Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A06
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 115140250
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2234201 characters in sequence are not A, C, G, or T
File 105 of 345
Found at i:34732984 original size:7 final size:7
Alignment explanation
Indices: 34732960--34732999 Score: 55
Period size: 7 Copynumber: 5.9 Consensus size: 7
34732950 CCTGCCCTTT
34732960 GCTATTG
1 GCTATTG
*
34732967 GC-CTTG
1 GCTATTG
*
34732973 GCTATGG
1 GCTATTG
34732980 GCTATTG
1 GCTATTG
34732987 GCTATTG
1 GCTATTG
34732994 GCTATT
1 GCTATT
34733000 CTCTACCCTT
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
6 5 0.18
7 23 0.82
ACGTcount: A:0.12, C:0.17, G:0.30, T:0.40
Consensus pattern (7 bp):
GCTATTG
Found at i:34736711 original size:38 final size:37
Alignment explanation
Indices: 34736594--34736722 Score: 120
Period size: 35 Copynumber: 3.4 Consensus size: 37
34736584 GATCCGATTG
*
34736594 AAACACGAGAATTTCTTGTTTTGAAAACACGAGAATTTTA
1 AAACACGAG-ATTT-TT-TTTTGAAAACACGAAAATTTTA
* ** * *
34736634 AGACATAATATTTTTTTTT-AAAAC-C-AAAATTTATG
1 AAACACGAGATTTTTTTTTGAAAACACGAAAATTT-TA
34736669 AAACACGAGATTTTTTTTTGAAAACACGAAAATTTTCA
1 AAACACGAGATTTTTTTTTGAAAACACGAAAATTTT-A
*
34736707 AAACACCGAAATTTTT
1 AAACA-CGAGATTTTT
34736723 GAAAACAGAG
Statistics
Matches: 71, Mismatches: 12, Indels: 13
0.74 0.12 0.14
Matches are distributed among these distances:
34 6 0.08
35 17 0.24
36 10 0.14
37 6 0.08
38 14 0.20
39 13 0.18
40 5 0.07
ACGTcount: A:0.42, C:0.12, G:0.10, T:0.36
Consensus pattern (37 bp):
AAACACGAGATTTTTTTTTGAAAACACGAAAATTTTA
Found at i:34736716 original size:18 final size:17
Alignment explanation
Indices: 34736684--34736798 Score: 110
Period size: 17 Copynumber: 6.6 Consensus size: 17
34736674 CGAGATTTTT
34736684 TTTTGAAAACACGAAAA
1 TTTTGAAAACACGAAAA
* *
34736701 TTTTCAAAACACCGAAAT
1 TTTTGAAAACA-CGAAAA
**
34736719 TTTTGAAAACA-GAGGATT
1 TTTTGAAAACACGA--AAA
*
34736737 TTTTG-AAATACGAAAAA
1 TTTTGAAAACACG-AAAA
34736754 TTTTGAAAACACGAAAA
1 TTTTGAAAACACGAAAA
*
34736771 TTTTTG-AAACACGGAAA
1 -TTTTGAAAACACGAAAA
34736788 TTTTGAAAACA
1 TTTTGAAAACA
34736799 TTTTTGAAAC
Statistics
Matches: 81, Mismatches: 9, Indels: 16
0.76 0.08 0.15
Matches are distributed among these distances:
16 7 0.09
17 39 0.48
18 34 0.42
19 1 0.01
ACGTcount: A:0.47, C:0.11, G:0.13, T:0.29
Consensus pattern (17 bp):
TTTTGAAAACACGAAAA
Found at i:34736729 original size:35 final size:35
Alignment explanation
Indices: 34736683--34736798 Score: 130
Period size: 35 Copynumber: 3.3 Consensus size: 35
34736673 ACGAGATTTT
**
34736683 TTTTTGAAAACACGAAAATTTTCAAAACACCGAAA
1 TTTTTGAAAACACGAAAATTTTTGAAACACCGAAA
* * *
34736718 TTTTTGAAAACA-GAGGATTTTTTGAAATA-CGAAAA
1 TTTTTGAAAACACGA-AAATTTTTGAAACACCG-AAA
* *
34736753 ATTTTGAAAACACGAAAATTTTTGAAACACGGAAA
1 TTTTTGAAAACACGAAAATTTTTGAAACACCGAAA
34736788 -TTTTGAAAACA
1 TTTTTGAAAACA
34736799 TTTTTGAAAC
Statistics
Matches: 67, Mismatches: 10, Indels: 9
0.78 0.12 0.10
Matches are distributed among these distances:
34 15 0.22
35 49 0.73
36 3 0.04
ACGTcount: A:0.47, C:0.11, G:0.13, T:0.29
Consensus pattern (35 bp):
TTTTTGAAAACACGAAAATTTTTGAAACACCGAAA
Found at i:34736820 original size:18 final size:17
Alignment explanation
Indices: 34736683--34736844 Score: 88
Period size: 17 Copynumber: 9.5 Consensus size: 17
34736673 ACGAGATTTT
*
34736683 TTTTTGAAAACACGAAAA
1 TTTTTG-AAACACAAAAA
** **
34736701 TTTTCAAAACACCGAAA
1 TTTTTGAAACACAAAAA
* *
34736718 TTTTTGAAA-ACAGAGGAT
1 TTTTTGAAACACA-A-AAA
*
34736736 TTTTTGAAATACGAAAAA
1 TTTTTGAAACAC-AAAAA
*
34736754 -TTTTGAAAACACGAAAA
1 TTTTTG-AAACACAAAAA
**
34736771 TTTTTGAAACACGGAAA
1 TTTTTGAAACACAAAAA
34736788 -TTTTGAAA-AC----A
1 TTTTTGAAACACAAAAA
34736799 TTTTTGAAACACAAAAA
1 TTTTTGAAACACAAAAA
34736816 TTTTTAGAAGACACTAAAAA
1 TTTTT-GAA-ACAC-AAAAA
*
34736836 TTTTGGAAA
1 TTTTTGAAA
34736845 ATGGATTTTT
Statistics
Matches: 113, Mismatches: 16, Indels: 30
0.71 0.10 0.19
Matches are distributed among these distances:
11 1 0.01
12 8 0.07
13 2 0.02
15 2 0.02
16 10 0.09
17 41 0.36
18 29 0.26
19 10 0.09
20 10 0.09
ACGTcount: A:0.47, C:0.10, G:0.12, T:0.30
Consensus pattern (17 bp):
TTTTTGAAACACAAAAA
Found at i:34736829 original size:19 final size:18
Alignment explanation
Indices: 34736793--34736844 Score: 61
Period size: 20 Copynumber: 2.8 Consensus size: 18
34736783 GGAAATTTTG
34736793 AAAACATTTTTGAAACAC-
1 AAAA-ATTTTTGAAACACT
34736811 AAAAATTTTTAGAAGACACT
1 AAAAATTTTT-GAA-ACACT
*
34736831 AAAAATTTTGGAAA
1 AAAAATTTTTGAAA
34736845 ATGGATTTTT
Statistics
Matches: 30, Mismatches: 1, Indels: 6
0.81 0.03 0.16
Matches are distributed among these distances:
17 6 0.20
18 8 0.27
19 7 0.23
20 9 0.30
ACGTcount: A:0.52, C:0.10, G:0.10, T:0.29
Consensus pattern (18 bp):
AAAAATTTTTGAAACACT
Found at i:34737055 original size:20 final size:19
Alignment explanation
Indices: 34737017--34737063 Score: 53
Period size: 20 Copynumber: 2.5 Consensus size: 19
34737007 GAATATATTT
34737017 TTTTTGAAACACGAGAAAAA
1 TTTTTGAAACACG-GAAAAA
*
34737037 TTTTTGAAGGCAC-GAAAAA
1 TTTTTGAA-ACACGGAAAAA
34737056 -TTTTGAAA
1 TTTTTGAAA
34737064 AATAGAATTT
Statistics
Matches: 24, Mismatches: 2, Indels: 5
0.77 0.06 0.16
Matches are distributed among these distances:
18 7 0.29
19 6 0.25
20 8 0.33
21 3 0.12
ACGTcount: A:0.45, C:0.09, G:0.17, T:0.30
Consensus pattern (19 bp):
TTTTTGAAACACGGAAAAA
Found at i:34737434 original size:7 final size:7
Alignment explanation
Indices: 34737422--34737505 Score: 98
Period size: 7 Copynumber: 11.9 Consensus size: 7
34737412 GAAACTCTTT
34737422 TTTTTTC
1 TTTTTTC
34737429 TTTTTT-
1 TTTTTTC
*
34737435 TTTCTTC
1 TTTTTTC
*
34737442 TTTTTCC
1 TTTTTTC
34737449 TTTTTTC
1 TTTTTTC
*
34737456 TCTTTTC
1 TTTTTTC
34737463 TTTTTTC
1 TTTTTTC
*
34737470 TTCTTTC
1 TTTTTTC
34737477 TTTTTTTC
1 -TTTTTTC
34737485 TTTTTTC
1 TTTTTTC
*
34737492 TTTCTCTC
1 TTT-TTTC
34737500 TTTTTT
1 TTTTTT
34737506 TCCTCGGCCT
Statistics
Matches: 64, Mismatches: 10, Indels: 6
0.80 0.12 0.08
Matches are distributed among these distances:
6 5 0.08
7 47 0.73
8 12 0.19
ACGTcount: A:0.00, C:0.19, G:0.00, T:0.81
Consensus pattern (7 bp):
TTTTTTC
Found at i:34737638 original size:23 final size:23
Alignment explanation
Indices: 34737595--34737638 Score: 54
Period size: 23 Copynumber: 1.9 Consensus size: 23
34737585 GGCCTGCTTC
*
34737595 TTTTTTCTGGGCTGTTTTTTTCT
1 TTTTTTCTGGCCTGTTTTTTTCT
*
34737618 TTTTTTTTGGCCT-TTTCTTTT
1 TTTTTTCTGGCCTGTTT-TTTT
34737639 GGGCTGTTTT
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
22 3 0.17
23 15 0.83
ACGTcount: A:0.00, C:0.14, G:0.14, T:0.73
Consensus pattern (23 bp):
TTTTTTCTGGCCTGTTTTTTTCT
Found at i:34737650 original size:17 final size:16
Alignment explanation
Indices: 34737630--34737701 Score: 67
Period size: 16 Copynumber: 4.4 Consensus size: 16
34737620 TTTTTTGGCC
*
34737630 TTTTCTTTTGGGCTGT
1 TTTTTTTTTGGGCTGT
*
34737646 TTTTTTTTT-TGCT-T
1 TTTTTTTTTGGGCTGT
34737660 TGGTTTTTTTTGGGCTGAT
1 T--TTTTTTTTGGGCTG-T
* *
34737679 TTTTTTTTTGTGTTGT
1 TTTTTTTTTGGGCTGT
34737695 TTTTTTT
1 TTTTTTT
34737702 AATTAATTTT
Statistics
Matches: 46, Mismatches: 5, Indels: 10
0.75 0.08 0.16
Matches are distributed among these distances:
14 2 0.04
15 3 0.07
16 24 0.52
17 15 0.33
19 2 0.04
ACGTcount: A:0.01, C:0.06, G:0.19, T:0.74
Consensus pattern (16 bp):
TTTTTTTTTGGGCTGT
Found at i:34737671 original size:32 final size:31
Alignment explanation
Indices: 34737595--34737701 Score: 117
Period size: 32 Copynumber: 3.3 Consensus size: 31
34737585 GGCCTGCTTC
* *
34737595 TTTTTTCTGGGCTGTTTTTTTCTTTTTTTTTGG
1 TTTTTTTTGGGCTG-TTTTTT-TTTTTGTTTGG
34737628 CCTTTTCTTTTGGGCTGTTTTTTTTTTTGCTTTGG
1 --TTTT-TTTTGGGCTGTTTTTTTTTTTG-TTTGG
*
34737663 TTTTTTTTGGGCTGATTTTTTTTTTGTGTT-G
1 TTTTTTTTGGGCTGTTTTTTTTTTTGT-TTGG
34737694 TTTTTTTT
1 TTTTTTTT
34737702 AATTAATTTT
Statistics
Matches: 66, Mismatches: 3, Indels: 10
0.84 0.04 0.13
Matches are distributed among these distances:
31 10 0.15
32 23 0.35
33 4 0.06
34 5 0.08
35 15 0.23
36 9 0.14
ACGTcount: A:0.01, C:0.08, G:0.19, T:0.72
Consensus pattern (31 bp):
TTTTTTTTGGGCTGTTTTTTTTTTTGTTTGG
Found at i:34737685 original size:36 final size:34
Alignment explanation
Indices: 34737594--34737687 Score: 111
Period size: 35 Copynumber: 2.8 Consensus size: 34
34737584 TGGCCTGCTT
* *
34737594 CTTTTTTCTGGGCTGTTTTTTTCTTTTTTTTTGG
1 CTTTTTTTTGGGCTGTTTTTTTTTTTTTTTTTGG
**
34737628 CCTTTTCTTTTGGGCTG-TTTTTTTTTTTGCTTTGG
1 -CTTTT-TTTTGGGCTGTTTTTTTTTTTTTTTTTGG
*
34737663 -TTTTTTTTGGGCTGATTTTTTTTTT
1 CTTTTTTTTGGGCTGTTTTTTTTTTT
34737688 GTGTTGTTTT
Statistics
Matches: 53, Mismatches: 4, Indels: 6
0.84 0.06 0.10
Matches are distributed among these distances:
32 10 0.19
33 14 0.26
35 20 0.38
36 9 0.17
ACGTcount: A:0.01, C:0.11, G:0.18, T:0.70
Consensus pattern (34 bp):
CTTTTTTTTGGGCTGTTTTTTTTTTTTTTTTTGG
Found at i:34738228 original size:29 final size:28
Alignment explanation
Indices: 34738195--34738293 Score: 94
Period size: 29 Copynumber: 3.4 Consensus size: 28
34738185 TGTAATTTTT
*
34738195 AGAAAATTTAGGATTAAAATGAAATTTAA
1 AGAAAGTTTAGG-TTAAAATGAAATTTAA
* *
34738224 TGAAAGTTTAGGGGTCT-AAGTGAAATTTAA
1 AGAAAGTTTA--GGT-TAAAATGAAATTTAA
*
34738254 AGAAAGTTTAAGGTCAAAATGAAATTT-A
1 AGAAAGTTT-AGGTTAAAATGAAATTTAA
*
34738282 GGAAAGTTTAGG
1 AGAAAGTTTAGG
34738294 GGTCAAAATG
Statistics
Matches: 58, Mismatches: 7, Indels: 12
0.75 0.09 0.16
Matches are distributed among these distances:
27 3 0.05
28 9 0.16
29 21 0.36
30 21 0.36
31 4 0.07
ACGTcount: A:0.45, C:0.02, G:0.22, T:0.30
Consensus pattern (28 bp):
AGAAAGTTTAGGTTAAAATGAAATTTAA
Found at i:34738297 original size:29 final size:30
Alignment explanation
Indices: 34738210--34738309 Score: 132
Period size: 29 Copynumber: 3.4 Consensus size: 30
34738200 ATTTAGGATT
*
34738210 AAAATGAAATTTAATGAAAGTTTAGGGGTC
1 AAAATGAAATTTAAAGAAAGTTTAGGGGTC
* * *
34738240 TAAGTGAAATTTAAAGAAAGTTTA-AGGTC
1 AAAATGAAATTTAAAGAAAGTTTAGGGGTC
*
34738269 AAAATGAAATTT-AGGAAAGTTTAGGGGTC
1 AAAATGAAATTTAAAGAAAGTTTAGGGGTC
*
34738298 AAAATGCAATTT
1 AAAATGAAATTT
34738310 TTTTTTTAAA
Statistics
Matches: 60, Mismatches: 9, Indels: 3
0.83 0.12 0.04
Matches are distributed among these distances:
28 10 0.17
29 29 0.48
30 21 0.35
ACGTcount: A:0.44, C:0.04, G:0.22, T:0.30
Consensus pattern (30 bp):
AAAATGAAATTTAAAGAAAGTTTAGGGGTC
Found at i:34738325 original size:12 final size:13
Alignment explanation
Indices: 34738305--34738336 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
34738295 GTCAAAATGC
*
34738305 AATTTTTTTTTTA
1 AATTTTTTTTTGA
34738318 AATTTTTTTTTGA
1 AATTTTTTTTTGA
34738331 AATTTT
1 AATTTT
34738337 GAAAATTAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.25, C:0.00, G:0.03, T:0.72
Consensus pattern (13 bp):
AATTTTTTTTTGA
Found at i:34738765 original size:101 final size:105
Alignment explanation
Indices: 34738575--34738781 Score: 284
Period size: 101 Copynumber: 2.0 Consensus size: 105
34738565 CACGTGAGCC
* *
34738575 AAGGCTCAACTAACTTCTCGAATATGAGTTGATTTTGAAAACAGGAATTTGCAAAAGGCTCAACT
1 AAGGCTCAACTAACCTCTCGAATATGAGTTGATTTTGAAAACAAGAATTT-CAAAAGGCTCAACT
*
34738640 CCACATCTGCGCAATATGAGTTGATTTTTGAAAAATAGAAA
65 CCACATCTGCGCAATATGAGTTGATTTTTGAAAAACAGAAA
* *
34738681 AAGGCTCAACTCACCTCTCGCAATATGAGTTGGTTTTTGAAAA-ATAGAA-TT-AAAAGGCTCAA
1 AAGGCTCAACTAACCTCTCG-AATATGAGTT-GATTTTGAAAACA-AGAATTTCAAAAGGCTCAA
34738743 CT-CAC-T-T-CGCAATATGAGTTGATTTTTGAAAAACAGAAA
63 CTCCACATCTGCGCAATATGAGTTGATTTTTGAAAAACAGAAA
34738782 TTGAAAAGGT
Statistics
Matches: 93, Mismatches: 5, Indels: 11
0.85 0.05 0.10
Matches are distributed among these distances:
101 31 0.33
102 1 0.01
103 1 0.01
104 3 0.03
105 13 0.14
106 18 0.19
107 13 0.14
108 13 0.14
ACGTcount: A:0.38, C:0.16, G:0.17, T:0.29
Consensus pattern (105 bp):
AAGGCTCAACTAACCTCTCGAATATGAGTTGATTTTGAAAACAAGAATTTCAAAAGGCTCAACTC
CACATCTGCGCAATATGAGTTGATTTTTGAAAAACAGAAA
Found at i:34738769 original size:51 final size:53
Alignment explanation
Indices: 34738575--34738790 Score: 252
Period size: 51 Copynumber: 4.1 Consensus size: 53
34738565 CACGTGAGCC
* *
34738575 AAGGCTCAACTAACTTCTCG-AATATGAGTTGA-TTTTGAAAACA-GGAATTTGCAA
1 AAGGCTCAACTCAC-TCTCGCAATATGAGTTGATTTTTGAAAA-ATAGAA-TTG-AA
34738629 AAGGCTCAACTCCACATCTGCGCAATATGAGTTGATTTTTGAAAAATAG-A---AA
1 AAGGCTCAACT-CAC-TCT-CGCAATATGAGTTGATTTTTGAAAAATAGAATTGAA
*
34738681 AAGGCTCAACTCACCTCTCGCAATATGAGTTGGTTTTTGAAAAATAGAATT-AA
1 AAGGCTCAACTCA-CTCTCGCAATATGAGTTGATTTTTGAAAAATAGAATTGAA
*
34738734 AAGGCTCAACTCACT-TCGCAATATGAGTTGATTTTTGAAAAACAGAAATTGAA
1 AAGGCTCAACTCACTCTCGCAATATGAGTTGATTTTTGAAAAATAG-AATTGAA
34738787 AAGG
1 AAGG
34738791 TAGAAATTGA
Statistics
Matches: 145, Mismatches: 6, Indels: 23
0.83 0.03 0.13
Matches are distributed among these distances:
50 28 0.19
51 34 0.23
52 20 0.14
53 21 0.14
54 11 0.08
55 5 0.03
56 2 0.01
57 14 0.10
58 10 0.07
ACGTcount: A:0.38, C:0.16, G:0.18, T:0.28
Consensus pattern (53 bp):
AAGGCTCAACTCACTCTCGCAATATGAGTTGATTTTTGAAAAATAGAATTGAA
Found at i:34738883 original size:15 final size:15
Alignment explanation
Indices: 34738863--34738900 Score: 69
Period size: 14 Copynumber: 2.6 Consensus size: 15
34738853 GATTTTTTTT
34738863 TTAAAAACACAGAAA
1 TTAAAAACACAGAAA
