Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A06
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 115140250
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2234201 characters in sequence are not A, C, G, or T
File 109 of 345
Found at i:36060114 original size:43 final size:42
Alignment explanation
Indices: 36059955--36060112 Score: 160
Period size: 43 Copynumber: 3.7 Consensus size: 42
36059945 ATGTGATTTT
*
36059955 GTGTAAGACCACGTCTGGGATGTTGGCATCG-ATTTGAGATTTAC
1 GTGTAAGACCACGTCTGGGACGTTGGCATCGTATTT--GA-TTAC
* * * * *
36059999 GTGTAAAACCATGTTTGGGACATTGGCATCGTATTTGATTTC
1 GTGTAAGACCACGTCTGGGACGTTGGCATCGTATTTGATTAC
* *
36060041 GTGTAAGACC-CTGTCTGGGACAG-TGGCATTGGTATTTGATAAC
1 GTGTAAGACCAC-GTCTGGGAC-GTTGGCA-TCGTATTTGATTAC
*
36060084 ATGTAAGACCACGTCTGGGACGTTGGCAT
1 GTGTAAGACCACGTCTGGGACGTTGGCAT
36060113 TGTACGAGTT
Statistics
Matches: 94, Mismatches: 14, Indels: 14
0.77 0.11 0.11
Matches are distributed among these distances:
42 27 0.29
43 36 0.38
44 27 0.29
45 4 0.04
ACGTcount: A:0.23, C:0.16, G:0.28, T:0.32
Consensus pattern (42 bp):
GTGTAAGACCACGTCTGGGACGTTGGCATCGTATTTGATTAC
Found at i:36075959 original size:46 final size:45
Alignment explanation
Indices: 36075891--36076044 Score: 150
Period size: 48 Copynumber: 3.3 Consensus size: 45
36075881 ATGGCATTGG
36075891 TGGGACATGCATCGGCCTCGAGATGTAAGCCAGTGTAAGA-CATATC
1 TGGGACATGCATCGGCCTCGAGATGT--GCCAGTGTAAGACCATATC
* *
36075937 TGGGACATGCATCGG-CTACGAGATGTGTCAGTGTAAGACCATGTC
1 TGGGACATGCATCGGCCT-CGAGATGTGCCAGTGTAAGACCATATC
* * ** * *
36075982 TGGGACGTGGCATTGGCACGTATAGAGGTGCCAGTGTAAGACCATGTC
1 TGGGACAT-GCATCGGC-C-TCGAGATGTGCCAGTGTAAGACCATATC
*
36076030 TAGGACATGGCATCG
1 TGGGACAT-GCATCG
36076045 TCACGGATAT
Statistics
Matches: 91, Mismatches: 11, Indels: 10
0.81 0.10 0.09
Matches are distributed among these distances:
44 11 0.12
45 14 0.15
46 29 0.32
48 36 0.40
49 1 0.01
ACGTcount: A:0.25, C:0.20, G:0.32, T:0.23
Consensus pattern (45 bp):
TGGGACATGCATCGGCCTCGAGATGTGCCAGTGTAAGACCATATC
Found at i:36076020 original size:48 final size:47
Alignment explanation
Indices: 36075919--36076187 Score: 186
Period size: 48 Copynumber: 5.7 Consensus size: 47
36075909 CGAGATGTAA
* *
36075919 GCCAGTGTAAGA-CATATCTGGGACAT-GCATCGGCTACG--AGATGT
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGC-ACGATAGAGGT
* * *
36075963 GTCAGTGTAAGACCATGTCTGGGACGTGGCATTGGCACGTATAGAGGT
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCACG-ATAGAGGT
* * * *
36076011 GCCAGTGTAAGACCATGTCTAGGACATGGCATCGTCACGGATATGTGAGA
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCAC-GATA-GAG-GT
* * * * * *** *
36076061 GCTAGTATAAGACCATGTCTGGGACATGGCGTCGGCCTCAATTTTGAT
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGG-CACGATAGAGGT
* * * ** * * *
36076109 AGTCAGTGTAAGACCATGTTTGGGACATGGCATCGACTTGATGGATGA
1 -GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCACGATAGAGGT
* * *
36076157 ACCAATATAAGACCATGTCTGGGACATGGCA
1 GCCAGTGTAAGACCATGTCTGGGACATGGCA
36076188 ACGGTATTAT
Statistics
Matches: 173, Mismatches: 42, Indels: 17
0.75 0.18 0.07
Matches are distributed among these distances:
44 11 0.06
45 15 0.09
46 7 0.04
