcount: A:0.24, C:0.18, G:0.31, T:0.26
Consensus pattern (75 bp):
ACACGGACGTGTAGCCTGGCCGTGTAGTTCAAATTGTTTTGCTGATGTCACAAATAAGAGTTACA
CGGGCTGAGG
Found at i:33168118 original size:19 final size:20
Alignment explanation
Indices: 33168081--33168118 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
33168071 ATAAGGTGGT
33168081 AAGATGATGAATGATGTTTA
1 AAGATGATGAATGATGTTTA
33168101 AAGATG-TGATAT-ATGTTT
1 AAGATGATGA-ATGATGTTT
33168119 TGGTGGTACC
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.37, C:0.00, G:0.24, T:0.39
Consensus pattern (20 bp):
AAGATGATGAATGATGTTTA
Found at i:33173561 original size:24 final size:24
Alignment explanation
Indices: 33173520--33173567 Score: 62
Period size: 26 Copynumber: 2.0 Consensus size: 24
33173510 ATGTATCTAT
33173520 ATATATATCATGTATAAATCATTTTC
1 ATATATATCATG-ATAAAT-ATTTTC
*
33173546 ATATATCTCATG-TAAATATTTT
1 ATATATATCATGATAAATATTTT
33173568 TGGTATTTCG
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
23 5 0.24
24 5 0.24
26 11 0.52
ACGTcount: A:0.38, C:0.10, G:0.04, T:0.48
Consensus pattern (24 bp):
ATATATATCATGATAAATATTTTC
Found at i:33190854 original size:30 final size:30
Alignment explanation
Indices: 33190818--33190874 Score: 114
Period size: 30 Copynumber: 1.9 Consensus size: 30
33190808 ACAATCTTCG
33190818 ACCAACCCAGTTCGCAGTTTCATTCATTCA
1 ACCAACCCAGTTCGCAGTTTCATTCATTCA
33190848 ACCAACCCAGTTCGCAGTTTCATTCAT
1 ACCAACCCAGTTCGCAGTTTCATTCAT
33190875 CATCCCAAGA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.26, C:0.33, G:0.11, T:0.30
Consensus pattern (30 bp):
ACCAACCCAGTTCGCAGTTTCATTCATTCA
Found at i:33211097 original size:22 final size:19
Alignment explanation
Indices: 33211069--33211110 Score: 57
Period size: 22 Copynumber: 2.1 Consensus size: 19
33211059 TGATAATCTT
33211069 TAATATATAATTATATCTATTA
1 TAATATAT-ATTA-AT-TATTA
33211091 TAATATATATTAATTATTA
1 TAATATATATTAATTATTA
33211110 T
1 T
33211111 CAACTTTGCA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
19 6 0.30
20 2 0.10
21 4 0.20
22 8 0.40
ACGTcount: A:0.45, C:0.02, G:0.00, T:0.52
Consensus pattern (19 bp):
TAATATATATTAATTATTA
Found at i:33211889 original size:25 final size:24
Alignment explanation
Indices: 33211822--33211889 Score: 57
Period size: 25 Copynumber: 2.7 Consensus size: 24
33211812 TTCTCCTAAA
* *
33211822 TTTTAATTTTATTCAATTATTTAAT
1 TTTTAA-TTAATTAAATTATTTAAT
* *
33211847 TTTTCAATTTATTGAATTATTAATAAT
1 TTTT-AATTAATTAAATTATT--TAAT
33211874 TTTT-ATTAATTAAATT
1 TTTTAATTAATTAAATT
33211890 TTTGAGAAAA
Statistics
Matches: 37, Mismatches: 3, Indels: 6
0.80 0.07 0.13
Matches are distributed among these distances:
25 27 0.73
26 2 0.05
27 8 0.22
ACGTcount: A:0.35, C:0.03, G:0.01, T:0.60
Consensus pattern (24 bp):
TTTTAATTAATTAAATTATTTAAT
Found at i:33218418 original size:17 final size:17
Alignment explanation
Indices: 33218396--33218428 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
33218386 GATATGATAC
33218396 TAAAAT-TATTAAAAAAT
1 TAAAATATA-TAAAAAAT
33218413 TAAAATATATAAAAAA
1 TAAAATATATAAAAAA
33218429 AATCTGGGAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
17 13 0.87
18 2 0.13
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (17 bp):
TAAAATATATAAAAAAT
Found at i:33218429 original size:18 final size:17
Alignment explanation
Indices: 33218396--33218429 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
33218386 GATATGATAC
*
33218396 TAAAATTATTAAAAAAT
1 TAAAATTATAAAAAAAT
33218413 TAAAATATATAAAAAAA
1 TAAAAT-TATAAAAAAA
33218430 ATCTGGGAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (17 bp):
TAAAATTATAAAAAAAT
Found at i:33218720 original size:22 final size:21
Alignment explanation
Indices: 33218685--33218760 Score: 59
Period size: 22 Copynumber: 3.7 Consensus size: 21
33218675 AAAAGGTATC
* *
33218685 TACAAATTAAATCTCTAAGAT
1 TACAAATCATATCTCTAAGAT
*
33218706 TACAAAATCATATCTTTTAAGAT
1 TAC-AAATCATATC-TCTAAGAT
* *
33218729 TTCATATCATA--TCTAAGAT
1 TACAAATCATATCTCTAAGAT
*
33218748 TGC-AATCATATCT
1 TACAAATCATATCT
33218761 AAGATTGTAT
Statistics
Matches: 43, Mismatches: 8, Indels: 9
0.72 0.13 0.15
Matches are distributed among these distances:
18 6 0.14
19 9 0.21
20 1 0.02
21 3 0.07
22 15 0.35
23 9 0.21
ACGTcount: A:0.41, C:0.16, G:0.05, T:0.38
Consensus pattern (21 bp):
TACAAATCATATCTCTAAGAT
Found at i:33218747 original size:19 final size:19
Alignment explanation
Indices: 33218723--33218811 Score: 148
Period size: 19 Copynumber: 4.8 Consensus size: 19
33218713 TCATATCTTT
*
33218723 TAAGATTTCATATCATATC
1 TAAGATTGCATATCATATC
33218742 TAAGATTGCA-ATCATATC
1 TAAGATTGCATATCATATC
33218760 TAAGATTG--TATCATATC
1 TAAGATTGCATATCATATC
33218777 TAAGATTGCATATCATATC
1 TAAGATTGCATATCATATC
33218796 TAAGATTGCATATCAT
1 TAAGATTGCATATCAT
33218812 TGAAGATTAT
Statistics
Matches: 66, Mismatches: 1, Indels: 6
0.90 0.01 0.08
Matches are distributed among these distances:
17 16 0.24
18 16 0.24
19 34 0.52
ACGTcount: A:0.37, C:0.15, G:0.10, T:0.38
Consensus pattern (19 bp):
TAAGATTGCATATCATATC
Found at i:33218819 original size:36 final size:37
Alignment explanation
Indices: 33218723--33218811 Score: 146
Period size: 35 Copynumber: 2.4 Consensus size: 37
33218713 TCATATCTTT
*
33218723 TAAGATTTCATATCATATCTAAGATTGCAATCATATC
1 TAAGATTGCATATCATATCTAAGATTGCAATCATATC
33218760 TAAGATTG--TATCATATCTAAGATTGCATATCATATC
1 TAAGATTGCATATCATATCTAAGATTGCA-ATCATATC
33218796 TAAGATTGCATATCAT
1 TAAGATTGCATATCAT
33218812 TGAAGATTAT
Statistics
Matches: 48, Mismatches: 1, Indels: 5
0.89 0.02 0.09
Matches are distributed among these distances:
35 19 0.40
36 16 0.33
37 7 0.15
38 6 0.12
ACGTcount: A:0.37, C:0.15, G:0.10, T:0.38
Consensus pattern (37 bp):
TAAGATTGCATATCATATCTAAGATTGCAATCATATC
Found at i:33219213 original size:45 final size:45
Alignment explanation
Indices: 33219162--33219390 Score: 209
Period size: 45 Copynumber: 5.1 Consensus size: 45
33219152 GGAAGGCGAT
* * *
33219162 ATCTGCTATCTTTGATCTGCTCCCCGTCTAATATAGAGACGCCAA
1 ATCTGCTATCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAA
*
33219207 ATCTGCT-TCTTCAATCTGCTCCCCGTCTAATACAGAGATGCCAA
1 ATCTGCTATCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAA
* * * *
33219251 ATCTGTTATC-TCTGATTTACTCCCCGTCTAATACCGAGATGCCAA
1 ATCTGCTATCTTC-GATCTGCTCCCCGTCTAATACAGAGATGCCAA
* * * * * *
33219296 ATCTG-TCATCTTGGATCTGCT--TCGATGTAA-ACACATGAAGGTCAA
1 ATCTGCT-ATCTTCGATCTGCTCCCCG-TCTAATACAGA-G-ATGCCAA
* *
33219341 ATCTGCTATGTCTTCGATCTGCTCCCCGTATAATATAGAGATGCCAA
1 ATCTGCTA--TCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAA
33219388 ATC
1 ATC
33219391 ATCTTGGATC
Statistics
Matches: 146, Mismatches: 25, Indels: 24
0.75 0.13 0.12
Matches are distributed among these distances:
43 5 0.03
44 47 0.32
45 62 0.42
46 2 0.01
47 20 0.14
48 5 0.03
49 5 0.03
ACGTcount: A:0.26, C:0.27, G:0.16, T:0.31
Consensus pattern (45 bp):
ATCTGCTATCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAA
Found at i:33219459 original size:78 final size:78
Alignment explanation
Indices: 33219330--33219624 Score: 441
Period size: 78 Copynumber: 3.8 Consensus size: 78
33219320 ATGTAAACAC
* * *
33219330 ATGAAGGTCAA-ATCTGCTATGTCTTCGATCTGCTCCCCGTATAATATAGAGATGCCAAATCATC
1 ATGAAGGT-AAGATCTACTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATC
33219394 TTGGATCTGCTTCA
65 TTGGATCTGCTTCA
* ** *
33219408 ATGAAGGTCCA-ATCTGTTATGTCTTTGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATC
1 ATGAAGGT-AAGATCTACTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATC
33219472 TTGGATCTGCTTCA
65 TTGGATCTGCTTCA
*
33219486 ATGAAGGTAAGATCTACTGTGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
1 ATGAAGGTAAGATCTACTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
33219551 TGGATCTGCTTCA
66 TGGATCTGCTTCA
* * * **
33219564 ATGAAGGTCAGATCTACTATGTCTTCGATCTGCTCTCCGTCAAATATGGAGATGCCAAATC
1 ATGAAGGTAAGATCTACTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATC
33219625 TGTTTCTTCG
Statistics
Matches: 200, Mismatches: 16, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
77 1 0.00
78 199 1.00
ACGTcount: A:0.26, C:0.24, G:0.19, T:0.32
Consensus pattern (78 bp):
ATGAAGGTAAGATCTACTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
TGGATCTGCTTCA
Found at i:33219928 original size:217 final size:217
Alignment explanation
Indices: 33219566--33220166 Score: 950
Period size: 217 Copynumber: 2.7 Consensus size: 217
33219556 CTGCTTCAAT
* * * *
33219566 GAAGGTCAGATCTACTATGTCTTCGATCTGCTCTCCGTCAAATATGGAGATGCCAAATCTGTTTC
1 GAAGGTTAGATCTGCTATGTCTTCGATCTGCTCTCCGTCAAATATAGAGATGCCAAATCTATTTC
* *
33219631 TTCGATTTTTTCTCTGACAGTACAGAGATGCCAAATCATCTTAGATCTGCTTCAGCGTAAAAACG
66 TTCGA---TTTGTCTGACAGTACAGAGATGCCAAATCATCTTAGATCTGCTTCAGCGTAAACACG
*
33219696 TGAAAGCCAAATCTGCTATCTCTTCGATCTGCTCCTTATCAACGCAAGGATGCCAAATCATCTTG
128 TGAAAGCCAAATCTGCTATGTCTTCGATCTGCTCCTTATCAACGCAAGGATGCCAAATCATCTTG
* *
33219761 GATCTACTTCGATGTGAAGACATTC
193 GATCTACTTCGATGTGAAAACATCC
33219786 GAAGGTTAGATCTGCTATGTCTTCGATCTGCTCTCCGTCAAATATAGAGATGCCAAATCTATTTC
1 GAAGGTTAGATCTGCTATGTCTTCGATCTGCTCTCCGTCAAATATAGAGATGCCAAATCTATTTC
* * ** *
33219851 TTCGATTTGTCTGTCAATACAGAGATGTTAAATCATCTTAGATCTGCTTTAGCGTAAACACGTGA
66 TTCGATTTGTCTGACAGTACAGAGATGCCAAATCATCTTAGATCTGCTTCAGCGTAAACACGTGA
* * *
33219916 AAGCCAAATCTGCTATGTCTTTGATCTGCTCCTTGTCAATGCAAGGATGCCAAATCATCTTGGAT
131 AAGCCAAATCTGCTATGTCTTCGATCTGCTCCTTATCAACGCAAGGATGCCAAATCATCTTGGAT
33219981 CTACTTCGATGTGAAAACATCC
196 CTACTTCGATGTGAAAACATCC
* *
33220003 GAAGGTTAGATCTGCTATGTCTTCTATCTGCTCTCCGTCGAATATAGAGATGCCAAATCTATTTC
1 GAAGGTTAGATCTGCTATGTCTTCGATCTGCTCTCCGTCAAATATAGAGATGCCAAATCTATTTC
* *
33220068 TTCGATTTGTTCTCTGACAGTACAGAGATGCCAAAACATCTTAGATCTACTTCAGCGTAAACACG
66 TTCGATTTG---TCTGACAGTACAGAGATGCCAAATCATCTTAGATCTGCTTCAGCGTAAACACG
*
