Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A06
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 115140250
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2234201 characters in sequence are not A, C, G, or T
File 108 of 345
Found at i:35753528 original size:40 final size:40
Alignment explanation
Indices: 35753421--35753627 Score: 278
Period size: 40 Copynumber: 5.2 Consensus size: 40
35753411 GGATTGATAC
* *
35753421 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-T
* *
35753461 TCGAGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
35753500 CCGGGCTTAGTCTCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
35753540 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * *
35753580 CCGGGCTAAGTCCCGAAGACATTTGAGCTAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
35753620 CC-GGCTAA
1 CCGGGCTAA
35753628 ACTCCGAAGG
Statistics
Matches: 149, Mismatches: 15, Indels: 7
0.87 0.09 0.04
Matches are distributed among these distances:
39 40 0.27
40 109 0.73
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:35753636 original size:119 final size:119
Alignment explanation
Indices: 35753421--35753637 Score: 280
Period size: 119 Copynumber: 1.8 Consensus size: 119
35753411 GGATTGATAC
* ** * *
35753421 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTTCGAGCTAAGCCCGAAGGCATTTGT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAATACCGAGCTAAGCCCGAAGACATTTGA
* *
35753486 GCGAGTTACTATATCCGGGCTTAGTCTCGAAGGCATTTGTGCGAGTTACTATAT
66 GCGAGTTACTATATCCGGGCTAACTCTCGAAGGCATTTGTGCGAGTTACTATAT
* *
35753540 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTAAGTCCCGAAGACATTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAAT-ACCGAGCTAAG-CCCGAAGACATTT
*
35753604 GAGCTAG-TAGCTATATCC-GGCTAAACTC-CGAAGG
64 GAGCGAGTTA-CTATATCCGGGCT-AACTCTCGAAGG
35753638 TACTTGGTTT
Statistics
Matches: 84, Mismatches: 10, Indels: 8
0.82 0.10 0.08
Matches are distributed among these distances:
118 2 0.02
119 54 0.64
120 28 0.33
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (119 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAATACCGAGCTAAGCCCGAAGACATTTGA
GCGAGTTACTATATCCGGGCTAACTCTCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:35772305 original size:22 final size:21
Alignment explanation
Indices: 35772277--35772328 Score: 61
Period size: 22 Copynumber: 2.4 Consensus size: 21
35772267 AACAGAAAAT
35772277 ACCATAACAAAAATGAACTCAA
1 ACCATAACAAAAAT-AACTCAA
* *
35772299 ACCATAAGCAAACATAACTGAA
1 ACCATAA-CAAAAATAACTCAA
35772321 ACCA-AACA
1 ACCATAACA
35772329 TGGAAATTAA
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
20 2 0.07
21 2 0.07
22 17 0.63
23 6 0.22
ACGTcount: A:0.58, C:0.25, G:0.06, T:0.12
Consensus pattern (21 bp):
ACCATAACAAAAATAACTCAA
Found at i:35774650 original size:29 final size:29
Alignment explanation
Indices: 35774601--35774665 Score: 85
Period size: 29 Copynumber: 2.2 Consensus size: 29
35774591 ATGCATATCT
* * *
35774601 GGCCCAATTCATATTCTTATGGCCTACTA
1 GGCCCAATTCACATTCATATGGCCCACTA
* *
35774630 GGCCCAATTCACCTTCATATGGCCCATTA
1 GGCCCAATTCACATTCATATGGCCCACTA
35774659 GGCCCAA
1 GGCCCAA
35774666 ATCATATTAT
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
29 31 1.00
ACGTcount: A:0.25, C:0.32, G:0.15, T:0.28
Consensus pattern (29 bp):
GGCCCAATTCACATTCATATGGCCCACTA
Found at i:35782074 original size:29 final size:29
Alignment explanation
Indices: 35781993--35782107 Score: 90
Period size: 29 Copynumber: 4.0 Consensus size: 29
35781983 TACATACATG
* * *
35781993 CATATAGCCCACTAGGCCCAA-TCTTATT
1 CATATGGCCCACTAGACCCAATTCATATT
* * *
35782021 CAAATGGCCCATCT-GGCCCAGTTCATATT
1 CATATGGCCCA-CTAGACCCAATTCATATT
* * **
35782050 CTTATGGCCCACTAGACCTAATTCACCTT
1 CATATGGCCCACTAGACCCAATTCATATT
* * *
35782079 CATATGGCCCATTAGGCCCAAATCATATT
1 CATATGGCCCACTAGACCCAATTCATATT
35782108 ATACTCATAC
Statistics
Matches: 66, Mismatches: 18, Indels: 5
0.74 0.20 0.06
Matches are distributed among these distances:
28 17 0.26
29 49 0.74
ACGTcount: A:0.27, C:0.31, G:0.13, T:0.29
Consensus pattern (29 bp):
CATATGGCCCACTAGACCCAATTCATATT
Found at i:35792504 original size:24 final size:24
Alignment explanation
Indices: 35792472--35792522 Score: 102
Period size: 24 Copynumber: 2.1 Consensus size: 24
35792462 AGAAATTACA
35792472 TTAGTTTGTTTAAAAACCTAGAAG
1 TTAGTTTGTTTAAAAACCTAGAAG
35792496 TTAGTTTGTTTAAAAACCTAGAAG
1 TTAGTTTGTTTAAAAACCTAGAAG
35792520 TTA
1 TTA
35792523 AATCCTAACT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.37, C:0.08, G:0.16, T:0.39
Consensus pattern (24 bp):
TTAGTTTGTTTAAAAACCTAGAAG
Found at i:35796167 original size:13 final size:15
Alignment explanation
Indices: 35796139--35796171 Score: 52
Period size: 13 Copynumber: 2.3 Consensus size: 15
35796129 TTTATTCAAT
35796139 TTTTATGTGATTAAA
1 TTTTATGTGATTAAA
35796154 TTTTAT-TG-TTAAA
1 TTTTATGTGATTAAA
35796167 TTTTA
1 TTTTA
35796172 AATTTGATCA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 10 0.56
14 2 0.11
15 6 0.33
ACGTcount: A:0.30, C:0.00, G:0.09, T:0.61
Consensus pattern (15 bp):
TTTTATGTGATTAAA
Found at i:35802151 original size:34 final size:31
Alignment explanation
Indices: 35802089--35802153 Score: 78
Period size: 33 Copynumber: 2.0 Consensus size: 31
35802079 ATAAAAATTT
*
35802089 AATAAATAAAAATTATTAAATATTAAATTAA
1 AATAAATAAAAATTATTAAAAATTAAATTAA
35802120 AATAATATAAAAAATT-TTAAAAATTTAAAATTAA
1 AATAA-AT-AAAAATTATTAAAAA-TT-AAATTAA
35802154 TATGAGCGGG
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
31 5 0.17
32 8 0.28
33 9 0.31
34 7 0.24
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (31 bp):
AATAAATAAAAATTATTAAAAATTAAATTAA
Found at i:35807398 original size:24 final size:24
Alignment explanation
Indices: 35807371--35807416 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
35807361 TCAATGAATG
*
35807371 GATTATGGAGAAAATCAAGGAGAA
1 GATTAGGGAGAAAATCAAGGAGAA
* *
35807395 GATTGGGGAGAAAATCATGGAG
1 GATTAGGGAGAAAATCAAGGAG
35807417 GGATTTTAGG
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.43, C:0.04, G:0.35, T:0.17
Consensus pattern (24 bp):
GATTAGGGAGAAAATCAAGGAGAA
Found at i:35808062 original size:40 final size:40
Alignment explanation
Indices: 35808007--35808087 Score: 162
Period size: 40 Copynumber: 2.0 Consensus size: 40
35807997 GCTCTACTCC
35808007 ATTGTTTGTTTGGTAGTTTAAGACCGTGGACCAATTCTTT
1 ATTGTTTGTTTGGTAGTTTAAGACCGTGGACCAATTCTTT
35808047 ATTGTTTGTTTGGTAGTTTAAGACCGTGGACCAATTCTTT
1 ATTGTTTGTTTGGTAGTTTAAGACCGTGGACCAATTCTTT
35808087 A
1 A
35808088 CCTTTTTCCC
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 41 1.00
ACGTcount: A:0.21, C:0.12, G:0.22, T:0.44
Consensus pattern (40 bp):
ATTGTTTGTTTGGTAGTTTAAGACCGTGGACCAATTCTTT
Found at i:35809055 original size:27 final size:27
Alignment explanation
Indices: 35809003--35809064 Score: 79
Period size: 27 Copynumber: 2.3 Consensus size: 27
35808993 GACCTCAGTT
* **
35809003 TGTAAAATTACTAAAATACATTTGTAG
1 TGTAAAATTACCAAAATACACCTGTAG
*
35809030 TGTAAAATTACCAAAATACCCCTGTAG
1 TGTAAAATTACCAAAATACACCTGTAG
*
35809057 GGTAAAAT
1 TGTAAAAT
35809065 GACTGTTTTG
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.44, C:0.13, G:0.13, T:0.31
Consensus pattern (27 bp):
TGTAAAATTACCAAAATACACCTGTAG
Found at i:35810893 original size:38 final size:36
Alignment explanation
Indices: 35810818--35810894 Score: 86
Period size: 38 Copynumber: 2.1 Consensus size: 36
35810808 TTCCAAAAAT
*
35810818 AATATTATTTTAATAAATTTTAAATTAGATTAAATTA
1 AATATTATCTTAATAAATTTT-AATTAGATTAAATTA
35810855 AATACTTATCTTAATAATATTTT-ATTA-ATTTAATATTA
1 AATA-TTATCTTAATAA-ATTTTAATTAGA-TTAA-ATTA
35810893 AA
1 AA
35810895 GTGATTAAGT
Statistics
Matches: 35, Mismatches: 1, Indels: 7
0.81 0.02 0.16
Matches are distributed among these distances:
36 1 0.03
37 12 0.34
38 17 0.49
39 5 0.14
ACGTcount: A:0.47, C:0.03, G:0.01, T:0.49
Consensus pattern (36 bp):
AATATTATCTTAATAAATTTTAATTAGATTAAATTA
Found at i:35816619 original size:40 final size:40
Alignment explanation
Indices: 35816524--35816741 Score: 293
Period size: 40 Copynumber: 5.5 Consensus size: 40
35816514 TGGATGATAA
*
35816524 CCGGGCTAAGTCCCGAAGGCATTT-TGCGCTAGTGACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCG--AGTTACTA-TAT
* *
35816565 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
35816605 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
35816645 CCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
35816685 CCGGGCTATGTCCCGAAGGCA-TTGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
* *
35816724 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
35816742 TACTTGGCTT
Statistics
Matches: 162, Mismatches: 12, Indels: 9
0.89 0.07 0.05
Matches are distributed among these distances:
38 15 0.09
39 15 0.09
40 104 0.64
41 24 0.15
42 4 0.02
ACGTcount: A:0.22, C:0.23, G:0.29, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:35824651 original size:39 final size:40
Alignment explanation
Indices: 35824548--35824763 Score: 275
Period size: 39 Copynumber: 5.5 Consensus size: 40
35824538 TGGATGATAA
*
35824548 CCGGGCTAAGTCCCGAAGGCATTT-TGCGCTAGTGACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCG--AGTTACTA-TAT
* *
35824589 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
35824629 CCGGGCT-AGTCCCGAAGGCATTTGTGC-AGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
35824667 CCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
35824707 CCGGGCTATGTCCCGAAGGCA-TTGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
* *
35824746 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
35824764 TACTTGGCTT
Statistics
Matches: 158, Mismatches: 12, Indels: 13
0.86 0.07 0.07
Matches are distributed among these distances:
38 31 0.20
39 54 0.34
40 45 0.28
41 24 0.15
42 4 0.03
ACGTcount: A:0.22, C:0.24, G:0.29, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:35827567 original size:11 final size:11
Alignment explanation
Indices: 35827541--35827604 Score: 78
Period size: 11 Copynumber: 6.0 Consensus size: 11
35827531 AAAATAAAAA
35827541 ATTA-TATTTT
1 ATTATTATTTT
35827551 -TTATTATTTT
1 ATTATTATTTT
* *
35827561 CTTATTATATT
1 ATTATTATTTT
* *
35827572 GTTACTATTTT
1 ATTATTATTTT
35827583 ATTATTATTTT
1 ATTATTATTTT
35827594 ATTATTATTTT
1 ATTATTATTTT
35827605 GTTGTTACTA
Statistics
Matches: 46, Mismatches: 6, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
9 3 0.07
10 6 0.13
11 37 0.80
ACGTcount: A:0.25, C:0.03, G:0.02, T:0.70
Consensus pattern (11 bp):
ATTATTATTTT
Found at i:35827593 original size:33 final size:32
Alignment explanation
Indices: 35827545--35827607 Score: 99
Period size: 33 Copynumber: 1.9 Consensus size: 32
35827535 TAAAAAATTA
*
35827545 TATTTTTTATTATTTTCTTATTATATTGTTAC
1 TATTTTTTATTATTTTATTATTATATTGTTAC
*
35827577 TATTTTATTATTATTTTATTATTATTTTGTT
1 TATTTT-TTATTATTTTATTATTATATTGTT
35827608 GTTACTATTT
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
32 6 0.21
33 22 0.79
ACGTcount: A:0.22, C:0.03, G:0.03, T:0.71
Consensus pattern (32 bp):
TATTTTTTATTATTTTATTATTATATTGTTAC
Found at i:35827742 original size:41 final size:42
Alignment explanation
Indices: 35827697--35827792 Score: 101
Period size: 41 Copynumber: 2.3 Consensus size: 42
35827687 TACTTATCTT
*
35827697 AATATTAGTATACATATTTTTAAT-T-TT-TTTAATTTTTAAAA
1 AATATTA-TATA-ATATTTTTAATGTATTATATAATTTTTAAAA
* *
35827738 AATATTTATTTTAATATTTTTAATGTATTATATATTTTTTAAAA
1 AATA-TTA-TATAATATTTTTAATGTATTATATAATTTTTAAAA
35827782 AA-ATTATATAA
1 AATATTATATAA
35827793 AAAATTTAAC
Statistics
Matches: 46, Mismatches: 5, Indels: 8
0.78 0.08 0.14
Matches are distributed among these distances:
41 19 0.41
42 10 0.22
43 3 0.07
44 14 0.30
ACGTcount: A:0.42, C:0.01, G:0.02, T:0.55
Consensus pattern (42 bp):
AATATTATATAATATTTTTAATGTATTATATAATTTTTAAAA
Found at i:35828608 original size:29 final size:29
Alignment explanation
Indices: 35828552--35828608 Score: 71
Period size: 29 Copynumber: 2.0 Consensus size: 29
35828542 ATTTGAACCA
*
35828552 TAAATAAAAATTCATGTATATAATTATAT
1 TAAATAAAAATTCATGTATATAAGTATAT
* *
35828581 TAAATTAAAATTTATGTATCA-AAGTATA
1 TAAATAAAAATTCATGTAT-ATAAGTATA
35828609 CACTTGATAT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
29 23 0.96