47 26 0.15
48 45 0.26
49 34 0.20
50 33 0.19
51 2 0.01
ACGTcount: A:0.27, C:0.19, G:0.30, T:0.25
Consensus pattern (47 bp):
GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCACGATAGAGGT
Found at i:36079011 original size:210 final size:210
Alignment explanation
Indices: 36078649--36079070 Score: 790
Period size: 210 Copynumber: 2.0 Consensus size: 210
36078639 ATTTTCAACA
36078649 AGATTTCCACCAAAGTCTCCACATTTCCCATATTTTTAAGGTAAACCCTAAAATTTCATTTTTTA
1 AGATTTCCACCAAAGTCTCCACATTTCCCATATTTTTAAGGTAAACCCTAAAATTTCATTTTTTA
*
36078714 TTTCAAAATCATACTAGCTTTAGAATACAACTTTTTATAAATATATTGTTTTAAATTGAACATAT
66 TTTCAAAATCATACTAGCTTTAGAAGACAACTTTTTATAAATATATTGTTTTAAATTGAACATAT
*
36078779 ATAACTTTTACATATATACATATTTTTGTTACTGTACATATTTTAGATATATATACGTATCAAAT
131 ATAACTTTTACATATATACATATTTTCGTTACTGTACATATTTTAGATATATATACGTATCAAAT
36078844 AAAAAAATTACTTTC
196 AAAAAAATTACTTTC
*
36078859 AGATTTCCACCAAAGTCTCGACATTTCCCATATTTTTAAGGTAAACCCTAAAATTTCATTTTTTA
1 AGATTTCCACCAAAGTCTCCACATTTCCCATATTTTTAAGGTAAACCCTAAAATTTCATTTTTTA
* *
36078924 TTTCAAAATCATACTAGCTTTAGAAGATAACTTTTTATAAATATATTTTTTTAAATTGAACATAT
66 TTTCAAAATCATACTAGCTTTAGAAGACAACTTTTTATAAATATATTGTTTTAAATTGAACATAT
*
36078989 ATAACTTTTACATATATACATATTTTCGTTACTGTACATATTTTAGATCTATATACGTATCAAAT
131 ATAACTTTTACATATATACATATTTTCGTTACTGTACATATTTTAGATATATATACGTATCAAAT
36079054 AAAAAAATTACTTTC
196 AAAAAAATTACTTTC
36079069 AG
1 AG
36079071 TTTGCCCTTT
Statistics
Matches: 206, Mismatches: 6, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
210 206 1.00
ACGTcount: A:0.37, C:0.15, G:0.06, T:0.42
Consensus pattern (210 bp):
AGATTTCCACCAAAGTCTCCACATTTCCCATATTTTTAAGGTAAACCCTAAAATTTCATTTTTTA
TTTCAAAATCATACTAGCTTTAGAAGACAACTTTTTATAAATATATTGTTTTAAATTGAACATAT
ATAACTTTTACATATATACATATTTTCGTTACTGTACATATTTTAGATATATATACGTATCAAAT
AAAAAAATTACTTTC
Found at i:36096622 original size:54 final size:54
Alignment explanation
Indices: 36096535--36096648 Score: 210
Period size: 54 Copynumber: 2.1 Consensus size: 54
36096525 TCAACCTAGA
36096535 GTCAATTGCTTTTACTCTCGAAAGAGATATTAACATAATTTAGGGATTTCTATG
1 GTCAATTGCTTTTACTCTCGAAAGAGATATTAACATAATTTAGGGATTTCTATG
*
36096589 GTCAGTTGCTTTTACTCTCGAAAGAGATATTAACATAATTTAGGGATTTCTATG
1 GTCAATTGCTTTTACTCTCGAAAGAGATATTAACATAATTTAGGGATTTCTATG
36096643 GATCAA
1 G-TCAA
36096649 GACACAAGTG
Statistics
Matches: 57, Mismatches: 2, Indels: 1
0.95 0.03 0.02
Matches are distributed among these distances:
54 54 0.95
55 3 0.05
ACGTcount: A:0.32, C:0.13, G:0.18, T:0.38
Consensus pattern (54 bp):
GTCAATTGCTTTTACTCTCGAAAGAGATATTAACATAATTTAGGGATTTCTATG
Found at i:36096678 original size:40 final size:40
Alignment explanation
Indices: 36096623--36096700 Score: 147
Period size: 40 Copynumber: 1.9 Consensus size: 40
36096613 AGATATTAAC
36096623 ATAATTTAGGGATTTCTATGGATCAAGACACAAGTGAACA
1 ATAATTTAGGGATTTCTATGGATCAAGACACAAGTGAACA
*
36096663 ATAATTTAGGGATTTCTATGGATCAGGACACAAGTGAA
1 ATAATTTAGGGATTTCTATGGATCAAGACACAAGTGAA
36096701 TAAATCGTTT
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
40 37 1.00
ACGTcount: A:0.38, C:0.12, G:0.22, T:0.28
Consensus pattern (40 bp):
ATAATTTAGGGATTTCTATGGATCAAGACACAAGTGAACA
Found at i:36097659 original size:21 final size:21