34738878 TTAAAAA-ACAGAAA
1 TTAAAAACACAGAAA
34738892 TTAAAAACA
1 TTAAAAACA
34738901 GAATTTGAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
14 14 0.64
15 8 0.36
ACGTcount: A:0.68, C:0.11, G:0.05, T:0.16
Consensus pattern (15 bp):
TTAAAAACACAGAAA
Found at i:34738899 original size:13 final size:14
Alignment explanation
Indices: 34738863--34738903 Score: 66
Period size: 13 Copynumber: 2.9 Consensus size: 14
34738853 GATTTTTTTT
34738863 TTAAAAACACAGAAA
1 TTAAAAA-ACAGAAA
34738878 TTAAAAAACAGAAA
1 TTAAAAAACAGAAA
34738892 TT-AAAAACAGAA
1 TTAAAAAACAGAA
34738904 TTTGAAAAGA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
13 10 0.38
14 9 0.35
15 7 0.27
ACGTcount: A:0.68, C:0.10, G:0.07, T:0.15
Consensus pattern (14 bp):
TTAAAAAACAGAAA
Found at i:34739573 original size:189 final size:192
Alignment explanation
Indices: 34739104--34742223 Score: 3344
Period size: 189 Copynumber: 16.2 Consensus size: 192
34739094 ATGTGGAGCC
** *
34739104 GAGGCTCAACTCACCTCTTGCAATATGAGTTTGATTTTTGAAAAAC-AAAATTAAAAGGCTTAAC
1 GAGGCTCAACTCATTTCTCGCAATATGAG-TTGA-TTTTGAAAAACAAAAATTAAAAGGCTTAAC
*
34739168 TCACCTCTCGCAATATGAGTCAATTTAAAACAT-AA-TAAAAAATGACCTCGGCGTGCCCCGAGG
64 TCACCTCTCGCAATATGAGTCAATTTAAAACATAAACT-AAATAT-ACCTCGGCGTGCCCCGAGG
* **
34739231 CTCAACTCATTTCTTCGCAATATGAGTTGATTTTTTTTTAAAATTT-AAAATACCTCAACGTGTC
127 CTCAACTCACTTC-TCGCAATATGAGTTGATTTTTTTAAAAAATTTAAAAATACCTCAACGTGTC
34739295 TT
191 TT
*
34739297 GAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTGAAAAACAAAATTTAAAAGGCTTAACTC
1 GAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTGAAAAACAAAAATTAAAAGGCTTAACT-
*
34739362 CACCTCTCGCAATATGAGTCAATTTAAAACATAAACTAAATA-ACTTCGGCGTG-CCCGAGGCTC
65 CACCTCTCGCAATATGAGTCAATTTAAAACATAAACTAAATATACCTCGGCGTGCCCCGAGGCTC
*
34739425 AACTCACTT-TCGTAATATGAGTTGATTTTTTTAAAAAATTTAAAAATACCTCAACGTGTCTT
130 AACTCACTTCTCGCAATATGAGTTGATTTTTTTAAAAAATTTAAAAATACCTCAACGTGTCTT
*
34739487 GAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTAAAAAACAAAAATTAAAAGGCTTAACTC
1 GAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTGAAAAACAAAAATTAAAAGGCTTAACTC
*
34739552 ACCTCTCGCAATATGAGTCAATTTAAAACATAAACTAAA-ATATCCTCTGCGTGCCCCGAGGCTG
66 ACCTCTCGCAATATGAGTCAATTTAAAACATAAACTAAATATA-CCTCGGCGTGCCCCGAGGCT-
*
34739616 CAACTCACTTCTCGGCAATATGAGTTGA-TTTTTAAAAAAATTTAAAAATACCTCAACGTG-CTT
129 CAACTCACTTCTC-GCAATATGAGTTGATTTTTTTAAAAAATTTAAAAATACCTCAACGTGTC-T
34739679 T
192 T
34739680 GGAAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTGAAAAACAAAAAATTAAAGAGGCTT-
1 -G-AGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTGAAAAAC-AAAAATTAAA-AGGCTTA
* *
34739744 ACTCACTCTGCATACGC-ATATGAGTC-ATTTAAAAACATAAACTAAAAATACCTCTG-GTGCCC
62 ACTCAC-CT-C-T-CGCAATATGAGTCAATTT-AAAACATAAACTAAATATACCTCGGCGTGCCC
*
34739806 CGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTTTAAAAATATTTTAAAAAATA-GTCA
122 CGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTTTAAAAA-A-TTT-AAAAATACCTCA
34739870 ACGTGTCTTT
184 ACGTGTC-TT
*
34739880 GAGGCTAAGACTCATATTCTCGCAATATGAGTTGAATTTTGAAAAACAAAAATTAAAAGGCTTAA
1 GAGGCTCA-ACTCAT-TTCTCGCAATATGAGTTG-ATTTTGAAAAACAAAAATTAAAAGGCTT-A
* *
34739945 ACTCACGTCTCG-AATATGAGTC-ATTTAAAAAATAAACTAAA-ATACCTCGGC-TGCCCCCGAG
62 ACTCACCTCTCGCAATATGAGTCAATTTAAAACATAAACTAAATATACCTCGGCGTG-CCCCGAG
34740006 GCT--ACTCACTTCTCGCAATATGAGTTGA--TTTTTAAAAAATTT-AAAATA-CTCAACGTGTC
126 GCTCAACTCACTTCTCGCAATATGAGTTGATTTTTTTAAAAAATTTAAAAATACCTCAACGTGTC
34740065 TT
191 TT
34740067 GAGGCTCAACTCATTTCATCGCAATATGAGTTGATTTTGAAAAAC-AAAATTAAAAGGCTTAACT
1 GAGGCTCAACTCATTTC-TCGCAATATGAGTTGATTTTGAAAAACAAAAATTAAAAGGCTTAACT
* * *
34740131 CAACTCT-GCAATATGCGTC-ATTTAAAAACATAAACCAAA-ATGACCTCGGCGTG--CCGAGGC
65 CACCTCTCGCAATATGAGTCAATTT-AAAACATAAACTAAATAT-ACCTCGGCGTGCCCCGAGGC
**
34740191 TCAACTCACTTCTCGTCAATA-GAGTTG-TTTTTTTTTAAAATTTAAAAATACCTCAACGTGTCT
128 TCAACTCACTTCTCG-CAATATGAGTTGATTTTTTTAAAAAATTTAAAAATACCTCAACGTGTCT
34740254 T
192 T
34740255 GAGGCTCAACATCATTTTCCTCGCAATATGAGTTG-TTTTGAAAAACACAAAATTAAAAGGCTTA
1 GAGGCTCAAC-TCA-TTT-CTCGCAATATGAGTTGATTTTGAAAAACA-AAAATTAAAAGGCTTA
34740319 ACTCACCTCTCGCAATATGAGTC-ATTTAAAACATAAACTAAA-ATAACCGTCGGCGTG-CCCGA
62 ACTCACCTCTCGCAATATGAGTCAATTTAAAACATAAACTAAATAT-ACC-TCGGCGTGCCCCGA
*
34740381 GGCTACAACTCACTTCTCGGCAATATGAGTTGATTTTTTTTAACAAATTTAAAAATACCTCAACG
125 GGCT-CAACTCACTTCTC-GCAATATGAGTTGA-TTTTTTTAAAAAATTTAAAAATACCTCAACG
34740446 TGTCTT
187 TGTCTT
* *
34740452 GAGGCCTCAACTCATTTCTCGGCAATATGCGTTGATTTTTAAAAACAAAAACTT--AAGGACTT-
1 GAGG-CTCAACTCATTTCTC-GCAATATGAGTTGATTTTGAAAAACAAAAA-TTAAAAGG-CTTA
34740514 ACTGTCACCTCTCGCAATATGAGTC-ATTTAAAAGCATAAACTAAA-ATACCCGGTCGGCGTG-C
62 AC--TCACCTCTCGCAATATGAGTCAATTTAAAA-CATAAACTAAATATA-CC--TCGGCGTGCC
*
34740576 CCGAGTCCTC-ACTCACTTCTCG-AATATGAGTTGATTTTTTTAAAAAAATTTAAAAAATACCTC
121 CCGAG-GCTCAACTCACTTCTCGCAATATGAGTTGATTTTTTT-AAAAAATTT-AAAAATACCTC
34740639 -ACGTGTCTT
183 AACGTGTCTT
* *
34740648 GAGGCTCAACTCAACTTCTCGCAATA-GAGTTGATTTTGAAACA-AAAAATTAAAAGG-TTAACT
1 GAGGCTCAACTC-ATTTCTCGCAATATGAGTTGATTTTGAAAAACAAAAATTAAAAGGCTTAACT
* *
34740710 CACCTCTCGCAAATATAGGGTC-ATTTACAAA-AT-AACTAAA-ATA-CTCCGGTGGTG-CCCG-
65 CACCTCTCGC-AATAT-GAGTCAATTTA-AAACATAAACTAAATATACCT-CGG-CGTGCCCCGA
**
34740768 GGCTCAA-TCCACTTCTCGCAATATGAGTTGATTTTTTT--TTAATTTAAAAATACCTCAACGGT
125 GGCTCAACT-CACTTCTCGCAATATGAGTTGATTTTTTTAAAAAATTTAAAAATACCTCAAC-GT
34740830 GT-TT
188 GTCTT
34740834 GAGGCTCAACTCATTTCTCAGGCAATATGAGTTGATTTTGAAAAACAAAAATT-AAAGGCTT-AC
1 GAGGCTCAACTCATTTCTC--GCAATATGAGTTGATTTTGAAAAACAAAAATTAAAAGGCTTAAC
*
34740897 TCACCTC-CGC-ATAATGAGTCAATTTTAAAAGCATAAACTAAAAATACCTCGGCGTG--CCGA-
64 TCACCTCTCGCAAT-ATGAGTCAA-TTTAAAA-CATAAACTAAATATACCTCGGCGTGCCCCGAG
34740957 GCTCAACCTCACTTCTCGCAATATGAGTTGGA-TTTTTT-AAAAA-TT--AAATACCCTCAACGT
126 GCTCAA-CTCACTTCTCGCAATATGAGTT-GATTTTTTTAAAAAATTTAAAAATA-CCTCAACGT
34741017 GTCTT
188 GTCTT
* *
34741022 GAGGCATCAACTCATTTCATCGGCAATAAGA-TTGATTTTGAAAAAAAAAAATTAAAA-GCTTAA
1 GAGGC-TCAACTCATTTC-TC-GCAATATGAGTTGATTTTGAAAAACAAAAATTAAAAGGCTTAA
*
34741085 CTCACCTCTCGCAATATGAGTCAAATTTAAAAACATAAACTAAAAATACCTCGGCGTG-CCCGAA
63 CTCACCTCTCGCAATATGAGTC-AATTT-AAAACATAAACTAAATATACCTCGGCGTGCCCCG-A
*
34741149 GGCTCAACTCGACTTCTCGCAATATTGAGTTGATCTTTTTAAAAAATTTAAAATAGAGGTTTAAC
125 GGCTCAACTC-ACTTCTCGCAATA-TGAGTTGATTTTTTTAAAAAATTT-AAA-A-A----T-AC
* *
34741214 TAAAACTCTACGT-TTTT
180 -----CTCAACGTGTCTT
* * *
34741231 GAGGCTCACCTC-TTTCT-ACAAT-TGAGTTGATTTTGAAAAACACAAATTAAAAAGGCTTTAAC
1 GAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTGAAAAACAAAAATT-AAAAGGC-TTAAC
*
34741293 TCACCTCTGCGCAAATACTGAGTCAATTTAAAACATAAACTAAAAATA-CTC-GCGTG-CCCGAC
64 TCACCTCT-CGC-AATA-TGAGTCAATTTAAAACATAAACTAAATATACCTCGGCGTGCCCCGA-
***
34741355 GGCTGCTCAACTCACTTCTCGC-ATATGAGTTGATTTTTTTTTTTCGAAATTT--AAATACCTCA
125 -G--GCTCAACTCACTTCTCGCAATATGAGTTGA---TTTTTTTAAAAAATTTAAAAATACCTCA
34741417 ACGTGT-TT
184 ACGTGTCTT
* * *
34741425 GGAGGGCTC-A-TCACTT-TCGCCATTATGAGTTGAATTTTG-AAAACAAAAAATTAAAAGGATT
1 -GA-GGCTCAACTCATTTCTCG-CAATATGAGTTG-ATTTTGAAAAAC-AAAAATTAAAAGGCTT
*
34741486 AACTCA-CTCTACGCAATATGAGTCAATTTAAAACCCATAATC-AAA-ATACCTCGGCGTGCCCC
61 AACTCACCTCT-CGCAATATGAGTCAATTTAAAA--CATAAACTAAATATACCTCGGCGTGCCCC
***
34741548 GA-GCTCAACTCA-TTCTCGGCAATGATGAGTTGATTTTTTTTTTAAA-TTAAAATATA-CTCAA
123 GAGGCTCAACTCACTTCTC-GCAAT-ATGAGTTGATTTTTTTAAAAAATTTAAAA-ATACCTCAA
34741609 CGTGTCTT
185 CGTGTCTT
*
34741617 GA-GCTCACACTCATTTCTCGCAATATGAGTTGAATTTTAAAAAACAAAAATTAAAAGGCTTAAC
1 GAGGCTCA-ACTCATTTCTCGCAATATGAGTTG-ATTTTGAAAAACAAAAATTAAAAGGCTTAAC
34741681 TCACCTCTCGCAATA-G-GTC-ATTTAAAAC-TAAACTAAA-ATACCTCGGCGTGCCCCGAGG--
64 TCACCTCTCGCAATATGAGTCAATTTAAAACATAAACTAAATATACCTCGGCGTGCCCCGAGGCT
34741739 C-ACTCACTTCTCGCAATATGAGTTGA--TTTTTAAAATATATTTAAAAATAACCTCAACGTGTT
129 CAACTCACTTCTCGCAATATGAGTTGATTTTTTTAAAA-A-ATTTAAAAAT-ACCTCAACGTG-T
34741801 CTT
190 CTT
*
34741804 GAAGGCTCGAACTCATTTCTC-CAATAT--GTT-ATTTTGAAACAA-ACAAATTAAAAGGCTTAA
1 G-AGGCTC-AACTCATTTCTCGCAATATGAGTTGATTTTGAAA-AACAAAAATTAAAAGGCTTAA
* * *
34741864 CTCA-CTCTCGC-ATATGAGTCAATTT-AAATAT-AACTAAA-ATACC-CAGTTCGCGTCGGACT
63 CTCACCTCTCGCAATATGAGTCAATTTAAAACATAAACTAAATATACCTC-G---GCGT--GCCC
* * *
34741923 CGAGGCTCAACTCGCACTGTCTCGC-ATATGAGGTTTGATTTTTTTTTATAAATTAAAAAATACC
122 CGAGGCTCAACT--CACT-TCTCGCAATATGA-G-TTGA-TTTTTTTAAAAAATTTAAAAATACC
34741987 TC-ACGTGTCTT
181 TCAACGTGTCTT
34741998 GAGGCT--ACTGCAATTTTCTTCGGCAATATGAGTTTGATTTTGAAAAAC-AAAA-TAAAAGGCT
1 GAGGCTCAACT-C-A-TTTC-TC-GCAATATGAG-TTGATTTTGAAAAACAAAAATTAAAAGGCT
* *
34742059 TAA-TCACCTCTCCGGCAATCATG-GTCAATTT--AACATAAACTAAAAAGTACCTTGCGCGTGC
60 TAACTCACCTCT-C-GCAAT-ATGAGTCAATTTAAAACATAAACTAAATA-TACCTCG-GCGTGC
* * *
34742120 CCCAAGGCTCAACTCACTTCTCGCAATATGGGTTGA-TTTTTT-AAAAA-TTAAAAAT-CGTC-A
120 CCCGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTTTAAAAAATTTAAAAATACCTCAA
34742180 CGTGT-TT
185 CGTGTCTT
*
34742187 GAGGCTCAACTCATTTCTCGTAATATGAGGTT-ATTTT
1 GAGGCTCAACTCATTTCTCGCAATATGA-GTTGATTTT
34742224 CCTTGGAAAG
Statistics
Matches: 2580, Mismatches: 110, Indels: 482
0.81 0.03 0.15
Matches are distributed among these distances:
182 10 0.00
183 40 0.02
184 90 0.03
185 93 0.04
186 99 0.04
187 81 0.03
188 146 0.06
189 236 0.09
190 195 0.08
191 158 0.06
192 156 0.06
193 192 0.07
194 134 0.05
195 134 0.05
196 160 0.06
197 181 0.07
198 88 0.03
199 103 0.04
200 65 0.03
201 41 0.02
202 4 0.00
203 7 0.00
204 25 0.01
205 8 0.00
206 22 0.01
207 24 0.01
208 37 0.01
209 38 0.01
210 13 0.01
ACGTcount: A:0.35, C:0.20, G:0.14, T:0.31
Consensus pattern (192 bp):
GAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTGAAAAACAAAAATTAAAAGGCTTAACTC
ACCTCTCGCAATATGAGTCAATTTAAAACATAAACTAAATATACCTCGGCGTGCCCCGAGGCTCA
ACTCACTTCTCGCAATATGAGTTGATTTTTTTAAAAAATTTAAAAATACCTCAACGTGTCTT
Found at i:34739662 original size:71 final size:71
Alignment explanation
Indices: 34739540--34739724 Score: 173
Period size: 71 Copynumber: 2.6 Consensus size: 71
34739530 CAAAAATTAA
* * * * ** **
34739540 AAGGCTTAACTCACCTCTCGCAATATGAG-TCAATTT-AAAACATAAACT-AAAATATCCTCTGC
1 AAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTGAAAA-A-AATTTAAAAATA-CCTCAAC
34739602 GTGC-CCCG
63 GTGCTCCCG
*
34739610 -AGGCTGCAACTCACTTCTCGGCAATATGAGTTGATTTTTAAAAAAATTTAAAAATACCTCAACG
1 AAGGCT-CAACTCACTTCTC-GCAATATGAGTTGATTTTGAAAAAAATTTAAAAATACCTCAACG
***
34739674 TGCTTTGG
64 TGCTCCCG
*
34739682 AAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTGAAAAA
1 AAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTGAAAAA
34739725 CAAAAAATTA
Statistics
Matches: 95, Mismatches: 13, Indels: 13
0.79 0.11 0.11
Matches are distributed among these distances:
69 5 0.05
70 11 0.12
71 45 0.47
72 25 0.26
73 9 0.09
ACGTcount: A:0.34, C:0.21, G:0.15, T:0.30
Consensus pattern (71 bp):
AAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTGAAAAAAATTTAAAAATACCTCAACGTG
CTCCCG
Found at i:34741862 original size:184 final size:188
Alignment explanation
Indices: 34741255--34742212 Score: 550
Period size: 192 Copynumber: 5.0 Consensus size: 188
34741245 TCTACAATTG
*
34741255 AGTTGATTTTGAAA-AACACAAATTAAAAAGGCTTTAACTCACCTCTGCGCAAATACTGAGTCAA
1 AGTTAATTTTGAAACAA-ACAAATT-AAAAGGC-TTAACTCA-CTCT-CGC-AATA-TGAGTCAA
34741319 TTTAAAAC-ATAAACTAAAAATA-CTC-GCGTG-CCCGACGGCTGCTCAACTCACTTCTC-GC-A
59 TTTAAAACTAT-AACT-AAAATACCTCGGCGTGCCCCGA--GC-G--CAACTCA-TTCTCGGCAA
**** * * ** * *
34741378 T-ATGAGTTGATTTTTTTTTTTCGAAATTTAAATA-CCTCAACGTGT-TTGGAGGGCTCA-TCAC
116 TGATGAGTTGA-TTTTTAAAAT--AAATTAAAATATACTCAACGTGTCTT-GAGCTCACACTCAT
*
34741439 TT-TCGCCATTAT
177 TTCTCG-CAATAT
*
34741451 GAGTTGAATTTTGAAAACAAA-AAATTAAAAGGATTAACTCACTCTACGCAATATGAGTCAATTT
1 -AGTT-AATTTTG-AAACAAACAAATTAAAAGGCTTAACTCACTCT-CGCAATATGAGTCAATTT
* *
34741515 AAAACCCATAA-TCAAAATACCTCGGCGTGCCCCGAGCTCAACTCATTCTCGGCAATGATGAGTT
62 AAAA-CTATAACT-AAAATACCTCGGCGTGCCCCGAGCGCAACTCATTCTCGGCAATGATGAGTT
****
34741579 GATTTTTTTTTTAAATTAAAATATACTCAACGTGTCTTGAGCTCACACTCATTTCTCGCAATAT
125 GATTTTTAAAATAAATTAAAATATACTCAACGTGTCTTGAGCTCACACTCATTTCTCGCAATAT
34741643 GAGTTGAATTTT-AAA-AAACAAAAATTAAAAGGCTTAACTCACCTCTCGCAATA-G-GTC-ATT
1 -AGTT-AATTTTGAAACAAAC--AAATTAAAAGGCTTAACTCA-CTCTCGCAATATGAGTCAATT
34741703 TAAAACTA-AACTAAAATACCTCGGCGTGCCCCGAG-GC-ACTCACTTCTC-GCAAT-ATGAGTT
61 TAAAACTATAACTAAAATACCTCGGCGTGCCCCGAGCGCAACTCA-TTCTCGGCAATGATGAGTT
*
34741763 GATTTTTAAAATATATTTAAAA-ATAACCTCAACGTGTTCTTGAAGGCTCGA-ACTCATTTCTC-
125 GATTTTTAAAATA-AATTAAAATAT-A-CTCAACGTG-TCTTG-A-GCTC-ACACTCATTTCTCG
34741825 CAATAT
183 CAATAT
34741831 -GTT-ATTTTGAAACAAACAAATTAAAAGGCTTAACTCACTCTCGC-ATATGAGTCAATTT-AAA
1 AGTTAATTTTGAAACAAACAAATTAAAAGGCTTAACTCACTCTCGCAATATGAGTCAATTTAAAA
* * *
34741892 -TATAACTAAAATACC-CAGTTCGCGTCGGACTCGAGGCTCAACTCGCACTGTCTC-GC-AT-AT
66 CTATAACTAAAATACCTC-G---GCGT--GCCCCGA-GCGCAACT--CA-T-TCTCGGCAATGAT
*** *
34741952 GAGGTTTGATTTTTTTTTATAAATTAAAAAATACCTC-ACGTGTCTTGAGGCT---ACTGCAATT
120 GA-G-TTGA-TTTTTAAAATAAATTAAAATATA-CTCAACGTGTCTTGA-GCTCACACT-C-A-T
34742013 TTCTTCGGCAATAT
177 TTC-TC-GCAATAT
* *
34742027 GAGTTTGATTTTG-AA-AAACAAAATAAAAGGCTTAA-TCACCTCTCCGGCAATCATG-GTCAAT
1 -AG-TTAATTTTGAAACAAACAAATTAAAAGGCTTAACTCA-CTCT-C-GCAAT-ATGAGTCAAT
* * * *
34742088 TTAACA-TA-AACTAAAAAGTACCTTGCGCGTGCCCCAAGGCTCAACTCACTTCTC-GCAAT-AT
60 TTAAAACTATAACT-AAAA-TACCTCG-GCGTGCCCCGA-GCGCAACTCA-TTCTCGGCAATGAT
* *