33220133 TGAAAGCCAAATCTACTATGTCTTCGATCTGCTC
128 TGAAAGCCAAATCTGCTATGTCTTCGATCTGCTC
33220167 TCCGTCGAAT
Statistics
Matches: 350, Mismatches: 28, Indels: 6
0.91 0.07 0.02
Matches are distributed among these distances:
217 206 0.59
220 144 0.41
ACGTcount: A:0.27, C:0.23, G:0.18, T:0.32
Consensus pattern (217 bp):
GAAGGTTAGATCTGCTATGTCTTCGATCTGCTCTCCGTCAAATATAGAGATGCCAAATCTATTTC
TTCGATTTGTCTGACAGTACAGAGATGCCAAATCATCTTAGATCTGCTTCAGCGTAAACACGTGA
AAGCCAAATCTGCTATGTCTTCGATCTGCTCCTTATCAACGCAAGGATGCCAAATCATCTTGGAT
CTACTTCGATGTGAAAACATCC
Found at i:33220096 original size:43 final size:43
Alignment explanation
Indices: 33220048--33220250 Score: 121
Period size: 43 Copynumber: 4.7 Consensus size: 43
33220038 CGTCGAATAT
* *
33220048 AGAGATGCCAAATCTATTTCTTCGATTTGTTCTCTGACAGTAC
1 AGAGATGCCAAATCTATTTCTTCGATCTGCTCTCTGACAGTAC
* * * *
33220091 AGAGATGCCAAAAC-A--TCTTAGATCTACT-TCAG-C-GTAAAC
1 AGAGATGCCAAATCTATTTCTTCGATCTGCTCTCTGACAGT--AC
* * * * * *
33220130 ACGTGAAAGCCAAATCTACTATGTCTTCGATCTGCTCTCCGTCGAATAT
1 A-GAG-ATGCCAAATCTA-T-T-TCTTCGATCTGCTCTCTGAC-AGTAC
* * * * *
33220179 GGAGATGCCAATTCTTTTTCTTCGATTTGTTCTCTGACAGTAC
1 AGAGATGCCAAATCTATTTCTTCGATCTGCTCTCTGACAGTAC
*
33220222 AGAGATGCCAAATCTGTTATCTTCGATCT
1 AGAGATGCCAAATCTATT-TCTTCGATCT
33220251 ACTCCCCATC
Statistics
Matches: 116, Mismatches: 29, Indels: 29
0.67 0.17 0.17
Matches are distributed among these distances:
37 2 0.02
38 1 0.01
39 6 0.05
40 11 0.09
41 8 0.07
42 2 0.02
43 31 0.27
44 25 0.22
45 1 0.01
46 1 0.01
47 20 0.17
48 5 0.04
49 2 0.02
51 1 0.01
ACGTcount: A:0.27, C:0.23, G:0.17, T:0.33
Consensus pattern (43 bp):
AGAGATGCCAAATCTATTTCTTCGATCTGCTCTCTGACAGTAC
Found at i:33220271 original size:45 final size:45
Alignment explanation
Indices: 33220153--33220461 Score: 252
Period size: 45 Copynumber: 6.9 Consensus size: 45
33220143 ATCTACTATG
* * ** * *
33220153 TCTTCGATCTGCTCTCCGTCGAATATGGAGATGCCAATTCT-TTT
1 TCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCTGTTA
* * * * * *
33220197 TCTTCGATTTGTTCTCTGAC-AGTACAGAGATGCCAAATCTGTTA
1 TCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCTGTTA
* * *
33220241 TCTTCGATCTACTCCCCATCTAATACAGAGACGCCAAATCTGCTTA
1 TCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCTG-TTA
*
33220287 --TTCAATCTGCTCCCCGTCTAATACAGAGATGCCAAATCTGTTA
1 TCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCTGTTA
* * * *
33220330 TCTCCGATTTGCTCCCCGTCTAATACAGAGATGTCAAATCTGTCA
1 TCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCTGTTA
* * ** * * * * * *
33220375 TCTTGGATCTGCT-TCAATGTAA-ACACATGAAGGTCAGATCTGCTATG
1 TCTTCGATCTGCTCCCCGTCTAATACAGA-G-ATGCCAAATCTG-T-TA
*
33220422 TCTTTGATCTGCTCCCCGTCTAATACAGAGATGCCAAATC
1 TCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATC
33220462 ATCTTGGATC
Statistics
Matches: 206, Mismatches: 48, Indels: 19
0.75 0.18 0.07
Matches are distributed among these distances:
43 23 0.11
44 73 0.35
45 77 0.37
46 4 0.02
47 19 0.09
48 6 0.03
49 4 0.02
ACGTcount: A:0.25, C:0.26, G:0.16, T:0.32
Consensus pattern (45 bp):
TCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCTGTTA
Found at i:33220449 original size:92 final size:84
Alignment explanation
Indices: 33220339--33220616 Score: 337
Period size: 78 Copynumber: 3.4 Consensus size: 84
33220329 ATCTCCGATT
*
33220339 TGCTCCCCGTCTAATACAGAGATGTCAAATCTGTCATCTTGGATCTGCTTCAATGTAAACACATG
1 TGCTCCCCGTCTAATACAGAGATGCCAAA----TCATCTTGGATCTGCTTCAATGT---CA-ATG
33220404 AAGGTCAGATCTGCTATGTCTTTGATC
58 AAGGTCAGATCTGCTATGTCTTTGATC
33220431 TGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTGGATCTG---C--T-TCAATGAAGGTCAG
1 TGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTGGATCTGCTTCAATGTCAATGAAGGTCAG
*
33220490 ATCTGCTGTGTCTTTGATC
66 ATCTGCTATGTCTTTGATC
*
33220509 TGCTCCCTGTCTAATACAGAGATGCCAAATCATCTTGGATCTG---C--T-TCAATGAAGGTCAG
1 TGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTGGATCTGCTTCAATGTCAATGAAGGTCAG
33220568 ATCTGCTATGTCTTTGATC
66 ATCTGCTATGTCTTTGATC
* * **
33220587 TGCTCTCCGTCGAATATGGAGATGCCAAAT
1 TGCTCCCCGTCTAATACAGAGATGCCAAAT
33220617 TTGTTTCTTT
Statistics
Matches: 177, Mismatches: 9, Indels: 14
0.88 0.05 0.07
Matches are distributed among these distances:
78 130 0.73
79 2 0.01
82 1 0.01
83 1 0.01
85 1 0.01
88 14 0.08
92 28 0.16
ACGTcount: A:0.25, C:0.23, G:0.20, T:0.32
Consensus pattern (84 bp):
TGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTGGATCTGCTTCAATGTCAATGAAGGTCAG
ATCTGCTATGTCTTTGATC
Found at i:33220530 original size:78 final size:77
Alignment explanation
Indices: 33220401--33220616 Score: 369
Period size: 78 Copynumber: 2.8 Consensus size: 77
33220391 ATGTAAACAC
33220401 ATGAAGGTCAGATCTGCTATGTCTTTGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
1 ATGAAGGTCAGATCTGCTATGTCTTTGATCTGCT-CCCGTCTAATACAGAGATGCCAAATCATCT
33220466 TGGATCTGCTTCA
65 TGGATCTGCTTCA
*
33220479 ATGAAGGTCAGATCTGCTGTGTCTTTGATCTGCTCCCTGTCTAATACAGAGATGCCAAATCATCT