Alignment explanation
Indices: 36097621--36097661 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
36097611 GTAAGTCTAC
* **
36097621 TTATTTTATGGATGAATGCAT
1 TTATATTATGGACAAATGCAT
36097642 TTATATTATGGACAAATGCA
1 TTATATTATGGACAAATGCA
36097662 CTAACTTGTG
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.34, C:0.07, G:0.17, T:0.41
Consensus pattern (21 bp):
TTATATTATGGACAAATGCAT
Found at i:36105706 original size:27 final size:27
Alignment explanation
Indices: 36105662--36105816 Score: 152
Period size: 27 Copynumber: 5.7 Consensus size: 27
36105652 TGCTATACAA
* * *
36105662 TCAACTCG-ACACTTAGTGCCACGTAA
1 TCAAATCGCACACTTAGTGCCACATAG
*
36105688 TCAAATCGCACACTTAGTGCTACATAG
1 TCAAATCGCACACTTAGTGCCACATAG
* * * *
36105715 TTAGACTCGCACACTTAGTGCCGCATGG
1 TCA-AATCGCACACTTAGTGCCACATAG
* *
36105743 TCAATTCGCACACTTAGTG-CATCATAT
1 TCAAATCGCACACTTAGTGCCA-CATAG
** *
36105770 TCATTTCGCACACTTAGTGCAACATAG
1 TCAAATCGCACACTTAGTGCCACATAG
*
36105797 TCGAATCGCACACTTAGTGC
1 TCAAATCGCACACTTAGTGC
36105817 TGTAAACATT
Statistics
Matches: 105, Mismatches: 20, Indels: 7
0.80 0.15 0.05
Matches are distributed among these distances:
26 8 0.08
27 74 0.70
28 23 0.22
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.27
Consensus pattern (27 bp):
TCAAATCGCACACTTAGTGCCACATAG
Found at i:36105806 original size:54 final size:54
Alignment explanation
Indices: 36105665--36105817 Score: 170
Period size: 54 Copynumber: 2.8 Consensus size: 54
36105655 TATACAATCA
* *
36105665 ACTCG-ACACTTAGTGCCACGTAATCAAATCGCACACTTAGTGCTACATAGTTAG
1 ACTCGCACACTTAGTGCCACATAGTC-AATCGCACACTTAGTGCTACATAGTTAG
* *
36105719 ACTCGCACACTTAGTGCCGCATGGTCAATTCGCACACTTAGTGC-ATCATA-TTCA-
1 ACTCGCACACTTAGTGCCACATAGTCAA-TCGCACACTTAGTGCTA-CATAGTT-AG
** *
36105773 TTTCGCACACTTAGTGCAACATAGTCGAATCGCACACTTAGTGCT
1 ACTCGCACACTTAGTGCCACATAGTC-AATCGCACACTTAGTGCT
36105818 GTAAACATTT
Statistics
Matches: 84, Mismatches: 9, Indels: 11
0.81 0.09 0.11
Matches are distributed among these distances:
54 46 0.55
55 38 0.45
ACGTcount: A:0.28, C:0.27, G:0.17, T:0.27
Consensus pattern (54 bp):
ACTCGCACACTTAGTGCCACATAGTCAATCGCACACTTAGTGCTACATAGTTAG
Found at i:36113529 original size:27 final size:27
Alignment explanation
Indices: 36113499--36113676 Score: 115
Period size: 27 Copynumber: 6.6 Consensus size: 27
36113489 ATATTGAGCC
* * *
36113499 CGCACACTCAGTGCTATACAATCAACT
1 CGCACACTTAGTGCTACACAATCAAAT
* **
36113526 CGCACACTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTACACAATCAAAT
* * * *
36113553 CGCACACTTAGTGCTACATAGTTAGACT
1 CGCACACTTAGTGCTACACAATCA-AAT
** *** *
36113581 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACACAATCAAAT
* * **
36113608 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CACAATCAAAT
* * * *
36113635 CGCACACTTAGTGCAACATAGTCGAAT
1 CGCACACTTAGTGCTACACAATCAAAT
36113662 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
36113677 GTACAATTTA
Statistics
Matches: 123, Mismatches: 25, Indels: 6
0.80 0.16 0.04
Matches are distributed among these distances:
27 100 0.81
28 23 0.19
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACACAATCAAAT
Found at i:36113592 original size:55 final size:55
Alignment explanation
Indices: 36113499--36113676 Score: 204
Period size: 54 Copynumber: 3.3 Consensus size: 55
36113489 ATATTGAGCC
* * *
36113499 CGCACACTCAGTGCTATACA-A-TCAACTCGCACACTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTAT-CATATTCAACTCGCACACTTAGTGCCACATAGTCAAAT
* * *
36113553 CGCACACTTAGTGCTA-CATAGTT-AGACTCGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTATCATA-TTCA-ACTCGCACACTTAGTGCCACATAGTCAAAT
** * *
36113608 CGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCGAAT
1 CGCACACTTAGTGCTATCATATTCAACTCGCACACTTAGTGCCACATAGTCAAAT
36113662 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
36113677 GTACAATTTA
Statistics
Matches: 104, Mismatches: 13, Indels: 13
0.80 0.10 0.10
Matches are distributed among these distances:
52 2 0.02
53 1 0.01
54 56 0.54
55 45 0.43
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.26
Consensus pattern (55 bp):
CGCACACTTAGTGCTATCATATTCAACTCGCACACTTAGTGCCACATAGTCAAAT
Found at i:36113638 original size:82 final size:81
Alignment explanation
Indices: 36113520--36113675 Score: 215
Period size: 82 Copynumber: 1.9 Consensus size: 81
36113510 TGCTATACAA
* * *
36113520 TCAACTCGCACACTTAGTGCCACGTAATCAAATCGCACACTTAGTGCTACATAGTTAGACTCGCA
1 TCAACTCGCACACTTAGTGCCACATAATCAAATCGCACACTTAGTGCAACATAG-TAGAATCGCA
36113585 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * ** *
36113602 TCAATTCGCACACTTAGTG-CATCATATTCATTTCGCACACTTAGTGCAACATAGTCGAATCGCA
1 TCAACTCGCACACTTAGTGCCA-CATAATCAAATCGCACACTTAGTGCAACATAGTAGAATCGCA
36113666 CACTTAGTGC
65 CACTTAGTGC
36113676 TGTACAATTT
Statistics
Matches: 65, Mismatches: 8, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
81 20 0.31
82 45 0.69
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCCACATAATCAAATCGCACACTTAGTGCAACATAGTAGAATCGCAC
ACTTAGTGCCGCATGG
Found at i:36118267 original size:18 final size:18
Alignment explanation
Indices: 36118246--36118293 Score: 51
Period size: 18 Copynumber: 2.7 Consensus size: 18
36118236 AATATAATTT
*
36118246 TGGAGATGAAGATTAAGA
1 TGGAGATGAAGATAAAGA
* *
36118264 TGGACATGGAGATAAAGA
1 TGGAGATGAAGATAAAGA
**
36118282 TAAAGATGAAGA
1 TGGAGATGAAGA
36118294 AGATGAGTCA
Statistics
Matches: 23, Mismatches: 7, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.48, C:0.02, G:0.31, T:0.19
Consensus pattern (18 bp):
TGGAGATGAAGATAAAGA
Found at i:36120552 original size:26 final size:26
Alignment explanation
Indices: 36120494--36120555 Score: 97
Period size: 26 Copynumber: 2.4 Consensus size: 26
36120484 CAATAATAGC
* *
36120494 CTAAATGCTTTCTCAATAAAGATATG
1 CTAAATTCTTTCTCAATAAAAATATG
36120520 CTAAATTCTTTCTCAATAAAAATATG
1 CTAAATTCTTTCTCAATAAAAATATG
*
36120546 CTTAATTCTT
1 CTAAATTCTT
36120556 ACCAATTAAT
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 33 1.00
ACGTcount: A:0.37, C:0.16, G:0.06, T:0.40
Consensus pattern (26 bp):
CTAAATTCTTTCTCAATAAAAATATG
Found at i:36133566 original size:47 final size:47
Alignment explanation
Indices: 36133515--36134117 Score: 1019
Period size: 47 Copynumber: 12.7 Consensus size: 47
36133505 TTAGGATTCT
* * *