34742149 GGGTTGATTTTT-TAA-AAATTAAAA-AT-CGTC-ACGTGT-TTGAGGCTCA-ACTCATTTCTCG
120 GAGTTGATTTTTAAAATAAATTAAAATATAC-TCAACGTGTCTTGA-GCTCACACTCATTTCTCG
*
34742207 TAATAT
183 CAATAT
34742213 GAGGTTATTT
Statistics
Matches: 652, Mismatches: 36, Indels: 157
0.77 0.04 0.19
Matches are distributed among these distances:
182 3 0.00
183 11 0.02
184 62 0.10
185 25 0.04
186 28 0.04
187 36 0.06
188 14 0.02
189 41 0.06
190 35 0.05
191 33 0.05
192 75 0.12
193 49 0.08
194 34 0.05
195 30 0.05
196 42 0.06
197 32 0.05
198 35 0.05
199 22 0.03
200 10 0.02
201 19 0.03
202 11 0.02
203 5 0.01
ACGTcount: A:0.34, C:0.21, G:0.15, T:0.31
Consensus pattern (188 bp):
AGTTAATTTTGAAACAAACAAATTAAAAGGCTTAACTCACTCTCGCAATATGAGTCAATTTAAAA
CTATAACTAAAATACCTCGGCGTGCCCCGAGCGCAACTCATTCTCGGCAATGATGAGTTGATTTT
TAAAATAAATTAAAATATACTCAACGTGTCTTGAGCTCACACTCATTTCTCGCAATAT
Found at i:34754064 original size:35 final size:35
Alignment explanation
Indices: 34754018--34754153 Score: 150
Period size: 35 Copynumber: 3.9 Consensus size: 35
34754008 ACGAGATTTT
**
34754018 TTTTTGAAAACACGAAAATTTTCAAAACACCGAAA
1 TTTTTGAAAACACGAAAATTTTTGAAACACCGAAA
* ** *
34754053 TTTTTGAAAACAAGAGGATTTTTGAAATA-CGAAAA
1 TTTTTGAAAACACGAAAATTTTTGAAACACCG-AAA
* *
34754088 ATTTTGAAAACACGAAAATTTTTGAAACACGGAAA
1 TTTTTGAAAACACGAAAATTTTTGAAACACCGAAA
*
34754123 TTTTTG-AAACACAAAAATTTTTAGAAGACAC
1 TTTTTGAAAACACGAAAATTTTT-GAA-ACAC
34754154 TAAAAATTTT
Statistics
Matches: 83, Mismatches: 14, Indels: 7
0.80 0.13 0.07
Matches are distributed among these distances:
34 17 0.20
35 61 0.73
36 5 0.06
ACGTcount: A:0.47, C:0.12, G:0.12, T:0.29
Consensus pattern (35 bp):
TTTTTGAAAACACGAAAATTTTTGAAACACCGAAA
Found at i:34754144 original size:18 final size:17
Alignment explanation
Indices: 34754018--34754168 Score: 117
Period size: 17 Copynumber: 8.5 Consensus size: 17
34754008 ACGAGATTTT
*
34754018 TTTTTGAAAACACGAAAA
1 TTTTTG-AAACACAAAAA
** **
34754036 TTTTCAAAACACCGAAA
1 TTTTTGAAACACAAAAA
*
34754053 TTTTTGAAA-ACAAGAGGA
1 TTTTTGAAACACAA-A-AA
*
34754071 TTTTTGAAATACGAAAAA
1 TTTTTGAAACAC-AAAAA
*
34754089 -TTTTGAAAACACGAAAA
1 TTTTTG-AAACACAAAAA
**
34754106 TTTTTGAAACACGGAAA
1 TTTTTGAAACACAAAAA
34754123 TTTTTGAAACACAAAAA
1 TTTTTGAAACACAAAAA
34754140 TTTTTAGAAGACACTAAAAA
1 TTTTT-GAA-ACAC-AAAAA
*
34754160 TTTTGGAAA
1 TTTTTGAAA
34754169 ATGGATTTTT
Statistics
Matches: 108, Mismatches: 16, Indels: 18
0.76 0.11 0.13
Matches are distributed among these distances:
16 2 0.02
17 56 0.52
18 29 0.27
19 10 0.09
20 11 0.10
ACGTcount: A:0.48, C:0.11, G:0.13, T:0.29
Consensus pattern (17 bp):
TTTTTGAAACACAAAAA
Found at i:34754379 original size:20 final size:19
Alignment explanation
Indices: 34754341--34754387 Score: 53
Period size: 20 Copynumber: 2.5 Consensus size: 19
34754331 GAATATATTT
34754341 TTTTTGAAACACGAGAAAAA
1 TTTTTGAAACACG-GAAAAA
*
34754361 TTTTTGAAGGCAC-GAAAAA
1 TTTTTGAA-ACACGGAAAAA
34754380 -TTTTGAAA
1 TTTTTGAAA
34754388 AATAGAAATT
Statistics
Matches: 24, Mismatches: 2, Indels: 5
0.77 0.06 0.16
Matches are distributed among these distances:
18 7 0.29
19 6 0.25
20 8 0.33
21 3 0.12
ACGTcount: A:0.45, C:0.09, G:0.17, T:0.30
Consensus pattern (19 bp):
TTTTTGAAACACGGAAAAA
Found at i:34754760 original size:8 final size:8
Alignment explanation
Indices: 34754747--34754834 Score: 92
Period size: 8 Copynumber: 11.0 Consensus size: 8
34754737 TGAAACTCTT
34754747 TTTTTTTC
1 TTTTTTTC
34754755 TTTTTTTC
1 TTTTTTTC
34754763 TTCTTTTTTCC
1 -T-TTTTTT-C
34754774 TTTTTTTC
1 TTTTTTTC
*
34754782 -TCTTTTC
1 TTTTTTTC
34754789 TTTTTTTC
1 TTTTTTTC
*
34754797 -TTCTTTC
1 TTTTTTTC
34754804 TTTTTTTC
1 TTTTTTTC
34754812 -TTTTTTC
1 TTTTTTTC
* *
34754819 TTTCTCTC
1 TTTTTTTC
34754827 TTTTTTTC
1 TTTTTTTC
34754835 CTGGCCTGCT
Statistics
Matches: 66, Mismatches: 8, Indels: 12
0.77 0.09 0.14
Matches are distributed among these distances:
7 19 0.29
8 32 0.48
9 7 0.11
10 7 0.11
11 1 0.02
ACGTcount: A:0.00, C:0.19, G:0.00, T:0.81
Consensus pattern (8 bp):
TTTTTTTC
Found at i:34754789 original size:23 final size:23
Alignment explanation
Indices: 34754743--34754834 Score: 93
Period size: 23 Copynumber: 4.1 Consensus size: 23
34754733 GAATTGAAAC
* *
34754743 TCTTTTTT-TTTCTTT-TTTTCT
1 TCTTTTTTCCTTCTTTCTTTTTT
34754764 TCTTTTTTCCTT-TTT-TTCTCTTT
1 TCTTTTTTCCTTCTTTCTT-T-TTT
*
34754787 TCTTTTTTTCTTCTTTCTTTTTT
1 TCTTTTTTCCTTCTTTCTTTTTT
* *
34754810 TCTTTTTTCTTTCTCTCTTTTTT
1 TCTTTTTTCCTTCTTTCTTTTTT
34754833 TC
1 TC
34754835 CTGGCCTGCT
Statistics
Matches: 60, Mismatches: 6, Indels: 8
0.81 0.08 0.11
Matches are distributed among these distances:
21 13 0.22
22 3 0.05
23 38 0.63
24 4 0.07
25 2 0.03
ACGTcount: A:0.00, C:0.20, G:0.00, T:0.80
Consensus pattern (23 bp):
TCTTTTTTCCTTCTTTCTTTTTT
Found at i:34754815 original size:38 final size:37
Alignment explanation
Indices: 34754755--34754834 Score: 103
Period size: 38 Copynumber: 2.2 Consensus size: 37
34754745 TTTTTTTTTC
34754755 TTTTT-TTCTTCTTTTTTCCTTTTTTTCTCTT-T-TCTT
1 TTTTTCTTCTTCTTTTTTCC-TTTTTTCT-TTCTCTCTT
*
34754791 TTTTTCTTCTTTCTTTTTTTCTTTTTTCTTTCTCTCTT
1 TTTTTCTTC-TTCTTTTTTCCTTTTTTCTTTCTCTCTT
34754829 TTTTTC
1 TTTTTC
34754835 CTGGCCTGCT
Statistics
Matches: 39, Mismatches: 1, Indels: 6
0.85 0.02 0.13
Matches are distributed among these distances:
36 7 0.18
37 12 0.31
38 20 0.51
ACGTcount: A:0.00, C:0.20, G:0.00, T:0.80
Consensus pattern (37 bp):
TTTTTCTTCTTCTTTTTTCCTTTTTTCTTTCTCTCTT
Found at i:34754823 original size:34 final size:34
Alignment explanation
Indices: 34754743--34754823 Score: 105
Period size: 34 Copynumber: 2.4 Consensus size: 34
34754733 GAATTGAAAC
34754743 TCTTTTTT-TTTCTTTTTTTCTTCTTTTTTCCTT
1 TCTTTTTTCTTTCTTTTTTTCTTCTTTTTTCCTT
* *
34754776 T-TTTTCTCTTTTCTTTTTTTCTTCTTTCTTT-TTT
1 TCTTTTTTC-TTTCTTTTTTTCTTCTTT-TTTCCTT
34754810 TCTTTTTTCTTTCT
1 TCTTTTTTCTTTCT
34754824 CTCTTTTTTT
Statistics
Matches: 41, Mismatches: 3, Indels: 7
0.80 0.06 0.14
Matches are distributed among these distances:
32 5 0.12
33 1 0.02
34 26 0.63
35 9 0.22
ACGTcount: A:0.00, C:0.19, G:0.00, T:0.81
Consensus pattern (34 bp):
TCTTTTTTCTTTCTTTTTTTCTTCTTTTTTCCTT
Found at i:34754828 original size:15 final size:15
Alignment explanation
Indices: 34754743--34754832 Score: 103
Period size: 15 Copynumber: 6.1 Consensus size: 15
34754733 GAATTGAAAC
*
34754743 TCTTTTTTT-TTCTT
1 TCTTTTTTTCTTTTT
*
34754757 T-TTTTCTTCTTTTT
1 TCTTTTTTTCTTTTT
*
34754771 TCCTTTTTTTCTCTTT
1 T-CTTTTTTTCTTTTT
*
34754787 TCTTTTTTTCTTCTT
1 TCTTTTTTTCTTTTT
34754802 TCTTTTTTTCTTTTT
1 TCTTTTTTTCTTTTT
* *
34754817 TCTTTCTCTCTTTTT
1 TCTTTTTTTCTTTTT
34754832 T
1 T
34754833 TCCTGGCCTG
Statistics
Matches: 64, Mismatches: 9, Indels: 5
0.82 0.12 0.06
Matches are distributed among these distances:
13 6 0.09
14 6 0.09
15 40 0.62
16 12 0.19
ACGTcount: A:0.00, C:0.19, G:0.00, T:0.81
Consensus pattern (15 bp):
TCTTTTTTTCTTTTT
Found at i:34755001 original size:31 final size:32
Alignment explanation
Indices: 34754961--34755034 Score: 89
Period size: 31 Copynumber: 2.3 Consensus size: 32
34754951 TTTTTGGGCC
*
34754961 TTTTCTTTTTGGGCTGCTTT-TTTTTGCTTTG-G
1 TTTT-TTTTTGGGCTGATTTGTTTTT-CTTTGTG
*
34754993 TTTTTTTTTGGGCTGATTTGTTTTTTTTTGTG
1 TTTTTTTTTGGGCTGATTTGTTTTTCTTTGTG
34755025 TTGTTTTTTT
1 TT-TTTTTTT
34755035 TAATTAATTT
Statistics
Matches: 37, Mismatches: 2, Indels: 5
0.84 0.05 0.11
Matches are distributed among these distances:
31 18 0.49
32 12 0.32
33 7 0.19
ACGTcount: A:0.01, C:0.07, G:0.20, T:0.72
Consensus pattern (32 bp):
TTTTTTTTTGGGCTGATTTGTTTTTCTTTGTG
Found at i:34755164 original size:3 final size:3
Alignment explanation
Indices: 34755158--34755182 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
34755148 TTTTTTTTCT
34755158 TTC TTC TTC TTC TTC TTC TTC TTC T
1 TTC TTC TTC TTC TTC TTC TTC TTC T
34755183 CCTCCTACAC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.00, C:0.32, G:0.00, T:0.68
Consensus pattern (3 bp):
TTC
Found at i:34755569 original size:29 final size:29
Alignment explanation
Indices: 34755536--34755652 Score: 94
Period size: 30 Copynumber: 3.9 Consensus size: 29
34755526 TGTAATTTTT
*
34755536 AGAAAATTTAGGATTAAAATGAAATTTAA
1 AGAAAATTTAGGGTTAAAATGAAATTTAA
* * *
34755565 TGAAAGTTTAGGGGTCT-AAGTGAAATTTAA
1 AGAAAATTTA-GGGT-TAAAATGAAATTTAA
* *
34755595 AGAAAGTTTAAGGGTCAAAATGAAATTT-A
1 AGAAAATTT-AGGGTTAAAATGAAATTTAA
* * *
34755624 GGAAAAGTTTAGGGGTCAAAATGCAATTT
1 AGAAAA-TTTA-GGGTTAAAATGAAATTT
34755653 TTATTTTTAA
Statistics
Matches: 72, Mismatches: 10, Indels: 11
0.77 0.11 0.12
Matches are distributed among these distances:
29 14 0.19
30 56 0.78
31 2 0.03
ACGTcount: A:0.44, C:0.03, G:0.22, T:0.30
Consensus pattern (29 bp):
AGAAAATTTAGGGTTAAAATGAAATTTAA
Found at i:34755591 original size:30 final size:30
Alignment explanation
Indices: 34755551--34755652 Score: 134
Period size: 30 Copynumber: 3.4 Consensus size: 30
34755541 ATTTAGGATT
*
34755551 AAAATGAAATTTAATGAAAGTTTAGGGGTC
1 AAAATGAAATTTAAAGAAAGTTTAGGGGTC
* * *
34755581 TAAGTGAAATTTAAAGAAAGTTTAAGGGTC
1 AAAATGAAATTTAAAGAAAGTTTAGGGGTC
*
34755611 AAAATGAAATTT-AGGAAAAGTTTAGGGGTC
1 AAAATGAAATTTAAAG-AAAGTTTAGGGGTC
*
34755641 AAAATGCAATTT
1 AAAATGAAATTT
34755653 TTATTTTTAA
Statistics
Matches: 62, Mismatches: 9, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
29 2 0.03
30 60 0.97
ACGTcount: A:0.44, C:0.04, G:0.23, T:0.29
Consensus pattern (30 bp):
AAAATGAAATTTAAAGAAAGTTTAGGGGTC
Found at i:34755673 original size:14 final size:15
Alignment explanation
Indices: 34755648--34755682 Score: 54
Period size: 14 Copynumber: 2.4 Consensus size: 15
34755638 GTCAAAATGC
34755648 AATTTTTATTTTTAA
1 AATTTTTATTTTTAA
*
34755663 AATTTTT-TTTTTGA
1 AATTTTTATTTTTAA
34755677 AATTTT
1 AATTTT
34755683 GAAAATTAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 12 0.63
15 7 0.37
ACGTcount: A:0.29, C:0.00, G:0.03, T:0.69
Consensus pattern (15 bp):
AATTTTTATTTTTAA
Found at i:34757263 original size:48 final size:48
Alignment explanation
Indices: 34757200--34757311 Score: 188
Period size: 48 Copynumber: 2.3 Consensus size: 48
34757190 TATAAGATCG
34757200 TGTCTGGGACATGGCATTGACATCGATATGTGATCCCATGTAAGACCA
1 TGTCTGGGACATGGCATTGACATCGATATGTGATCCCATGTAAGACCA
* ** *
34757248 TGTCTGGGACATGGCATTGGCATCGATATGTGATTTCGTGTAAGACCA
1 TGTCTGGGACATGGCATTGACATCGATATGTGATCCCATGTAAGACCA
34757296 TGTCTGGGACATGGCA
1 TGTCTGGGACATGGCA
34757312 CCGATATGAG
Statistics
Matches: 60, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
48 60 1.00
ACGTcount: A:0.24, C:0.19, G:0.29, T:0.29
Consensus pattern (48 bp):
TGTCTGGGACATGGCATTGACATCGATATGTGATCCCATGTAAGACCA
Found at i:34757329 original size:42 final size:44
Alignment explanation
Indices: 34757238--34757338 Score: 116
Period size: 48 Copynumber: 2.2 Consensus size: 44
34757228 TGTGATCCCA
* **
34757238 TGTAAGACCATGTCTGGGACATGGCATTGGCATCGATATGTGATTTCG
1 TGTAAGACCATGTCTGGGACATGGCA---GCA-CGATATGAGACATCG
34757286 TGTAAGACCATGTCTGGGACATGGCA-C-CGATATGAGACATCG
1 TGTAAGACCATGTCTGGGACATGGCAGCACGATATGAGACATCG
*
34757328 TGTAATACCAT
1 TGTAAGACCAT
34757339 AGCTGGGCTA
Statistics
Matches: 49, Mismatches: 4, Indels: 6
0.83 0.07 0.10
Matches are distributed among these distances:
42 22 0.45
44 1 0.02
48 26 0.53
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.28
Consensus pattern (44 bp):
TGTAAGACCATGTCTGGGACATGGCAGCACGATATGAGACATCG
Found at i:34759063 original size:16 final size:14
Alignment explanation
Indices: 34759025--34759056 Score: 55
Period size: 14 Copynumber: 2.3 Consensus size: 14
34759015 ATATGTAAAA
*
34759025 GAAAATATATGCAT
1 GAAAATATATACAT
34759039 GAAAATATATACAT
1 GAAAATATATACAT
34759053 GAAA
1 GAAA
34759057 TATTATAAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.56, C:0.06, G:0.12, T:0.25
Consensus pattern (14 bp):
GAAAATATATACAT
Found at i:34759658 original size:15 final size:15
Alignment explanation
Indices: 34759636--34759669 Score: 61
Period size: 15 Copynumber: 2.3 Consensus size: 15
34759626 TAGAGATGGC
34759636 AATA-AATAATAGAA
1 AATATAATAATAGAA
34759650 AATATAATAATAGAA
1 AATATAATAATAGAA
34759665 AATAT
1 AATAT
34759670 CAAAATTAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 4 0.21
15 15 0.79
ACGTcount: A:0.68, C:0.00, G:0.06, T:0.26
Consensus pattern (15 bp):
AATATAATAATAGAA
Found at i:34760018 original size:14 final size:14
Alignment explanation
Indices: 34759999--34760025 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
34759989 GGCGGGTCGG
34759999 GTCGGACAGTTCGA
1 GTCGGACAGTTCGA
34760013 GTCGGACAGTTCG
1 GTCGGACAGTTCG
34760026 GGTCATGCTC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.19, C:0.22, G:0.37, T:0.22
Consensus pattern (14 bp):
GTCGGACAGTTCGA
Found at i:34766655 original size:21 final size:22
Alignment explanation
Indices: 34766629--34766675 Score: 78
Period size: 21 Copynumber: 2.2 Consensus size: 22
34766619 CTCTGCTCAA
*
34766629 ACTCCACCTGCTGCGGAGTAC-
1 ACTCCACCTGCTGCGAAGTACT
34766650 ACTCCACCTGCTGCGAAGTACT
1 ACTCCACCTGCTGCGAAGTACT
34766672 ACTC
1 ACTC
34766676 ACTCCTTCTG
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
21 20 0.83
22 4 0.17
ACGTcount: A:0.21, C:0.38, G:0.19, T:0.21
Consensus pattern (22 bp):
ACTCCACCTGCTGCGAAGTACT
Found at i:34785263 original size:44 final size:47
Alignment explanation