1 ATGAAGGTCAGATCTGCTATGTCTTTGATCTGCTCCC-GTCTAATACAGAGATGCCAAATCATCT
33220544 TGGATCTGCTTCA
65 TGGATCTGCTTCA
* **
33220557 ATGAAGGTCAGATCTGCTATGTCTTTGATCTGCTCTCCGTCGAATATGGAGATGCCAAAT
1 ATGAAGGTCAGATCTGCTATGTCTTTGATCTGCTC-CCGTCTAATACAGAGATGCCAAAT
33220617 TTGTTTCTTT
Statistics
Matches: 131, Mismatches: 5, Indels: 4
0.94 0.04 0.03
Matches are distributed among these distances:
77 3 0.02
78 126 0.96
79 2 0.02
ACGTcount: A:0.24, C:0.23, G:0.21, T:0.32
Consensus pattern (77 bp):
ATGAAGGTCAGATCTGCTATGTCTTTGATCTGCTCCCGTCTAATACAGAGATGCCAAATCATCTT
GGATCTGCTTCA
Found at i:33220590 original size:37 final size:37
Alignment explanation
Indices: 33220463--33220590 Score: 91
Period size: 37 Copynumber: 3.4 Consensus size: 37
33220453 TGCCAAATCA
*
33220463 TCTTGGATCTGCTTCAATGAAGGTCAGATCTGCTGTG
1 TCTTGGATCTGCTTCAATGAAGGTCAGATCTGCTATG
* ** ** * *
33220500 TCTTTGATCTGC-TCCCTGTCTAA--TACAGAGATGCCAAATCA
1 TCTTGGATCTGCTTCAATG---AAGGT-CAGATCTG-C-TAT-G
33220541 TCTTGGATCTGCTTCAATGAAGGTCAGATCTGCTATG
1 TCTTGGATCTGCTTCAATGAAGGTCAGATCTGCTATG
*
33220578 TCTTTGATCTGCT
1 TCTTGGATCTGCT
33220591 CTCCGTCGAA
Statistics
Matches: 65, Mismatches: 16, Indels: 20
0.64 0.16 0.20
Matches are distributed among these distances:
36 4 0.06
37 24 0.37
38 8 0.12
39 6 0.09
40 7 0.11
41 12 0.18
42 4 0.06
ACGTcount: A:0.21, C:0.22, G:0.21, T:0.36
Consensus pattern (37 bp):
TCTTGGATCTGCTTCAATGAAGGTCAGATCTGCTATG
Found at i:33220689 original size:556 final size:555
Alignment explanation
Indices: 33220003--33221556 Score: 1877
Period size: 556 Copynumber: 2.8 Consensus size: 555
33219993 GAAAACATCC
* * *
33220003 GAAGGTTAGATCTGCTATGTCTTCT-ATCTGCTCTCCGTCGAATATAGAGATGCCAAATCTATTT
1 GAAGGTCAGATCTGCTATGTCTT-TGATCTGCTCTCCGTCGAATATGGAGATGCCAAATCTGTTT
* * *
33220067 CTTCGATTTGTTCTCTGACAGTACAGAGATGCCAAAACATCTTAGATCTACTTCAGCGTAAACAC
65 CTTCGATTTGTTCTCTGACAGTACAGAGATGCCAAATCATCTTAGATCTGCTTCAACGTAAACAC
* * * *
33220132 GTGAAAGCCAAATCTACTATGTCTTCGATCTGCTC-TCCGTCGAA--TATGGAGATGCCAATTC-
130 GTGAAAGCCAAATCTGCTATGTCTTCGATCTGCTCAT-CGTC-AACGCA-AG-GATGCCAAATCA
* * * * ** *
33220193 TTTTTCTTCGA-TTTGTTCT-CTGACAGTACAGAGATGCCAAATCTGTTA-TCTTCGATCTACTC
191 TCTTGCATCGACTTTGATCTGAAGACA-T-CAGA-AGGCCAAATCTGTTAGTCTTCGATCTACTC
* *
33220255 CCCATCTAATACAGAGACGCCAAATCTGCTTATTCAATCTGCTCCCCGTCTAATACAGAGATGCC
253 CCCATCAAATACAGAGACGCCAAATCTGCTTATTCAATCTGCTCCCCGAC-AATACAGAGATGCC
* * *
33220320 AAATCTGTTATCTCCGATTTGCTCCCCGTCTAATACAGAGATGTCAAATCTGTCATCTTGGATCT
317 AAATCTGTTATCTCCGATTTGCTCCCCATCTAATAAAGAGATGCCAAATCTGTCATCTTGGATCT
33220385 GCTTCAATGTAAACACATGAAGGTCAGATCTGCTATGTCTTTGATCTGCTCCCCGTCTAATACAG
382 GCTTCAATGTAAACACATGAAGGTCAGATCTGCTATGTCTTTGATCTGCTCCCCGTCTAATACAG
*
33220450 AGATGCCAAATCATCTTGGATCTGCTTCAATGAAGGT-CAGATCTGCTGTGTCTTTGATCTGCTC
447 AGATGCCAAATCATCTTGGATCTGCTTCAATGAAGGTCCA-ATCTGCTATGTCTTTGATCTGCTC
*
33220514 CCTGTCTAATACAGAGATGCCAAATCATCTTGGATCTGCTTCAAT
511 CCCGTCTAATACAGAGATGCCAAATCATCTTGGATCTGCTTCAAT
*
33220559 GAAGGTCAGATCTGCTATGTCTTTGATCTGCTCTCCGTCGAATATGGAGATGCCAAATTTGTTTC
1 GAAGGTCAGATCTGCTATGTCTTTGATCTGCTCTCCGTCGAATATGGAGATGCCAAATCTGTTTC
* * *
33220624 TTTGATTTGTTCTCTGACAGTACAGAGATGCTAAATCATCCTAGATCTGCTTCAACGTAAACACG
66 TTCGATTTGTTCTCTGACAGTACAGAGATGCCAAATCATCTTAGATCTGCTTCAACGTAAACACG
*
33220689 TGAAAGCCAAATCTGCTATGTCTTCGATCTGCTCATTGTCAACGCAAGGATGCCAAATCATCTTG
131 TGAAAGCCAAATCTGCTATGTCTTCGATCTGCTCATCGTCAACGCAAGGATGCCAAATCATCTTG
* * * * ** * * * *
33220754 GATCTACTTTGATGTGAAGACATCTGAAGGTTAGATCTGTTATGTCTTCGATCTGCTCTCCGTCA
196 CATCGACTTTGATCTGAAGACATCAGAAGGCCAAATCTGTTA-GTCTTCGATCTACTCCCCATCA
** * * * * * * * * **
33220819 AATATGGAGATGCCAAATCTGTTTCTTCGATTTTCTCTCTGACAATACAGAGATGTTAAATCTGT
260 AATACAGAGACGCCAAATCTGCTTATTCAATCTGCTCCCCGACAATACAGAGATGCCAAATCTGT
** ** * * *
33220884 TATCTTTGATTTGCTCTGCATCTAATAAAGAGATGCCAAATTTTTCATCTTGGATCTGCTTCGAT
325 TATCTCCGATTTGCTCCCCATCTAATAAAGAGATGCCAAATCTGTCATCTTGGATCTGCTTCAAT
33220949 GTAAACACATGAAGGTCAGATCTGCTATGTCTTTGATCTGCTCCCCGTCTAATACAGAGATGCCA
390 GTAAACACATGAAGGTCAGATCTGCTATGTCTTTGATCTGCTCCCCGTCTAATACAGAGATGCCA
* * * *
33221014 AATCATCTTGGATCTGCTTCAATGAAGGTCCACTCTGTTATGTTTTTTATCTGCTCCCCGTCTAA
455 AATCATCTTGGATCTGCTTCAATGAAGGTCCAATCTGCTATGTCTTTGATCTGCTCCCCGTCTAA
33221079 TACAGAGATGCCAAATCATCTTGGATCTGCTTCAAT
520 TACAGAGATGCCAAATCATCTTGGATCTGCTTCAAT
* * *
33221115 GAAGGTCAGATCTACTATGTCTTCGATCTGCTCTCCGTCAAATATGGAGATGCCAAATCTGTTTC
1 GAAGGTCAGATCTGCTATGTCTTTGATCTGCTCTCCGTCGAATATGGAGATGCCAAATCTGTTTC
* * *
33221180 TTCAATTTTTTCTCTGACAGTACAGAGATGCCAAATCATCTTAGATCTGCTTCAACATAAACACG
66 TTCGATTTGTTCTCTGACAGTACAGAGATGCCAAATCATCTTAGATCTGCTTCAACGTAAACACG
* * * **
33221245 TGAAAGCCAAATCTGCTATCTCTTCGATCTACTCCTTATCAACGCAAGGATGCCAAATCATCTTG
131 TGAAAGCCAAATCTGCTATGTCTTCGATCTGCTCATCGTCAACGCAAGGATGCCAAATCATCTTG
* * * * ** * * * * *
33221310 GATCTACTTCGATGTGAAGACATTC-GAAGGTTAGATCTGCTATGTCTTCGATCTGCTCTCCGTC