30 1 0.04
ACGTcount: A:0.51, C:0.04, G:0.05, T:0.40
Consensus pattern (29 bp):
TAAATAAAAATTCATGTATATAAGTATAT
Found at i:35831606 original size:25 final size:25
Alignment explanation
Indices: 35831572--35831620 Score: 98
Period size: 25 Copynumber: 2.0 Consensus size: 25
35831562 CTATAGAAGT
35831572 ATGCTTCTTGCCTTTTCCTTTTGAG
1 ATGCTTCTTGCCTTTTCCTTTTGAG
35831597 ATGCTTCTTGCCTTTTCCTTTTGA
1 ATGCTTCTTGCCTTTTCCTTTTGA
35831621 TGGAGCTCTA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.08, C:0.24, G:0.14, T:0.53
Consensus pattern (25 bp):
ATGCTTCTTGCCTTTTCCTTTTGAG
Found at i:35834670 original size:21 final size:20
Alignment explanation
Indices: 35834644--35834683 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
35834634 TTATTTTTAT
35834644 TTATATATAAGAAACATAAAA
1 TTATAT-TAAGAAACATAAAA
* *
35834665 TTATATTTAGAAATATAAA
1 TTATATTAAGAAACATAAA
35834684 CAACTTATTA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 11 0.65
21 6 0.35
ACGTcount: A:0.57, C:0.03, G:0.05, T:0.35
Consensus pattern (20 bp):
TTATATTAAGAAACATAAAA
Found at i:35836361 original size:17 final size:16
Alignment explanation
Indices: 35836339--35836370 Score: 55
Period size: 17 Copynumber: 1.9 Consensus size: 16
35836329 ATCCTCTCGA
35836339 TCTCAAAACTCATATCC
1 TCTCAAAACTC-TATCC
35836356 TCTCAAAACTCTATC
1 TCTCAAAACTCTATC
35836371 AAATTCTTGG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 4 0.27
17 11 0.73
ACGTcount: A:0.34, C:0.34, G:0.00, T:0.31
Consensus pattern (16 bp):
TCTCAAAACTCTATCC
Found at i:35838780 original size:42 final size:42
Alignment explanation
Indices: 35838731--35838855 Score: 169
Period size: 42 Copynumber: 3.0 Consensus size: 42
35838721 TTCATTTTCT
** * *
35838731 CGATGCCATAGTTCAACTATGGTCTTACACATCTTCACATAA
1 CGATGCCATAGCCCAGCTATGGTCTTACACATATTCACATAA
* * *
35838773 TGATGCCATAGCCCAGCTATGGTCTTACACATATTCATATAC
1 CGATGCCATAGCCCAGCTATGGTCTTACACATATTCACATAA
* *
35838815 CGATGCCATAGCCCAGCTATGGTCTTACACGTAATCACATA
1 CGATGCCATAGCCCAGCTATGGTCTTACACATATTCACATA
35838856 TCACATATCG
Statistics
Matches: 72, Mismatches: 11, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
42 72 1.00
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.29
Consensus pattern (42 bp):
CGATGCCATAGCCCAGCTATGGTCTTACACATATTCACATAA
Found at i:35838952 original size:95 final size:93
Alignment explanation
Indices: 35838816--35838989 Score: 224
Period size: 95 Copynumber: 1.8 Consensus size: 93
35838806 TTCATATACC
* * * *
35838816 GATGCCATAGCCCAGCTATGGTCTTACACGTAATCACATATCACATATCGATCCCATAGCCCAGC
1 GATGCCATAGCCCAGATATGGTCTTACACGTAAGCACATATCAC--ACCGATCCCATAGCCCAGA
35838881 TATGGTTTTAGACGAATCACATATCTCACT
64 TATGGTTTTAGACGAATCACATATCTCACT
* * * * *
35838911 GATGCCATATCCCAGATATGGTCTTATACAGT-AGCATATATCACACCGATGCCATATCCCAGAT
1 GATGCCATAGCCCAGATATGGTCTTACAC-GTAAGCACATATCACACCGATCCCATAGCCCAGAT
*
35838975 ATGGTTTTATACGAA
65 ATGGTTTTAGACGAA
35838990 AGCACATGAT
Statistics
Matches: 68, Mismatches: 10, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
93 30 0.44
95 36 0.53
96 2 0.03
ACGTcount: A:0.30, C:0.26, G:0.16, T:0.28
Consensus pattern (93 bp):
GATGCCATAGCCCAGATATGGTCTTACACGTAAGCACATATCACACCGATCCCATAGCCCAGATA
TGGTTTTAGACGAATCACATATCTCACT
Found at i:35838965 original size:47 final size:46
Alignment explanation
Indices: 35838813--35838987 Score: 179
Period size: 47 Copynumber: 3.7 Consensus size: 46
35838803 ATATTCATAT
* *
35838813 ACCGATGCCATAGCCCAGCTATGGTCTTACACGTAATCACATATCAC
1 ACCGATGCCATAGCCCAGATATGGTCTTATACGT-ATCACATATCAC
* * * * * * *
35838860 ATATCGATCCCATAGCCCAGCTATGGTTTTAGACGAATCACATATCTC
1 --ACCGATGCCATAGCCCAGATATGGTCTTATACGTATCACATATCAC
* * * *
35838908 ACTGATGCCATATCCCAGATATGGTCTTATACAGTAGCATATATCAC
1 ACCGATGCCATAGCCCAGATATGGTCTTATAC-GTATCACATATCAC
* *
35838955 ACCGATGCCATATCCCAGATATGGTTTTATACG
1 ACCGATGCCATAGCCCAGATATGGTCTTATACG
35838988 AAAGCACATG
Statistics
Matches: 106, Mismatches: 19, Indels: 5
0.82 0.15 0.04
Matches are distributed among these distances:
46 26 0.25
47 40 0.38
48 11 0.10
49 29 0.27
ACGTcount: A:0.30, C:0.27, G:0.15, T:0.28
Consensus pattern (46 bp):
ACCGATGCCATAGCCCAGATATGGTCTTATACGTATCACATATCAC
Found at i:35839025 original size:53 final size:53
Alignment explanation
Indices: 35838956--35839057 Score: 134
Period size: 53 Copynumber: 1.9 Consensus size: 53
35838946 ATATATCACA
* * *
35838956 CCGATGCCATATCCCAGATATGGTTTTATA-CGAAAGCACATGATCACATCTCT
1 CCGATGCCATAGCCCAGATATAGTATTATATCGAAAGCACAT-ATCACATCTCT
* * *
35839009 CCGATGCCATAGCCCAGCTATAGTATTATATGGAAATCACATATCACAT
1 CCGATGCCATAGCCCAGATATAGTATTATATCGAAAGCACATATCACAT
35839058 GTTGCCATGG
Statistics
Matches: 42, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
53 33 0.79
54 9 0.21
ACGTcount: A:0.32, C:0.25, G:0.15, T:0.27
Consensus pattern (53 bp):
CCGATGCCATAGCCCAGATATAGTATTATATCGAAAGCACATATCACATCTCT
Found at i:35844799 original size:46 final size:45
Alignment explanation
Indices: 35844696--35844912 Score: 181
Period size: 46 Copynumber: 4.7 Consensus size: 45
35844686 GCATATCTGT
* *
35844696 GCCGATGCCATGTCCCAGACATGGTCTTACACTGAC-ACATCTCGTA-
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCTTCATCTCG-AG
* * *
35844742 GCTGATGCATGTCCCAAACATGTCTTACACTGGCTTACGTCTCGAG
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTT-CATCTCGAG
* * * * *
35844788 GCCGATGCATGTCCTAGACATGTCTTACACTGGCACTCGTCTCAAT
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGC-TTCATCTCGAG
* * * *
35844834 GCC-ATTGCCATGTCCTAGACATGGTTTTACACTGGCTCTCATAAT-GTG
1 GCCGA-TG-CATGTCCCAGACAT-GTCTTACACTGGCT-TCAT-CTCGAG
*
35844882 GCCGATGCATGTCCCAAACATGTCTTACACT
1 GCCGATGCATGTCCCAGACATGTCTTACACT
35844913 AGCTCACACA
Statistics
Matches: 140, Mismatches: 21, Indels: 20
0.77 0.12 0.11
Matches are distributed among these distances:
44 12 0.09
45 15 0.11
46 64 0.46
47 27 0.19
48 20 0.14
49 2 0.01
ACGTcount: A:0.23, C:0.29, G:0.20, T:0.28
Consensus pattern (45 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTGGCTTCATCTCGAG
Found at i:35849235 original size:36 final size:36
Alignment explanation
Indices: 35849188--35849259 Score: 135
Period size: 36 Copynumber: 2.0 Consensus size: 36
35849178 TTTGGAGATA
*
35849188 GGGGTAACCCCGATACAAAGTCTATAGTAATTCTTT
1 GGGGTAACCCCGATACAAAGTCTATAATAATTCTTT
35849224 GGGGTAACCCCGATACAAAGTCTATAATAATTCTTT
1 GGGGTAACCCCGATACAAAGTCTATAATAATTCTTT
35849260 CCCATTTCCA
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 35 1.00
ACGTcount: A:0.32, C:0.19, G:0.18, T:0.31
Consensus pattern (36 bp):
GGGGTAACCCCGATACAAAGTCTATAATAATTCTTT
Found at i:35852348 original size:29 final size:28
Alignment explanation
Indices: 35852311--35852430 Score: 134
Period size: 29 Copynumber: 4.2 Consensus size: 28
35852301 CATGACTGTG
35852311 AATGTGATTTGGGCCTCATGGGCCATATA
1 AATGTGATTTGGGCCT-ATGGGCCATATA
*
35852340 AATATGATTTGGGCCTGATGGGCCATATA
1 AATGTGATTTGGGCCT-ATGGGCCATATA
* ** **
35852369 CATGTGAAGTGGGCCTAATGAACCATATA
1 AATGTGATTTGGGCCT-ATGGGCCATATA
35852398 AATGTGA-TTGGGCCTAGTGGGCCATATA
1 AATGTGATTTGGGCCTA-TGGGCCATATA
*
35852426 CATGT
1 AATGT
35852431 ATGTGAGTTT
Statistics
Matches: 76, Mismatches: 14, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
27 1 0.01
28 20 0.26
29 55 0.72
ACGTcount: A:0.28, C:0.16, G:0.28, T:0.29
Consensus pattern (28 bp):
AATGTGATTTGGGCCTATGGGCCATATA
Found at i:35856357 original size:40 final size:40
Alignment explanation
Indices: 35856274--35856529 Score: 378
Period size: 40 Copynumber: 6.5 Consensus size: 40
35856264 AAGCCAAGTA
* * * *
35856274 CCTTCGGGATTTA-ACCGGATATAGCT-ACTC-CTCGAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* *
35856312 CCTTCGGGACATAGCCCGGATATAGTAACTCGCACCAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
35856352 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
35856392 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
35856432 CCTTCGGGACTTA-CCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
35856471 CCTTCGGGACTTAGCCCGGA-ACTAGTCACTAGCGCAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
35856511 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
35856530 TTATCATCCG
Statistics
Matches: 203, Mismatches: 10, Indels: 8
0.92 0.05 0.04
Matches are distributed among these distances:
38 12 0.06
39 54 0.27
40 137 0.67
ACGTcount: A:0.25, C:0.29, G:0.23, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:35856485 original size:79 final size:80
Alignment explanation
Indices: 35856274--35856529 Score: 378
Period size: 79 Copynumber: 3.2 Consensus size: 80
35856264 AAGCCAAGTA
* * * * *
35856274 CCTTCGGGATTTA-ACCGGATATAGCT-ACTC-CTCGAATGCCTTCGGGACATAGCCCGGATATA
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATA
*
35856336 GTAACTCGCACCAATG
65 GTAACTCGCACAAATG
35856352 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
35856417 TAACTCGCACAAATG
66 TAACTCGCACAAATG
35856432 CCTTCGGGACTTA-CCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGA-ACTA
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATA-TA
* * *
35856495 GTCACTAGCGCAAATG
65 GTAACTCGCACAAATG
35856511 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
35856530 TTATCATCCG
Statistics
Matches: 164, Mismatches: 9, Indels: 8
0.91 0.05 0.04
Matches are distributed among these distances:
78 14 0.09
79 88 0.54
80 62 0.38
ACGTcount: A:0.25, C:0.29, G:0.23, T:0.23
Consensus pattern (80 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
TAACTCGCACAAATG
Found at i:35856509 original size:119 final size:119
Alignment explanation
Indices: 35856274--35856529 Score: 376
Period size: 119 Copynumber: 2.2 Consensus size: 119
35856264 AAGCCAAGTA
* * * *
35856274 CCTTCGGGATTTA-ACCGGATATAGCTACTCCTCGAATGCCTTCGGGACATAGCCCGGATATAGT
1 CCTTCGGGACTTAGCCCGGATATAGCTACTCCACAAATGCCTTCGGGACATAGCCCGGATATAGT
* *
35856338 AACTCGCACCAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
66 AACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATG
*
35856392 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTA-CCCGGATATA
1 CCTTCGGGACTTAGCCCGGATATAGCT-ACTC-CACAAATGCCTTCGGGACATAGCCCGGATATA
* *
35856455 GTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGA-ACTAGTCACTAGCGCAAATG
64 GTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTAGCACAAATG
35856511 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
35856530 TTATCATCCG
Statistics
Matches: 125, Mismatches: 9, Indels: 7
0.89 0.06 0.05
Matches are distributed among these distances:
118 14 0.11
119 93 0.74
120 18 0.14
ACGTcount: A:0.25, C:0.29, G:0.23, T:0.23
Consensus pattern (119 bp):
CCTTCGGGACTTAGCCCGGATATAGCTACTCCACAAATGCCTTCGGGACATAGCCCGGATATAGT
AACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATG
Found at i:35864328 original size:40 final size:40
Alignment explanation
Indices: 35864266--35864523 Score: 315
Period size: 40 Copynumber: 6.5 Consensus size: 40
35864256 AAGCCAAGTA
* * * * *
35864266 CCTTCGGGAGTTA-ACCGGATATAGCT-ACTCCCTCGAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* *
35864305 CCTTCGGGACATAGCCCGGATATAGTAACTCGCACCAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
35864345 CCTTCCGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * * *
35864385 CCTTCGAGACTTAACCTGGATATAGTAACTCACACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
35864425 CCTTTGGGACTTAACCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * * *
35864465 CCTTCGGGACTTAGCCTGGA-ACTAGTCACTAGCGCAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
35864505 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
35864524 TTATCATCCG
Statistics
Matches: 191, Mismatches: 25, Indels: 5
0.86 0.11 0.02
Matches are distributed among these distances:
39 13 0.07
40 178 0.93
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:35869179 original size:69 final size:70
Alignment explanation
Indices: 35869048--35869179 Score: 212
Period size: 69 Copynumber: 1.9 Consensus size: 70
35869038 AGTTTATTAC
* * * *
35869048 TAATTAATTTGCTGCTGTAATGCTGTAAATTATTGGCTGTCCAAATTAGGACAAATTTATGGTAC
1 TAATTAATATGCTGCTGTAATACTGTAAATTATTGGCTGTCCAAATTAGGACAAAATCATGGTAC
35869113 TTAGT
66 TTAGT
*
35869118 TAATTAATATGTTGCTGTAATACT-TAAATTATTGGCTGTCCAAATTAGGACAAAATCATGGT