Indices: 34785113--34785422 Score: 192
Period size: 47 Copynumber: 6.6 Consensus size: 47
34785103 TTGCCGCTGC
* * * * *
34785113 CATGTCCCAGACATGGTCTTACGCTGGCTATC-TCCATCGAGGCTGATG
1 CATGTCCCAGACAT-GTCTTACACTAGCTAACAT-CATTGAGGCCGATG
* ** * * ** * *
34785161 CCATGTCTCAGACATGGTCTTACACTAGCTCTCGTGTATACATGCTGATG
1 -CATGTCCCAGACAT-GTCTTACACTAGCTAACAT-CATTGAGGCCGATG
34785211 CATGTCCCAGACATGTCTTACACTAGCATGAA-A-C-TT-A-GCCGATG
1 CATGTCCCAGACATGTCTTACACTAGC-T-AACATCATTGAGGCCGATG
* *
34785255 CATGTCCCAGACACGTCTTACACTGGCTAACATCATTGAGGCCGATG
1 CATGTCCCAGACATGTCTTACACTAGCTAACATCATTGAGGCCGATG
* *
34785302 CATGTCCCAGACATGTCTTACACTGGC--AC-TCACCTCT-ACGCCGATG
1 CATGTCCCAGACATGTCTTACACTAGCTAACATCA--T-TGAGGCCGATG
** ** * * * *
34785348 CCATGTCCCAGATGTGGTCTTACACGGGCTATCATGA-TGCGGCTGATG
1 -CATGTCCCAGACAT-GTCTTACACTAGCTAACATCATTGAGGCCGATG
*
34785396 CATGTCCCAGACACGTCTTACACTAGC
1 CATGTCCCAGACATGTCTTACACTAGC
34785423 CCTCGTCTCA
Statistics
Matches: 211, Mismatches: 33, Indels: 37
0.75 0.12 0.13
Matches are distributed among these distances:
42 2 0.01
43 2 0.01
44 35 0.17
45 5 0.02
46 22 0.10
47 58 0.27
48 31 0.15
49 42 0.20
50 12 0.06
51 2 0.01
ACGTcount: A:0.23, C:0.30, G:0.21, T:0.26
Consensus pattern (47 bp):
CATGTCCCAGACATGTCTTACACTAGCTAACATCATTGAGGCCGATG
Found at i:34785408 original size:94 final size:92
Alignment explanation
Indices: 34785113--34785471 Score: 296
Period size: 94 Copynumber: 3.8 Consensus size: 92
34785103 TTGCCGCTGC
* * * * *
34785113 CATGTCCCAGACATGGTCTTACGCTGGCTATCTC-CATCGAGGCTGATGCCATGTCTCAGACATG
1 CATGTCCCAGACAT-GTCTTACACTGGC-A-CTCACCTCTA-GCCGATGCCATGTCCCAGA-ATG
* * * * *
34785177 GTCTTACACTAGCTCTCGTGTATACATGCTGATG
61 GTCTTACACTGGCTATCATG-ATGC-GGCTGATG
* * * *
34785211 CATGTCCCAGACATGTCTTACACTAGCA-TGAAACT-TAGCCGATG-CATGTCCCAGACA-CGTC
1 CATGTCCCAGACATGTCTTACACTGGCACT-CACCTCTAGCCGATGCCATGTCCCAGA-ATGGTC
* * * *
34785272 TTACACTGGCTAACATCATTGAGGCCGATG
64 TTACACTGGCTATCATGA-TGCGGCTGATG
*
34785302 CATGTCCCAGACATGTCTTACACTGGCACTCACCTCTACGCCGATGCCATGTCCCAGATGTGGTC
1 CATGTCCCAGACATGTCTTACACTGGCACTCACCTCTA-GCCGATGCCATGTCCCAGA-ATGGTC
*
34785367 TTACACGGGCTATCATGATGCGGCTGATG
64 TTACACTGGCTATCATGATGCGGCTGATG
* * * ** * * *
34785396 CATGTCCCAGACACGTCTTACACTAGCCCTCGTCTCAATGCTGATGCCATGTCCTAGACATGGTC
1 CATGTCCCAGACATGTCTTACACTGGCACTCACCTCTA-GCCGATGCCATGTCCCAGA-ATGGTC
*
34785461 TTATACTGGCT
64 TTACACTGGCT
34785472 CTCACATAAC
Statistics
Matches: 211, Mismatches: 42, Indels: 20
0.77 0.15 0.07
Matches are distributed among these distances:
91 37 0.18
92 19 0.09
93 19 0.09
94 90 0.43
95 19 0.09
96 2 0.01
97 11 0.05
98 14 0.07
ACGTcount: A:0.22, C:0.30, G:0.21, T:0.27
Consensus pattern (92 bp):
CATGTCCCAGACATGTCTTACACTGGCACTCACCTCTAGCCGATGCCATGTCCCAGAATGGTCTT
ACACTGGCTATCATGATGCGGCTGATG
Found at i:34790949 original size:16 final size:16
Alignment explanation
Indices: 34790928--34790971 Score: 54
Period size: 16 Copynumber: 2.8 Consensus size: 16
34790918 GTTCTATTTC
34790928 ATTTATTATACTTAAT
1 ATTTATTATACTTAAT
* *
34790944 ATTTATT-TATCATATT
1 ATTTATTATA-CTTAAT
34790960 ATTTATTATACT
1 ATTTATTATACT
34790972 ACATATACTT
Statistics
Matches: 23, Mismatches: 3, Indels: 4
0.77 0.10 0.13
Matches are distributed among these distances:
15 2 0.09
16 19 0.83
17 2 0.09
ACGTcount: A:0.34, C:0.07, G:0.00, T:0.59
Consensus pattern (16 bp):
ATTTATTATACTTAAT
Found at i:34800168 original size:20 final size:19
Alignment explanation
Indices: 34800143--34800180 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 19
34800133 CTTTATTTTT
34800143 CTCCCCTCTCTCTCTCCCTC
1 CTCCCCTCT-TCTCTCCCTC
*
34800163 CTCCCCTCTTTTCTCCCT
1 CTCCCCTCTTCTCTCCCT
34800181 TGCACACCAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 8 0.47
20 9 0.53
ACGTcount: A:0.00, C:0.61, G:0.00, T:0.39
Consensus pattern (19 bp):
CTCCCCTCTTCTCTCCCTC
Found at i:34801923 original size:26 final size:25
Alignment explanation
Indices: 34801871--34801924 Score: 65
Period size: 26 Copynumber: 2.1 Consensus size: 25
34801861 TTTATCTTTA
* *
34801871 TTTATCTTCTTTAAGTATTTTTTAT
1 TTTATCTTCTTTAAGTATATTTCAT
34801896 TTTATCTTCCTTTAA-TACTATTTCAT
1 TTTATCTT-CTTTAAGTA-TATTTCAT
34801922 TTT
1 TTT
34801925 TAAGTTTTAT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
25 10 0.40
26 15 0.60
ACGTcount: A:0.20, C:0.13, G:0.02, T:0.65
Consensus pattern (25 bp):
TTTATCTTCTTTAAGTATATTTCAT
Found at i:34809894 original size:68 final size:64
Alignment explanation
Indices: 34809777--34810029 Score: 174
Period size: 68 Copynumber: 3.9 Consensus size: 64
34809767 ATACAGATAG
* ** * *
34809777 TATGTAGCTAGGTCACATGTATGATGCTGA-GTGCACATCATGT-GTACAAGAGAGCTACAAGAC
1 TATGTAGCTAGGTCGCATGCGTGATACT-ATGTGCACACCATGTAG-ACAAGAGAGCTAC--GAC
34809840 ATTA
62 A-TA
* * **
34809844 TGATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATA
1 T-ATGTAGCTAGGTCGCATGCGTGATACTATGTGCACACCATGTAGACAAGAGAGCTACGACATA
* * * * * *
34809909 TATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGTAGACAAGAGAGCTACGAGA
1 TATGTAGCTAGGTCGCATGCGTGATACTA--TG-TGCACACCATGTAGACAAGAGAGCTACGACA
34809974 TA
63 TA
* * * * * **
34809976 AAT-TGGCTAGGTCACATGGGTGGTACTGA-GTGTTCACCATGT-GTACAAGAGAGC
1 TATGTAGCTAGGTCGCATGCGTGATACT-ATGTGCACACCATGTAG-ACAAGAGAGC
34810030 CGAACTATAT
Statistics
Matches: 154, Mismatches: 24, Indels: 20
0.78 0.12 0.10
Matches are distributed among these distances:
62 1 0.01
63 19 0.12
64 25 0.16
65 3 0.02
66 23 0.15
67 35 0.23
68 47 0.31
69 1 0.01
ACGTcount: A:0.30, C:0.17, G:0.29, T:0.25
Consensus pattern (64 bp):
TATGTAGCTAGGTCGCATGCGTGATACTATGTGCACACCATGTAGACAAGAGAGCTACGACATA
Found at i:34809927 original size:64 final size:64
Alignment explanation
Indices: 34809846--34810029 Score: 203
Period size: 67 Copynumber: 2.8 Consensus size: 64
34809836 AGACATTATG
* * *
34809846 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * *
34809910 ATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTA--TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
34809975 AA
63 AA
* * *
34809977 AT-TGGCTAGGTCACATGGGTGGTACTGA-GTGTTCACCATGT-GTACAAGAGAGC
1 ATGTAGCTAGGTCGCATGGGTGGTACT-ATGTGTACACCATGTAG-ACAAGAGAGC
34810030 CGAACTATAT
Statistics
Matches: 99, Mismatches: 16, Indels: 11
0.79 0.13 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 25 0.25
66 21 0.21
67 33 0.33
ACGTcount: A:0.29, C:0.17, G:0.31, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:34814003 original size:49 final size:49
Alignment explanation
Indices: 34813894--34814256 Score: 186
Period size: 46 Copynumber: 7.7 Consensus size: 49
34813884 GGGTTAAGAT
*
34813894 GCCGACTCCATGTCCCAGACATGGTCTTACACTGGCTTTCATATAGCGAG
1 GCCGACGCCATGTCCCAGACA-GGTCTTACACTGGCTTTCATATAGCGAG
* * * *
34813944 GCCGATGCCATGTCTCAGACAGGTCTTACACTGG-TTCTCATCTATCG-G
1 GCCGACGCCATGTCCCAGACAGGTCTTACACTGGCTT-TCATATAGCGAG
* * * ** *
34813992 TGTCGACGCCATGTCCCAGACAGGTCTTACACTGAC--AC-TCCA-C-AA
1 -GCCGACGCCATGTCCCAGACAGGTCTTACACTGGCTTTCATATAGCGAG
* * * *
34814037 GCTGACGCCATGTCCCAGATAGGTCTTACACTAGCTTGT-ATATCGCGAG
1 GCCGACGCCATGTCCCAGACAGGTCTTACACTGGCTT-TCATATAGCGAG
* * * * * * * *
34814086 GCCGATG-CATGTCCCAAACATGTCTTACACTAGCTGT-AGTCT--CAAT
1 GCCGACGCCATGTCCCAGACAGGTCTTACACTGGCTTTCA-TATAGCGAG
* * * * ** **
34814132 ACCGATG-TATGTCCCAGACATGTCTTACACTGGCTTAAATATCTCGAG
1 GCCGACGCCATGTCCCAGACAGGTCTTACACTGGCTTTCATATAGCGAG
* * * * * *
34814180 GCCGATG-CATGTCCCATACATGTTTTACACTGGCTCTC--AT-GCTATG
1 GCCGACGCCATGTCCCAGACAGGTCTTACACTGGCTTTCATATAGCGA-G
* * *
34814226 GCTGATG-CATGTCCCAGACATGTCTTACACT
1 GCCGACGCCATGTCCCAGACAGGTCTTACACT
34814257 AGCACACATA
Statistics
Matches: 246, Mismatches: 52, Indels: 34
0.74 0.16 0.10
Matches are distributed among these distances:
44 30 0.12
45 3 0.01
46 69 0.28
47 5 0.02
48 64 0.26
49 57 0.23
50 18 0.07
ACGTcount: A:0.23, C:0.29, G:0.20, T:0.28
Consensus pattern (49 bp):
GCCGACGCCATGTCCCAGACAGGTCTTACACTGGCTTTCATATAGCGAG
Found at i:34814111 original size:48 final size:47
Alignment explanation
Indices: 34814045--34814259 Score: 204
Period size: 46 Copynumber: 4.6 Consensus size: 47
34814035 AAGCTGACGC
* *
34814045 CATGTCCCAGATAGGTCTTACACTAGCTTGTATATCGCGAGGCCGATG
1 CATGTCCCAGACATGTCTTACACTAGC-TGTATATCGCGAGGCCGATG
* * * * **
34814093 CATGTCCCAAACATGTCTTACACTAGCTGTA-GTCTCAATACCGATG
1 CATGTCCCAGACATGTCTTACACTAGCTGTATATCGCGAGGCCGATG
* * *
34814139 TATGTCCCAGACATGTCTTACACTGGCT-TAAATATCTCGAGGCCGATG
1 CATGTCCCAGACATGTCTTACACTAGCTGT--ATATCGCGAGGCCGATG
* * * * * * *
34814187 CATGTCCCATACATGTTTTACACTGGCTCT-CAT-GCTATGGCTGATG
1 CATGTCCCAGACATGTCTTACACTAGCTGTATATCGCGA-GGCCGATG
34814233 CATGTCCCAGACATGTCTTACACTAGC
1 CATGTCCCAGACATGTCTTACACTAGC
34814260 ACACATATCA
Statistics
Matches: 137, Mismatches: 25, Indels: 12
0.79 0.14 0.07
Matches are distributed among these distances:
45 3 0.02
46 68 0.50
47 5 0.04
48 60 0.44
49 1 0.01
ACGTcount: A:0.24, C:0.27, G:0.20, T:0.29
Consensus pattern (47 bp):
CATGTCCCAGACATGTCTTACACTAGCTGTATATCGCGAGGCCGATG
Found at i:34814161 original size:94 final size:94
Alignment explanation
Indices: 34814045--34814259 Score: 265
Period size: 94 Copynumber: 2.3 Consensus size: 94
34814035 AAGCTGACGC
* * **
34814045 CATGTCCCAGATAGGTCTTACACTAGCTTGTATATCGCGAGGCCGATGCATGTCCCAAACATGTC
1 CATGTCCCAGACATGTCTTACACTAGCTTAAATATCGCGAGGCCGATGCATGTCCCAAACATGTC
*
34814110 TTACACTAGCTGT-A-GTCTCAAT-ACCGATG
66 TTACACTAGCTCTCATG-CT--ATGACCGATG
* * * * *
34814139 TATGTCCCAGACATGTCTTACACTGGCTTAAATATCTCGAGGCCGATGCATGTCCCATACATGTT
1 CATGTCCCAGACATGTCTTACACTAGCTTAAATATCGCGAGGCCGATGCATGTCCCAAACATGTC
* * *
34814204 TTACACTGGCTCTCATGCTATGGCTGATG
66 TTACACTAGCTCTCATGCTATGACCGATG
34814233 CATGTCCCAGACATGTCTTACACTAGC
1 CATGTCCCAGACATGTCTTACACTAGC
34814260 ACACATATCA
Statistics
Matches: 103, Mismatches: 15, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
93 2 0.02
94 97 0.94
95 3 0.03
96 1 0.01
ACGTcount: A:0.24, C:0.27, G:0.20, T:0.29
Consensus pattern (94 bp):
CATGTCCCAGACATGTCTTACACTAGCTTAAATATCGCGAGGCCGATGCATGTCCCAAACATGTC
TTACACTAGCTCTCATGCTATGACCGATG
Found at i:34819173 original size:53 final size:54
Alignment explanation
Indices: 34819105--34819420 Score: 352
Period size: 53 Copynumber: 5.9 Consensus size: 54
34819095 TTTCCTTTTT
* * * *
34819105 GAACTTACCATTGCCATGTCTTGACATGGTCTTACGTGGTATCCTTGCCTTAT-
1 GAACTCACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATA
* * * *
34819158 GAACTCACCAATGCCATGCCTTGGCATGATCTTACATGGGA-CCTTTACCTTATA
1 GAACTCACCAATGCCATGCCTTGACATGGTCTTACATGGTATCC-TTGCCTTATA
* * * *
34819212 GTAATTCATCAATTCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTAT-
1 G-AACTCACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATA
* *
34819266 GAACTCACCAATGCCATGCCTTGGCATGGTCTTACATGGGA-CCTTTGCCTTATA
1 GAACTCACCAATGCCATGCCTTGACATGGTCTTACATGGTATCC-TTGCCTTATA
* * * * *
34819320 GTAACTCATCAATGTCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTATA
1 G-AACTCACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATA
* * * * *
34819375 AAACTTATCAATGCCATGCCTTGGCATGGTCTTACATGATATCCTT
1 GAACTCACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTT
34819421 ATCTTACCAA
Statistics
Matches: 220, Mismatches: 35, Indels: 15
0.81 0.13 0.06
Matches are distributed among these distances:
52 4 0.02
53 85 0.39
54 43 0.20
55 84 0.38
56 4 0.02
ACGTcount: A:0.23, C:0.25, G:0.17, T:0.35
Consensus pattern (54 bp):
GAACTCACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATA
Found at i:34819307 original size:108 final size:109
Alignment explanation
Indices: 34819118--34819412 Score: 486
Period size: 108 Copynumber: 2.7 Consensus size: 109
34819108 CTTACCATTG
*
34819118 CCATGTCTTGACATGGTCTTACGTGGTATCCTTGCCTTATGAACTCACCAATGCCATGCCTTGGC
1 CCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAACTCACCAATGCCATGCCTTGGC
* *
34819183 ATGATCTTACATGGGACCTTTACCTTATAGTAATTCATCAAT-T
66 ATGGTCTTACATGGGACCTTTACCTTATAGTAACTCATCAATGT
34819226 CCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAACTCACCAATGCCATGCCTTGGC
1 CCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAACTCACCAATGCCATGCCTTGGC
*
34819291 ATGGTCTTACATGGGACCTTTGCCTTATAGTAACTCATCAATGT
66 ATGGTCTTACATGGGACCTTTACCTTATAGTAACTCATCAATGT
* * * * *
34819335 -CATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTATAAAACTTATCAATGCCATGCCTTGG
1 CCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTAT-GAACTCACCAATGCCATGCCTTGG
34819399 CATGGTCTTACATG
65 CATGGTCTTACATG
34819413 ATATCCTTAT
Statistics
Matches: 176, Mismatches: 9, Indels: 3
0.94 0.05 0.02
Matches are distributed among these distances:
108 140 0.80
109 36 0.20
ACGTcount: A:0.23, C:0.25, G:0.17, T:0.35
Consensus pattern (109 bp):
CCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAACTCACCAATGCCATGCCTTGGC
ATGGTCTTACATGGGACCTTTACCTTATAGTAACTCATCAATGT
Found at i:34819452 original size:47 final size:47
Alignment explanation
Indices: 34819399--34819520 Score: 217
Period size: 47 Copynumber: 2.6 Consensus size: 47
34819389 CATGCCTTGG
*
34819399 CATGGTCTTACATGATATCCTTATCTTACCAAATGCCACGTTCCAAA
1 CATGGTCTTACATGGTATCCTTATCTTACCAAATGCCACGTTCCAAA
* *
34819446 CATGGTCTTACATGGTATCCTTGTCTTACCAAATGCCACGTTTCAAA
1 CATGGTCTTACATGGTATCCTTATCTTACCAAATGCCACGTTCCAAA
34819493 CATGGTCTTACATGGTATCCTTATCTTA
1 CATGGTCTTACATGGTATCCTTATCTTA
34819521 GTGCCAATGC