196 CATCGACTTTGATCTGAAGACA-TCAGAAGGCCAAATCTGTTA-GTCTTCGATCTACTCCCCATC
** * * * * * * * **
33221374 AAATATGGAGATGCCAAATCTGTTTCTTCGATTTG-T--CTGTCAATACAGAGATGTTAAATCTG
259 AAATACAGAGACGCCAAATCTGCTTATTCAATCTGCTCCCCGACAATACAGAGATGCCAAATCTG
*
33221436 TTATCTCCGATTTGCT---C--C----------ATGCCAAATCTGTCATCTTGGATCTGCTTCGA
324 TTATCTCCGATTTGCTCCCCATCTAATAAAGAGATGCCAAATCTGTCATCTTGGATCTGCTTCAA
* * * * **
33221486 TGTAAACACATGAAGGTCAAATCTGCTATGTCTTCGATCTGCTCTCCGTCGAATATGGAGATGCC
389 TGTAAACACATGAAGGTCAGATCTGCTATGTCTTTGATCTGCTCCCCGTCTAATACAGAGATGCC
33221551 AAATCA
454 AAATCA
33221557 GTTTCTTCGA
Statistics
Matches: 897, Mismatches: 90, Indels: 40
0.87 0.09 0.04
Matches are distributed among these distances:
538 95 0.11
548 1 0.00
550 1 0.00
553 39 0.04
555 25 0.03
556 670 0.75
557 62 0.07
558 4 0.00
ACGTcount: A:0.26, C:0.23, G:0.18, T:0.33
Consensus pattern (555 bp):
GAAGGTCAGATCTGCTATGTCTTTGATCTGCTCTCCGTCGAATATGGAGATGCCAAATCTGTTTC
TTCGATTTGTTCTCTGACAGTACAGAGATGCCAAATCATCTTAGATCTGCTTCAACGTAAACACG
TGAAAGCCAAATCTGCTATGTCTTCGATCTGCTCATCGTCAACGCAAGGATGCCAAATCATCTTG
CATCGACTTTGATCTGAAGACATCAGAAGGCCAAATCTGTTAGTCTTCGATCTACTCCCCATCAA
ATACAGAGACGCCAAATCTGCTTATTCAATCTGCTCCCCGACAATACAGAGATGCCAAATCTGTT
ATCTCCGATTTGCTCCCCATCTAATAAAGAGATGCCAAATCTGTCATCTTGGATCTGCTTCAATG
TAAACACATGAAGGTCAGATCTGCTATGTCTTTGATCTGCTCCCCGTCTAATACAGAGATGCCAA
ATCATCTTGGATCTGCTTCAATGAAGGTCCAATCTGCTATGTCTTTGATCTGCTCCCCGTCTAAT
ACAGAGATGCCAAATCATCTTGGATCTGCTTCAAT
Found at i:33220857 original size:44 final size:44
Alignment explanation
Indices: 33220788--33220924 Score: 123
Period size: 44 Copynumber: 3.0 Consensus size: 44
33220778 TGAAGGTTAG
* **
33220788 ATCTGTTATGTCTTCGATCTGCTCTCCGTCAAATATGGAGATGCCAA
1 ATCTGTTA--TCTTCGATTTGCTCTCCGTC-AATAAAGAGATGCCAA
* * * * **
33220835 ATCTGTT-TCTTCGATTTTCTCTCTGACAATACAGAGATGTTAA
1 ATCTGTTATCTTCGATTTGCTCTCCGTCAATAAAGAGATGCCAA
* * *
33220878 ATCTGTTATCTTTGATTTGCTCTGCATCTAATAAAGAGATGCCAA
1 ATCTGTTATCTTCGATTTGCTCTCCGTC-AATAAAGAGATGCCAA
33220923 AT
1 AT
33220925 TTTTCATCTT
Statistics
Matches: 71, Mismatches: 17, Indels: 6
0.76 0.18 0.06
Matches are distributed among these distances:
43 19 0.27
44 30 0.42
45 15 0.21
47 7 0.10
ACGTcount: A:0.26, C:0.20, G:0.16, T:0.38
Consensus pattern (44 bp):
ATCTGTTATCTTCGATTTGCTCTCCGTCAATAAAGAGATGCCAA
Found at i:33221086 original size:78 final size:78
Alignment explanation
Indices: 33220969--33221173 Score: 304
Period size: 78 Copynumber: 2.6 Consensus size: 78
33220959 GAAGGTCAGA
33220969 TCTGCTATGTCTTTGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTGGATCTGCTTC
1 TCTGCTATGTCTTTGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTGGATCTGCTTC
33221034 AATGAAGGTCCAC
66 AATGAAGGTCCAC
* * *
33221047 TCTGTTATGTTTTTTATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTGGATCTGCTTC
1 TCTGCTATGTCTTTGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTGGATCTGCTTC
*
33221112 AATGAAGGT-CAGA
66 AATGAAGGTCCA-C
* * * * **
33221125 TCTACTATGTCTTCGATCTGCTCTCCGTCAAATATGGAGATGCCAAATC
1 TCTGCTATGTCTTTGATCTGCTCCCCGTCTAATACAGAGATGCCAAATC
33221174 TGTTTCTTCA
Statistics
Matches: 113, Mismatches: 13, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
77 2 0.02
78 111 0.98
ACGTcount: A:0.24, C:0.25, G:0.18, T:0.34
Consensus pattern (78 bp):
TCTGCTATGTCTTTGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTGGATCTGCTTC
AATGAAGGTCCAC
Found at i:33221854 original size:133 final size:133
Alignment explanation
Indices: 33221680--33221967 Score: 513
Period size: 133 Copynumber: 2.2 Consensus size: 133
33221670 GCAAGGATGC
33221680 TAAATCATCTTGGATCTACTTCGATGTGAAGACATCCGAAGGTTAGATCTGCTATGTCTTCGATC
1 TAAATCATCTTGGATCTACTTCGATGTGAAGACATCCGAAGGTTAGATCTGCTATGTCTTCGATC
* *
33221745 TGCTCTCCATCGAATATGGAGATGCCAAATCTATTTCTTCGATTTGTTCTCTGACAATACAGAAA
66 TACTCTCCATCGAATATGGAGAGGCCAAATCTATTTCTTCGATTTGTTCTCTGACAATACAGAAA
33221810 TGT
131 TGT
*
33221813 TAAATCATCTTGGATCTACTTCGATGTGAAGACATCTGAAGGTTAGATCTGCTATGTCTTCGATC
1 TAAATCATCTTGGATCTACTTCGATGTGAAGACATCCGAAGGTTAGATCTGCTATGTCTTCGATC
* * *
33221878 TACTCTCCGTCGAATATGGAGAGGCCAAATCTATTTTTTCGATTTGTTCTCTGATAATACAGAAA
66 TACTCTCCATCGAATATGGAGAGGCCAAATCTATTTCTTCGATTTGTTCTCTGACAATACAGAAA
33221943 TGT
131 TGT
*
33221946 TAAATCATCTTGGATCCACTTC
1 TAAATCATCTTGGATCTACTTC
33221968 AGTGTAAACA
Statistics
Matches: 148, Mismatches: 7, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
133 148 1.00
ACGTcount: A:0.27, C:0.20, G:0.18, T:0.35
Consensus pattern (133 bp):
TAAATCATCTTGGATCTACTTCGATGTGAAGACATCCGAAGGTTAGATCTGCTATGTCTTCGATC
TACTCTCCATCGAATATGGAGAGGCCAAATCTATTTCTTCGATTTGTTCTCTGACAATACAGAAA
TGT
Found at i:33229585 original size:13 final size:13
Alignment explanation
Indices: 33229567--33229591 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
33229557 AAAATATCAT
33229567 AGTTTTCAAATTG
1 AGTTTTCAAATTG
33229580 AGTTTTCAAATT