1 TAATTAATATGCTGCTGTAATACTGTAAATTATTGGCTGTCCAAATTAGGACAAAATCATGGT
35869180 GTTATGTGCT
Statistics
Matches: 57, Mismatches: 5, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
69 36 0.63
70 21 0.37
ACGTcount: A:0.33, C:0.11, G:0.17, T:0.39
Consensus pattern (70 bp):
TAATTAATATGCTGCTGTAATACTGTAAATTATTGGCTGTCCAAATTAGGACAAAATCATGGTAC
TTAGT
Found at i:35870047 original size:39 final size:39
Alignment explanation
Indices: 35869935--35870067 Score: 196
Period size: 39 Copynumber: 3.4 Consensus size: 39
35869925 ATATTTGATG
*
35869935 TATATCCGGACTTAAGGTCCGCAAGCTTCGTGCTGGAAT
1 TATATCCGGACTTAAGGTCCGCAGGCTTCGTGCTGGAAT
* **
35869974 TATATCCGGGCTTAAAGACCCGCAGGCTTCGTGCTGGAAT
1 TATATCCGGACTT-AAGGTCCGCAGGCTTCGTGCTGGAAT
*
35870014 TGTATCCGGACTTAAGGTCCGCAGGCTTCGTGCTGGAAT
1 TATATCCGGACTTAAGGTCCGCAGGCTTCGTGCTGGAAT
35870053 TATATCCAGG-CTTAA
1 TATATCC-GGACTTAA
35870068 ATGTCACACC
Statistics
Matches: 83, Mismatches: 9, Indels: 4
0.86 0.09 0.04
Matches are distributed among these distances:
39 47 0.57
40 36 0.43
ACGTcount: A:0.23, C:0.23, G:0.26, T:0.28
Consensus pattern (39 bp):
TATATCCGGACTTAAGGTCCGCAGGCTTCGTGCTGGAAT
Found at i:35870739 original size:6 final size:6
Alignment explanation
Indices: 35870722--35870794 Score: 60
Period size: 6 Copynumber: 11.8 Consensus size: 6
35870712 TATCATAACT
* * *
35870722 AGAATC ATAATC AGAATC AGAATT AG-GTGAC AGAATC AGAATC AGAATC
1 AGAATC AGAATC AGAATC AGAATC AGAAT--C AGAATC AGAATC AGAATC
*
35870771 AGGTAA-C AGAATC AAAATC AGAAT
1 A-G-AATC AGAATC AGAATC AGAAT
35870795 GTGAATGCAA
Statistics
Matches: 53, Mismatches: 8, Indels: 12
0.73 0.11 0.16
Matches are distributed among these distances:
5 3 0.06
6 42 0.79
7 5 0.09
8 3 0.06
ACGTcount: A:0.49, C:0.14, G:0.18, T:0.19
Consensus pattern (6 bp):
AGAATC
Found at i:35870758 original size:25 final size:25
Alignment explanation
Indices: 35870730--35870794 Score: 103
Period size: 25 Copynumber: 2.6 Consensus size: 25
35870720 CTAGAATCAT
* *
35870730 AATCAGAATCAGAATTAGGTGACAG
1 AATCAGAATCAGAATCAGGTAACAG
35870755 AATCAGAATCAGAATCAGGTAACAG
1 AATCAGAATCAGAATCAGGTAACAG
*
35870780 AATCAAAATCAGAAT
1 AATCAGAATCAGAAT
35870795 GTGAATGCAA
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
25 37 1.00
ACGTcount: A:0.49, C:0.14, G:0.18, T:0.18
Consensus pattern (25 bp):
AATCAGAATCAGAATCAGGTAACAG
Found at i:35870973 original size:27 final size:26
Alignment explanation
Indices: 35870931--35871032 Score: 105
Period size: 27 Copynumber: 3.8 Consensus size: 26
35870921 GCTCAGTTAT
* * *
35870931 CAGATTTTGTGATAGAGTCACCAGATA
1 CAGATATTGTGGTAGAGCCACCAGA-A
35870958 CAGATATTGTGGTAGAGCCACCAGAA
1 CAGATATTGTGGTAGAGCCACCAGAA
* *
35870984 CAGATATTTGTGGCATAGCCACCAGAAA
1 CAGATA-TTGTGGTAGAGCCACCAG-AA
* * *
35871012 CAGATAATGTGGCAAAGCCAC
1 CAGATATTGTGGTAGAGCCAC
35871033 TTAACAGAAT
Statistics
Matches: 66, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
26 7 0.11
27 51 0.77
28 8 0.12
ACGTcount: A:0.35, C:0.20, G:0.24, T:0.22
Consensus pattern (26 bp):
CAGATATTGTGGTAGAGCCACCAGAA
Found at i:35871219 original size:22 final size:22
Alignment explanation
Indices: 35871191--35871255 Score: 78
Period size: 22 Copynumber: 3.0 Consensus size: 22
35871181 GCAAATATGT
*
35871191 TTGGCACACAGCCATAATCAGG
1 TTGGCACAAAGCCATAATCAGG
* *
35871213 TTGGCACAGAGCCAT-ATGTAGG
1 TTGGCACAAAGCCATAAT-CAGG
*
35871235 TTGACACAAAGCCATAATCAG
1 TTGGCACAAAGCCATAATCAG
35871256 AAGGCTTTAA
Statistics
Matches: 36, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
21 2 0.06
22 32 0.89
23 2 0.06
ACGTcount: A:0.34, C:0.23, G:0.23, T:0.20
Consensus pattern (22 bp):
TTGGCACAAAGCCATAATCAGG
Found at i:35871738 original size:27 final size:27
Alignment explanation
Indices: 35871681--35871952 Score: 321
Period size: 27 Copynumber: 10.1 Consensus size: 27
35871671 GGGGCAAAAT
* * * *
35871681 GGTAATTTTACCCCACA-AGGTATCTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
35871707 GGTAATTCCACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
35871734 AGTAATTCTACCATACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
35871761 GGTAATTCTACCCTACATGGGTATTGC
1 GGTAATTCTACCCTACAGGGGTATTTC
* ** *
35871788 GATAATTCTACCCTACAAAGGTATTGC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
35871815 GATAATTCTACCCTACATGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
35871842 GGTAATTCTACCCTACAGGGGTATTCC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
35871869 GGTAATTCTACCCTACAGGGGTATTCC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
35871896 GGTAATTCTACCCTACATGGGTATTCC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
35871923 GATATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
35871950 GGT
1 GGT
35871953 CATTTTGTAA
Statistics
Matches: 215, Mismatches: 30, Indels: 1
0.87 0.12 0.00
Matches are distributed among these distances:
26 14 0.07
27 201 0.93
ACGTcount: A:0.25, C:0.23, G:0.19, T:0.33
Consensus pattern (27 bp):
GGTAATTCTACCCTACAGGGGTATTTC
Found at i:35872341 original size:27 final size:27
Alignment explanation
Indices: 35871977--35872334 Score: 371
Period size: 27 Copynumber: 13.3 Consensus size: 27
35871967 ATGGTAAAAC
* * * *
35871977 GGTAATTCTATAAATCAAGGGTACTTT
1 GGTAATTTTACAAACCAAGGGTATTTT
** * *
35872004 GGTAATTTTACAAGTCGAGGGTATTTC
1 GGTAATTTTACAAACCAAGGGTATTTT
** ***** *
35872031 AATAATTTTACAGGTTGAGGGTATTTC
1 GGTAATTTTACAAACCAAGGGTATTTT
* * **
35872058 AGTAATTTCACAAA-TTAGGGATATTTT
1 GGTAATTTTACAAACCAAGGG-TATTTT
* *
35872085 GGTAATTTT-CAAACTAGGGGTATTTT
1 GGTAATTTTACAAACCAAGGGTATTTT
* *
35872111 GATAATTTTACAAACCAGGGGTATTTT
1 GGTAATTTTACAAACCAAGGGTATTTT
35872138 GGTAATTTTACAAACCAAGGGTATTTT
1 GGTAATTTTACAAACCAAGGGTATTTT
* *
35872165 GGTAATTTTATAAACAAAGGGTATTTT
1 GGTAATTTTACAAACCAAGGGTATTTT
*
35872192 AGTAATTTTACAAACCAAGGGTATTTT
1 GGTAATTTTACAAACCAAGGGTATTTT
* **
35872219 TGTAATTTTGTAAACCAAGGGTATTTT
1 GGTAATTTTACAAACCAAGGGTATTTT
35872246 GGTAATTTTACAAACC-AGGAGTATTTT
1 GGTAATTTTACAAACCAAGG-GTATTTT
* *
35872273 GGTGATTTTATAAACCAAGGGTATTTT
1 GGTAATTTTACAAACCAAGGGTATTTT
* *
35872300 CGTAATTTTACAAACCAGGGGTATTTT
1 GGTAATTTTACAAACCAAGGGTATTTT
35872327 GGTAATTT
1 GGTAATTT
35872335 GGTAAACTAA
Statistics
Matches: 284, Mismatches: 42, Indels: 10
0.85 0.12 0.03
Matches are distributed among these distances:
26 26 0.09
27 255 0.90
28 3 0.01
ACGTcount: A:0.32, C:0.09, G:0.20, T:0.39
Consensus pattern (27 bp):
GGTAATTTTACAAACCAAGGGTATTTT
Found at i:35873228 original size:39 final size:39
Alignment explanation
Indices: 35873169--35873309 Score: 176
Period size: 39 Copynumber: 3.6 Consensus size: 39
35873159 TGTTACATTA
* * * *
35873169 AAGACCCGCAGGCTTCGTGCTGGAATTGTATCCGGACTT
1 AAGATCCGCAGGCTTCGTGCTGGTACTATATCCGGACTT
35873208 AAGATCCGCAGGCTTCGTGCTGGTACTATATCCGGACTT
1 AAGATCCGCAGGCTTCGTGCTGGTACTATATCCGGACTT
* * *
35873247 AAGGTCCGCAGGCTTCGTACTGGTACTATATCCGGGCTT
1 AAGATCCGCAGGCTTCGTGCTGGTACTATATCCGGACTT
* * *
35873286 AA-AGTCCGTAGGCTTTGTGTTGGT
1 AAGA-TCCGCAGGCTTCGTGCTGGT
35873310 GATTGAATTT
Statistics
Matches: 89, Mismatches: 12, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
39 89 1.00
ACGTcount: A:0.19, C:0.23, G:0.28, T:0.29
Consensus pattern (39 bp):
AAGATCCGCAGGCTTCGTGCTGGTACTATATCCGGACTT
Found at i:35874953 original size:16 final size:16
Alignment explanation
Indices: 35874932--35874974 Score: 68
Period size: 16 Copynumber: 2.7 Consensus size: 16
35874922 GTAGATCAGC
35874932 AAAAGCTGAAATACCG
1 AAAAGCTGAAATACCG
*
35874948 AAAAGCTGAAATGCCG
1 AAAAGCTGAAATACCG
*
35874964 AAAAGTTGAAA
1 AAAAGCTGAAA
35874975 GTTTGGCTAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 25 1.00
ACGTcount: A:0.51, C:0.14, G:0.21, T:0.14
Consensus pattern (16 bp):
AAAAGCTGAAATACCG
Found at i:35875239 original size:29 final size:29
Alignment explanation
Indices: 35875190--35875301 Score: 136
Period size: 29 Copynumber: 3.9 Consensus size: 29
35875180 CATGATTGTG
*
35875190 AATGTGATTTGGTCCTAATGGGCCATATA
1 AATGTGATTTGGGCCTAATGGGCCATATA
*
35875219 AATGTGATTTGGGCCTGATGGGCCATATA
1 AATGTGATTTGGGCCTAATGGGCCATATA
* * * * *
35875248 CATGTGAATTGGGCTTAATGAGTCATATA
1 AATGTGATTTGGGCCTAATGGGCCATATA
* *
35875277 AATGTGA-TTCGGCCTAGTGGGCCAT
1 AATGTGATTTGGGCCTAATGGGCCAT
35875302 GTACAGGTAT
Statistics
Matches: 69, Mismatches: 14, Indels: 1
0.82 0.17 0.01
Matches are distributed among these distances:
28 13 0.19
29 56 0.81
ACGTcount: A:0.26, C:0.14, G:0.28, T:0.32
Consensus pattern (29 bp):
AATGTGATTTGGGCCTAATGGGCCATATA
Found at i:35886566 original size:116 final size:116
Alignment explanation
Indices: 35886270--35886569 Score: 519
Period size: 116 Copynumber: 2.6 Consensus size: 116
35886260 GTGTTGCTTC
*
35886270 CCACGATCTCTGTTAGAATACCCCAACTGAAGTTGTTGGACGGTTATAATAATCTTTTGATTTCG
1 CCACGATCTCTGTTAGAATACCCCAACTGAAGTTGTTGGACGGTTATAATAATCTTTTGATTTCT
*
35886335 TTGAATAGGAATGATAGGGTTCACTCATTGTCCTCTTTCTTGAATCTCTAA
66 TTGAAGAGGAATGATAGGGTTCACTCATTGTCCTCTTTCTTGAATCTCTAA
* *
35886386 CCACGGTCTCTGTTAGAATACCCCAACTGAAGTTGTTAGACGGTTATAATAATCTTTTGATTTCT
1 CCACGATCTCTGTTAGAATACCCCAACTGAAGTTGTTGGACGGTTATAATAATCTTTTGATTTCT
*
35886451 TTGAAGAGGAATGATAGGGTTTACTCATTGTCCTCTTTCTTGAATCTCTAA
66 TTGAAGAGGAATGATAGGGTTCACTCATTGTCCTCTTTCTTGAATCTCTAA
* * * *
35886502 CCACGATCTCTGTTAGAATACCCCAACTGAAGCTGTCGGATGGTTATAATAATCTTTTAATTTCT
1 CCACGATCTCTGTTAGAATACCCCAACTGAAGTTGTTGGACGGTTATAATAATCTTTTGATTTCT
35886567 TTG
66 TTG
35886570 CTAAGTTCTT
Statistics
Matches: 173, Mismatches: 11, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
116 173 1.00
ACGTcount: A:0.26, C:0.19, G:0.18, T:0.37
Consensus pattern (116 bp):
CCACGATCTCTGTTAGAATACCCCAACTGAAGTTGTTGGACGGTTATAATAATCTTTTGATTTCT
TTGAAGAGGAATGATAGGGTTCACTCATTGTCCTCTTTCTTGAATCTCTAA
Found at i:35893304 original size:46 final size:45
Alignment explanation
Indices: 35893254--35893380 Score: 132
Period size: 47 Copynumber: 2.7 Consensus size: 45
35893244 CATCATGTAC
* * *
35893254 CCGATGCATGTCCCAAACATTTCTTACACTAGCTCTCGTCTCAA-T-A
1 CCGATGCATGTCCCAGACATGTCTTACACTAGCTCTC--AT-AAGTGA
* * *
35893300 CCGATGCAATGTCCTAGACATGGTCTTACACTGGCTCTCATAATGTGG
1 CCGATGC-ATGTCCCAGACAT-GTCTTACACTAGCTCTCATAA-GTGA
35893348 CCGATGCATGTCCCAGACATGTCTTACACTAGC
1 CCGATGCATGTCCCAGACATGTCTTACACTAGC
35893381 ACACATATCA
Statistics
Matches: 68, Mismatches: 8, Indels: 10
0.79 0.09 0.12
Matches are distributed among these distances:
45 2 0.03
46 20 0.29
47 24 0.35
48 22 0.32
ACGTcount: A:0.24, C:0.30, G:0.17, T:0.28
Consensus pattern (45 bp):
CCGATGCATGTCCCAGACATGTCTTACACTAGCTCTCATAAGTGA
Found at i:35901676 original size:40 final size:40
Alignment explanation
Indices: 35901592--35901775 Score: 196
Period size: 40 Copynumber: 4.6 Consensus size: 40
35901582 TTGAATGCTG
* * * *
35901592 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACT-AT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTATTAAT
** *
35901631 ATCCGGACTAAGAT-CCGAAGGTATTTGTGCGAGTTATTAAT
1 -TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTTATTAAT
* * *
35901672 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAGATACTAAT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATTAAT
* *
35901712 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTT-TTAAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATT-AAT
35901752 TCCGGGTTAAGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
35901776 GAATGAGTTA
Statistics
Matches: 123, Mismatches: 16, Indels: 10
0.83 0.11 0.07
Matches are distributed among these distances:
39 2 0.02
40 111 0.90
41 10 0.08
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.28
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATTAAT
Found at i:35901729 original size:80 final size:81
Alignment explanation
Indices: 35901592--35901772 Score: 221
Period size: 80 Copynumber: 2.3 Consensus size: 81
35901582 TTGAATGCTG
* * *
35901592 TCCGGGCTAAGTCCCGAAGG-CTTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGTATT
1 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
* *
35901656 TGTGCGAGTTATT-AAT
66 CGTGCGAGTT-TTAAAA
**
35901672 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCG-AGAT-ACTA-ATTCCGGGTTAAG-TCCCGAAGGC
1 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAG-TGACTATA-TCCGGACTAAGAT-CCGAAGGC