Statistics
Matches: 71, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
47 71 1.00
ACGTcount: A:0.26, C:0.25, G:0.13, T:0.35
Consensus pattern (47 bp):
CATGGTCTTACATGGTATCCTTATCTTACCAAATGCCACGTTCCAAA
Found at i:34824136 original size:20 final size:21
Alignment explanation
Indices: 34824083--34824138 Score: 78
Period size: 21 Copynumber: 2.7 Consensus size: 21
34824073 AAAACAGGGC
*
34824083 ACATGCTCGTGTGGAAGGGTA
1 ACATGCTCGTGTGGTAGGGTA
* *
34824104 ACACGCCCGTGTGGTAGGGTA
1 ACATGCTCGTGTGGTAGGGTA
34824125 A-ATGCTCGTGTGGT
1 ACATGCTCGTGTGGT
34824139 CTTTATGACA
Statistics
Matches: 30, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
20 11 0.37
21 19 0.63
ACGTcount: A:0.20, C:0.18, G:0.38, T:0.25
Consensus pattern (21 bp):
ACATGCTCGTGTGGTAGGGTA
Found at i:34829121 original size:31 final size:31
Alignment explanation
Indices: 34829086--34829159 Score: 94
Period size: 31 Copynumber: 2.4 Consensus size: 31
34829076 TGTTAGACTG
34829086 TGTGGCCTACACAGCCAAACAAACCAAACCA
1 TGTGGCCTACACAGCCAAACAAACCAAACCA
* * * * *
34829117 TGTGGCCTACACGGCCCAACAGACCAGACCG
1 TGTGGCCTACACAGCCAAACAAACCAAACCA
*
34829148 TGTGGCCCACAC
1 TGTGGCCTACAC
34829160 TGCCTAATTA
Statistics
Matches: 37, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
31 37 1.00
ACGTcount: A:0.31, C:0.38, G:0.20, T:0.11
Consensus pattern (31 bp):
TGTGGCCTACACAGCCAAACAAACCAAACCA
Found at i:34834559 original size:46 final size:46
Alignment explanation
Indices: 34834507--34834655 Score: 142
Period size: 46 Copynumber: 3.2 Consensus size: 46
34834497 CCCAAATATG
34834507 GTCTTACACT-GACAATCATCTCGTA-GCCGATGCATGTCCTAGACAT
1 GTCTTACACTAGACAA-CATCTCG-AGGCCGATGCATGTCCTAGACAT
* * * *
34834553 GTCTTACACTAGCCTACGTCTCGAGGCCGATGCATGTCCTGGACAT
1 GTCTTACACTAGACAACATCTCGAGGCCGATGCATGTCCTAGACAT
* ** * * *
34834599 GTCTTACACTAG-CATTCGCCTCGATGCCGACGCCATGTCCCAGACAT
1 GTCTTACACTAGACA-ACATCTCGAGGCCGATG-CATGTCCTAGACAT
34834646 GGTCTTACAC
1 -GTCTTACAC
34834656 AGGCTCTCAT
Statistics
Matches: 87, Mismatches: 11, Indels: 8
0.82 0.10 0.08
Matches are distributed among these distances:
45 2 0.02
46 61 0.70
47 15 0.17
48 9 0.10
ACGTcount: A:0.22, C:0.32, G:0.20, T:0.26
Consensus pattern (46 bp):
GTCTTACACTAGACAACATCTCGAGGCCGATGCATGTCCTAGACAT
Found at i:34842677 original size:25 final size:26
Alignment explanation
Indices: 34842629--34842677 Score: 73
Period size: 25 Copynumber: 1.9 Consensus size: 26
34842619 CTTTTCTTTT
* *
34842629 CTTTTCATTTTTAGATTAGGTTTTCC
1 CTTTTCATTTTTAGACTAGATTTTCC
34842655 CTTTTC-TTTTTAGACTAGATTTT
1 CTTTTCATTTTTAGACTAGATTTT
34842678 ATTTTTGTTG
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 15 0.71
26 6 0.29
ACGTcount: A:0.16, C:0.14, G:0.10, T:0.59
Consensus pattern (26 bp):
CTTTTCATTTTTAGACTAGATTTTCC
Found at i:34842780 original size:43 final size:43
Alignment explanation
Indices: 34842719--34842805 Score: 174
Period size: 43 Copynumber: 2.0 Consensus size: 43
34842709 TTTTTAAATG
34842719 AAGATGGATCATGTTATTGGGTTCCATTGGTTTTCACATCTAA
1 AAGATGGATCATGTTATTGGGTTCCATTGGTTTTCACATCTAA
34842762 AAGATGGATCATGTTATTGGGTTCCATTGGTTTTCACATCTAA
1 AAGATGGATCATGTTATTGGGTTCCATTGGTTTTCACATCTAA
34842805 A
1 A
34842806 CAAGCATTTC
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 44 1.00
ACGTcount: A:0.26, C:0.14, G:0.21, T:0.39
Consensus pattern (43 bp):
AAGATGGATCATGTTATTGGGTTCCATTGGTTTTCACATCTAA
Found at i:34856575 original size:58 final size:58
Alignment explanation
Indices: 34856507--34856634 Score: 238
Period size: 58 Copynumber: 2.2 Consensus size: 58
34856497 GACTTTGATT
*
34856507 AGGCTTTGTGCCTAGCAGGCTTAGTGCCGGTGAATAAATCTCAGACCTTGGGTCTAGC
1 AGGCTTTGTGCCTAGCAGGCTTAGTGCCGGTGAATAAATATCAGACCTTGGGTCTAGC
*
34856565 AGGCTTTGTGCCTAGCAGGCTTAGTGCCGGTGAATAAATATCAGACCTTGGGTCTAGT
1 AGGCTTTGTGCCTAGCAGGCTTAGTGCCGGTGAATAAATATCAGACCTTGGGTCTAGC
34856623 AGGCTTTGTGCC
1 AGGCTTTGTGCC
34856635 GGTGTGTAAT
Statistics
Matches: 68, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
58 68 1.00
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (58 bp):
AGGCTTTGTGCCTAGCAGGCTTAGTGCCGGTGAATAAATATCAGACCTTGGGTCTAGC
Found at i:34856581 original size:16 final size:16
Alignment explanation
Indices: 34856560--34856592 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
34856550 GACCTTGGGT
*
34856560 CTAGCAGGCTTTGTGC
1 CTAGCAGGCTTAGTGC
34856576 CTAGCAGGCTTAGTGC
1 CTAGCAGGCTTAGTGC
34856592 C
1 C
34856593 GGTGAATAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.15, C:0.27, G:0.30, T:0.27
Consensus pattern (16 bp):
CTAGCAGGCTTAGTGC
Found at i:34865961 original size:35 final size:35
Alignment explanation
Indices: 34865922--34866009 Score: 99
Period size: 35 Copynumber: 2.5 Consensus size: 35
34865912 ATTTGATTAC
* ** *
34865922 ATGTGAGTTTATATTGAATTTGTGTATTTGGTCAT
1 ATGTGAGTTTATATTGAATGTGCATATTTGGCCAT
*
34865957 ATGTGAAG-TTATTTTGAATGTGCATATTTGGCCAT
1 ATGTG-AGTTTATATTGAATGTGCATATTTGGCCAT
34865992 ATGTGA-TGTTATATTGAA
1 ATGTGAGT-TTATATTGAA
34866010 ATTGAACTAT
Statistics
Matches: 44, Mismatches: 6, Indels: 6
0.79 0.11 0.11
Matches are distributed among these distances:
34 1 0.02
35 41 0.93
36 2 0.05
ACGTcount: A:0.26, C:0.05, G:0.23, T:0.47
Consensus pattern (35 bp):
ATGTGAGTTTATATTGAATGTGCATATTTGGCCAT
Found at i:34871003 original size:27 final size:27
Alignment explanation
Indices: 34870972--34871025 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
34870962 TGTCATGTGA
*
34870972 AATTGAATGGCAAATTATTATCACATG
1 AATTGAATGGCAAATTACTATCACATG
** *
34870999 AATTGAATGTTAAATTACTATTACATG
1 AATTGAATGGCAAATTACTATCACATG
34871026 GGTTGTATGA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.41, C:0.09, G:0.13, T:0.37
Consensus pattern (27 bp):
AATTGAATGGCAAATTACTATCACATG
Found at i:34871351 original size:49 final size:50
Alignment explanation
Indices: 34871274--34871503 Score: 257
Period size: 49 Copynumber: 4.6 Consensus size: 50
34871264 TATTGTGAGG
* * *
34871274 TCACGTGTGTAGTACTAAGTGCAAGCTACTACGTGTACCGGATAATT-GG
1 TCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTAGA
* * * * * *
34871323 TCGCATGTGTAGTACTAAGTGCAAGCTACTATGCGTACCCGATAACTTCGA
1 TCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAA-TTAGA
* * * * **
34871374 TCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTATCAGATGGTTAGA
1 TCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTAGA
* * * *
34871424 TCACATGTTTAGTACTAAGTGCAGGCTACTACGTGTAACGAATAATT-GG
1 TCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTAGA
*
34871473 TCGCATGTGTAGTACTAAGTGCAGGCTACTA
1 TCACATGTGTAGTACTAAGTGCAGGCTACTA
34871504 TGCGTACCAG
Statistics
Matches: 151, Mismatches: 28, Indels: 4
0.83 0.15 0.02
Matches are distributed among these distances:
49 70 0.46
50 45 0.30
51 36 0.24
ACGTcount: A:0.28, C:0.19, G:0.24, T:0.29
Consensus pattern (50 bp):
TCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTAGA
Found at i:34871515 original size:99 final size:100
Alignment explanation
Indices: 34871274--34871516 Score: 276
Period size: 100 Copynumber: 2.4 Consensus size: 100
34871264 TATTGTGAGG
* * * * *
34871274 TCACGTGTGTAGTACTAAGTGCAAGCTACTACGTGTACCGGATAATTGGTCGCATGTGTAGTACT
1 TCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGATCACATGTGTAGTACT
* *
34871339 AAGTGCAAGCTACTATGCGTACCCGATAACTTCGA
66 AAGTGCAAGCTACTACGCGTACACGATAACTTCGA
* * * ** *
34871374 TCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTATCAGATGGTTAGATCACATGTTTAGTAC
1 TCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT-GATCACATGTGTAGTAC
* * *
34871439 TAAGTGCAGGCTACTACGTGTA-ACGAATAA-TT-GG
65 TAAGTGCAAGCTACTACGCGTACACG-ATAACTTCGA
* * *
34871473 TCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATA
1 TCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATA
34871517 GCCTTGTCTA
Statistics
Matches: 120, Mismatches: 21, Indels: 5
0.82 0.14 0.03
Matches are distributed among these distances:
99 38 0.32
100 45 0.38
101 37 0.31
ACGTcount: A:0.28, C:0.19, G:0.24, T:0.29
Consensus pattern (100 bp):
TCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGATCACATGTGTAGTACT
AAGTGCAAGCTACTACGCGTACACGATAACTTCGA
Found at i:34872661 original size:78 final size:79
Alignment explanation
Indices: 34872507--34872668 Score: 281
Period size: 78 Copynumber: 2.0 Consensus size: 79
34872497 TTAATTCAAA
34872507 TATTAGAAATATCAAGTGAATGGCATGTATAAGAAGAAGTTGGTTTGTGATATGTATTATTATTA
1 TATTAGAAATATCAAGTGAATGGCATGTAT-A-AAGAAGTTGGTTTGTGATATGTATTATTATTA
*
34872572 TGACTTTGACCATGCG
64 TGACTTTGACCATACG
*
34872588 TATTAGAAATATCAAGTGAGTGGCATGTAT-AAGAAGTTGGTTTGTGATATGTATTATTATTATG
1 TATTAGAAATATCAAGTGAATGGCATGTATAAAGAAGTTGGTTTGTGATATGTATTATTATTATG
34872652 ACTTTGACCATACG
66 ACTTTGACCATACG
34872666 TAT
1 TAT
34872669 CAGTTTGCAT
Statistics
Matches: 79, Mismatches: 2, Indels: 3
0.94 0.02 0.04
Matches are distributed among these distances:
78 50 0.63
81 29 0.37
ACGTcount: A:0.33, C:0.07, G:0.22, T:0.38
Consensus pattern (79 bp):
TATTAGAAATATCAAGTGAATGGCATGTATAAAGAAGTTGGTTTGTGATATGTATTATTATTATG
ACTTTGACCATACG
Found at i:34877476 original size:49 final size:50
Alignment explanation
Indices: 34877301--34877484 Score: 185
Period size: 50 Copynumber: 3.7 Consensus size: 50
34877291 ATCTATTGTG
* * * *
34877301 AGGTCACATGTGTAGTACTAAGTGCAAGCTACTATACGTACCCG-ATAACTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACATGTA-ACGAATAA-TT
* * ** * * * **
34877352 CGATCATGTGTGTAGTACTAAGTGCTGGCTACTACGTGTATC-AGATGGTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACATGTAACGA-ATAATT
*
34877402 AGGTTACATGTGTAGTACTAAGTGCAGGCTACTACATGTAACGAATAATT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACATGTAACGAATAATT
*
34877452 -GGTCGCATGTGTAGTACTAAGTGCAGGCTACTA
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTA
34877485 TGCGTACCAG
Statistics
Matches: 106, Mismatches: 24, Indels: 8
0.77 0.17 0.06
Matches are distributed among these distances:
49 31 0.29
50 41 0.39
51 34 0.32
ACGTcount: A:0.28, C:0.17, G:0.24, T:0.30
Consensus pattern (50 bp):
AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACATGTAACGAATAATT
Found at i:34883424 original size:26 final size:26
Alignment explanation
Indices: 34883388--34883441 Score: 108
Period size: 26 Copynumber: 2.1 Consensus size: 26
34883378 AGGAAAGAAA
34883388 GAAAGAATATTGGAATTTGTTGGTAT
1 GAAAGAATATTGGAATTTGTTGGTAT
34883414 GAAAGAATATTGGAATTTGTTGGTAT
1 GAAAGAATATTGGAATTTGTTGGTAT
34883440 GA
1 GA
34883442 TTTCCAAATG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.35, C:0.00, G:0.28, T:0.37
Consensus pattern (26 bp):
GAAAGAATATTGGAATTTGTTGGTAT
Found at i:34888630 original size:17 final size:19
Alignment explanation
Indices: 34888593--34888630 Score: 53
Period size: 18 Copynumber: 2.1 Consensus size: 19
34888583 ATCTTTCATC
*
34888593 AATAAGTGTCTTTCTAAAT
1 AATAAGTGTCTTTCAAAAT
34888612 AATAA-TGTCTTT-AAAAT
1 AATAAGTGTCTTTCAAAAT
34888629 AA
1 AA
34888631 ACACATAATT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
17 6 0.33
18 7 0.39
19 5 0.28
ACGTcount: A:0.45, C:0.08, G:0.08, T:0.39
Consensus pattern (19 bp):
AATAAGTGTCTTTCAAAAT
Found at i:34890449 original size:17 final size:18
Alignment explanation
Indices: 34890427--34890460 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
34890417 AAATTCAATA
34890427 TATATATATATA-TATTG
1 TATATATATATACTATTG
*
34890444 TATATATTTATACTATT
1 TATATATATATACTATT
34890461 TATTAAGCCT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.38, C:0.03, G:0.03, T:0.56
Consensus pattern (18 bp):
TATATATATATACTATTG
Found at i:34893308 original size:27 final size:27
Alignment explanation
Indices: 34893270--34893322 Score: 106
Period size: 27 Copynumber: 2.0 Consensus size: 27
34893260 GTAGGGGGTC
34893270 AGTCTCTTCCTATAATGGAAATTGAAT
1 AGTCTCTTCCTATAATGGAAATTGAAT
34893297 AGTCTCTTCCTATAATGGAAATTGAA
1 AGTCTCTTCCTATAATGGAAATTGAA
34893323 CCTTTAAAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.34, C:0.15, G:0.15, T:0.36
Consensus pattern (27 bp):
AGTCTCTTCCTATAATGGAAATTGAAT
Found at i:34893706 original size:17 final size:17
Alignment explanation
Indices: 34893684--34893732 Score: 55
Period size: 17 Copynumber: 2.9 Consensus size: 17
34893674 TTATAATATC
34893684 ATTAATTACTTTAAATA
1 ATTAATTACTTTAAATA
**
34893701 ATTAA-TACTATTATCTA
1 ATTAATTACT-TTAAATA
*
34893718 ATTAGTTACTTTAAA
1 ATTAATTACTTTAAA
34893733 ATCATATTTT
Statistics
Matches: 25, Mismatches: 5, Indels: 4
0.74 0.15 0.12
Matches are distributed among these distances:
16 4 0.16
17 17 0.68
18 4 0.16
ACGTcount: A:0.43, C:0.08, G:0.02, T:0.47
Consensus pattern (17 bp):
ATTAATTACTTTAAATA
Found at i:34895347 original size:16 final size:17
Alignment explanation
Indices: 34895318--34895350 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
34895308 TATCACACAT
*
34895318 TTTTATTTTCGGGTTTA
1 TTTTATTTTAGGGTTTA
34895335 TTTT-TTTTAGGGTTTA
1 TTTTATTTTAGGGTTTA
34895351 AATTTGGTAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 11 0.73
17 4 0.27
ACGTcount: A:0.12, C:0.03, G:0.18, T:0.67
Consensus pattern (17 bp):
TTTTATTTTAGGGTTTA
Found at i:34900626 original size:20 final size:20
Alignment explanation
Indices: 34900601--34900664 Score: 83
Period size: 20 Copynumber: 3.1 Consensus size: 20
34900591 CTTGTACAGG
*
34900601 TTTGCACTTTGGTGCCTCTA