1 AGTTTTCAAATT
33229592 TCGATAAAAG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.08, G:0.12, T:0.48
Consensus pattern (13 bp):
AGTTTTCAAATTG
Found at i:33230474 original size:139 final size:138
Alignment explanation
Indices: 33230248--33230550 Score: 477
Period size: 139 Copynumber: 2.2 Consensus size: 138
33230238 ATTAATATAA
* * *
33230248 ACAAAATATTAATTGTATATATTTTATCTAATTTATTAATATAAAAAGTTATATTAATTAGTTTC
1 ACAAAATATTAATTGTATATATTTTAGCAAATTTATTAATATAAAAAGTTATATTAATTAATTTC
*
33230313 GATCAAAATATAAAAGACATGAAAATTAAAATTCTTTTGGAAAGAATATCATTAATATATGAATT
66 GATCAAAATATAAAAGACATGAAAATTAAAATTCTTTTGGAAAGAATATAATTAATATATGAATT
33230378 TAATTCAT
131 TAATTCAT
*
33230386 ACAAAAATATTCATTGTATATATTTTAGCAAATTTATTAATATAAACAA-TTATATTAA-TACAT
1 AC-AAAATATTAATTGTATATATTTTAGCAAATTTATTAATATAAA-AAGTTATATTAATTA-AT
*
33230449 TTC-AGTCAAAATATAAAAGACATGAAAATTAATATTCTTTTGGAAAGAATATAATTAATATATG
63 TTCGA-TCAAAATATAAAAGACATGAAAATTAAAATTCTTTTGGAAAGAATATAATTAATATATG
*
33230513 AATTTGATTCAT
127 AATTTAATTCAT
*
33230525 ACAAAATATTAATTGTATATAATTTA
1 ACAAAATATTAATTGTATATATTTTA
33230551 CCGGGAAATT
Statistics
Matches: 152, Mismatches: 9, Indels: 8
0.90 0.05 0.05
Matches are distributed among these distances:
138 27 0.18
139 123 0.81
140 2 0.01
ACGTcount: A:0.47, C:0.06, G:0.07, T:0.40
Consensus pattern (138 bp):
ACAAAATATTAATTGTATATATTTTAGCAAATTTATTAATATAAAAAGTTATATTAATTAATTTC
GATCAAAATATAAAAGACATGAAAATTAAAATTCTTTTGGAAAGAATATAATTAATATATGAATT
TAATTCAT
Found at i:33230560 original size:82 final size:82
Alignment explanation
Indices: 33230474--33230635 Score: 288
Period size: 82 Copynumber: 2.0 Consensus size: 82
33230464 AAAGACATGA
33230474 AAATTAATATTCTTTTGGAAAGAATATAATTAATATATGAATTTGATTCATACAAAATATTAATT
1 AAATTAATATTCTTTTGGAAAGAATATAATTAATATATGAATTTGATTCATACAAAATATTAATT
33230539 GTATATAATTTACCGGG
66 GTATATAATTTACCGGG
* * *
33230556 AAATTAATATTCTTTTGGACAGAATATAATTAATATTTGAATTTGATTCATACAAAATATTGATT
1 AAATTAATATTCTTTTGGAAAGAATATAATTAATATATGAATTTGATTCATACAAAATATTAATT
*
33230621 GTATATATTTTACCG
66 GTATATAATTTACCG
33230636 AATGTATTAA
Statistics
Matches: 76, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
82 76 1.00
ACGTcount: A:0.41, C:0.07, G:0.10, T:0.42
Consensus pattern (82 bp):
AAATTAATATTCTTTTGGAAAGAATATAATTAATATATGAATTTGATTCATACAAAATATTAATT
GTATATAATTTACCGGG
Found at i:33233647 original size:23 final size:23
Alignment explanation
Indices: 33233617--33233674 Score: 107
Period size: 23 Copynumber: 2.5 Consensus size: 23
33233607 TATCACAAGT
33233617 GAATTAATTCAAAAATGGATTTA
1 GAATTAATTCAAAAATGGATTTA
*
33233640 GAATTAATTCACAAATGGATTTA
1 GAATTAATTCAAAAATGGATTTA
33233663 GAATTAATTCAA
1 GAATTAATTCAA
33233675 CTTGGGTCCA
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
23 33 1.00
ACGTcount: A:0.47, C:0.07, G:0.12, T:0.34
Consensus pattern (23 bp):
GAATTAATTCAAAAATGGATTTA
Found at i:33239899 original size:47 final size:47
Alignment explanation
Indices: 33239781--33239950 Score: 176
Period size: 47 Copynumber: 3.7 Consensus size: 47
33239771 GGATGATTGA
*
33239781 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTGA-GGATGCGAAT
* *
33239829 G--TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA-GATG-TAACT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTGAGGATGCGAA-T
* *
33239872 AGGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG-GAAC
1 --GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTGA-GGATGCGAAT
* *
33239921 GC--CTGAGCTCGTTGAGTTGAGTCCGAGTTC
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTC
33239951 GCTTATGGGC
Statistics
Matches: 105, Mismatches: 9, Indels: 19
0.79 0.07 0.14
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 29 0.28
46 29 0.28
47 31 0.30
48 3 0.03
50 6 0.06
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.29
Consensus pattern (47 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTGAGGATGCGAAT
Found at i:33246950 original size:46 final size:46
Alignment explanation
Indices: 33246900--33247075 Score: 207
Period size: 46 Copynumber: 3.8 Consensus size: 46
33246890 TGATTGAGCA
*
33246900 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
* * * *
33246946 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--ATG
*
33246991 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
* *
33247039 -CCTGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCC-GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
33247076 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 11, Indels: 16
0.80 0.08 0.12
Matches are distributed among these distances:
43 5 0.05
45 6 0.05
46 61 0.55
47 29 0.26
48 4 0.04
50 6 0.05
ACGTcount: A:0.21, C:0.20, G:0.29, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
Found at i:33247056 original size:93 final size:93
Alignment explanation
Indices: 33246897--33247068 Score: 301
Period size: 93 Copynumber: 1.8 Consensus size: 93