35901733 ATTCGTGCGAGTTTTAAAA
63 ATTCGTGCGAGTTTTAAAA
35901752 TCCGGGTTAAGTCCCGAAGGC
1 TCCGGGTTAAGTCCCGAAGGC
35901773 ATTGAATGAG
Statistics
Matches: 89, Mismatches: 7, Indels: 10
0.84 0.07 0.09
Matches are distributed among these distances:
79 4 0.04
80 76 0.85
81 9 0.10
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.28
Consensus pattern (81 bp):
TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
CGTGCGAGTTTTAAAA
Found at i:35901796 original size:39 final size:38
Alignment explanation
Indices: 35901673--35901822 Score: 122
Period size: 40 Copynumber: 3.8 Consensus size: 38
35901663 GTTATTAATT
* ** * *
35901673 CCGGGTTAAGTCCCGAAGGCCTTTGTGCGAGATACTAATT
1 CCGGGTTAAGTCCCGAAGG-CATTGAACGAGTTACT-ATA
** * *
35901713 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTT-TTAAAA
1 CCGGGTTAAGTCCCGAAGGCATT-GAACGAGTTACT-ATA
*
35901752 TCCGGGTTAAGTCCCGAAGGCATTGAATGAGTTACTATGA
1 -CCGGGTTAAGTCCCGAAGGCATTGAACGAGTTACTAT-A
* *
35901792 CCGGGCTATGTCCCGAAGGCACTTGAACGAG
1 CCGGGTTAAGTCCCGAAGGCA-TTGAACGAG
35901823 GAGCTATATC
Statistics
Matches: 92, Mismatches: 13, Indels: 10
0.80 0.11 0.09
Matches are distributed among these distances:
39 32 0.35
40 60 0.65
ACGTcount: A:0.25, C:0.22, G:0.29, T:0.25
Consensus pattern (38 bp):
CCGGGTTAAGTCCCGAAGGCATTGAACGAGTTACTATA
Found at i:35909576 original size:40 final size:40
Alignment explanation
Indices: 35909492--35909675 Score: 196
Period size: 40 Copynumber: 4.6 Consensus size: 40
35909482 TTGAATGCTG
* * * *
35909492 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACT-AT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTATTAAT
** *
35909531 ATCCGGACTAAGAT-CCGAAGGTATTTGTGCGAGTTATTAAT
1 -TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTTATTAAT
* * *
35909572 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAGATACTAAT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATTAAT
* *
35909612 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTT-TTAAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATT-AAT
35909652 TCCGGGTTAAGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
35909676 GAATGAGTTA
Statistics
Matches: 123, Mismatches: 16, Indels: 10
0.83 0.11 0.07
Matches are distributed among these distances:
39 2 0.02
40 111 0.90
41 10 0.08
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.28
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATTAAT
Found at i:35909629 original size:80 final size:81
Alignment explanation
Indices: 35909492--35909672 Score: 221
Period size: 80 Copynumber: 2.3 Consensus size: 81
35909482 TTGAATGCTG
* * *
35909492 TCCGGGCTAAGTCCCGAAGG-CTTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGTATT
1 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
* *
35909556 TGTGCGAGTTATT-AAT
66 CGTGCGAGTT-TTAAAA
**
35909572 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCG-AGAT-ACTA-ATTCCGGGTTAAG-TCCCGAAGGC
1 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAG-TGACTATA-TCCGGACTAAGAT-CCGAAGGC
35909633 ATTCGTGCGAGTTTTAAAA
63 ATTCGTGCGAGTTTTAAAA
35909652 TCCGGGTTAAGTCCCGAAGGC
1 TCCGGGTTAAGTCCCGAAGGC
35909673 ATTGAATGAG
Statistics
Matches: 89, Mismatches: 7, Indels: 10
0.84 0.07 0.09
Matches are distributed among these distances:
79 4 0.04
80 76 0.85
81 9 0.10
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.28
Consensus pattern (81 bp):
TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
CGTGCGAGTTTTAAAA
Found at i:35909696 original size:39 final size:38
Alignment explanation
Indices: 35909573--35909722 Score: 122
Period size: 40 Copynumber: 3.8 Consensus size: 38
35909563 GTTATTAATT
* ** * *
35909573 CCGGGTTAAGTCCCGAAGGCCTTTGTGCGAGATACTAATT
1 CCGGGTTAAGTCCCGAAGG-CATTGAACGAGTTACT-ATA
** * *
35909613 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTT-TTAAAA
1 CCGGGTTAAGTCCCGAAGGCATT-GAACGAGTTACT-ATA
*
35909652 TCCGGGTTAAGTCCCGAAGGCATTGAATGAGTTACTATGA
1 -CCGGGTTAAGTCCCGAAGGCATTGAACGAGTTACTAT-A
* *
35909692 CCGGGCTATGTCCCGAAGGCACTTGAACGAG
1 CCGGGTTAAGTCCCGAAGGCA-TTGAACGAG
35909723 GAGCTATATC
Statistics
Matches: 92, Mismatches: 13, Indels: 10
0.80 0.11 0.09
Matches are distributed among these distances:
39 32 0.35
40 60 0.65
ACGTcount: A:0.25, C:0.22, G:0.29, T:0.25
Consensus pattern (38 bp):
CCGGGTTAAGTCCCGAAGGCATTGAACGAGTTACTATA
Found at i:35912148 original size:51 final size:51
Alignment explanation
Indices: 35912086--35912184 Score: 198
Period size: 51 Copynumber: 1.9 Consensus size: 51
35912076 TTAAGATCTG
35912086 TATTGATGTATTACTTACATATAAACTTACATCTCATTTAATATCAAGTAA
1 TATTGATGTATTACTTACATATAAACTTACATCTCATTTAATATCAAGTAA
35912137 TATTGATGTATTACTTACATATAAACTTACATCTCATTTAATATCAAG
1 TATTGATGTATTACTTACATATAAACTTACATCTCATTTAATATCAAG
35912185 GCAATAACAT
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
51 48 1.00
ACGTcount: A:0.38, C:0.14, G:0.06, T:0.41
Consensus pattern (51 bp):
TATTGATGTATTACTTACATATAAACTTACATCTCATTTAATATCAAGTAA
Found at i:35914161 original size:46 final size:46
Alignment explanation
Indices: 35913980--35914294 Score: 243
Period size: 46 Copynumber: 6.7 Consensus size: 46
35913970 GGGTATAATA
* * * *
35913980 CCGATGCCATGTCCCAAACGTGGTCTTACACTGGCTCTCA-C-GTTAAG
1 CCGATG-CATGTCCCAGACAT-GTCTTACACTAGCTCTCATCTG-TAGG
** * * * * *
35914027 TTGATGCCATGTCCTAGACATGGTCTTACACT-GATCTCATGTATCCGTG
1 CCGATG-CATGTCCCAGACAT-GTCTTACACTAGCTCTCATCTGT-AG-G
* * *
35914076 CCGATGCCATGTCCCAGACATGGTCTTACACT-GAT-ACATCATGTA-C
1 CCGATG-CATGTCCCAGACAT-GTCTTACACTAGCTCTCATC-TGTAGG
35914122 CCGATGCATGTCCCAGACATGTCTTACACTAGCT-TACATCTCG-AGG
1 CCGATGCATGTCCCAGACATGTCTTACACTAGCTCT-CATCT-GTAGG
* ** *
35914168 CCGATGCATGTCCCAAACATGTCTTACACTAGCTCTCATCTCAATG
1 CCGATGCATGTCCCAGACATGTCTTACACTAGCTCTCATCTGTAGG
* * *
35914214 CCGATGCCATGTCCCAGACATGGTCTTACATTGGCTCTCATAATGT-GG
1 CCGATG-CATGTCCCAGACAT-GTCTTACACTAGCTCTCAT-CTGTAGG
35914262 CCGATGCATGTCCCAGACATGTCTTACACTAGC
1 CCGATGCATGTCCCAGACATGTCTTACACTAGC
35914295 ACACATATCA
Statistics
Matches: 221, Mismatches: 33, Indels: 29
0.78 0.12 0.10
Matches are distributed among these distances:
44 10 0.05
45 18 0.08
46 74 0.33
47 56 0.25
48 27 0.12
49 36 0.16
ACGTcount: A:0.23, C:0.30, G:0.19, T:0.28
Consensus pattern (46 bp):
CCGATGCATGTCCCAGACATGTCTTACACTAGCTCTCATCTGTAGG
Found at i:35914266 original size:94 final size:93
Alignment explanation
Indices: 35913980--35914294 Score: 303
Period size: 94 Copynumber: 3.4 Consensus size: 93
35913970 GGGTATAATA
* * ** *
35913980 CCGATGCCATGTCCCAAACGTGGTCTTACACTGGCTCTCA-CGTTAAGTTGATGCCATGTCCTAG
1 CCGATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATC--TAAGCCGATGCCATGTCCCAG
*
35914044 ACATGGTCTTACACTGATCTCATGTATCCGT-G
64 ACATGGTCTTACACTGCTCTCA--TAT-CGTGG
* * * *
35914076 CCGATGCCATGTCCCAGACATGGTCTTACACT-GATACATCATGT-ACCCGATG-CATGTCCCAG
1 CCGATGCCATGTCCCAAACATGGTCTTACACTAGCT-C-TCATCTAAGCCGATGCCATGTCCCAG
* *
35914138 ACAT-GTCTTACACTAGCT-TACATCTCGAGG
64 ACATGGTCTTACACT-GCTCT-CATATCGTGG
35914168 CCGATG-CATGTCCCAAACAT-GTCTTACACTAGCTCTCATCTCAATGCCGATGCCATGTCCCAG
1 CCGATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATCT-AA-GCCGATGCCATGTCCCAG
*
35914231 ACATGGTCTTACATTGGCTCTCATAAT-GTGG
64 ACATGGTCTTACACT-GCTCTCAT-ATCGTGG
*
35914262 CCGATG-CATGTCCCAGACAT-GTCTTACACTAGC
1 CCGATGCCATGTCCCAAACATGGTCTTACACTAGC
35914295 ACACATATCA
Statistics
Matches: 185, Mismatches: 20, Indels: 30
0.79 0.09 0.13
Matches are distributed among these distances:
89 5 0.03
90 11 0.06
91 18 0.10
92 15 0.08
93 25 0.14
94 67 0.36
95 9 0.05
96 32 0.17
97 3 0.02
ACGTcount: A:0.23, C:0.30, G:0.19, T:0.28
Consensus pattern (93 bp):
CCGATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATCTAAGCCGATGCCATGTCCCAGAC
ATGGTCTTACACTGCTCTCATATCGTGG
Found at i:35930194 original size:28 final size:28
Alignment explanation
Indices: 35930153--35930207 Score: 92
Period size: 28 Copynumber: 2.0 Consensus size: 28
35930143 TAAGTAAGGA
*
35930153 AACTTTATCATTATTATGTGTGGAATGC
1 AACTTTATCATTATTATATGTGGAATGC
*
35930181 AACTTTATCGTTATTATATGTGGAATG
1 AACTTTATCATTATTATATGTGGAATG
35930208 ATTGATTTTG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 25 1.00
ACGTcount: A:0.29, C:0.09, G:0.18, T:0.44
Consensus pattern (28 bp):
AACTTTATCATTATTATATGTGGAATGC
Found at i:35930473 original size:48 final size:48
Alignment explanation
Indices: 35930337--35930606 Score: 249
Period size: 48 Copynumber: 5.6 Consensus size: 48
35930327 TATGTTTGCT
* * * **
35930337 AGTGTAAGACCATGTCTGGGACATGGCATCGACCACATTATGAGAGCC
1 AGTGTAAGACCATGTTTGGAACATGGCATCGACAATGTTATGAGAGCC
* * * * * *
35930385 ATTGTAAGA-CATGTCTGGGACATGGCATCAGCCAA-ATTATGGGAGCC
1 AGTGTAAGACCATGTTTGGAACATGGCATC-GACAATGTTATGAGAGCC
* * *
35930432 AATGTAAGACCATGTTTGGAACATAGCATCAACAATGTTATGCA-AGCC
1 AGTGTAAGACCATGTTTGGAACATGGCATCGACAATGTTATG-AGAGCC
* ** *
35930480 AGTGTAAGACCATATTTGGAACATGGCATCGGTAATGTTATGAGAGCT
1 AGTGTAAGACCATGTTTGGAACATGGCATCGACAATGTTATGAGAGCC
* * * * *
35930528 TGTGTAAGATCATGTTTGGAACATGGCATCGGCAATGTTACGAAAGCC
1 AGTGTAAGACCATGTTTGGAACATGGCATCGACAATGTTATGAGAGCC
** ** *
35930576 AGAATAAGACCATGCATGGGACATGGCATCG
1 AGTGTAAGACCATGTTTGGAACATGGCATCG
35930607 GTATTGAGAC
Statistics
Matches: 184, Mismatches: 33, Indels: 10
0.81 0.15 0.04
Matches are distributed among these distances:
47 43 0.23
48 141 0.77
ACGTcount: A:0.32, C:0.18, G:0.26, T:0.24
Consensus pattern (48 bp):
AGTGTAAGACCATGTTTGGAACATGGCATCGACAATGTTATGAGAGCC
Found at i:35930648 original size:96 final size:96
Alignment explanation
Indices: 35930437--35930638 Score: 233
Period size: 96 Copynumber: 2.1 Consensus size: 96
35930427 GAGCCAATGT
* * * ** **
35930437 AAGACCATGTTTGGAACATAGCATCAACAATGTTATGCAAGCCAGTGTAAGACCATATTTGGAAC
1 AAGACCATGTTTGGAACATGGCATCAACAATGTTACGAAAGCCAGAATAAGACCATACATGGAAC
** * * * *
35930502 ATGGCATCGGTAATGTTATGAGAGCTTGTGT
66 ATGGCATCGGTAATGAGACGAAAGCTAGTGC
* ** * *
35930533 AAGATCATGTTTGGAACATGGCATCGGCAATGTTACGAAAGCCAGAATAAGACCATGCATGGGAC
1 AAGACCATGTTTGGAACATGGCATCAACAATGTTACGAAAGCCAGAATAAGACCATACATGGAAC
*
35930598 ATGGCATCGGTATTGAGACGAAAGCTAGTGC
66 ATGGCATCGGTAATGAGACGAAAGCTAGTGC
35930629 AAGACCATGT
1 AAGACCATGT
35930639 CTAGGACATG
Statistics
Matches: 86, Mismatches: 20, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
96 86 1.00
ACGTcount: A:0.33, C:0.17, G:0.26, T:0.24
Consensus pattern (96 bp):
AAGACCATGTTTGGAACATGGCATCAACAATGTTACGAAAGCCAGAATAAGACCATACATGGAAC
ATGGCATCGGTAATGAGACGAAAGCTAGTGC
Found at i:35933603 original size:12 final size:12
Alignment explanation
Indices: 35933586--35933614 Score: 58
Period size: 12 Copynumber: 2.4 Consensus size: 12
35933576 CGAGACCTTG
35933586 GATTTACCTCTA
1 GATTTACCTCTA
35933598 GATTTACCTCTA
1 GATTTACCTCTA
35933610 GATTT
1 GATTT
35933615 TAGGGTAAGT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.24, C:0.21, G:0.10, T:0.45
Consensus pattern (12 bp):
GATTTACCTCTA
Found at i:35936006 original size:16 final size:16
Alignment explanation
Indices: 35935981--35936011 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
35935971 TTTAAGTGAA
35935981 TTGAAATACTATATGT
1 TTGAAATACTATATGT
*
35935997 TTGAATTACTATATG
1 TTGAAATACTATATG
35936012 ATATGGTTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.06, G:0.13, T:0.45
Consensus pattern (16 bp):
TTGAAATACTATATGT
Found at i:35937908 original size:23 final size:22
Alignment explanation
Indices: 35937870--35937930 Score: 90
Period size: 21 Copynumber: 2.8 Consensus size: 22
35937860 GACACATAAA
*
35937870 GTGCCT-AAAACGACACACGAG
1 GTGCCTGAATACGACACACGAG
35937891 GTGCCTG-ATACGACACACGAG
1 GTGCCTGAATACGACACACGAG
35937912 GTGCCTGAAATACGACACA
1 GTGCCTG-AATACGACACA
35937931 TAAAGTGCCT
Statistics
Matches: 36, Mismatches: 1, Indels: 4
0.88 0.02 0.10
Matches are distributed among these distances:
21 26 0.72
23 10 0.28
ACGTcount: A:0.34, C:0.28, G:0.25, T:0.13
Consensus pattern (22 bp):
GTGCCTGAATACGACACACGAG
Found at i:35937938 original size:23 final size:23
Alignment explanation
Indices: 35937860--35937942 Score: 84
Period size: 21 Copynumber: 3.8 Consensus size: 23
35937850 ATCAGTATAT
*
35937860 GACACATAAAGTGCCT-AAA-AC
1 GACACACAAAGTGCCTGAAATAC
* *
35937881 GACACACGAGGTGCCTG--ATAC
1 GACACACAAAGTGCCTGAAATAC
* *
35937902 GACACACGAGGTGCCTGAAATAC