1 TTTGCACTTCGGTGCCTCTA
*
34900621 TTTGCACTTCGATGCCTCTGTA
1 TTTGCACTTCGGTGCCTC--TA
*
34900643 TTTGCACTACGGTGCCTCTA
1 TTTGCACTTCGGTGCCTCTA
34900663 TT
1 TT
34900665 AGCATTTCGA
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
20 20 0.53
22 18 0.47
ACGTcount: A:0.12, C:0.27, G:0.19, T:0.42
Consensus pattern (20 bp):
TTTGCACTTCGGTGCCTCTA
Found at i:34900647 original size:22 final size:21
Alignment explanation
Indices: 34900601--34900661 Score: 79
Period size: 22 Copynumber: 2.9 Consensus size: 21
34900591 CTTGTACAGG
*
34900601 TTTGCACTTTGGTGCCTC-TA
1 TTTGCACTTCGGTGCCTCTTA
*
34900621 TTTGCACTTCGATGCCTCTGTA
1 TTTGCACTTCGGTGCCTCT-TA
*
34900643 TTTGCACTACGGTGCCTCT
1 TTTGCACTTCGGTGCCTCT
34900662 ATTAGCATTT
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
20 16 0.46
22 19 0.54
ACGTcount: A:0.11, C:0.28, G:0.20, T:0.41
Consensus pattern (21 bp):
TTTGCACTTCGGTGCCTCTTA
Found at i:34901488 original size:74 final size:74
Alignment explanation
Indices: 34901367--34901511 Score: 290
Period size: 74 Copynumber: 2.0 Consensus size: 74
34901357 CATACGAGCT
34901367 TACTAAGCATTAGTTCTTACACAGTTATTTTTCTCTCTTTTATAGATCATTGGATGCTCGATCGA
1 TACTAAGCATTAGTTCTTACACAGTTATTTTTCTCTCTTTTATAGATCATTGGATGCTCGATCGA
34901432 TTGGAAGCA
66 TTGGAAGCA
34901441 TACTAAGCATTAGTTCTTACACAGTTATTTTTCTCTCTTTTATAGATCATTGGATGCTCGATCGA
1 TACTAAGCATTAGTTCTTACACAGTTATTTTTCTCTCTTTTATAGATCATTGGATGCTCGATCGA
34901506 TTGGAA
66 TTGGAA
34901512 TCACGTAAGA
Statistics
Matches: 71, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
74 71 1.00
ACGTcount: A:0.26, C:0.17, G:0.16, T:0.41
Consensus pattern (74 bp):
TACTAAGCATTAGTTCTTACACAGTTATTTTTCTCTCTTTTATAGATCATTGGATGCTCGATCGA
TTGGAAGCA
Found at i:34903056 original size:30 final size:30
Alignment explanation
Indices: 34903021--34903077 Score: 82
Period size: 30 Copynumber: 1.9 Consensus size: 30
34903011 AGGCACTTCT
34903021 ACACGGGT-GATCCACACGT-CCGTGTGTGAC
1 ACACGGGTAGA-CCACAC-TCCCGTGTGTGAC
34903051 ACACGGGTAGACCACACTCCCGTGTGT
1 ACACGGGTAGACCACACTCCCGTGTGT
34903078 CATGCCCGTG
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
29 1 0.04
30 22 0.88
31 2 0.08
ACGTcount: A:0.21, C:0.32, G:0.28, T:0.19
Consensus pattern (30 bp):
ACACGGGTAGACCACACTCCCGTGTGTGAC
Found at i:34909396 original size:24 final size:23
Alignment explanation
Indices: 34909352--34909403 Score: 61
Period size: 24 Copynumber: 2.2 Consensus size: 23
34909342 TTGTCCCTTA
*
34909352 TATTTTCTTTTCTTTTATTTCAT
1 TATTTTCATTTCTTTTATTTCAT
*
34909375 TATTATTCATTTC-TTTATTTTCTT
1 TATT-TTCATTTCTTTTA-TTTCAT
34909399 TATTT
1 TATTT
34909404 CTTTGATTAG
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
23 9 0.36
24 16 0.64
ACGTcount: A:0.15, C:0.12, G:0.00, T:0.73
Consensus pattern (23 bp):
TATTTTCATTTCTTTTATTTCAT
Found at i:34914435 original size:11 final size:11
Alignment explanation
Indices: 34914419--34914443 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
34914409 TTTCAACACT
34914419 TCAAATTTACA
1 TCAAATTTACA
34914430 TCAAATTTACA
1 TCAAATTTACA
34914441 TCA
1 TCA
34914444 TTCAATCTCA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.44, C:0.20, G:0.00, T:0.36
Consensus pattern (11 bp):
TCAAATTTACA
Found at i:34915267 original size:44 final size:42
Alignment explanation
Indices: 34915129--34915285 Score: 156
Period size: 43 Copynumber: 3.7 Consensus size: 42
34915119 AACTCGTACA
* * *
34915129 ATGCCAACGTCCTAGACGTGGTCTTACATGT-AATCAAATATCG
1 ATGCCAATGTCCCAGACATGGTCTTACATGTAAATC-AA-ATCG
* * * * *
34915172 ATGCCACTGTCTCAGATAGGGTCTTACACG-AAATCAAATACG
1 ATGCCAATGTCCCAGACATGGTCTTACATGTAAATCAAAT-CG
* *
34915214 ATGCTAATGTCCCAGACATGGTCTTACGTGTAAATCATAAGTCG
1 ATGCCAATGTCCCAGACATGGTCTTACATGTAAATCA-AA-TCG
*
34915258 ATGCCAATGTCCCATACATGGTCTTACA
1 ATGCCAATGTCCCAGACATGGTCTTACA
34915286 CGAAAAAGCA
Statistics
Matches: 91, Mismatches: 18, Indels: 9
0.77 0.15 0.08
Matches are distributed among these distances:
41 2 0.02
42 27 0.30
43 32 0.35
44 29 0.32
45 1 0.01
ACGTcount: A:0.31, C:0.24, G:0.18, T:0.27
Consensus pattern (42 bp):
ATGCCAATGTCCCAGACATGGTCTTACATGTAAATCAAATCG
Found at i:34918461 original size:18 final size:17
Alignment explanation
Indices: 34918402--34918462 Score: 52
Period size: 17 Copynumber: 3.5 Consensus size: 17
34918392 GTATCTTGGT
34918402 TGAGCTCGCATG-TTTGA
1 TGAGCTCGCA-GCTTTGA
* * *
34918419 TGAGCTTGCAACTTTGG
1 TGAGCTCGCAGCTTTGA
*
34918436 TTATGCTCGCAGCTTTCGA
1 TGA-GCTCGCAGCTTT-GA
34918455 TGAGCTCG
1 TGAGCTCG
34918463 TAGTTGTGTT
Statistics
Matches: 33, Mismatches: 8, Indels: 5
0.72 0.17 0.11
Matches are distributed among these distances:
17 15 0.45
18 15 0.45
19 3 0.09
ACGTcount: A:0.16, C:0.21, G:0.28, T:0.34
Consensus pattern (17 bp):
TGAGCTCGCAGCTTTGA
Found at i:34918510 original size:18 final size:18
Alignment explanation
Indices: 34918397--34918524 Score: 73
Period size: 18 Copynumber: 7.2 Consensus size: 18
34918387 GGATCGTATC
* **
34918397 TTGGTTGAGCTCGCATGT
1 TTGGATGAGCTCGCAACT
*
34918415 TT-GATGAGCTTGCAACT
1 TTGGATGAGCTCGCAACT
* *
34918432 TTGG-TTATGCTCGCAGCT
1 TTGGATGA-GCTCGCAACT
* * *
34918450 TTCGATGAGCTCG-TAGT
1 TTGGATGAGCTCGCAACT
** * *
34918467 TGTGTTTGATCTCACAACT
1 T-TGGATGAGCTCGCAACT
* *
34918486 CTGGATGAGCTCGCAATT
1 TTGGATGAGCTCGCAACT
*
34918504 TTGGATGGGCTCGCAACT
1 TTGGATGAGCTCGCAACT
34918522 TTG
1 TTG
34918525 CGACCTGAGT
Statistics
Matches: 77, Mismatches: 28, Indels: 10
0.67 0.24 0.09
Matches are distributed among these distances:
17 17 0.22
18 56 0.73
19 4 0.05
ACGTcount: A:0.17, C:0.20, G:0.27, T:0.36
Consensus pattern (18 bp):
TTGGATGAGCTCGCAACT
Found at i:34920147 original size:24 final size:27
Alignment explanation
Indices: 34920101--34920149 Score: 77
Period size: 24 Copynumber: 1.9 Consensus size: 27
34920091 CAAGGTTAGT
34920101 TTGTATGTTAAATAAGCTTTAATATAA
1 TTGTATGTTAAATAAGCTTTAATATAA
34920128 TTGTAT-TTAAAT-A-CTTTAATAT
1 TTGTATGTTAAATAAGCTTTAATAT
34920150 TGCATGAACT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
24 9 0.41
25 1 0.05
26 6 0.27
27 6 0.27
ACGTcount: A:0.39, C:0.04, G:0.08, T:0.49
Consensus pattern (27 bp):
TTGTATGTTAAATAAGCTTTAATATAA
Found at i:34930598 original size:43 final size:44
Alignment explanation
Indices: 34930538--34930620 Score: 132
Period size: 43 Copynumber: 1.9 Consensus size: 44
34930528 TCTCAATTCA
*
34930538 TCATTTCATATTTCATTTCTCATCTTTGCCATTTCAATATTTTC
1 TCATCTCATATTTCATTTCTCATCTTTGCCATTTCAATATTTTC
* *
34930582 TCATCTCATA-TTCATTTTTCATCTTTTCCATTTCAATAT
1 TCATCTCATATTTCATTTCTCATCTTTGCCATTTCAATAT
34930621 CAATCATATA
Statistics
Matches: 36, Mismatches: 3, Indels: 1
0.90 0.08 0.03
Matches are distributed among these distances:
43 27 0.75
44 9 0.25
ACGTcount: A:0.22, C:0.23, G:0.01, T:0.54
Consensus pattern (44 bp):
TCATCTCATATTTCATTTCTCATCTTTGCCATTTCAATATTTTC
Found at i:34947695 original size:71 final size:71
Alignment explanation
Indices: 34947614--34947757 Score: 288
Period size: 71 Copynumber: 2.0 Consensus size: 71
34947604 AACCTAATCC
34947614 TCAAGAATATTTATATTTATCCTTTTAACATGCAATAAATTTCAATGCTTTCTTATCTTAATCAT
1 TCAAGAATATTTATATTTATCCTTTTAACATGCAATAAATTTCAATGCTTTCTTATCTTAATCAT
34947679 GCATGT
66 GCATGT
34947685 TCAAGAATATTTATATTTATCCTTTTAACATGCAATAAATTTCAATGCTTTCTTATCTTAATCAT
1 TCAAGAATATTTATATTTATCCTTTTAACATGCAATAAATTTCAATGCTTTCTTATCTTAATCAT
34947750 GCATGT
66 GCATGT
34947756 TC
1 TC
34947758 GATAAACGTA
Statistics
Matches: 73, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 73 1.00
ACGTcount: A:0.32, C:0.16, G:0.07, T:0.45
Consensus pattern (71 bp):
TCAAGAATATTTATATTTATCCTTTTAACATGCAATAAATTTCAATGCTTTCTTATCTTAATCAT
GCATGT
Found at i:34948306 original size:13 final size:13
Alignment explanation
Indices: 34948288--34948312 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
34948278 TCTCCCTAAC
34948288 GACGGTCCTACGT
1 GACGGTCCTACGT
34948301 GACGGTCCTACG
1 GACGGTCCTACG
34948313 GGACAGTCCA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.32, G:0.32, T:0.20
Consensus pattern (13 bp):
GACGGTCCTACGT
Found at i:34955618 original size:22 final size:22
Alignment explanation
Indices: 34955593--34955637 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
34955583 TTTGGTGTAG
34955593 TAGATTAAACTAGTTTTTGCAC
1 TAGATTAAACTAGTTTTTGCAC
34955615 TAGATTAAACTAGTTTTTGCAC
1 TAGATTAAACTAGTTTTTGCAC
34955637 T
1 T
34955638 TTAGGAGCTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.31, C:0.13, G:0.13, T:0.42
Consensus pattern (22 bp):
TAGATTAAACTAGTTTTTGCAC
Found at i:34957768 original size:47 final size:46
Alignment explanation
Indices: 34957657--34957781 Score: 159
Period size: 45 Copynumber: 2.7 Consensus size: 46
34957647 GGGTAAGGTA
**
34957657 CCGATGCCATGTCCCAGACATGGTCTTACACTGACACATCTTGTAG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGACACATCTTCAAG
*
34957703 CCGATG-CATGTCCCAGACAT-GTCTTACA-TTAGCAC-TCGTCTCAATG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGA-CACATC-T-TCAA-G
34957749 CCGATGCCATGTCCCAGACATGGTCTTACACTG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTG
34957782 GCTCTCATGA
Statistics
Matches: 68, Mismatches: 4, Indels: 11
0.82 0.05 0.13
Matches are distributed among these distances:
43 4 0.06
44 12 0.18
45 16 0.24
46 13 0.19
47 14 0.21
48 8 0.12
49 1 0.01
ACGTcount: A:0.23, C:0.31, G:0.19, T:0.26
Consensus pattern (46 bp):
CCGATGCCATGTCCCAGACATGGTCTTACACTGACACATCTTCAAG
Found at i:34962420 original size:14 final size:14
Alignment explanation
Indices: 34962401--34962428 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
34962391 TAGAGACTTC
34962401 AATGGTATTTAACA
1 AATGGTATTTAACA
34962415 AATGGTATTTAACA
1 AATGGTATTTAACA
34962429 TGGCCTAATT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.43, C:0.07, G:0.14, T:0.36
Consensus pattern (14 bp):
AATGGTATTTAACA
Found at i:34963330 original size:54 final size:54
Alignment explanation
Indices: 34963271--34963403 Score: 203
Period size: 54 Copynumber: 2.5 Consensus size: 54
34963261 TCTTACGGCA
** * *
34963271 GGATTACCAGTCTAGGCTAAATTTCCCGTAGTAGTAACTTATAGAGCAATGTAG
1 GGATTACCAGTCTAGGCTAAATCCCCCATAGTAGTAACTCATAGAGCAATGTAG
* *
34963325 GGATTACCAGTCTAGGCTAAATCCCCCATAGTAGTAACTCATATAGCAATGTCG
1 GGATTACCAGTCTAGGCTAAATCCCCCATAGTAGTAACTCATAGAGCAATGTAG
*
34963379 GGATTACTAGTCTAGGCTAAATCCC
1 GGATTACCAGTCTAGGCTAAATCCC
34963404 TCTTAATGAT
Statistics
Matches: 72, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
54 72 1.00
ACGTcount: A:0.31, C:0.21, G:0.20, T:0.28
Consensus pattern (54 bp):
GGATTACCAGTCTAGGCTAAATCCCCCATAGTAGTAACTCATAGAGCAATGTAG
Found at i:34966622 original size:137 final size:135
Alignment explanation
Indices: 34966298--34966580 Score: 370
Period size: 137 Copynumber: 2.1 Consensus size: 135
34966288 GAGAACATAG
* * * * * **
34966298 ATATAATTAATATGTGAATTTGATTCATATA-AAATATTAATTGTATAGATTTGACTGAATTTAT
1 ATATAATTATTATATGAATTTGATT-A-ATACAAA-ATTAATTGCATATATTTTACCAAATTTAT
* ** *
34966362 TAATATAAATAATTATATTAATTAATTTCGGTCAAAATATAAAGACATGAAAATTAATATTCTTT
63 TAATATAAACAATTATATTAATTAATTTCAATCAAAATATAAAGACATGAAAATTAATATTATTT
34966427 TGGAAAGA
128 TGGAAAGA
* *
34966435 ATATAATTATTATATGAATTTGATTCATACAAAATTTTAATTGTATATATTTTACCAAATTTATT
1 ATATAATTATTATATGAATTTGATTAATACAAAA--TTAATTGCATATATTTTACCAAATTTATT
* *
34966500 AATATAAACAATTATATTAATTAATTTCAATCAAAATATAAAAGATATGGAAATTAATATTATTT
64 AATATAAACAATTATATTAATTAATTTCAATCAAAATAT-AAAGACATGAAAATTAATATTATTT
34966565 TGGAAAGA
128 TGGAAAGA
34966573 ATATAATT
1 ATATAATT
34966581 TCTTTTTTTA
Statistics
Matches: 129, Mismatches: 13, Indels: 7
0.87 0.09 0.05
Matches are distributed among these distances:
135 4 0.03
136 3 0.02
137 84 0.65
138 38 0.29
ACGTcount: A:0.46, C:0.05, G:0.08, T:0.42
Consensus pattern (135 bp):
ATATAATTATTATATGAATTTGATTAATACAAAATTAATTGCATATATTTTACCAAATTTATTAA
TATAAACAATTATATTAATTAATTTCAATCAAAATATAAAGACATGAAAATTAATATTATTTTGG
AAAGA
Found at i:34966680 original size:75 final size:75
Alignment explanation
Indices: 34966595--34966768 Score: 296
Period size: 75 Copynumber: 2.3 Consensus size: 75
34966585 TTTTTAACTT
* *
34966595 TCTATTAATAAGGGAATAATCCTATATTCTTTTGGAAAGAATATAATTCTTTTTTCTAA-CTTTC
1 TCTATTAATAAGGGAATAATCCTATATTATTTTGGAAAGAATATAATTCATTTTTCTAACCTTTC
34966659 TATTTGCCTTC
66 -ATTTGCCTTC
34966670 TCTATTAATAAGGGAATAATCCTATATTATTTTGGAAAGAATATAATTCATTTTTCTAACCTTTC
1 TCTATTAATAAGGGAATAATCCTATATTATTTTGGAAAGAATATAATTCATTTTTCTAACCTTTC
34966735 ATTTGCCTTC
66 ATTTGCCTTC
* *
34966745 TCTATTAATTAGGGTATAATCCTA
1 TCTATTAATAAGGGAATAATCCTA
34966769 ATTTTTCTTT
Statistics
Matches: 94, Mismatches: 4, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
75 89 0.95
76 5 0.05
ACGTcount: A:0.31, C:0.14, G:0.10, T:0.45
Consensus pattern (75 bp):
TCTATTAATAAGGGAATAATCCTATATTATTTTGGAAAGAATATAATTCATTTTTCTAACCTTTC
ATTTGCCTTC
Found at i:34989147 original size:42 final size:42
Alignment explanation
Indices: 34989101--34989185 Score: 170
Period size: 42 Copynumber: 2.0 Consensus size: 42
34989091 TTATTTTTAG
34989101 TATATTTTATTAAAACCTTTCTTTTAATTCTTCATTGTAATA
1 TATATTTTATTAAAACCTTTCTTTTAATTCTTCATTGTAATA
34989143 TATATTTTATTAAAACCTTTCTTTTAATTCTTCATTGTAATA
1 TATATTTTATTAAAACCTTTCTTTTAATTCTTCATTGTAATA
34989185 T
1 T
34989186 CCCGAATGAA
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 43 1.00
ACGTcount: A:0.31, C:0.12, G:0.02, T:0.55