33246887 GGATGATTGA
* *
33246897 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGTCCGAACTCGTTGAGT
33246962 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
33246990 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG-CCTGAGCTCGTTGAG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGTCC-GAACTCGTTGAG
33247054 TTGAGTCCGAGTTCG
65 TTGAGTCCGAGTTCG
33247069 CTTATGGGCG
Statistics
Matches: 75, Mismatches: 3, Indels: 2
0.94 0.04 0.03
Matches are distributed among these distances:
92 2 0.03
93 73 0.97
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGTCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:33249603 original size:25 final size:25
Alignment explanation
Indices: 33249570--33249633 Score: 67
Period size: 25 Copynumber: 2.6 Consensus size: 25
33249560 TCAAGCACAG
* **
33249570 TAACAGGAAGCTCATGTGAGCCAT-T
1 TAACGGGAAGCTCATCCGAG-CATAT
* *
33249595 TAACGGGAAGCTTATCCGAGCTTAT
1 TAACGGGAAGCTCATCCGAGCATAT
33249620 TAACGGGAAGCTCA
1 TAACGGGAAGCTCA
33249634 CAAAGAGCCT
Statistics
Matches: 32, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
24 2 0.06
25 30 0.94
ACGTcount: A:0.31, C:0.20, G:0.25, T:0.23
Consensus pattern (25 bp):
TAACGGGAAGCTCATCCGAGCATAT
Found at i:33265864 original size:19 final size:19
Alignment explanation
Indices: 33265840--33265878 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
33265830 ATACCCCCAA
33265840 CACATGAAGAACCAAGGAC
1 CACATGAAGAACCAAGGAC
33265859 CACATGAAGAACCAAGGAC
1 CACATGAAGAACCAAGGAC
33265878 C
1 C
33265879 TCATTTTCTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.46, C:0.28, G:0.21, T:0.05
Consensus pattern (19 bp):
CACATGAAGAACCAAGGAC
Found at i:33270691 original size:14 final size:14
Alignment explanation
Indices: 33270672--33270698 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
33270662 TTAAGTATTA
33270672 TATCACTTAAATTT
1 TATCACTTAAATTT
33270686 TATCACTTAAATT
1 TATCACTTAAATT
33270699 CAGTACTTAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.37, C:0.15, G:0.00, T:0.48
Consensus pattern (14 bp):
TATCACTTAAATTT
Found at i:33273396 original size:23 final size:22
Alignment explanation
Indices: 33273315--33273399 Score: 95
Period size: 21 Copynumber: 4.0 Consensus size: 22
33273305 CCTGATCAGT
33273315 ATACGACACAT-AAGTGCCTGA
1 ATACGACACATGAAGTGCCTGA
*
33273336 A-ACGACACATGAGGTGCCTG-
1 ATACGACACATGAAGTGCCTGA
* * *
33273356 ATATGACACACGAGGTGCCTGAA
1 ATACGACACATGAAGTGCCTG-A
*
33273379 ATACGACACATAAAGTGCCTG
1 ATACGACACATGAAGTGCCTG
33273400 CTGGGCAAAG
Statistics
Matches: 53, Mismatches: 7, Indels: 6
0.80 0.11 0.09
Matches are distributed among these distances:
20 10 0.19
21 26 0.49
23 17 0.32
ACGTcount: A:0.35, C:0.24, G:0.24, T:0.18
Consensus pattern (22 bp):
ATACGACACATGAAGTGCCTGA
Found at i:33280548 original size:155 final size:155
Alignment explanation
Indices: 33280275--33280578 Score: 536
Period size: 155 Copynumber: 2.0 Consensus size: 155
33280265 TACAGATGGC
* *
33280275 ACCTTACGAGGCCCTGTATGGTCGTAAGTGTCGCACTCCCTTGTGTTAGACTGAGTTGGGTGAGC
1 ACCTTACGAGGCCCTGTATGGTCGTAAATGTCGCACTCCCTTGTGCTAGACTGAGTTGGGTGAGC
* *
33280340 AACGTGTTCTGGGTTCGGAGTTGGTATCGGAGACTAAGGATAAAGTCTGCTTGATTCGAGATCAA
66 AACGTGTTCTGGGTTCAGAGTTGGTATCGGAGACTAAGGATAAAGCCTGCTTGATTCGAGATCAA
33280405 TTGAAAGCTGCTTCTGACAGATAAA
131 TTGAAAGCTGCTTCTGACAGATAAA
*
33280430 ACCTTACGAGGCCCTGTATGGTCGTAAATGTCGCACTCTCTTGTGCTAGACTGAGTTGGGTGAGC
1 ACCTTACGAGGCCCTGTATGGTCGTAAATGTCGCACTCCCTTGTGCTAGACTGAGTTGGGTGAGC
* * *
33280495 GACGTGTTCTGGGTTTAGAGTTGGTATCGGAGACTGAGGATAAAGCCTGCTTGATTCGAGATCAA
66 AACGTGTTCTGGGTTCAGAGTTGGTATCGGAGACTAAGGATAAAGCCTGCTTGATTCGAGATCAA
33280560 TTGAAAGCTGCTTCTGACA
131 TTGAAAGCTGCTTCTGACA
33280579 AATAGAAGTC
Statistics
Matches: 141, Mismatches: 8, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
155 141 1.00
ACGTcount: A:0.23, C:0.18, G:0.29, T:0.29
Consensus pattern (155 bp):
ACCTTACGAGGCCCTGTATGGTCGTAAATGTCGCACTCCCTTGTGCTAGACTGAGTTGGGTGAGC
AACGTGTTCTGGGTTCAGAGTTGGTATCGGAGACTAAGGATAAAGCCTGCTTGATTCGAGATCAA
TTGAAAGCTGCTTCTGACAGATAAA
Found at i:33284571 original size:14 final size:15
Alignment explanation
Indices: 33284547--33284575 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
33284537 GAATGGCTTC
33284547 TGCTATTCTTTCTTT
1 TGCTATTCTTTCTTT
33284562 TGCT-TTCTTTCTTT
1 TGCTATTCTTTCTTT
33284576 ATTTCATTTC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 10 0.71
15 4 0.29
ACGTcount: A:0.03, C:0.21, G:0.07, T:0.69
Consensus pattern (15 bp):
TGCTATTCTTTCTTT
Found at i:33286683 original size:32 final size:32
Alignment explanation
Indices: 33286643--33286706 Score: 119
Period size: 32 Copynumber: 2.0 Consensus size: 32
33286633 TATTTCTTAG
33286643 TTAGTTGATATTATTATTGCAACACCCTTAAC
1 TTAGTTGATATTATTATTGCAACACCCTTAAC
*
33286675 TTAGTTGATATTATTATTGTAACACCCTTAAC
1 TTAGTTGATATTATTATTGCAACACCCTTAAC
33286707 CCGTCTCCAT