1 GACACACAAAGTGCCTGAAATAC
*
35937925 GACACATAAAGTGCCTGA
1 GACACACAAAGTGCCTGA
35937943 TCAGTAAAGT
Statistics
Matches: 52, Mismatches: 6, Indels: 6
0.81 0.09 0.09
Matches are distributed among these distances:
20 1 0.02
21 32 0.62
23 19 0.37
ACGTcount: A:0.37, C:0.25, G:0.23, T:0.14
Consensus pattern (23 bp):
GACACACAAAGTGCCTGAAATAC
Found at i:35939494 original size:22 final size:22
Alignment explanation
Indices: 35939459--35939513 Score: 74
Period size: 22 Copynumber: 2.5 Consensus size: 22
35939449 TGCTCGAATG
* *
35939459 CTTTTTGTTCTCTTTTTTTTATT
1 CTTTTTGTT-TCTTTTCTTTACT
35939482 CTTTTTGTTTCTTTTCTTTACT
1 CTTTTTGTTTCTTTTCTTTACT
*
35939504 CTGTTTGTTT
1 CTTTTTGTTT
35939514 TATTCACTTT
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
22 20 0.69
23 9 0.31
ACGTcount: A:0.04, C:0.15, G:0.07, T:0.75
Consensus pattern (22 bp):
CTTTTTGTTTCTTTTCTTTACT
Found at i:35945798 original size:21 final size:21
Alignment explanation
Indices: 35945772--35945851 Score: 61
Period size: 21 Copynumber: 3.7 Consensus size: 21
35945762 TGATCAGTAT
*
35945772 ACGACACATAAAGTGCCTAAA
1 ACGACACACAAAGTGCCTAAA
* * * *
35945793 ACGACACACGAGGTGCCTGAT
1 ACGACACACAAAGTGCCTAAA
* *
35945814 ACGACACACGAGGTGCCTGAAA
1 ACGACACACAAAGTGCCT-AAA
* *
35945836 TATGACACATAAAGTG
1 -ACGACACACAAAGTG
35945852 TCTGATCAGT
Statistics
Matches: 46, Mismatches: 11, Indels: 2
0.78 0.19 0.03
Matches are distributed among these distances:
21 34 0.74
22 1 0.02
23 11 0.24
ACGTcount: A:0.39, C:0.24, G:0.23, T:0.15
Consensus pattern (21 bp):
ACGACACACAAAGTGCCTAAA
Found at i:35945844 original size:23 final size:21
Alignment explanation
Indices: 35945770--35945833 Score: 83
Period size: 21 Copynumber: 3.0 Consensus size: 21
35945760 CCTGATCAGT
** * *
35945770 ATACGACACATAAAGTGCCTA
1 ATACGACACACGAGGTGCCTG
*
35945791 AAACGACACACGAGGTGCCTG
1 ATACGACACACGAGGTGCCTG
35945812 ATACGACACACGAGGTGCCTG
1 ATACGACACACGAGGTGCCTG
35945833 A
1 A
35945834 AATATGACAC
Statistics
Matches: 37, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 37 1.00
ACGTcount: A:0.36, C:0.27, G:0.23, T:0.14
Consensus pattern (21 bp):
ATACGACACACGAGGTGCCTG
Found at i:35947407 original size:22 final size:22
Alignment explanation
Indices: 35947369--35947423 Score: 65
Period size: 22 Copynumber: 2.5 Consensus size: 22
35947359 TGCTCGAATG
* *
35947369 CTTTCTGTTCTCTTTTCTCTATT
1 CTTTTTGTT-TCTTTTCTCTACT
*
35947392 CTTTTTGTTTCTTTTCTTTACT
1 CTTTTTGTTTCTTTTCTCTACT
*
35947414 CTGTTTGTTT
1 CTTTTTGTTT
35947424 TATTCACTTT
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
22 20 0.71
23 8 0.29
ACGTcount: A:0.04, C:0.20, G:0.07, T:0.69
Consensus pattern (22 bp):
CTTTTTGTTTCTTTTCTCTACT
Found at i:35954778 original size:63 final size:63
Alignment explanation
Indices: 35954679--35954807 Score: 215
Period size: 63 Copynumber: 2.0 Consensus size: 63
35954669 CAACCTGATT
*
35954679 TATAACTTAAATTTTGTAACTCAAACTCTATTAAGATGCGCCTCATT-CTCGATGGGATAAGAA
1 TATAACTTAAATTTGGTAACTCAAACTCTATTAAGATGCGCCTCATTCCT-GATGGGATAAGAA
* *
35954742 TATAACTTAAATTTGGTAATTCAAACTCTATTAAGATGCGCCTCATTCCTGATGTGATAAGAA
1 TATAACTTAAATTTGGTAACTCAAACTCTATTAAGATGCGCCTCATTCCTGATGGGATAAGAA
35954805 TAT
1 TAT
35954808 CTCCATGTGA
Statistics
Matches: 62, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
63 60 0.97
64 2 0.03
ACGTcount: A:0.35, C:0.16, G:0.14, T:0.35
Consensus pattern (63 bp):
TATAACTTAAATTTGGTAACTCAAACTCTATTAAGATGCGCCTCATTCCTGATGGGATAAGAA
Found at i:35955868 original size:41 final size:35
Alignment explanation
Indices: 35955785--35955858 Score: 132
Period size: 35 Copynumber: 2.1 Consensus size: 35
35955775 AGACTAAGAG
35955785 GATTGAAGGCCAGGGGGAGTATGGAAAGTGATTCA
1 GATTGAAGGCCAGGGGGAGTATGGAAAGTGATTCA
35955820 GATTGAAGGCCATGGGGG-GTATGGAAAGTGATTCA
1 GATTGAAGGCCA-GGGGGAGTATGGAAAGTGATTCA
35955855 GATT
1 GATT
35955859 CAAATTGAAG
Statistics
Matches: 38, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
35 33 0.87
36 5 0.13
ACGTcount: A:0.30, C:0.08, G:0.39, T:0.23
Consensus pattern (35 bp):
GATTGAAGGCCAGGGGGAGTATGGAAAGTGATTCA
Found at i:35962518 original size:47 final size:48
Alignment explanation
Indices: 35962445--35962763 Score: 182
Period size: 47 Copynumber: 6.7 Consensus size: 48
35962435 GGGTATAATA
* *
35962445 TCGATGCCATGTCCCAAACATAGTCTTACACTAGCTCATC-CATCAAG
1 TCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCATCACATCAAG
* * * *
35962492 TCGATGCCATGTCCCAGACTTGGTCTTACA-TTGACT-ATCGAAATCGAG
1 TCGATGCCATGTCCCAGACATGGTCTTACACTAG-CTCATC-ACATCAAG
* ** * * * *
35962540 GCTGACACCATGTCCTAGAAATGGTCTTACATTAGCTC-TCACAT-ATCCG
1 TC-GATGCCATGTCCCAGACATGGTCTTACACTAGCTCATCACATCA--AG
* * * *
35962589 TGCCGATGGCATGTCCTAGACATGGTCTTACACT-GACACATCTCAT--AG
1 T--CGATGCCATGTCCCAGACATGGTCTTACACTAG-CTCATCACATCAAG
* *
35962637 CCGATG-CATGTCCCAGACAT-GTCTTACACTAGCTC-TCGTC-TCAATG
1 TCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCATC-ACATCAA-G
* * * * ***
35962683 CCGATGACATGTCCCAGACATGGTCTTACACTGGCTC-TCATAATGTGG
1 TCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCATCA-CATCAAG
* *
35962731 CCGATG-CATGTCCCAGACAT-GTTTTACACTAGC
1 TCGATGCCATGTCCCAGACATGGTCTTACACTAGC
35962764 ACACAAATAA
Statistics
Matches: 215, Mismatches: 36, Indels: 43
0.73 0.12 0.15
Matches are distributed among these distances:
43 3 0.01
44 14 0.07
45 15 0.07
46 28 0.13
47 57 0.27
48 33 0.15
49 30 0.14
50 29 0.13
51 6 0.03
ACGTcount: A:0.25, C:0.29, G:0.18, T:0.28
Consensus pattern (48 bp):
TCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCATCACATCAAG
Found at i:35962746 original size:94 final size:94
Alignment explanation
Indices: 35962446--35962763 Score: 265
Period size: 94 Copynumber: 3.4 Consensus size: 94
35962436 GGTATAATAT
* * *
35962446 CGATGCCATGTCCCAAACATAGTCTTACACTAGCTCATC-CATCAA-GTCGATGCCATGTCCCAG
1 CGATG-CATGTCCCAGACATAGTCTTACACTAGCTC-TCTC-TCAATGCCGATGACATGTCCCAG
* * * *
35962509 ACTTGGTCTTACATTGACTATCGA-AATCGAGGC
63 ACATGGTCTTACACTGACTCTC-ATAAT-GTGGC
* ** * * * * * ** * *
35962542 TGACACCATGTCCTAGAAATGGTCTTACATTAGCTCTCACATATCCGTGCCGATGGCATGTCCTA
1 CGA-TGCATGTCCCAGACATAGTCTTACACTAGCTCT--C-TCTCAATGCCGATGACATGTCCCA
* * *
35962607 GACATGGTCTTACACTGACACATC-TCA--TAGC
62 GACATGGTCTTACACTGACTC-TCATAATGTGGC
35962638 CGATGCATGTCCCAGACAT-GTCTTACACTAGCTCTCGTCTCAATGCCGATGACATGTCCCAGAC
1 CGATGCATGTCCCAGACATAGTCTTACACTAGCTCTC-TCTCAATGCCGATGACATGTCCCAGAC
*
35962702 ATGGTCTTACACTGGCTCTCATAATGTGGC
65 ATGGTCTTACACTGACTCTCATAATGTGGC
*
35962732 CGATGCATGTCCCAGACAT-GTTTTACACTAGC
1 CGATGCATGTCCCAGACATAGTCTTACACTAGC
35962764 ACACAAATAA
Statistics
Matches: 173, Mismatches: 38, Indels: 24
0.74 0.16 0.10
Matches are distributed among these distances:
91 2 0.01
92 41 0.24
94 49 0.28
95 13 0.08
96 31 0.18
97 1 0.01
98 2 0.01
99 32 0.18
100 2 0.01
ACGTcount: A:0.25, C:0.29, G:0.19, T:0.27
Consensus pattern (94 bp):
CGATGCATGTCCCAGACATAGTCTTACACTAGCTCTCTCTCAATGCCGATGACATGTCCCAGACA
TGGTCTTACACTGACTCTCATAATGTGGC
Found at i:35966713 original size:27 final size:27
Alignment explanation
Indices: 35966654--35966715 Score: 72
Period size: 27 Copynumber: 2.3 Consensus size: 27
35966644 CATTTGATAC
* *
35966654 TGATTCTGTAATGGGCTTAGGCCCACT
1 TGATTCTGTAAAGGGCTTAGGCCCAAT
* *
35966681 TAATTCTGTTAAAGGGC-TAGGCCTAAT
1 TGATTCTG-TAAAGGGCTTAGGCCCAAT
35966708 TGATTCTG
1 TGATTCTG
35966716 ATGAGGGCTG
Statistics
Matches: 29, Mismatches: 5, Indels: 2
0.81 0.14 0.06
Matches are distributed among these distances:
27 22 0.76
28 7 0.24
ACGTcount: A:0.23, C:0.18, G:0.24, T:0.35
Consensus pattern (27 bp):
TGATTCTGTAAAGGGCTTAGGCCCAAT
Found at i:35972828 original size:16 final size:17
Alignment explanation
Indices: 35972796--35972829 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
35972786 ATATAGTGGT
*
35972796 TTGAAATGTTGACTTAA
1 TTGAAATATTGACTTAA
35972813 TTGAAATATT-ACTTAA
1 TTGAAATATTGACTTAA
35972829 T
1 T
35972830 GACTTATTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 7 0.44
17 9 0.56
ACGTcount: A:0.38, C:0.06, G:0.12, T:0.44
Consensus pattern (17 bp):
TTGAAATATTGACTTAA
Found at i:35974581 original size:25 final size:22
Alignment explanation
Indices: 35974531--35974581 Score: 57
Period size: 25 Copynumber: 2.2 Consensus size: 22
35974521 TGTCAAATTA
*
35974531 CATTCAAACATACCAATTTGGT
1 CATTCAAACATACCAATTTGGC
*
35974553 CATTCAAAACATACCTTTATTTGGC
1 CATTC-AAACATACC--AATTTGGC
35974578 CATT
1 CATT
35974582 TCAACACCAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
22 5 0.21
23 9 0.38
25 10 0.42
ACGTcount: A:0.33, C:0.24, G:0.08, T:0.35
Consensus pattern (22 bp):
CATTCAAACATACCAATTTGGC
Found at i:35980005 original size:40 final size:40
Alignment explanation
Indices: 35979950--35980039 Score: 162
Period size: 40 Copynumber: 2.2 Consensus size: 40
35979940 GGACTAAGAT
*
35979950 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGTTAAGTC
1 CCGAAGGCATTTGTGCGAGTGACTATATCCGGGTTAAGTC
*
35979990 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGTTAAGTC
1 CCGAAGGCATTTGTGCGAGTGACTATATCCGGGTTAAGTC
35980030 CCGAAGGCAT
1 CCGAAGGCAT
35980040 CCGGGTTAAG
Statistics
Matches: 48, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
40 48 1.00
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.28
Consensus pattern (40 bp):
CCGAAGGCATTTGTGCGAGTGACTATATCCGGGTTAAGTC
Found at i:35980044 original size:22 final size:22
Alignment explanation
Indices: 35980016--35980061 Score: 92
Period size: 22 Copynumber: 2.1 Consensus size: 22
35980006 GAGTTACTAT
35980016 ATCCGGGTTAAGTCCCGAAGGC
1 ATCCGGGTTAAGTCCCGAAGGC
35980038 ATCCGGGTTAAGTCCCGAAGGC
1 ATCCGGGTTAAGTCCCGAAGGC
35980060 AT
1 AT
35980062 TTGTGTGAGT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.24, C:0.26, G:0.30, T:0.20
Consensus pattern (22 bp):
ATCCGGGTTAAGTCCCGAAGGC
Found at i:35980073 original size:62 final size:62
Alignment explanation
Indices: 35979976--35980101 Score: 234
Period size: 62 Copynumber: 2.0 Consensus size: 62
35979966 TAGTGACTAT
*
35979976 ATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGTTAAGTCCCGAAGGC
1 ATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGC
*
35980038 ATCCGGGTTAAGTCCCGAAGGCATTTGTGTGAGTTACTATATCCGGGCTAAGTCCCGAAGGC
1 ATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGC
35980100 AT
1 AT
35980102 TTGTGCGAGT
Statistics
Matches: 62, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
62 62 1.00
ACGTcount: A:0.23, C:0.22, G:0.29, T:0.26
Consensus pattern (62 bp):
ATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGC
Found at i:35980130 original size:102 final size:102
Alignment explanation
Indices: 35979950--35980141 Score: 341
Period size: 102 Copynumber: 1.9 Consensus size: 102
35979940 GGACTAAGAT
*
35979950 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTA
1 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA
*
35980015 TATCCGGGTTAAGTCCCGAAGGCATCCGGGTTAAGTC
66 TATCCGGGCTAAGTCCCGAAGGCATCCGGGTTAAGTC
*
35980052 CCGAAGGCATTTGTG-TGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 CCGAAGGCATTTGTGCT-AGTGACTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
35980116 ATATCCGGGCTAAGTCCCGAAGGCAT
65 ATATCCGGGCTAAGTCCCGAAGGCAT
35980142 TTGCGCGAGT
Statistics
Matches: 86, Mismatches: 3, Indels: 2
0.95 0.03 0.02
Matches are distributed among these distances:
101 1 0.01
102 85 0.99
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.27
Consensus pattern (102 bp):
CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA
TATCCGGGCTAAGTCCCGAAGGCATCCGGGTTAAGTC
Found at i:35980177 original size:39 final size:40
Alignment explanation
Indices: 35980038--35980177 Score: 210
Period size: 40 Copynumber: 3.5 Consensus size: 40
35980028 TCCCGAAGGC
* *
35980038 ATCCGGGTTAAGTCCCGAAGGCATTTGTGTGAGTTACTAT
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAT
35980078 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAT
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAT
* **
35980118 ATCCGGGCTAAGTCCCGAAGGCATTTGCGCGAGTTGTTAT
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAT
* *
35980158 AT-CTGGCTAAATCCCGAAGG
1 ATCCGGGCTAAGTCCCGAAGG
35980178 TACTTGGGTT
Statistics
Matches: 93, Mismatches: 7, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