Consensus pattern (42 bp):
TATATTTTATTAAAACCTTTCTTTTAATTCTTCATTGTAATA
Found at i:34990055 original size:46 final size:45
Alignment explanation
Indices: 34990005--34990175 Score: 186
Period size: 46 Copynumber: 3.7 Consensus size: 45
34989995 TGAGCATCCA
*
34990005 AACTCGTTGAGTTGAGTCCGAGTTCACTTACGGATGCGAATGTTCG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTA-GGATGCGAATGTCCG
* * *
34990051 AACTCGTTGAGTTGAGTCCGAGTTC-GTGA-GATG-TAACTAGGCATCCG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTAGGATGCGAA-T--G--TCCG
* *
34990098 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTA-GGATGCGAATGTCCG
* *
34990144 AGCTCGTTGAGTTGAGTCTGAGTTCACTTAGG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTAGG
34990176 GGCGGGTTAA
Statistics
Matches: 105, Mismatches: 11, Indels: 19
0.78 0.08 0.14
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 5 0.05
46 56 0.53
47 28 0.27
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.29
Consensus pattern (45 bp):
AACTCGTTGAGTTGAGTCCGAGTTCACTTAGGATGCGAATGTCCG
Found at i:34990157 original size:93 final size:93
Alignment explanation
Indices: 34989998--34990168 Score: 279
Period size: 93 Copynumber: 1.8 Consensus size: 93
34989988 GGATGGTTGA
* **
34989998 GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTACGGATGCGAATGTTCGAACTCGTTGAGT
1 GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTACGGATGCGAACGCCCGAACTCGTTGAGT
34990063 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* * *
34990091 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTACGGATGCGAACGCCCGAACTCGTTGAGT
*
34990156 TGAGTCTGAGTTC
66 TGAGTCCGAGTTC
34990169 ACTTAGGGGC
Statistics
Matches: 71, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.29
Consensus pattern (93 bp):
GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTACGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:35002006 original size:90 final size:90
Alignment explanation
Indices: 35001848--35002017 Score: 225
Period size: 90 Copynumber: 1.9 Consensus size: 90
35001838 TTGGGGTGAT
* * * * *
35001848 GAGATCCCGTATAAGACCATATCCAGGATATGTCATTAGCATCAGTATGTGTTATCATGTAAGAC
1 GAGATCCCATATAAGACCATATCCAGGACATGGCATTAGCATCAGTATGTGATACCATGTAAGAC
35001913 CATATCTGGGATATGAATTTAATAG
66 CATATCTGGGATATGAATTTAATAG
* * ** * *
35001938 GAGATCCCATGTAAGACCATGTCTGGGACATGGCATTAGCATCGAGT-TGTGATCCCATGTAAGG
1 GAGATCCCATATAAGACCATATCCAGGACATGGCATTAGCATC-AGTATGTGATACCATGTAAGA
35002002 CCATATCTGGGATATG
65 CCATATCTGGGATATG
35002018 GCATTGGTAT
Statistics
Matches: 68, Mismatches: 11, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
90 65 0.96
91 3 0.04
ACGTcount: A:0.30, C:0.18, G:0.24, T:0.29
Consensus pattern (90 bp):
GAGATCCCATATAAGACCATATCCAGGACATGGCATTAGCATCAGTATGTGATACCATGTAAGAC
CATATCTGGGATATGAATTTAATAG
Found at i:35004794 original size:27 final size:27
Alignment explanation
Indices: 35004765--35004892 Score: 161
Period size: 27 Copynumber: 4.7 Consensus size: 27
35004755 TTACCCTACA
* **
35004765 GGGGTATTTTGATAATTTTACAAATAA
1 GGGGTATTTCGATAATTTTACAAATCG
*
35004792 GGGGTATTT-TAGTAATTTTACAAATCG
1 GGGGTATTTCGA-TAATTTTACAAATCG
*
35004819 GGGGTATTTCAATAATTTTACAAATCG
1 GGGGTATTTCGATAATTTTACAAATCG
*
35004846 GGGGTATTTCGGTAATTTTACAAA-CTG
1 GGGGTATTTCGATAATTTTACAAATC-G
*
35004873 GGGGTATTTCGGTAATTTTA
1 GGGGTATTTCGATAATTTTA
35004893 AACAGTTTGG
Statistics
Matches: 92, Mismatches: 6, Indels: 6
0.88 0.06 0.06
Matches are distributed among these distances:
26 2 0.02
27 89 0.97
28 1 0.01
ACGTcount: A:0.30, C:0.08, G:0.23, T:0.40
Consensus pattern (27 bp):
GGGGTATTTCGATAATTTTACAAATCG
Found at i:35006462 original size:27 final size:27
Alignment explanation
Indices: 35006443--35006545 Score: 134
Period size: 27 Copynumber: 3.8 Consensus size: 27
35006433 ATTACCAAAG
* * *
35006443 TACCCTCGATTTATAGAATTATCGTTT
1 TACCCTCGATTTACAGAATTACCATTT
35006470 TACCCTCGATTTACAGAATTACCATTT
1 TACCCTCGATTTACAGAATTACCATTT
* ***
35006497 TACCCTTGATTTACAGAATTATTGTTT
1 TACCCTCGATTTACAGAATTACCATTT
*
35006524 TACCCTCGATTTACAAAATTAC
1 TACCCTCGATTTACAGAATTAC
35006546 TAAAATGCCC
Statistics
Matches: 66, Mismatches: 10, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 66 1.00
ACGTcount: A:0.29, C:0.21, G:0.09, T:0.41
Consensus pattern (27 bp):
TACCCTCGATTTACAGAATTACCATTT
Found at i:35006556 original size:27 final size:27
Alignment explanation
Indices: 35006470--35006854 Score: 158
Period size: 27 Copynumber: 14.2 Consensus size: 27
35006460 ATTATCGTTT
* * ***
35006470 TACCCTCGATTTACAGAATTACCATTT
1 TACCCTCGATTTACAAAATTACTAAAA
* * * ****
35006497 TACCCTTGATTTACAGAATTATTGTTT
1 TACCCTCGATTTACAAAATTACTAAAA
35006524 TACCCTCGATTTACAAAATTACTAAAA
1 TACCCTCGATTTACAAAATTACTAAAA
* * * *
35006551 TGCCCTTGGTTTACAAAATTACCAAAA
1 TACCCTCGATTTACAAAATTACTAAAA
* *
35006578 TACCCTCGA-TCAGTAAAATTACTAAAA
1 TACCCTCGATTTA-CAAAATTACTAAAA
* * * *
35006605 TACCCTAG-TCTATAAAATTGCTAAAA
1 TACCCTCGATTTACAAAATTACTAAAA
* ** **
35006631 TACCC-CTGGTTTGTAAAATTACCGAAA
1 TACCCTC-GATTTACAAAATTACTAAAA
* ** *
35006658 TACCCTCAATTTGTAAAATTACCAAAA
1 TACCCTCGATTTACAAAATTACTAAAA
* ** *
35006685 TACCC-CTACTTTGTAAAATTACCAAAA
1 TACCCTCGA-TTTACAAAATTACTAAAA
* * ***
35006712 TATCACT-GGTTTGTGAAATTACTAAAA
1 TA-CCCTCGATTTACAAAATTACTAAAA
* ** *
35006739 TACCCTCAATTTGTAAAATTACCAAAA
1 TACCCTCGATTTACAAAATTACTAAAA
*
35006766 TACCC-CTGATTTACAAAGTTAC-AGAAA
1 TACCCTC-GATTTACAAAATTACTA-AAA
* *
35006793 TACCCTTGACTTT-CTAAAAATTA-TGGAAA
1 TACCCTCGA-TTTAC--AAAATTACT-AAAA
* * * *
35006822 TACCATTGGTTTACAAAATTACTGAAA
1 TACCCTCGATTTACAAAATTACTAAAA
35006849 TACCCT
1 TACCCT
35006855 TGGTTTGTAG
Statistics
Matches: 284, Mismatches: 55, Indels: 38
0.75 0.15 0.10
Matches are distributed among these distances:
26 28 0.10
27 229 0.81
28 10 0.04
29 17 0.06
ACGTcount: A:0.38, C:0.21, G:0.09, T:0.32
Consensus pattern (27 bp):
TACCCTCGATTTACAAAATTACTAAAA
Found at i:35006557 original size:54 final size:54
Alignment explanation
Indices: 35006430--35006571 Score: 176
Period size: 54 Copynumber: 2.6 Consensus size: 54
35006420 CTCAAATTGT
* * *
35006430 AAAATTACCAAAGTACCCTCGATTTATAGAATTATCGTTTTACCCTCGATTTAC
1 AAAATTACCAAAATACCCTTGATTTACAGAATTATCGTTTTACCCTCGATTTAC
* *** *
35006484 AGAATTACCATTTTACCCTTGATTTACAGAATTATTGTTTTACCCTCGATTTAC
1 AAAATTACCAAAATACCCTTGATTTACAGAATTATCGTTTTACCCTCGATTTAC
* * * *
35006538 AAAATTACTAAAATGCCCTTGGTTTACAAAATTA
1 AAAATTACCAAAATACCCTTGATTTACAGAATTA
35006572 CCAAAATACC
Statistics
Matches: 73, Mismatches: 15, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
54 73 1.00
ACGTcount: A:0.34, C:0.20, G:0.09, T:0.37
Consensus pattern (54 bp):
AAAATTACCAAAATACCCTTGATTTACAGAATTATCGTTTTACCCTCGATTTAC
Found at i:35006582 original size:54 final size:54
Alignment explanation
Indices: 35006524--35006883 Score: 253
Period size: 54 Copynumber: 6.6 Consensus size: 54
35006514 ATTATTGTTT
** * *
35006524 TACCCTCGATTTACAAAATTACTAAAATGCCCTTGGTTTACAAAATTACCAAAA
1 TACCCTCGATTTGTAAAATTACCAAAATACCCTTGGTTTACAAAATTACCAAAA
** * * * * * *
35006578 TACCCTCGATCAGTAAAATTACTAAAATACCC-TAGTCTATAAAATTGCTAAAA
1 TACCCTCGATTTGTAAAATTACCAAAATACCCTTGGTTTACAAAATTACCAAAA
* * *** **
35006631 TACCC-CTGGTTTGTAAAATTACCGAAATACCCTCAATTTGTAAAATTACCAAAA
1 TACCCTC-GATTTGTAAAATTACCAAAATACCCTTGGTTTACAAAATTACCAAAA
* * *** *
35006685 TACCC-CTACTTTGTAAAATTACCAAAATATCAC-TGGTTTGTGAAATTACTAAAA
1 TACCCTCGA-TTTGTAAAATTACCAAAATA-CCCTTGGTTTACAAAATTACCAAAA
* * * *
35006739 TACCCTCAATTTGTAAAATTACCAAAATACCCCTGATTTACAAAGTTA-CAGAAA
1 TACCCTCGATTTGTAAAATTACCAAAATACCCTTGGTTTACAAAATTACCA-AAA
* * *** * **
35006793 TACCCTTGACTTTCTAAAAATTATGGAAATACCATTGGTTTACAAAATTACTGAAA
1 TACCCTCGA-TTTGT-AAAATTACCAAAATACCCTTGGTTTACAAAATTACCAAAA
* * * * *
35006849 TACCCTTGGTTTGTAGATTTACCAAAACACCCTTG
1 TACCCTCGATTTGTAAAATTACCAAAATACCCTTG
35006884 TAGGATGAAA
Statistics
Matches: 237, Mismatches: 59, Indels: 20
0.75 0.19 0.06
Matches are distributed among these distances:
52 1 0.00
53 44 0.19
54 142 0.60
55 12 0.05
56 38 0.16
ACGTcount: A:0.39, C:0.21, G:0.09, T:0.31
Consensus pattern (54 bp):
TACCCTCGATTTGTAAAATTACCAAAATACCCTTGGTTTACAAAATTACCAAAA
Found at i:35006733 original size:81 final size:81
Alignment explanation
Indices: 35006538--35006772 Score: 285
Period size: 81 Copynumber: 2.9 Consensus size: 81
35006528 CTCGATTTAC
* * ** * ** *
35006538 AAAATTACTAAAATGCC-CTTGGTTTACAAAATTACCAAAATACCCTCGATCAGTAAAATTACTA
1 AAAATTACCAAAATACCAC-TGGTTTGTAAAATTACCAAAATACCCTCAATTTGTAAAATTACCA
*
35006602 AAATA-CCCTAGTCTAT
65 AAATACCCCTACTCTAT
* * * *
35006618 AAAATTGCTAAAATACCCCTGGTTTGTAAAATTACCGAAATACCCTCAATTTGTAAAATTACCAA
1 AAAATTACCAAAATACCACTGGTTTGTAAAATTACCAAAATACCCTCAATTTGTAAAATTACCAA
* *
35006683 AATACCCCTACTTTGT
66 AATACCCCTACTCTAT
* * *
35006699 AAAATTACCAAAATATCACTGGTTTGTGAAATTACTAAAATACCCTCAATTTGTAAAATTACCAA
1 AAAATTACCAAAATACCACTGGTTTGTAAAATTACCAAAATACCCTCAATTTGTAAAATTACCAA
35006764 AATACCCCT
66 AATACCCCT
35006773 GATTTACAAA
Statistics
Matches: 134, Mismatches: 19, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
80 58 0.43
81 76 0.57
ACGTcount: A:0.41, C:0.21, G:0.08, T:0.30
Consensus pattern (81 bp):
AAAATTACCAAAATACCACTGGTTTGTAAAATTACCAAAATACCCTCAATTTGTAAAATTACCAA
AATACCCCTACTCTAT
Found at i:35006794 original size:81 final size:80
Alignment explanation
Indices: 35006533--35006796 Score: 282
Period size: 81 Copynumber: 3.3 Consensus size: 80
35006523 TTACCCTCGA
* * ** * **
35006533 TTTACAAAATTACTAAAATGCC-CTTGGTTTACAAAATTACCAAAATACCCTCGATCAGTAAAAT
1 TTTATAAAATTAC-AAAATACCAC-TGGTTTGTAAAATTACCAAAATACCCTCAATTTGTAAAAT
* *
35006597 TACTAAAATA-CCCTAG
64 TACCAAAATACCCCTAC
* * * *
35006613 TCTATAAAATTGCTAAAATACCCCTGGTTTGTAAAATTACCGAAATACCCTCAATTTGTAAAATT
1 TTTATAAAATTAC-AAAATACCACTGGTTTGTAAAATTACCAAAATACCCTCAATTTGTAAAATT
35006678 ACCAAAATACCCCTAC
65 ACCAAAATACCCCTAC
* * * *
35006694 TTTGTAAAATTACCAAAATATCACTGGTTTGTGAAATTACTAAAATACCCTCAATTTGTAAAATT
1 TTTATAAAATTA-CAAAATACCACTGGTTTGTAAAATTACCAAAATACCCTCAATTTGTAAAATT
35006759 ACCAAAATACCCCTGA-
65 ACCAAAATACCCCT-AC
* *
35006775 TTTACAAAGTTACAGAAATACC
1 TTTATAAAATTACA-AAATACC
35006797 CTTGACTTTC
Statistics
Matches: 155, Mismatches: 24, Indels: 9
0.82 0.13 0.05
Matches are distributed among these distances:
80 63 0.41
81 90 0.58
82 2 0.01
ACGTcount: A:0.41, C:0.21, G:0.08, T:0.30
Consensus pattern (80 bp):
TTTATAAAATTACAAAATACCACTGGTTTGTAAAATTACCAAAATACCCTCAATTTGTAAAATTA
CCAAAATACCCCTAC
Found at i:35006857 original size:27 final size:27
Alignment explanation
Indices: 35006524--35006883 Score: 190
Period size: 27 Copynumber: 13.3 Consensus size: 27
35006514 ATTATTGTTT
* * *
35006524 TACCCTCGATTTACAAAATTACTAAAA
1 TACCCTTGGTTTATAAAATTACTAAAA
* * *
35006551 TGCCCTTGGTTTACAAAATTACCAAAA
1 TACCCTTGGTTTATAAAATTACTAAAA
* * *
35006578 TACCC-TCGATCAGTAAAATTACTAAAA
1 TACCCTTGGTTTA-TAAAATTACTAAAA
* * *
35006605 TACCC-TAGTCTATAAAATTGCTAAAA
1 TACCCTTGGTTTATAAAATTACTAAAA
* * **
35006631 TACCCCTGGTTTGTAAAATTACCGAAA
1 TACCCTTGGTTTATAAAATTACTAAAA
*** * *
35006658 TACCCTCAATTTGTAAAATTACCAAAA
1 TACCCTTGGTTTATAAAATTACTAAAA
* ** * *
35006685 TACCCCTACTTTGTAAAATTACCAAAA
1 TACCCTTGGTTTATAAAATTACTAAAA
* * *
35006712 TATCAC-TGGTTTGTGAAATTACTAAAA
1 TA-CCCTTGGTTTATAAAATTACTAAAA
*** * *
35006739 TACCCTCAATTTGTAAAATTACCAAAA
1 TACCCTTGGTTTATAAAATTACTAAAA
* * * *
35006766 TACCCCTGATTTACAAAGTTAC-AGAAA
1 TACCCTTGGTTTATAAAATTACTA-AAA
* * *
35006793 TACCCTTGACTTTCTAAAAATTA-TGGAAA
1 TACCCTTG-GTTTAT-AAAATTACT-AAAA
* * *
35006822 TACCATTGGTTTACAAAATTACTGAAA
1 TACCCTTGGTTTATAAAATTACTAAAA
* * * *
35006849 TACCCTTGGTTTGTAGATTTACCAAAA
1 TACCCTTGGTTTATAAAATTACTAAAA
*
35006876 CACCCTTG
1 TACCCTTG
35006884 TAGGATGAAA
Statistics
Matches: 259, Mismatches: 64, Indels: 20
0.76 0.19 0.06
Matches are distributed among these distances:
26 25 0.10
27 209 0.81
28 9 0.03
29 16 0.06
ACGTcount: A:0.39, C:0.21, G:0.09, T:0.31
Consensus pattern (27 bp):
TACCCTTGGTTTATAAAATTACTAAAA
Found at i:35006944 original size:27 final size:27
Alignment explanation
Indices: 35006914--35007005 Score: 123
Period size: 27 Copynumber: 3.4 Consensus size: 27
35006904 ACCCCTATTA
* *
35006914 GGTAAAAAGAACGTAAAGCCCCTGTAG
1 GGTAAAATGACCGTAAAGCCCCTGTAG
*
35006941 GGTAAAGTGACCGTAAAGCCCCTGTAG
1 GGTAAAATGACCGTAAAGCCCCTGTAG
* *
35006968 GGTAAAGTGACCGTAATA-CCCCTGTAT
1 GGTAAAATGACCGTAA-AGCCCCTGTAG
35006995 GGTAAAATGAC
1 GGTAAAATGAC
35007006 GAATATGCCC
Statistics
Matches: 59, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
27 58 0.98
28 1 0.02
ACGTcount: A:0.35, C:0.20, G:0.26, T:0.20
Consensus pattern (27 bp):
GGTAAAATGACCGTAAAGCCCCTGTAG
Found at i:35007837 original size:26 final size:26
Alignment explanation
Indices: 35007808--35007957 Score: 239
Period size: 26 Copynumber: 5.8 Consensus size: 26
35007798 GAGGAAGTGC
35007808 AAAAGGGCTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTACCG
*
35007834 AAAAGGGCTTATGCCCTAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTACCG
* *
35007860 AAAAAGGCTTATGCCCCAGTTTAACG
1 AAAAGGGCTTATGCCCCAGTTTACCG
**
35007886 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTACCG
*
35007912 AAAAGGGTTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTACCG
35007938 AAAAGGGCTT-TGCCCCAGTT
1 AAAAGGGCTTATGCCCCAGTT
35007958 ATTAAAGAGG
Statistics