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 31 1.00
ACGTcount: A:0.31, C:0.17, G:0.09, T:0.42
Consensus pattern (32 bp):
TTAGTTGATATTATTATTGCAACACCCTTAAC
Found at i:33289231 original size:31 final size:31
Alignment explanation
Indices: 33289193--33289256 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
33289183 CCTTTTCATA
*
33289193 TTTCATATTTCATAACACTGGGCCGAAGCCT
1 TTTCATATTTCATAACACTAGGCCGAAGCCT
**
33289224 TTTCATATTTCATATTACTAGGCCGAAGCCT
1 TTTCATATTTCATAACACTAGGCCGAAGCCT
33289255 TT
1 TT
33289257 ACTGTAAACG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.25, C:0.23, G:0.14, T:0.38
Consensus pattern (31 bp):
TTTCATATTTCATAACACTAGGCCGAAGCCT
Found at i:33289492 original size:25 final size:23
Alignment explanation
Indices: 33289449--33289665 Score: 256
Period size: 25 Copynumber: 9.0 Consensus size: 23
33289439 TGCTTTATCA
*
33289449 TATAACTGGAGGCCT-AGCCTCTTT
1 TATAACTGG-GGCATAAGCC-CTTT
*
33289473 TAGTAACTGGGGCAAAAGCCCTTTT
1 TA-TAACTGGGGCATAAGCCC-TTT
33289498 TATAACTGGGGCATAAGCCCTTT
1 TATAACTGGGGCATAAGCCCTTT
* *
33289521 ATCGTAACTAGGGCATAAGCCCTTCAT
1 -T-ATAACTGGGGCATAAGCCCTT--T
*
33289548 CATAACTGGGGCATAAGCCCTTT
1 TATAACTGGGGCATAAGCCCTTT
33289571 ATCATAACTGGGGCATAAGCCCTTT
1 -T-ATAACTGGGGCATAAGCCCTTT
* *
33289596 AATAACTGGGGCATAAGCCCTTC
1 TATAACTGGGGCATAAGCCCTTT
*
33289619 AATAACTGGGGCATAAGCCCTTT
1 TATAACTGGGGCATAAGCCCTTT
*
33289642 AATAACTGGGGCATAAGCCCTTT
1 TATAACTGGGGCATAAGCCCTTT
33289665 T
1 T
33289666 GCACTTCCTC
Statistics
Matches: 171, Mismatches: 13, Indels: 19
0.84 0.06 0.09
Matches are distributed among these distances:
23 70 0.41
24 24 0.14
25 76 0.44
27 1 0.01
ACGTcount: A:0.28, C:0.24, G:0.21, T:0.28
Consensus pattern (23 bp):
TATAACTGGGGCATAAGCCCTTT
Found at i:33289567 original size:50 final size:48
Alignment explanation
Indices: 33289476--33289664 Score: 283
Period size: 50 Copynumber: 3.9 Consensus size: 48
33289466 CCTCTTTTAG
* * *
33289476 TAACTGGGGCAAAAGCCCTTTTTATAACTGGGGCATAAGCCCTTTATCG
1 TAACTGGGGCATAAGCCC-TTTAATAACTGGGGCATAAGCCCTTTATCA
* *
33289525 TAACTAGGGCATAAGCCCTTCATCATAACTGGGGCATAAGCCCTTTATCA
1 TAACTGGGGCATAAGCCCTT--TAATAACTGGGGCATAAGCCCTTTATCA
*
33289575 TAACTGGGGCATAAGCCCTTTAATAACTGGGGCATAAGCCCTTCA--A
1 TAACTGGGGCATAAGCCCTTTAATAACTGGGGCATAAGCCCTTTATCA
33289621 TAACTGGGGCATAAGCCCTTTAATAACTGGGGCATAAGCCCTTT
1 TAACTGGGGCATAAGCCCTTTAATAACTGGGGCATAAGCCCTTT
33289665 TGCACTTCCT
Statistics
Matches: 130, Mismatches: 8, Indels: 7
0.90 0.06 0.05
Matches are distributed among these distances:
46 44 0.34
48 25 0.19
49 16 0.12
50 45 0.35
ACGTcount: A:0.29, C:0.24, G:0.21, T:0.26
Consensus pattern (48 bp):
TAACTGGGGCATAAGCCCTTTAATAACTGGGGCATAAGCCCTTTATCA
Found at i:33289604 original size:23 final size:23
Alignment explanation
Indices: 33289471--33289664 Score: 262
Period size: 23 Copynumber: 8.1 Consensus size: 23
33289461 CCTAGCCTCT
* *
33289471 TTTAGTAACTGGGGCAAAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
*
33289494 TTTTTATAACTGGGGCATAAGCCC
1 -TTTAATAACTGGGGCATAAGCCC
* *
33289518 TTTATCGTAACTAGGGCATAAGCCC
1 TTTA--ATAACTGGGGCATAAGCCC
*
33289543 TTCATCATAACTGGGGCATAAGCCC
1 TT--TAATAACTGGGGCATAAGCCC
33289568 TTTATCATAACTGGGGCATAAGCCC
1 TTTA--ATAACTGGGGCATAAGCCC
33289593 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
*
33289616 TTCAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
33289639 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
33289662 TTT
1 TTT
33289665 TGCACTTCCT
Statistics
Matches: 152, Mismatches: 12, Indels: 13
0.86 0.07 0.07
Matches are distributed among these distances:
23 70 0.46
24 20 0.13
25 61 0.40
27 1 0.01
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.27
Consensus pattern (23 bp):
TTTAATAACTGGGGCATAAGCCC
Found at i:33289737 original size:9 final size:9
Alignment explanation
Indices: 33289723--33289779 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
33289713 ATCTCATGTG
33289723 CATATCATA
1 CATATCATA
*
33289732 CATATCATGTG
1 CATATCA--TA
33289743 CATATCATA
1 CATATCATA
* *
33289752 CATGTCATGTG
1 CATATCA--TA
33289763 CATATCATA
1 CATATCATA
33289772 CATATCAT
1 CATATCAT
33289780 GTTTATCAAA
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.21, G:0.09, T:0.35
Consensus pattern (9 bp):
CATATCATA
Found at i:33289739 original size:20 final size:20
Alignment explanation
Indices: 33289711--33289781 Score: 124
Period size: 20 Copynumber: 3.5 Consensus size: 20
33289701 GCATTTATGA
*
33289711 ACATCTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
33289731 ACATATCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
*
33289751 ACATGTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
33289771 ACATATCATGT
1 ACATATCATGT
33289782 TTATCAAAAT
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 48 1.00
ACGTcount: A:0.32, C:0.21, G:0.11, T:0.35
Consensus pattern (20 bp):
ACATATCATGTGCATATCAT
Done.