39 16 0.17
40 77 0.83
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.28
Consensus pattern (40 bp):
ATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAT
Found at i:35985019 original size:26 final size:27
Alignment explanation
Indices: 35984990--35985048 Score: 79
Period size: 25 Copynumber: 2.3 Consensus size: 27
35984980 TACTACCAAT
*
35984990 AATAATCTAA-GTAAATAAAAAA-AGAA
1 AATAATATAATGT-AATAAAAAATAGAA
35985016 AAT-ATATAATGTAATAAAAAATAGAA
1 AATAATATAATGTAATAAAAAATAGAA
35985042 AATAATA
1 AATAATA
35985049 AAATAATAAT
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
25 14 0.48
26 12 0.41
27 3 0.10
ACGTcount: A:0.68, C:0.02, G:0.07, T:0.24
Consensus pattern (27 bp):
AATAATATAATGTAATAAAAAATAGAA
Found at i:35985055 original size:25 final size:25
Alignment explanation
Indices: 35985003--35985057 Score: 76
Period size: 25 Copynumber: 2.2 Consensus size: 25
35984993 AATCTAAGTA
**
35985003 AATAAAAAAAGAAAATATATAATGT
1 AATAAAAAAAGAAAATATATAAAAT
35985028 AATAAAAAATAGAAAATA-ATAAAAT
1 AATAAAAAA-AGAAAATATATAAAAT
35985053 AATAA
1 AATAA
35985058 TAATAGGGAT
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
25 19 0.70
26 8 0.30
ACGTcount: A:0.73, C:0.00, G:0.05, T:0.22
Consensus pattern (25 bp):
AATAAAAAAAGAAAATATATAAAAT
Found at i:35985056 original size:3 final size:3
Alignment explanation
Indices: 35985042--35985102 Score: 54
Period size: 3 Copynumber: 20.7 Consensus size: 3
35985032 AAAAATAGAA
** * * *
35985042 AAT AAT AA- AAT AAT AAT AAT AGG GAT AAT AGT AA- ACAA AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A-AT AAT AAT
35985086 AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AA
35985103 AAGGCAAACA
Statistics
Matches: 46, Mismatches: 9, Indels: 6
0.75 0.15 0.10
Matches are distributed among these distances:
2 3 0.07
3 42 0.91
4 1 0.02
ACGTcount: A:0.66, C:0.02, G:0.07, T:0.26
Consensus pattern (3 bp):
AAT
Found at i:35989840 original size:24 final size:24
Alignment explanation
Indices: 35989791--35989841 Score: 66
Period size: 24 Copynumber: 2.1 Consensus size: 24
35989781 ATGTATCAGC
* * * *
35989791 AAAAGCCGAAATGCTGAAATGTCG
1 AAAAGCCGAAACGCTAAAAAGCCG
35989815 AAAAGCCGAAACGCTAAAAAGCCG
1 AAAAGCCGAAACGCTAAAAAGCCG
35989839 AAA
1 AAA
35989842 GTTTGGCTAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.49, C:0.20, G:0.22, T:0.10
Consensus pattern (24 bp):
AAAAGCCGAAACGCTAAAAAGCCG
Found at i:35990140 original size:28 final size:29
Alignment explanation
Indices: 35990076--35990140 Score: 78
Period size: 29 Copynumber: 2.3 Consensus size: 29
35990066 GGGCCTAACG
* ** *
35990076 GGCCATATAAATGTGATTTGGGCCTAATG
1 GGCCATATAAAGGTGATTTGGGAATAATA
*
35990105 GGCCATATACAGGTGATTT-GGAATAATA
1 GGCCATATAAAGGTGATTTGGGAATAATA
35990133 GGCCATAT
1 GGCCATAT
35990141 GAATATGATT
Statistics
Matches: 31, Mismatches: 5, Indels: 1
0.84 0.14 0.03
Matches are distributed among these distances:
28 14 0.45
29 17 0.55
ACGTcount: A:0.31, C:0.14, G:0.26, T:0.29
Consensus pattern (29 bp):
GGCCATATAAAGGTGATTTGGGAATAATA
Found at i:35990159 original size:28 final size:28
Alignment explanation
Indices: 35990052--35990165 Score: 113
Period size: 28 Copynumber: 4.0 Consensus size: 28
35990042 GTGAGCATGA
* *
35990052 ATATGAATGTGACTGGGCCTAACGGGCC
1 ATATGAATGTGATTGGGCCTAATGGGCC
*
35990080 ATATAAATGTGATTTGGGCCTAATGGGCC
1 ATATGAATGTGA-TTGGGCCTAATGGGCC
* * ** *
35990109 ATAT-ACAGGTGATTTGGAATAATAGGCC
1 ATATGA-ATGTGATTGGGCCTAATGGGCC
* *
35990137 ATATGAATATGATTGGGCTTAATGGGCC
1 ATATGAATGTGATTGGGCCTAATGGGCC
35990165 A
1 A
35990166 GATACAGGTA
Statistics
Matches: 69, Mismatches: 14, Indels: 6
0.78 0.16 0.07
Matches are distributed among these distances:
28 45 0.65
29 24 0.35
ACGTcount: A:0.30, C:0.14, G:0.28, T:0.28
Consensus pattern (28 bp):
ATATGAATGTGATTGGGCCTAATGGGCC
Found at i:35991180 original size:21 final size:21
Alignment explanation
Indices: 35991142--35991189 Score: 53
Period size: 21 Copynumber: 2.2 Consensus size: 21
35991132 GTAACTGAAA
**
35991142 GGTTTCTTTTTTAGTTAATTAG
1 GGTTTCTTTTTTA-TTAAGAAG
35991164 GGTTTCTTTTATT-TTAAGAAG
1 GGTTTCTTTT-TTATTAAGAAG
35991185 GGTTT
1 GGTTT
35991190 TCAATGAAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
21 11 0.48
22 10 0.43
23 2 0.09
ACGTcount: A:0.19, C:0.04, G:0.21, T:0.56
Consensus pattern (21 bp):
GGTTTCTTTTTTATTAAGAAG
Found at i:35996585 original size:34 final size:32
Alignment explanation
Indices: 35996547--35996650 Score: 91
Period size: 34 Copynumber: 3.1 Consensus size: 32
35996537 TAACATATGC
*
35996547 TTCTAATTTAACATATGCTTCTGGAAATATGACA
1 TTCTAATTT-ATATATG-TTCTGGAAATATGACA
* * *
35996581 TTCTAATCTGATATATGTTTTTGAAAGTATGACA
1 TTCTAAT-TTATATATGTTCTGGAAA-TATGACA
* * *
35996615 TTTTGATCTTATATATGTTTCTGGTAATATGACA
1 TTCTAAT-TTATATATG-TTCTGGAAATATGACA
35996649 TT
1 TT
35996651 TTGATATTAT
Statistics
Matches: 57, Mismatches: 10, Indels: 6
0.78 0.14 0.08
Matches are distributed among these distances:
33 7 0.12
34 43 0.75
35 7 0.12
ACGTcount: A:0.31, C:0.11, G:0.13, T:0.45
Consensus pattern (32 bp):
TTCTAATTTATATATGTTCTGGAAATATGACA
Found at i:35996651 original size:34 final size:34
Alignment explanation
Indices: 35996559--35996662 Score: 129
Period size: 34 Copynumber: 3.1 Consensus size: 34
35996549 CTAATTTAAC
* * * *
35996559 ATATGCTTCTGGAAATATGACATTCTAATCTGAT
1 ATATGTTTCTGGAAATATGACATTTTGATCTTAT
*
35996593 ATATGTTT-TTGAAAGTATGACATTTTGATCTTAT
1 ATATGTTTCTGGAAA-TATGACATTTTGATCTTAT
* *
35996627 ATATGTTTCTGGTAATATGACATTTTGATATTAT
1 ATATGTTTCTGGAAATATGACATTTTGATCTTAT
35996661 AT
1 AT
35996663 TTGTATTTGT
Statistics
Matches: 60, Mismatches: 8, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
33 5 0.08
34 51 0.85
35 4 0.07
ACGTcount: A:0.31, C:0.09, G:0.14, T:0.46
Consensus pattern (34 bp):
ATATGTTTCTGGAAATATGACATTTTGATCTTAT
Found at i:36001721 original size:24 final size:25
Alignment explanation
Indices: 36001693--36001743 Score: 86
Period size: 24 Copynumber: 2.1 Consensus size: 25
36001683 AAATTTTCCT
36001693 CATGGTATCATAATAAAAAAA-ATA
1 CATGGTATCATAATAAAAAAACATA
*
36001717 CATGGTTTCATAATAAAAAAACATA
1 CATGGTATCATAATAAAAAAACATA
36001742 CA
1 CA
36001744 GACATATTTA
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
24 20 0.80
25 5 0.20
ACGTcount: A:0.55, C:0.12, G:0.08, T:0.25
Consensus pattern (25 bp):
CATGGTATCATAATAAAAAAACATA
Found at i:36003125 original size:28 final size:28
Alignment explanation
Indices: 36003058--36003147 Score: 134
Period size: 28 Copynumber: 3.4 Consensus size: 28
36003048 TATGACGTTC
*
36003058 TGCTAAGTGAAATAAGACCATGGC-AT-
1 TGCTAAGTGAAATAAGTCCATGGCAATG
36003084 T--TAAGTGAAATAAGTCCATGGCAATG
1 TGCTAAGTGAAATAAGTCCATGGCAATG
*
36003110 TGCTAAGTGAAATAAGTCCATGGCATTG
1 TGCTAAGTGAAATAAGTCCATGGCAATG
36003138 TGCTAAGTGA
1 TGCTAAGTGA
36003148 GAAATTTCCC
Statistics
Matches: 58, Mismatches: 2, Indels: 6
0.88 0.03 0.09
Matches are distributed among these distances:
24 20 0.34
25 2 0.03
26 2 0.03
28 34 0.59
ACGTcount: A:0.36, C:0.13, G:0.24, T:0.27
Consensus pattern (28 bp):
TGCTAAGTGAAATAAGTCCATGGCAATG
Found at i:36003226 original size:51 final size:51
Alignment explanation
Indices: 36003171--36003367 Score: 306
Period size: 51 Copynumber: 3.9 Consensus size: 51
36003161 TGAACCTTGG
*
36003171 GAATAAAATAGCTTTGGACACAAGTGTGGTACTATGTGAAGGCCATTTTGT
1 GAATAAAATAGCTTTGGACACAAGTGTGGTACTATGTGAAGGCCACTTTGT
* *
36003222 GAATATAATAGCTTTGGACACAAGTGTGGTACTATGTGAATGCCACTTTGT
1 GAATAAAATAGCTTTGGACACAAGTGTGGTACTATGTGAAGGCCACTTTGT
* * *
36003273 GAATTAAATAGCTTTGGACATAAGTGTGGTACTAGGTGAAGGCCACTTTGT
1 GAATAAAATAGCTTTGGACACAAGTGTGGTACTATGTGAAGGCCACTTTGT
* *
36003324 GAATAAAATAGCTTT-GACTACAAGGGTGGTACTATATGAAGGCC
1 GAATAAAATAGCTTTGGAC-ACAAGTGTGGTACTATGTGAAGGCC
36003368 CACCGTGTAT
Statistics
Matches: 132, Mismatches: 13, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
50 3 0.02
51 129 0.98
ACGTcount: A:0.31, C:0.13, G:0.25, T:0.30
Consensus pattern (51 bp):
GAATAAAATAGCTTTGGACACAAGTGTGGTACTATGTGAAGGCCACTTTGT
Found at i:36008796 original size:20 final size:20
Alignment explanation
Indices: 36008757--36008793 Score: 58
Period size: 19 Copynumber: 1.9 Consensus size: 20
36008747 TTTATTTTCT
36008757 TAAATATTTTTTAAAATTAA
1 TAAATATTTTTTAAAATTAA
*
36008777 TAAAT-TTTTTTCAAATT
1 TAAATATTTTTTAAAATT
36008794 TAACCATAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
19 11 0.69
20 5 0.31
ACGTcount: A:0.43, C:0.03, G:0.00, T:0.54
Consensus pattern (20 bp):
TAAATATTTTTTAAAATTAA
Found at i:36010411 original size:20 final size:20
Alignment explanation
Indices: 36010383--36010432 Score: 91
Period size: 20 Copynumber: 2.5 Consensus size: 20
36010373 ATTAGAGCAC
*
36010383 TTTAAAATTTGATGACCCAA
1 TTTAGAATTTGATGACCCAA
36010403 TTTAGAATTTGATGACCCAA
1 TTTAGAATTTGATGACCCAA
36010423 TTTAGAATTT
1 TTTAGAATTT
36010433 AAGTCATAAT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 29 1.00
ACGTcount: A:0.36, C:0.12, G:0.12, T:0.40
Consensus pattern (20 bp):
TTTAGAATTTGATGACCCAA
Found at i:36021908 original size:287 final size:282
Alignment explanation
Indices: 36021357--36021912 Score: 592
Period size: 287 Copynumber: 1.9 Consensus size: 282
36021347 TGTAAAAGTC
* * *
36021357 TTTTTCAATTGAGATTAAGATAGCTACATCAGTTACTGAAACAATCTAGCAATCAAGTCCAATCT
1 TTTTTCAATTGAGATTAAGATA--TACATAAGTTACTAAAACAATCTAGCAATCAAGTCCAATAT
* * * * * * *
36021422 CATCATTGCAAAATCTATAGTCTGTTTTTTGGGTCCACCGTAAAACTCACTATAAGCATTAATTA
64 CATAATTGAAAAATATACAGTCTGTTTTTTGGATCCACCATAAAACTCACTATAAACATTAATTA
* * * * *
36021487 TTGATCAAAATTCTATAATTTCTGTGAACTAAACTCTTCAATCGCAAAATCTGAGTGCCAATTTG
129 TTGATCAAAATTCTAGAATTTCTATGAACTAAACTCTTCAATCACAAAATCTAAGTGCCAATTAG
**
36021552 AATTCCAAGGTAACTTCAAATAAAATCAACGAAAAGAGAGTAAAATTGTAGGAAAGCTAACCAAT
194 AATTCCAAACTAACTT---ATAAAAT--A-GAAAAGAGAGTAAAATTGTAGGAAAGCTAACCAAT
36021617 TTACGAGGGAATGCACTCTTTTCTTTTTTT
253 TTACGAGGGAATGCACTCTTTTCTTTTTTT
*
36021647 TTTTTCAATTGAGATTAAGAT-TACGTAAGTTACTAAAACAATCTAGCAATCAAGTCCAATATCA
1 TTTTTCAATTGAGATTAAGATATACATAAGTTACTAAAACAATCTAGCAATCAAGTCCAATATCA
* * *
36021711 TAATTGAAAAATATCCAGTCTTTTTTTTCTTTTAGTCTTGATCCACCATAAAACTCACTCTAAAC
66 TAATTGAAAAATATACAGTC----TGTT-TTTT-G----GATCCACCATAAAACTCACTATAAAC
*
36021776 ATTAAATTATTGTTCAAAATTCTAGAATTTC-ATGAACTAAAAACTCTTCAA-CAACAAAATCTA
121 ATT-AATTATTGATCAAAATTCTAGAATTTCTATGAACT--AAACTCTTCAATC-ACAAAATCTA
* * *
36021839 AGTGCCGATTAGAATTCCAAACTAA-TT-TAAAAT-G-AAA-TG-GTAAATTTGTAAGG-AAGCT
182 AGTGCCAATTAGAATTCCAAACTAACTTATAAAATAGAAAAGAGAGTAAAATTGT-AGGAAAGCT
* *
36021897 GACCCATTTACGAGGG
246 AACCAATTTACGAGGG
36021913 GGAGGACTCC
Statistics
Matches: 224, Mismatches: 27, Indels: 33
0.79 0.10 0.12
Matches are distributed among these distances:
287 82 0.37
288 4 0.02
289 3 0.01
290 22 0.10
291 3 0.01
292 4 0.02
293 1 0.00
294 6 0.03
297 31 0.14
298 28 0.12
299 40 0.18
ACGTcount: A:0.38, C:0.17, G:0.12, T:0.33
Consensus pattern (282 bp):
TTTTTCAATTGAGATTAAGATATACATAAGTTACTAAAACAATCTAGCAATCAAGTCCAATATCA
TAATTGAAAAATATACAGTCTGTTTTTTGGATCCACCATAAAACTCACTATAAACATTAATTATT
GATCAAAATTCTAGAATTTCTATGAACTAAACTCTTCAATCACAAAATCTAAGTGCCAATTAGAA
TTCCAAACTAACTTATAAAATAGAAAAGAGAGTAAAATTGTAGGAAAGCTAACCAATTTACGAGG
GAATGCACTCTTTTCTTTTTTT
Found at i:36022553 original size:28 final size:30
Alignment explanation
Indices: 36022479--36022553 Score: 79
Period size: 28 Copynumber: 2.6 Consensus size: 30
36022469 TTAAATTTAC
36022479 ATTATT-AAATCACAAAATAGAAAAAACTAA
1 ATTATTAAAAT-ACAAAATAGAAAAAACTAA
*
36022509 ATTACTTGAAATA-AAAATA-AAAAAA-TAA
1 ATTA-TTAAAATACAAAATAGAAAAAACTAA
36022537 ATT-TTAAATATACAAAA
1 ATTATTAAA-ATACAAAA
36022554 ATTACAAAAA
Statistics
Matches: 40, Mismatches: 1, Indels: 10
0.78 0.02 0.20
Matches are distributed among these distances:
26 4 0.10
27 3 0.08
28 10 0.25
29 6 0.15
30 10 0.25
31 3 0.08
32 4 0.10
ACGTcount: A:0.64, C:0.07, G:0.03, T:0.27
Consensus pattern (30 bp):
ATTATTAAAATACAAAATAGAAAAAACTAA
Found at i:36023335 original size:15 final size:15
Alignment explanation
Indices: 36023315--36023382 Score: 59
Period size: 15 Copynumber: 4.4 Consensus size: 15
36023305 ATACTACAAA
36023315 ATATTTATTATTAAT
1 ATATTTATTATTAAT
*
36023330 ATATTTATAATTGTAAT
1 ATATTTATTA-T-TAAT
*