Matches: 113, Mismatches: 11, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
25 10 0.09
26 103 0.91
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTACCG
Found at i:35008161 original size:42 final size:42
Alignment explanation
Indices: 35008102--35008193 Score: 139
Period size: 42 Copynumber: 2.2 Consensus size: 42
35008092 TAGTCTCCCC
** ** *
35008102 AAATGGGCTTGCATACATTTATTGGTATTTCATGTGATATTG
1 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
35008144 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
1 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
35008186 AAATGGGC
1 AAATGGGC
35008194 CTATAGGCCA
Statistics
Matches: 45, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
42 45 1.00
ACGTcount: A:0.29, C:0.13, G:0.22, T:0.36
Consensus pattern (42 bp):
AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
Found at i:35008262 original size:31 final size:31
Alignment explanation
Indices: 35008227--35008295 Score: 111
Period size: 31 Copynumber: 2.2 Consensus size: 31
35008217 AAAGGCTTCA
35008227 GCCCAGTGAAATAATTTATGAAAAAGCTTTG
1 GCCCAGTGAAATAATTTATGAAAAAGCTTTG
* * *
35008258 GCCCAGTGATATGATTTATGAAAAGGCTTTG
1 GCCCAGTGAAATAATTTATGAAAAAGCTTTG
35008289 GCCCAGT
1 GCCCAGT
35008296 AACCGTTAAA
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
31 35 1.00
ACGTcount: A:0.32, C:0.16, G:0.23, T:0.29
Consensus pattern (31 bp):
GCCCAGTGAAATAATTTATGAAAAAGCTTTG
Found at i:35012052 original size:46 final size:46
Alignment explanation
Indices: 35011994--35012215 Score: 214
Period size: 46 Copynumber: 4.7 Consensus size: 46
35011984 ATTTGTGTGT
* *** *
35011994 GAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCACCTTATGA
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACGAGACGA
* *
35012040 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGG-CATTGAGGCGA
1 GAGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCA-CGAGACGA
* * *
35012088 GAGCTAGTGTAAGACATGTCTGGGACATGCATTGGCCTCGAGACGTA
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACGAGACG-A
* * ** *
35012135 -AGGCAGTGTAAGACATGTCTGAGACATGCATCGGCTGCGAGATGA
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACGAGACGA
* * *
35012180 TAGTCAGTGTAAGACCATGTTTGGGACATGGCATCG
1 GAGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCG
35012216 ACTTGAGATA
Statistics
Matches: 146, Mismatches: 22, Indels: 14
0.80 0.12 0.08
Matches are distributed among these distances:
45 1 0.01
46 73 0.50
47 44 0.30
48 28 0.19
ACGTcount: A:0.26, C:0.19, G:0.32, T:0.23
Consensus pattern (46 bp):
GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACGAGACGA
Found at i:35012224 original size:47 final size:47
Alignment explanation
Indices: 35012044--35012264 Score: 179
Period size: 47 Copynumber: 4.7 Consensus size: 47
35012034 TTATGAGAGC
* * * *
35012044 CAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGGCGA-GAG
1 CAGTGTAAGACCATGTCTGGGACATGGCATCGAC-TCGAGACGATAAG
* *
35012091 CTAGTGTAAGA-CATGTCTGGGACAT-GCATTGGCCTCGAGACG-TAAGG
1 C-AGTGTAAGACCATGTCTGGGACATGGCA-TCGACTCGAGACGATAA-G
* * *
35012138 CAGTGTAAGA-CATGTCTGAGACAT-GCATCGGCTGCGAGATGAT-AG
1 CAGTGTAAGACCATGTCTGGGACATGGCATCGACT-CGAGACGATAAG
* * * *
35012183 TCAGTGTAAGACCATGTTTGGGACATGGCATCGACTTGAGA-TATGAG
1 -CAGTGTAAGACCATGTCTGGGACATGGCATCGACTCGAGACGATAAG
* * *
35012230 CCAGTATAAGACAATGTTTGGGACATGGCATCGAC
1 -CAGTGTAAGACCATGTCTGGGACATGGCATCGAC
35012265 ACCTTATCCA
Statistics
Matches: 147, Mismatches: 17, Indels: 20
0.80 0.09 0.11
Matches are distributed among these distances:
45 5 0.03
46 54 0.37
47 71 0.48
48 17 0.12
ACGTcount: A:0.28, C:0.18, G:0.31, T:0.23
Consensus pattern (47 bp):
CAGTGTAAGACCATGTCTGGGACATGGCATCGACTCGAGACGATAAG
Found at i:35012252 original size:140 final size:140
Alignment explanation
Indices: 35011999--35012256 Score: 349
Period size: 140 Copynumber: 1.8 Consensus size: 140
35011989 TGTGTGAGCT
* **
35011999 AGTGTAAGACATGTCTGGGACATGCATCGGCCACCTTATGAGAGCCAGTGTAAGACCATGTCTGG
1 AGTGTAAGACATGTCTGAGACATGCATCGGCCACCAGATGAGAGCCAGTGTAAGACCATGTCTGG
* * * *
35012064 GACATGGCATCGGCATTGAGGCGAGAGCTAGTGTAAGACATGTCTGGGACATGCATTGGCCTCGA
66 GACATGGCATCGACATTGAGGAGAGAGCCAGTATAAGACATGTCTGGGACATGCATTGGCCTCGA
35012129 GACGTAAGGC
131 GACGTAAGGC
** * * * *
35012139 AGTGTAAGACATGTCTGAGACATGCATCGGCTGCGAGATGATAGTCAGTGTAAGACCATGTTTGG
1 AGTGTAAGACATGTCTGAGACATGCATCGGCCACCAGATGAGAGCCAGTGTAAGACCATGTCTGG
* *
35012204 GACATGGCATCGAC-TTGA-GATATGAGCCAGTATAAGACAATGTTTGGGACATG
66 GACATGGCATCGACATTGAGGAGA-GAGCCAGTATAAGAC-ATGTCTGGGACATG
35012257 GCATCGACAC
Statistics
Matches: 101, Mismatches: 15, Indels: 4
0.84 0.12 0.03
Matches are distributed among these distances:
138 2 0.02
139 17 0.17
140 82 0.81
ACGTcount: A:0.28, C:0.18, G:0.31, T:0.23
Consensus pattern (140 bp):
AGTGTAAGACATGTCTGAGACATGCATCGGCCACCAGATGAGAGCCAGTGTAAGACCATGTCTGG
GACATGGCATCGACATTGAGGAGAGAGCCAGTATAAGACATGTCTGGGACATGCATTGGCCTCGA
GACGTAAGGC
Found at i:35014709 original size:40 final size:40
Alignment explanation
Indices: 35014635--35014853 Score: 340
Period size: 40 Copynumber: 5.6 Consensus size: 40
35014625 AACCCAAGTA
* *
35014635 CCTTCGGGATTTAG-CCGGATATAG-CAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAA-TAGCACAAATG
* *
35014674 CCTTCGGGTCTTAGCCCGGATATAGTCAATAGCACAAAAG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
*
35014714 CCTTCGGGACTTAGCCC-GATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
35014753 CCTT-GGGACTTAGCCC-GATATAGTCAATAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
*
35014791 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
35014831 CCTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
35014854 CATTCGAATA
Statistics
Matches: 167, Mismatches: 9, Indels: 7
0.91 0.05 0.04
Matches are distributed among these distances:
38 37 0.22
39 48 0.29
40 79 0.47
41 3 0.02
ACGTcount: A:0.28, C:0.26, G:0.22, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
Found at i:35023329 original size:40 final size:40
Alignment explanation
Indices: 35023255--35023476 Score: 367
Period size: 40 Copynumber: 5.6 Consensus size: 40
35023245 AACCCAAGTA
* *
35023255 CCTTCGGGATTTAG-CCGGATATAG-CAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAA-TAGCACAAATG
* *
35023294 CCTTCGGGTCTTAGCCCGGATATAGTCAATAGCACAAAAG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
*
35023334 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
35023374 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
*
35023414 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
35023454 CCTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
35023477 CATTCGAATA
Statistics
Matches: 172, Mismatches: 9, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
39 12 0.07
40 157 0.91
41 3 0.02
ACGTcount: A:0.27, C:0.27, G:0.23, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
Found at i:35028181 original size:20 final size:20
Alignment explanation
Indices: 35028152--35028189 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
35028142 TAAATCTGCT
35028152 AAAAAATAAAAATCAAAATC
1 AAAAAATAAAAATCAAAATC
* *
35028172 AAAAATTAAAAATTAAAA
1 AAAAAATAAAAATCAAAA
35028190 AGTAGTTTGA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.76, C:0.05, G:0.00, T:0.18
Consensus pattern (20 bp):
AAAAAATAAAAATCAAAATC
Found at i:35041308 original size:53 final size:53
Alignment explanation
Indices: 35041136--35041341 Score: 200
Period size: 53 Copynumber: 3.8 Consensus size: 53
35041126 ATTAGAGTTT
* * * * * *
35041136 AAGGATACCAAGTATGACCATGCCAAGGCATGACATTGGTAAGTTTTACAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGGCATGGCAATGGTAAG-TTCATAAGGC
* * * * * * *
35041190 AAGGAAATCATGTAAGA-CATGTCAAGAG-ATGGCATTGATAAACTACTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAG-GCATGGCAATGGT-AAGTTC-ATAAGGC
* * *
35041244 AAAGATCCCATGTAAGACCATGCCAAGGCATGGCAATGGTGAGTTCATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGGCATGGCAATGGTAAGTTCATAAGGC
* *
35041297 AAGGATACCATGTAAGACCATGTCAAGACATGGCAATGGTAAGTT
1 AAGGATACCATGTAAGACCATGCCAAGGCATGGCAATGGTAAGTT
35041342 TAAAAAGGAA
Statistics
Matches: 121, Mismatches: 26, Indels: 11
0.77 0.16 0.07
Matches are distributed among these distances:
53 65 0.54
54 39 0.32
55 17 0.14
ACGTcount: A:0.37, C:0.17, G:0.24, T:0.21
Consensus pattern (53 bp):
AAGGATACCATGTAAGACCATGCCAAGGCATGGCAATGGTAAGTTCATAAGGC
Found at i:35046995 original size:40 final size:40
Alignment explanation
Indices: 35046950--35047141 Score: 226
Period size: 40 Copynumber: 4.8 Consensus size: 40
35046940 ATAACCACAA
* * *
35046950 GCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGCAACTC
*
35046990 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGCAACTC
* * *
35047030 GCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT-ATAGCAACTC
* * * * *
35047070 GCATAAATGCCTTCGGGACTTAGCCCGGATAAAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT-ATAGCAACTC
* *
35047110 GCATAAATGCCTTCGGGACTTAGCCCGGATAT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATAT
35047142 CATTCAAATG
Statistics
Matches: 142, Mismatches: 9, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
39 1 0.01
40 137 0.96
41 4 0.03
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGCAACTC
Found at i:35047034 original size:80 final size:80
Alignment explanation
Indices: 35046921--35047140 Score: 248
Period size: 80 Copynumber: 2.8 Consensus size: 80
35046911 ACCCAAGTTT
* * * * * * * * *
35046921 CTTCGGAATTTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAACCCGGGT-ATAG
1 CTTCGGGACTTAGCCCGGATAAAATCACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATAAAAG
*
35046984 CAACTCGCACAAATGC
66 C-ACTAGCACAAATGC
* * *
35047000 CTTCGGGTCTTAGCCCGGAT-ATATCAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATAAAA
1 CTTCGGGACTTAGCCCGGATAAAATC-ACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATAAAA
* *
35047064 TCACTAGCATAAATGC
65 GCACTAGCACAAATGC
* *
35047080 CTTCGGGACTTAGCCCGGATAAAATCACTAGCATAAATGCCTTCGGGACTTAGCCCGGATA
1 CTTCGGGACTTAGCCCGGATAAAATCACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATA
35047141 TCATTCAAAT
Statistics
Matches: 117, Mismatches: 20, Indels: 7
0.81 0.14 0.05
Matches are distributed among these distances:
79 12 0.10
80 98 0.84
81 7 0.06
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (80 bp):
CTTCGGGACTTAGCCCGGATAAAATCACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATAAAAG
CACTAGCACAAATGC
Found at i:35054312 original size:40 final size:40
Alignment explanation
Indices: 35054267--35054458 Score: 226
Period size: 40 Copynumber: 4.8 Consensus size: 40
35054257 ATAACCACAA
* * *
35054267 GCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGCAACTC
*
35054307 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGCAACTC
* * *
35054347 GCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT-ATAGCAACTC
* * * * *
35054387 GCATAAATGCCTTCGGGACTTAGCCCGGATAAAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT-ATAGCAACTC
* *
35054427 GCATAAATGCCTTCGGGACTTAGCCCGGATAT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATAT
35054459 CATTCAAATG
Statistics
Matches: 142, Mismatches: 9, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
39 1 0.01
40 137 0.96
41 4 0.03
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGCAACTC
Found at i:35054351 original size:80 final size:80
Alignment explanation
Indices: 35054238--35054457 Score: 248
Period size: 80 Copynumber: 2.8 Consensus size: 80
35054228 ACCCAAGTTT
* * * * * * * * *
35054238 CTTCGGAATTTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAACCCGGGT-ATAG
1 CTTCGGGACTTAGCCCGGATAAAATCACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATAAAAG
*
35054301 CAACTCGCACAAATGC
66 C-ACTAGCACAAATGC
* * *
35054317 CTTCGGGTCTTAGCCCGGAT-ATATCAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATAAAA
1 CTTCGGGACTTAGCCCGGATAAAATC-ACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATAAAA
* *
35054381 TCACTAGCATAAATGC
65 GCACTAGCACAAATGC
* *
35054397 CTTCGGGACTTAGCCCGGATAAAATCACTAGCATAAATGCCTTCGGGACTTAGCCCGGATA
1 CTTCGGGACTTAGCCCGGATAAAATCACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATA
35054458 TCATTCAAAT
Statistics
Matches: 117, Mismatches: 20, Indels: 7
0.81 0.14 0.05
Matches are distributed among these distances:
79 12 0.10
80 98 0.84
81 7 0.06
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (80 bp):
CTTCGGGACTTAGCCCGGATAAAATCACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATAAAAG
CACTAGCACAAATGC
Found at i:35066645 original size:43 final size:40
Alignment explanation
Indices: 35066565--35066679 Score: 115
Period size: 43 Copynumber: 2.7 Consensus size: 40
35066555 AGATATCGTG
* *
35066565 TAAGACCGTGTCTGGGACATAGGCCTCGATTGAGATTTACGTA
1 TAAGACC-TGTCTGGGACATAGGCATCGATT-AGATTT-CATA
*
35066608 TAAGACCATGTCTGGGACATCGGCATCGTATCT-GATTTCATA
1 TAAGACC-TGTCTGGGACATAGGCATCG-AT-TAGATTTCATA
* *
35066650 TAAGACTCTGTCTAGGACAGAGGCATCGAT
1 TAAGAC-CTGTCTGGGACATAGGCATCGAT
35066680 ATTGAATGAC
Statistics
Matches: 62, Mismatches: 7, Indels: 8
0.81 0.09 0.10
Matches are distributed among these distances:
41 2 0.03
42 26 0.42
43 31 0.50
44 2 0.03
45 1 0.02
ACGTcount: A:0.27, C:0.20, G:0.25, T:0.28
Consensus pattern (40 bp):
TAAGACCTGTCTGGGACATAGGCATCGATTAGATTTCATA
Done.