36133515 ATGTGATGGATGTGAACA-TGCATATATGAGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAA-AGTGTATATATGTGATAAGGCCTAATGGCCG
36133562 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
36133609 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* *
36133656 ATGTGATGAATGTGAATGTGTGTATATATGTGGTAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAA--AGTGTATATATGTGATAAGGCCTAATGGCCG
*
36133705 ATGTGATGAATGTGAAAGCGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
36133752 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
36133799 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
*
36133848 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
36133895 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
36133942 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
36133989 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * * * *
36134036 ATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCA
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * *
36134083 ACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAG
36134118 TCCCGAAGGG
Statistics
Matches: 530, Mismatches: 21, Indels: 10
0.94 0.04 0.02
Matches are distributed among these distances:
46 1 0.00
47 437 0.82
49 92 0.17
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (47 bp):
ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
Found at i:36133590 original size:25 final size:25
Alignment explanation
Indices: 36133562--36133640 Score: 65
Period size: 25 Copynumber: 3.3 Consensus size: 25
36133552 CTAATGGCCG
36133562 ATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATGAATGTGAAAGTGTATAT
* *** ****
36133587 ATGTGAT-AAGGCCTAA-TG-GCCG
1 ATGTGATGAATGTGAAAGTGTATAT
36133609 ATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATGAATGTGAAAGTGTATAT
36133634 ATGTGAT
1 ATGTGAT
36133641 AAGGCCTAAT
Statistics
Matches: 35, Mismatches: 16, Indels: 6
0.61 0.28 0.11
Matches are distributed among these distances:
22 7 0.20
23 7 0.20
24 7 0.20
25 14 0.40
ACGTcount: A:0.33, C:0.05, G:0.29, T:0.33
Consensus pattern (25 bp):
ATGTGATGAATGTGAAAGTGTATAT
Found at i:36133697 original size:143 final size:143
Alignment explanation
Indices: 36133536--36134117 Score: 1010
Period size: 143 Copynumber: 4.1 Consensus size: 143
36133526 GTGAACATGC
*
36133536 ATATATGAGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCT
36133601 AATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
66 AATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
*
36133666 TGTGAATGTGTGT
131 TGTGAAAGTGTGT
* *
36133679 ATATATGTGGTAAGGCCTAATGGCCGATGTGATGAATGTGAAAGCGTATATATGTGATAAGGCCT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCT
36133744 AATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
66 AATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
*
36133809 TGTGAAAGTGTAT
131 TGTGAAAGTGTGT
36133822 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCT
*
36133887 AATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
66 AATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
36133952 TGTGAAA--GTGT
131 TGTGAAAGTGTGT
36133963 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCT
* * * * * * *
36134028 AATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGGA
66 AATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
36134093 TGTGAAA--GTGT
131 TGTGAAAGTGTGT
*
36134104 ATAAATGTGATAAG
1 ATATATGTGATAAG
36134118 TCCCGAAGGG
Statistics
Matches: 421, Mismatches: 18, Indels: 2
0.95 0.04 0.00
Matches are distributed among these distances:
141 149 0.35
143 272 0.65
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (143 bp):
ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCT
AATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
TGTGAAAGTGTGT
Found at i:36134292 original size:37 final size:37
Alignment explanation
Indices: 36134236--36134314 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
36134226 CCGAGCTCTA
* * *
36134236 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
36134273 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
36134310 AAGAC
1 AAGAC
36134315 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:36137105 original size:22 final size:22
Alignment explanation
Indices: 36137080--36137126 Score: 76
Period size: 22 Copynumber: 2.1 Consensus size: 22
36137070 CGGGATAGAG
**
36137080 TATATGTCTCGAAAAATGAACT
1 TATATGTAACGAAAAATGAACT
36137102 TATATGTAACGAAAAATGAACT
1 TATATGTAACGAAAAATGAACT
36137124 TAT
1 TAT
36137127 TCAGAAAATT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.45, C:0.11, G:0.13, T:0.32
Consensus pattern (22 bp):
TATATGTAACGAAAAATGAACT
Found at i:36138146 original size:13 final size:13
Alignment explanation
Indices: 36138128--36138152 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
36138118 TCAACAGAGT
36138128 TAGAAAGGATTCA
1 TAGAAAGGATTCA
36138141 TAGAAAGGATTC
1 TAGAAAGGATTC
36138153 GTAATATGTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.44, C:0.08, G:0.24, T:0.24
Consensus pattern (13 bp):
TAGAAAGGATTCA
Found at i:36147787 original size:64 final size:64
Alignment explanation
Indices: 36147677--36147799 Score: 185
Period size: 64 Copynumber: 1.9 Consensus size: 64
36147667 TAACTATTCA
* * *
36147677 AGTGGGAATTAACCAATTATTATCATTCTCAACTATAGTTAAACATCTCTTCTTTGGAAAGTCG
1 AGTGGGAATTAACCAATTATTATCATTCTCAACTACAGGTAAACATCCCTTCTTTGGAAAGTCG
* *
36147741 AGTGGGAGTTAACTC-ATTATTATCATTCTCAACTACAGGTAGACATCCCTTCTTTGGAA
1 AGTGGGAATTAAC-CAATTATTATCATTCTCAACTACAGGTAAACATCCCTTCTTTGGAA
36147800 CACACTGGGT
Statistics
Matches: 53, Mismatches: 5, Indels: 2
0.88 0.08 0.03
Matches are distributed among these distances:
64 52 0.98
65 1 0.02
ACGTcount: A:0.31, C:0.19, G:0.15, T:0.35
Consensus pattern (64 bp):
AGTGGGAATTAACCAATTATTATCATTCTCAACTACAGGTAAACATCCCTTCTTTGGAAAGTCG
Found at i:36152411 original size:81 final size:81
Alignment explanation
Indices: 36152276--36152432 Score: 287
Period size: 81 Copynumber: 1.9 Consensus size: 81
36152266 GTGAGATAGG
36152276 CATAAGACTGAATTGGACAAAATAAAACCATACATTTGCTAATAAGGTCAAGTATTCTCTGCGAC
1 CATAAGACTGAATTGGACAAAATAAAACCATACATTTGCTAATAAGGTCAAGTATTCTCTGCGAC
*
36152341 AAGTATGAGTCCCTGA
66 AACTATGAGTCCCTGA
* *
36152357 CATAAGACTGAATTGGACAAAATAAAACCATACCTTTGCTAATAAGGTCAAGTATTCTCTGTGAC
1 CATAAGACTGAATTGGACAAAATAAAACCATACATTTGCTAATAAGGTCAAGTATTCTCTGCGAC
36152422 AACTATGAGTC
66 AACTATGAGTC
36152433 TTGTGTTTCG