36023347 AAATATTTATTATTAAA
1 --ATATTTATTATTAAT
*
36023364 ATA-TTAATATTAA-
1 ATATTTATTATTAAT
36023377 ATATTT
1 ATATTT
36023383 TCAATAAAAT
Statistics
Matches: 44, Mismatches: 4, Indels: 11
0.75 0.07 0.19
Matches are distributed among these distances:
13 3 0.07
14 11 0.25
15 12 0.27
16 1 0.02
17 7 0.16
18 1 0.02
19 9 0.20
ACGTcount: A:0.46, C:0.00, G:0.01, T:0.53
Consensus pattern (15 bp):
ATATTTATTATTAAT
Found at i:36023399 original size:27 final size:28
Alignment explanation
Indices: 36023346--36023399 Score: 65
Period size: 27 Copynumber: 2.0 Consensus size: 28
36023336 ATAATTGTAA
* * *
36023346 TAAATATTTATTATTAAAATATTAATAT
1 TAAATATTTATCAATAAAATATGAATAT
*
36023374 TAAATATTT-TCAATAAAATGTGAATA
1 TAAATATTTATCAATAAAATATGAATA
36023400 ATATTATTTA
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
27 13 0.59
28 9 0.41
ACGTcount: A:0.50, C:0.02, G:0.04, T:0.44
Consensus pattern (28 bp):
TAAATATTTATCAATAAAATATGAATAT
Found at i:36023432 original size:16 final size:16
Alignment explanation
Indices: 36023401--36023437 Score: 58
Period size: 16 Copynumber: 2.3 Consensus size: 16
36023391 ATGTGAATAA
36023401 TATTATTTAAAATTAT
1 TATTATTTAAAATTAT
36023417 TATT-TTTAAAATTTAT
1 TATTATTTAAAA-TTAT
36023433 TATTA
1 TATTA
36023438 AAATAAAATT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
15 7 0.37
16 12 0.63
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (16 bp):
TATTATTTAAAATTAT
Found at i:36023478 original size:20 final size:22
Alignment explanation
Indices: 36023449--36023505 Score: 66
Period size: 22 Copynumber: 2.7 Consensus size: 22
36023439 AATAAAATTG
*
36023449 AAATATTAAA-TA-ATTTATTA
1 AAATAATAAATTATATTTATTA
36023469 AAATAATAAATTATATTTATTA
1 AAATAATAAATTATATTTATTA
* *
36023491 TATTAAT-AATTATAT
1 AAATAATAAATTATAT
36023506 GACTAAATAT
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
20 9 0.28
21 10 0.31
22 13 0.41
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (22 bp):
AAATAATAAATTATATTTATTA
Found at i:36024238 original size:28 final size:28
Alignment explanation
Indices: 36024207--36024260 Score: 65
Period size: 28 Copynumber: 1.9 Consensus size: 28
36024197 TTCCTTCCTA
36024207 AATTCTCAATTCTCAATAC-TCAATTTCT
1 AATTCTCAATTCTCAAT-CTTCAATTTCT
* * *
36024235 AATTTTCTATTTTCAATCTTCAATTT
1 AATTCTCAATTCTCAATCTTCAATTT
36024261 TCAATTATTT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
27 1 0.05
28 21 0.95
ACGTcount: A:0.30, C:0.20, G:0.00, T:0.50
Consensus pattern (28 bp):
AATTCTCAATTCTCAATCTTCAATTTCT
Found at i:36026976 original size:46 final size:46
Alignment explanation
Indices: 36026926--36027101 Score: 198
Period size: 46 Copynumber: 3.8 Consensus size: 46
36026916 TGGTTGAGCA
* *
36026926 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTAAACG
* * *
36026972 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTAA--A--CG
* *
36027019 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGTGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTAAACG
* *
36027065 -CCCAAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAA-CTCGTTGAGTTGAGTCCGAGTTCACTTATGG
36027102 GCGGGTTACA
Statistics
Matches: 110, Mismatches: 12, Indels: 16
0.80 0.09 0.12
Matches are distributed among these distances:
43 6 0.05
45 7 0.06
46 59 0.54
47 29 0.26
48 3 0.03
50 6 0.05
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTAAACG
Found at i:36027082 original size:93 final size:93
Alignment explanation
Indices: 36026923--36027094 Score: 283
Period size: 93 Copynumber: 1.8 Consensus size: 93
36026913 GGATGGTTGA
* * *
36026923 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCAAACGTCCCAACTCGTTGAGT
36026988 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
**
36027016 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGTGAACG-CCCAAGCTCGTTGAG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCAAACGTCCCAA-CTCGTTGAG
36027080 TTGAGTCCGAGTTCG
65 TTGAGTCCGAGTTCG
36027095 CTTATGGGCG
Statistics
Matches: 73, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
92 4 0.05
93 69 0.95
ACGTcount: A:0.22, C:0.22, G:0.28, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCAAACGTCCCAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:36032450 original size:42 final size:41
Alignment explanation
Indices: 36032342--36032487 Score: 134
Period size: 42 Copynumber: 3.4 Consensus size: 41
36032332 TTTCGATAAG
* * *
36032342 TGATTCCGTGTAAGACCAC-GTCTGGGACGTTGGCATCGATT
1 TGATTTCGTGTAAGACC-CTGTCTGGGACATCGGCATCGATT
* *
36032383 TGAGATTTACGTGTAAGACCATGTCTGGGACATCGTCATCGTATT
1 T--GATTT-CGTGTAAGACCCTGTCTGGGACATCGGCATCG-ATT
*
36032428 TGATTTCGTGTAAGACCCTGTCTGGGTCAGT-GGCATCGATACT
1 TGATTTCGTGTAAGACCCTGTCTGGGACA-TCGGCATCGAT--T
* *
36032471 TGATTACATGTAAGACC
1 TGATTTCGTGTAAGACC
36032488 ACGTCTACGA
Statistics
Matches: 87, Mismatches: 10, Indels: 14
0.78 0.09 0.13
Matches are distributed among these distances:
41 3 0.03
42 27 0.31
43 26 0.30
44 27 0.31
45 4 0.05
ACGTcount: A:0.23, C:0.20, G:0.26, T:0.32
Consensus pattern (41 bp):
TGATTTCGTGTAAGACCCTGTCTGGGACATCGGCATCGATT
Found at i:36032505 original size:43 final size:42
Alignment explanation
Indices: 36032342--36032506 Score: 149
Period size: 43 Copynumber: 3.9 Consensus size: 42
36032332 TTTCGATAAG
*
36032342 TGATTCCGTGTAAGACCACGTCTGGGACGTTGGCATCGAT-T
1 TGATTACGTGTAAGACCACGTCTGGGACGTTGGCATCGATAT
* * * *
36032383 TGAGATTTACGTGTAAGACCATGTCTGGGACATCGTCATCG-TATT
1 T--GA-TTACGTGTAAGACCACGTCTGGGACGTTGGCATCGATA-T
* *
36032428 TGATTTCGTGTAAGACC-CTGTCTGGGTCAG-TGGCATCGATACT
1 TGATTACGTGTAAGACCAC-GTCTGGGAC-GTTGGCATCGATA-T
* **
36032471 TGATTACATGTAAGACCACGTCTACGACGTTGGCAT
1 TGATTACGTGTAAGACCACGTCTGGGACGTTGGCAT
36032507 TGTACGAGCT
Statistics
Matches: 97, Mismatches: 17, Indels: 18
0.73 0.13 0.14
Matches are distributed among these distances:
41 1 0.01
42 28 0.29
43 35 0.36
44 31 0.32
45 2 0.02
ACGTcount: A:0.22, C:0.21, G:0.26, T:0.31
Consensus pattern (42 bp):
TGATTACGTGTAAGACCACGTCTGGGACGTTGGCATCGATAT
Found at i:36034101 original size:39 final size:41
Alignment explanation
Indices: 36034023--36034102 Score: 119
Period size: 39 Copynumber: 2.0 Consensus size: 41
36034013 CTGTATGCAT
** *
36034023 ACTGTATCTGAGATGGGCTAAGGCCCTAATTTTTATTTGAA
1 ACTGTATCTGAGATGGGCTAAGGCCCTAAACTATATTTGAA
36034064 ACTGTATCTGA-ATGGGCTAAGG-CCTAAACTATATTTGAA
1 ACTGTATCTGAGATGGGCTAAGGCCCTAAACTATATTTGAA
36034103 TCTATAATGG
Statistics
Matches: 36, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
39 14 0.39
40 11 0.31
41 11 0.31
ACGTcount: A:0.30, C:0.15, G:0.21, T:0.34
Consensus pattern (41 bp):
ACTGTATCTGAGATGGGCTAAGGCCCTAAACTATATTTGAA
Found at i:36036545 original size:14 final size:15
Alignment explanation
Indices: 36036516--36036544 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
36036506 TAAAATTAAA
36036516 AAAAATTAATATTTT
1 AAAAATTAATATTTT
36036531 AAAAATTAATATTT
1 AAAAATTAATATTT
36036545 ACTTTTATCA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (15 bp):
AAAAATTAATATTTT
Found at i:36036874 original size:145 final size:144
Alignment explanation
Indices: 36036713--36036980 Score: 383
Period size: 145 Copynumber: 1.9 Consensus size: 144
36036703 AAAATGTTAC
* * * * *
36036713 TAATATAATATAATTATTTTGGGTATGGAAAGAAATAAATAATTGGGTAAAAATCAATCTTCAAT
1 TAATATAATATAATTATTTTGAGTACGGAAAGAAATAAAGAATTGAGTAAAAATCAATATTCAAT
* * ** *
36036778 TCACATTTGACAATTTATAGTAAATCTTAATATTTTTAATTGTAAATTAACAAAATGATCAAATT
66 TCAAATTTAACAATTTATAGTAAATCTTAATATTTTTAATCATAAAATAAC-AAATGATCAAATT
36036843 ATAGAAAGTGTTAAT
130 ATAGAAAGTGTTAAT
* * *
36036858 TAATATAATATAATTATTTTGAGTACGGAAAGAAATAAAGAATTGAGTAAAACTTAATATTTAAT
1 TAATATAATATAATTATTTTGAGTACGGAAAGAAATAAAGAATTGAGTAAAAATCAATATTCAAT
* * *
36036923 TGAAATTTAACAATTTATAGTAAATTTTAATTTTTTTAATCATAAAATAACAAATGAT
66 TCAAATTTAACAATTTATAGTAAATCTTAATATTTTTAATCATAAAATAACAAATGAT
36036981 GCTAACATAA
Statistics
Matches: 107, Mismatches: 16, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
144 7 0.07
145 100 0.93
ACGTcount: A:0.46, C:0.05, G:0.10, T:0.38
Consensus pattern (144 bp):
TAATATAATATAATTATTTTGAGTACGGAAAGAAATAAAGAATTGAGTAAAAATCAATATTCAAT
TCAAATTTAACAATTTATAGTAAATCTTAATATTTTTAATCATAAAATAACAAATGATCAAATTA
TAGAAAGTGTTAAT
Found at i:36039230 original size:120 final size:119
Alignment explanation
Indices: 36039012--36039233 Score: 338
Period size: 120 Copynumber: 1.8 Consensus size: 119
36039002 CCAAAATACG
* **
36039012 CTTTAGCCAACTCTTTCATAAGTGTTGGGATATGCAAGCCTAAAGCAACGCTTTTATAAGAGTTG
1 CTTTAGCCAACTCTTTCATAAGGGTTGGGATATGCAAGCCTAAAGCAACGCTTAAATAAGAGTTG
36039077 GTAAAAGTCTAGTCCTAAGACGACACTTTTGGGGCAAGTGTTGGTATAGACTGGA
66 GT-AAAGTCTAGTCCTAAGACGACACTTTTGGGGCAAGTGTTGGTATAGACTGGA
* * *
36039132 CTTTAGCCAACTCTTTGTATAAGGGTTGGTATATGCATGCCTAAAGCAACGCTTAAATAAGAGTT
1 CTTTAGCCAACTCTTT-CATAAGGGTTGGGATATGCAAGCCTAAAGCAACGCTTAAATAAGAGTT
**
36039197 GGCT-TTGTCTAGTCCTAAGACGACACTTTTGGGGCAA
65 GG-TAAAGTCTAGTCCTAAGACGACACTTTTGGGGCAA
36039234 CACTTTCCTA
Statistics
Matches: 92, Mismatches: 8, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
120 47 0.51
121 44 0.48
122 1 0.01
ACGTcount: A:0.28, C:0.18, G:0.23, T:0.31
Consensus pattern (119 bp):
CTTTAGCCAACTCTTTCATAAGGGTTGGGATATGCAAGCCTAAAGCAACGCTTAAATAAGAGTTG
GTAAAGTCTAGTCCTAAGACGACACTTTTGGGGCAAGTGTTGGTATAGACTGGA
Found at i:36039332 original size:91 final size:91
Alignment explanation
Indices: 36039151--36039346 Score: 322
Period size: 91 Copynumber: 2.2 Consensus size: 91
36039141 ACTCTTTGTA
*
36039151 TAAGGGTTGGTATATGCATGCCTAAAGCAACGCTTAAATAAGAGTTGGCTTTGTCTAGTCCTAAG
1 TAAGGGTTGGGATATGCATGCCTAAAGCAACGCTTAAATAAGAGTTGGCTTTGTCTAGTCCTAAG
36039216 ACGACACTTTTGGGGCAACACTTTCC
66 ACGACACTTTTGGGGCAACACTTTCC
* * *
36039242 TAAGGGTTGGGATATGTATGCCTAAAGCAACGCTTGAATAAGAGTTGGTTTTTGTCTAGTCCTAA
1 TAAGGGTTGGGATATGCATGCCTAAAGCAACGCTTAAATAAGAGTTGG-CTTTGTCTAGTCCTAA
*
36039307 GACGACACTTTTGTGGCAACA-TTTCC
65 GACGACACTTTTGGGGCAACACTTTCC
*
36039333 TAAGTGTTGGGATA
1 TAAGGGTTGGGATA
36039347 GACTATGCTT
Statistics
Matches: 98, Mismatches: 6, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
91 63 0.64
92 35 0.36
ACGTcount: A:0.27, C:0.17, G:0.24, T:0.32
Consensus pattern (91 bp):
TAAGGGTTGGGATATGCATGCCTAAAGCAACGCTTAAATAAGAGTTGGCTTTGTCTAGTCCTAAG
ACGACACTTTTGGGGCAACACTTTCC
Found at i:36039424 original size:222 final size:213
Alignment explanation
Indices: 36039019--36039474 Score: 574
Period size: 212 Copynumber: 2.1 Consensus size: 213
36039009 ACGCTTTAGC
* * **
36039019 CAACTCTTTCATAAGTGTTGGGATATGCAAGCCTAAAGCAACGCTTTTATAAGAGTTGGTAAAAG
1 CAACACTTTCCTAAGTGTTGGGATATGCAAGCCTAAAGCAACGCTTGAATAAGAGTTGGTAAAAG
* *
36039084 TCTAGTCCTAAGACGACACTTTTGGGGCAAGTGTTGGTATAGACTGGACTTTAGCCAACTCTTTG
66 TCTAGTCCTAAGACGACACTTTTGGGCCAAGTGTTGGGATAGACTGGACTTTAGCCAACTCTTTG
* *
36039149 TATAAGGGTTGGTATATGCATGCCTAAAGCAACGCTTAAATAAGAGTTGGC-TTTGTCTAGTCCT
131 TATAAGGGTTGGTATATGCATGCCTAAAGCAACGCTTAAATAAAAGTTGGCTTTTGTATAGTCCT
36039213 AAGACGACACTTTTGGGG
196 AAGACGACACTTTTGGGG
* * * ****
36039231 CAACACTTTCCTAAGGGTTGGGATATGTATGCCTAAAGCAACGCTTGAATAAGAGTTGGTTTTTG
1 CAACACTTTCCTAAGTGTTGGGATATGCAAGCCTAAAGCAACGCTTGAATAAGAGTTGGTAAAAG
* *
36039296 TCTAGTCCTAAGACGACACTTTTGTGGCAACATTTCCTAAGTGTTGGGATAGACTATG-CTTTGG
66 TCTAGTCCTAAGACGACACTTTTG-GG--------CC-AAGTGTTGGGATAGACT-GGACTTTAG
* * * *
36039360 CCAACTCTTTGTATAAGGGTTGGTATATGTATGCCTAAGGCAATGCTTGAATAAAAGTTGGCTTT
120 CCAACTCTTTGTATAAGGGTTGGTATATGCATGCCTAAAGCAACGCTTAAATAAAAGTTGGCTTT
*
36039425 TGTATAGTCCTAAGACGACACTTTTGTGG
185 TGTATAGTCCTAAGACGACACTTTTGGGG
* * *
36039454 CGACATTTTACTAAGTGTTGG
1 CAACACTTTCCTAAGTGTTGG
36039475 TATAGACTAT
Statistics
Matches: 206, Mismatches: 26, Indels: 13
0.84 0.11 0.05
Matches are distributed among these distances:
212 78 0.38
213 2 0.01
221 1 0.00
222 78 0.38
223 47 0.23
ACGTcount: A:0.27, C:0.16, G:0.24, T:0.33
Consensus pattern (213 bp):
CAACACTTTCCTAAGTGTTGGGATATGCAAGCCTAAAGCAACGCTTGAATAAGAGTTGGTAAAAG
TCTAGTCCTAAGACGACACTTTTGGGCCAAGTGTTGGGATAGACTGGACTTTAGCCAACTCTTTG
TATAAGGGTTGGTATATGCATGCCTAAAGCAACGCTTAAATAAAAGTTGGCTTTTGTATAGTCCT
AAGACGACACTTTTGGGG
Found at i:36039426 original size:131 final size:132
Alignment explanation
Indices: 36039242--36039714 Score: 644
Period size: 132 Copynumber: 3.5 Consensus size: 132
36039232 AACACTTTCC
* * * *
36039242 TAAGGGTTGGGATATGTATGCCTAAAGCAACGCTTGAATAAGAGTTGGTTTTTGTCTAGTCCTAA
1 TAAGGGTTGGGATATGTATGCCTAAGGCAACGCTTGAATAAAAGTTGGCTTTTGTATAGTCCTAA
*
36039307 GACGACACTTTTGTGGCAACA-TTTCCTAAGTGTTGGGATAGACTATGCTTTGGCCAACTCTTTG
66 GACGACACTTTTGTGGCGACACTTTCCTAAGTGTTGGGATAGACTATGCTTTGGCCAACTCTTTG
36039371 TA
131 TA
* *
36039373 TAAGGGTTGGTATATGTATGCCTAAGGCAATGCTTGAATAAAAGTTGGCTTTTGTATAGTCCTAA
1 TAAGGGTTGGGATATGTATGCCTAAGGCAACGCTTGAATAAAAGTTGGCTTTTGTATAGTCCTAA
* * *
36039438 GACGACACTTTTGTGGCGACATTTTACTAAGTGTTGGTATAGACTATGCTTTGGCCAACTCTTTG
66 GACGACACTTTTGTGGCGACACTTTCCTAAGTGTTGGGATAGACTATGCTTTGGCCAACTCTTTG
36039503 TA
131 TA
*
36039505 TAAGGGTTGGGATATGTATGACTAAGGCAACGCTTGAATAAAAGTTGGCTTTTGTATAGTCCTAA
1 TAAGGGTTGGGATATGTATGCCTAAGGCAACGCTTGAATAAAAGTTGGCTTTTGTATAGTCCTAA
* * * *
36039570 GACGACACTTTTTTGGTGACACTTTCCGAAGTGTTGGGATAGATTGGCCAACTTATGCTTTAGCC
66 GACGACACTTTTGTGGCGACACTTTCCTAAGTGTTGGGAT--A---G---AC-TATGCTTTGGCC
36039635 AACTCTTTGTA
122 AACTCTTTGTA
* * * * * * **
36039646 TAAGGGTTGGGATATGCATGCCAAAGACAACACTTAAATAAGAGTTGGC-TTTGTCCAGTCCTAA
1 TAAGGGTTGGGATATGTATGCCTAAGGCAACGCTTGAATAAAAGTTGGCTTTTGTATAGTCCTAA
36039710 GACGA
66 GACGA
36039715 TATATGTTTT
Statistics
Matches: 304, Mismatches: 28, Indels: 11
0.89 0.08 0.03
Matches are distributed among these distances:
131 79 0.26
132 139 0.46
134 1 0.00
137 1 0.00
140 20 0.07
141 64 0.21
ACGTcount: A:0.27, C:0.16, G:0.24, T:0.33
Consensus pattern (132 bp):
TAAGGGTTGGGATATGTATGCCTAAGGCAACGCTTGAATAAAAGTTGGCTTTTGTATAGTCCTAA
GACGACACTTTTGTGGCGACACTTTCCTAAGTGTTGGGATAGACTATGCTTTGGCCAACTCTTTG
TA
Found at i:36039827 original size:130 final size:130
Alignment explanation
Indices: 36039592--36039832 Score: 317
Period size: 130 Copynumber: 1.9 Consensus size: 130
36039582 TTGGTGACAC
* * *
36039592 TTTCCGAAGTGTTGGGATAGATTGGCCAACTTATGCTTTAGCCAACTCTTTGTATAAGGGTTGGG
1 TTTCCGAAGTGTTGGGATAGATTGGCCAACATACGCTTTAGCCAACTCTTTATATAAGGGTTGGG
**
36039657 ATATGCATGCCAAAGACAACACTTAAATAAGAGTTGGCTTTGTCCAGTCCTAAGACGATATATGT
66 ATATGCATGCCAAAGACAACACTTAAATAAGAGTCAGCTTTGTCCAGTCCTAAGACGATATATGT
* ** *
36039722 TTTCCTAAGTGTTGGGATAGACTT-GCCAACATACGC-TTAGGTTAACTTTTTATATAAGGGTTG
1 TTTCCGAAGTGTTGGGATAGA-TTGGCCAACATACGCTTTA-GCCAACTCTTTATATAAGGGTTG
* * * *
36039785 TGATATGCATGCTTAATG-CAACGCTTAAATAAGAGTCAGCTTTGTCCA
64 GGATATGCATGC-CAAAGACAACACTTAAATAAGAGTCAGCTTTGTCCA
36039833 ACACTATGCC
Statistics
Matches: 95, Mismatches: 13, Indels: 6
0.83 0.11 0.05
Matches are distributed among these distances:
129 3 0.03
130 87 0.92
131 5 0.05
ACGTcount: A:0.28, C:0.17, G:0.22, T:0.33
Consensus pattern (130 bp):
TTTCCGAAGTGTTGGGATAGATTGGCCAACATACGCTTTAGCCAACTCTTTATATAAGGGTTGGG
ATATGCATGCCAAAGACAACACTTAAATAAGAGTCAGCTTTGTCCAGTCCTAAGACGATATATGT
Found at i:36039963 original size:7 final size:7
Alignment explanation
Indices: 36039942--36039985 Score: 52
Period size: 7 Copynumber: 6.0 Consensus size: 7
36039932 CATGCCTAAT
36039942 GGGTTTA
1 GGGTTTA
36039949 GGGTGTTTA
1 -GG-GTTTA
36039958 GGGTTTA
1 GGGTTTA
36039965 GGGTTTA
1 GGGTTTA
*
36039972 GGATTTA
1 GGGTTTA
*
36039979 AGGTTTA
1 GGGTTTA
36039986 AGAGTTGGCC
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
7 23 0.72
8 4 0.12
9 5 0.16
ACGTcount: A:0.18, C:0.00, G:0.39, T:0.43
Consensus pattern (7 bp):
GGGTTTA
Found at i:36040152 original size:7 final size:7
Alignment explanation
Indices: 36040140--36040251 Score: 57
Period size: 7 Copynumber: 15.4 Consensus size: 7
36040130 AGCTTCTATA
36040140 TTTAGGG
1 TTTAGGG
36040147 TTTAGGG
1 TTTAGGG
*
36040154 TTTATGG
1 TTTAGGG
*
36040161 TTTAAGAG
1 TTT-AGGG
*
36040169 TTTAGGC
1 TTTAGGG
36040176 TTTAGGG
1 TTTAGGG
* *
36040183 TGTATGGT
1 TTTA-GGG
*
36040191 TTTAAGG
1 TTTAGGG
*
36040198 TTTAGGAT
1 TTTAGG-G
*
36040206 TTTATGG
1 TTTAGGG
36040213 TCTT-GAGG
1 T-TTAG-GG
*
36040221 TTTAAGG
1 TTTAGGG
36040228 TTT-GTGG
1 TTTAG-GG
*
36040235 TTTAAGG
1 TTTAGGG
*
36040242 CTTAGGG
1 TTTAGGG
36040249 TTT
1 TTT
36040252 TGATAAAAAC
Statistics
Matches: 75, Mismatches: 22, Indels: 16
0.66 0.19 0.14
Matches are distributed among these distances:
7 55 0.73
8 20 0.27
ACGTcount: A:0.18, C:0.03, G:0.33, T:0.46
Consensus pattern (7 bp):
TTTAGGG
Found at i:36040173 original size:29 final size:29
Alignment explanation
Indices: 36040140--36040203 Score: 94
Period size: 29 Copynumber: 2.2 Consensus size: 29
36040130 AGCTTCTATA
* *
36040140 TTTAGGGTTTAGGGTTTATGG-TTTAAGAG
1 TTTAGGCTTTAGGGTGTATGGTTTTAAG-G
36040169 TTTAGGCTTTAGGGTGTATGGTTTTAAGG
1 TTTAGGCTTTAGGGTGTATGGTTTTAAGG
36040198 TTTAGG
1 TTTAGG
36040204 ATTTTATGGT
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
29 26 0.81
30 6 0.19
ACGTcount: A:0.19, C:0.02, G:0.34, T:0.45
Consensus pattern (29 bp):
TTTAGGCTTTAGGGTGTATGGTTTTAAGG
Found at i:36040208 original size:15 final size:15
Alignment explanation
Indices: 36040188--36040241 Score: 51
Period size: 15 Copynumber: 3.7 Consensus size: 15
36040178 TAGGGTGTAT
36040188 GGTTTTAAGGTTT-A
1 GGTTTTAAGGTTTGA
*
36040202 GGATTTTATGGTCTTGA
1 GG-TTTTAAGGT-TTGA
*
36040219 GG-TTTAAGGTTTGT
1 GGTTTTAAGGTTTGA
36040233 GG-TTTAAGG
1 GGTTTTAAGG
36040242 CTTAGGGTTT
Statistics
Matches: 34, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
14 14 0.41
15 15 0.44
16 2 0.06
17 3 0.09
ACGTcount: A:0.19, C:0.02, G:0.33, T:0.46
Consensus pattern (15 bp):
GGTTTTAAGGTTTGA
Found at i:36048830 original size:37 final size:37
Alignment explanation
Indices: 36048779--36048858 Score: 108
Period size: 37 Copynumber: 2.2 Consensus size: 37
36048769 CTTATTACGA
* *
36048779 AGTCTTACCCGGACATAA-TCTCCACACGAAGTTATCG
1 AGTCTTACCCGGACAAAATTC-CCACACGAAGTCATCG
* *
36048816 GGTCTTACCCGGACAAAATTCCCACACGTAGTCATCG
1 AGTCTTACCCGGACAAAATTCCCACACGAAGTCATCG
36048853 AGTCTT
1 AGTCTT
36048859 TAGAGCTCGG
Statistics
Matches: 37, Mismatches: 5, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
37 35 0.95
38 2 0.05
ACGTcount: A:0.28, C:0.30, G:0.17, T:0.25
Consensus pattern (37 bp):
AGTCTTACCCGGACAAAATTCCCACACGAAGTCATCG
Found at i:36049055 original size:47 final size:47
Alignment explanation
Indices: 36048977--36049390 Score: 670
Period size: 47 Copynumber: 8.7 Consensus size: 47
36048967 CCCTTCGGGA
* * * * * *
36048977 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
36049024 CCTGTCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
36049071 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
36049118 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
36049165 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATT-GGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
36049213 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
36049260 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
36049309 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
36049356 CTTATCACATATATGCA-TGTTCACATCCATCACAT
1 CTTATCACATATATACACT-TTCACATTCATCACAT
36049391 AGAATCCTAA
Statistics
Matches: 349, Mismatches: 12, Indels: 12
0.94 0.03 0.03
Matches are distributed among these distances:
46 36 0.10
47 220 0.63
48 11 0.03
49 82 0.23
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:36049056 original size:25 final size:25
Alignment explanation
Indices: 36049028--36049105 Score: 72
Period size: 25 Copynumber: 3.2 Consensus size: 25
36049018 CTCGGCCCTG
36049028 TCACATATATACACTTTCACATTCA
1 TCACATATATACACTTTCACATTCA
*** *** *
36049053 TCACAT-TGGCCA-TTAGGCCTT-A
1 TCACATATATACACTTTCACATTCA
36049075 TCACATATATACACTTTCACATTCA
1 TCACATATATACACTTTCACATTCA
36049100 TCACAT
1 TCACAT
36049106 CGGCCATTAG
Statistics
Matches: 36, Mismatches: 14, Indels: 6
0.64 0.25 0.11
Matches are distributed among these distances:
22 7 0.19
23 8 0.22
24 8 0.22
25 13 0.36
ACGTcount: A:0.32, C:0.28, G:0.05, T:0.35
Consensus pattern (25 bp):
TCACATATATACACTTTCACATTCA
Found at i:36049350 original size:191 final size:190
Alignment explanation
Indices: 36048977--36049390 Score: 687
Period size: 191 Copynumber: 2.2 Consensus size: 190
36048967 CCCTTCGGGA
* * *
36048977 CTTATCACAT-T-TATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATAC
1 CTTATCACATATATATACACTTTCACATCCATCACATCGGCCACTCGGCCCTATCACATATATAC
*
36049040 ACTTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
66 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
36049105 TCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
131 TCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
36049165 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCA-TTGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATCCATCACATCGGCCACTCGGCCCTATCACATATATAC
36049229 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCA
66 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATACACTTTCACATTCATCA
36049294 CATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
129 CATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
36049356 CTTATCAC--ATATATGCA-TGTTCACATCCATCACAT
1 CTTATCACATATATATACACT-TTCACATCCATCACAT
36049391 AGAATCCTAA
Statistics
Matches: 212, Mismatches: 9, Indels: 9
0.92 0.04 0.04
Matches are distributed among these distances:
188 11 0.05
189 80 0.38
190 27 0.13
191 94 0.44
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (190 bp):
CTTATCACATATATATACACTTTCACATCCATCACATCGGCCACTCGGCCCTATCACATATATAC
ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
TCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:36056924 original size:35 final size:35
Alignment explanation
Indices: 36056885--36056972 Score: 88
Period size: 35 Copynumber: 2.5 Consensus size: 35
36056875 GCATTGGAAA
**
36056885 AGGTCTATCCCAACCTTTTTAGGGTTG-CTGTAAAC
1 AGGTCTATCCCAACCTTTTTAACGTTGTCT-TAAAC
** * * *
36056920 AGGTCTATTTCAACATTTTTAACGTTGTCTTAGAT
1 AGGTCTATCCCAACCTTTTTAACGTTGTCTTAAAC
*
36056955 AGGTCAATCCCAACCTTT
1 AGGTCTATCCCAACCTTT
36056973 GCTAAAAGTC
Statistics
Matches: 41, Mismatches: 11, Indels: 2
0.76 0.20 0.04
Matches are distributed among these distances:
35 39 0.95
36 2 0.05
ACGTcount: A:0.25, C:0.22, G:0.16, T:0.38
Consensus pattern (35 bp):
AGGTCTATCCCAACCTTTTTAACGTTGTCTTAAAC
Found at i:36057170 original size:37 final size:36
Alignment explanation
Indices: 36056887--36057458 Score: 213
Period size: 37 Copynumber: 15.7 Consensus size: 36
36056877 ATTGGAAAAG
* * *
36056887 GTCTATCCCAACCTTTTT-AGGGTTG-CTGTAAACAG
1 GTCTATCCCAACCTTTTTAAAGGTTGCCT-TAGACAT
** * * * * *
36056922 GTCTATTTCAACATTTTT-AACGTTGTCTTAGATAG
1 GTCTATCCCAACCTTTTTAAAGGTTGCCTTAGACAT
* * * * * *
36056957 GTCAATCCCAACCTTTGCTAAAAGTCGCCTTAGATAA
1 GTCTATCCCAACCTTT-TTAAAGGTTGCCTTAGACAT
* * * *
36056994 GATATATACCAACGTTTTT-AAGGTTACCTTAGA-A-
1 G-TCTATCCCAACCTTTTTAAAGGTTGCCTTAGACAT
* * * * *
36057028 GAATCTATCGCAACCTTCTTAAA-GTTACTTTAAACCA-
1 G--TCTATCCCAACCTTTTTAAAGGTTGCCTTAGA-CAT
* *
36057065 GTATATCCCAACCTTTTTTTAAGGTTGCCTTAGACGAT
1 GTCTATCCCAACC-TTTTTAAAGGTTGCCTTAGAC-AT
* * * *
36057103 GTCTATTCTAACATTTTTAAAAGGTTGCCTTAAACAT
1 GTCTATCCCAACCTTTTT-AAAGGTTGCCTTAGACAT
* * *
36057140 GCCTATCCCAACCTTTCCTAAAGGTTGCCTTAGACAA
1 GTCTATCCCAACCTTT-TTAAAGGTTGCCTTAGACAT
* * * *
36057177 GATCTATCCCAACTTTTTTAAAAAGTTGCTTTAGATCAG
1 G-TCTATCCCAACCTTTTT-AAAGGTTGCCTTAGA-CAT
* * ** * * * *
36057216 GTTTATACCAATTTTTTTAAGGGTTGCTTTAGATAAG
1 GTCTATCCCAACCTTTTTAAAGGTTGCCTTAGA-CAT
* *
36057253 GCCTATCCCAACCTTTTT-AAGATTGCCTTA-A-AT
1 GTCTATCCCAACCTTTTTAAAGGTTGCCTTAGACAT
* * * *
36057286 GAGTCAACCCCAACC-TTTTAAAGGTTGCCATAGAC-G
1 --GTCTATCCCAACCTTTTTAAAGGTTGCCTTAGACAT
* *
36057322 GATCTATCCCAA-CTATTCTTAAAAGTTGCCTTAGACAA
1 G-TCTATCCCAACCT-TT-TTAAAGGTTGCCTTAGACAT
* * * * *
36057360 GAACTATACCAACCTTTTTATA-GTTGCCTTATACAA
1 G-TCTATCCCAACCTTTTTAAAGGTTGCCTTAGACAT
* ** * * *
36057396 GTTTATAACAACGTTTTTCAAAGGTTGGTCTT-GACTAG
1 GTCTATCCCAACCTTTTT-AAAGGTT-GCCTTAGAC-AT
* *
36057434 GTCTATACCAACCCATTTTAAAGGT
1 GTCTATCCCAA-CCTTTTTAAAGGT
36057459 CGGCATTGAC
Statistics
Matches: 405, Mismatches: 99, Indels: 63
0.71 0.17 0.11
Matches are distributed among these distances:
33 1 0.00
34 7 0.02
35 112 0.28
36 51 0.13
37 117 0.29
38 107 0.26
39 10 0.02
ACGTcount: A:0.30, C:0.21, G:0.14, T:0.35
Consensus pattern (36 bp):
GTCTATCCCAACCTTTTTAAAGGTTGCCTTAGACAT
Done.