Statistics
Matches: 73, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
81 73 1.00
ACGTcount: A:0.38, C:0.18, G:0.17, T:0.27
Consensus pattern (81 bp):
CATAAGACTGAATTGGACAAAATAAAACCATACATTTGCTAATAAGGTCAAGTATTCTCTGCGAC
AACTATGAGTCCCTGA
Found at i:36153323 original size:7 final size:7
Alignment explanation
Indices: 36153311--36153337 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
36153301 TATAAAAATT
36153311 AATATAA
1 AATATAA
36153318 AATATAA
1 AATATAA
36153325 AATATAA
1 AATATAA
36153332 AATATA
1 AATATA
36153338 TTAATATATT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (7 bp):
AATATAA
Found at i:36156967 original size:36 final size:36
Alignment explanation
Indices: 36156920--36156992 Score: 146
Period size: 36 Copynumber: 2.0 Consensus size: 36
36156910 TTATTCTTTA
36156920 ACTTAGAATAATTAAATCTTTGTTCATGTTGTTACG
1 ACTTAGAATAATTAAATCTTTGTTCATGTTGTTACG
36156956 ACTTAGAATAATTAAATCTTTGTTCATGTTGTTACG
1 ACTTAGAATAATTAAATCTTTGTTCATGTTGTTACG
36156992 A
1 A
36156993 ATAATTTTAC
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 37 1.00
ACGTcount: A:0.32, C:0.11, G:0.14, T:0.44
Consensus pattern (36 bp):
ACTTAGAATAATTAAATCTTTGTTCATGTTGTTACG
Found at i:36161765 original size:16 final size:17
Alignment explanation
Indices: 36161744--36161776 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
36161734 CCCTTCACCT
*
36161744 ATTCATTTC-ACACATC
1 ATTCATTCCTACACATC
36161760 ATTCATTCCTACACATC
1 ATTCATTCCTACACATC
36161777 TTTCTCTCTT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 8 0.53
17 7 0.47
ACGTcount: A:0.30, C:0.33, G:0.00, T:0.36
Consensus pattern (17 bp):
ATTCATTCCTACACATC
Found at i:36166793 original size:48 final size:47
Alignment explanation
Indices: 36166698--36166800 Score: 145
Period size: 47 Copynumber: 2.2 Consensus size: 47
36166688 TGATAAGTAT
* *
36166698 TATACCATGGCCCGTAGCCAAATCAAGGTAACTTATCCCAGAGTACC
1 TATACCATGGCCCGTAGCCAAATCAAGGTAACTCATCCCAGAATACC
* *
36166745 TATACCATGGCCCGTAGCCAAATCAAAGGTAACTCCTCTCTA-AATACC
1 TATACCATGGCCCGTAGCCAAATC-AAGGTAACTCATC-CCAGAATACC
36166793 TATACCAT
1 TATACCAT
36166801 AGGTCGCAGT
Statistics
Matches: 50, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
47 24 0.48
48 24 0.48
49 2 0.04
ACGTcount: A:0.33, C:0.30, G:0.14, T:0.23
Consensus pattern (47 bp):
TATACCATGGCCCGTAGCCAAATCAAGGTAACTCATCCCAGAATACC
Found at i:36174588 original size:37 final size:37
Alignment explanation
Indices: 36174546--36174645 Score: 173
Period size: 37 Copynumber: 2.7 Consensus size: 37
36174536 CTCGGACGTT
* *
36174546 ATCTCCACACGAAGTTATCGGGTCTTACCCGGACAAA
1 ATCTCCACACGTAGTCATCGGGTCTTACCCGGACAAA
*
36174583 ATCTCCACACGTAGTCATCGGGTCTTACCCGGACATA
1 ATCTCCACACGTAGTCATCGGGTCTTACCCGGACAAA
36174620 ATCTCCACACGTAGTCATCGGGTCTT
1 ATCTCCACACGTAGTCATCGGGTCTT
36174646 TAGAGCTCGG
Statistics
Matches: 60, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 60 1.00
ACGTcount: A:0.25, C:0.31, G:0.19, T:0.25
Consensus pattern (37 bp):
ATCTCCACACGTAGTCATCGGGTCTTACCCGGACAAA
Found at i:36174835 original size:47 final size:47
Alignment explanation
Indices: 36174764--36175133 Score: 580
Period size: 47 Copynumber: 7.7 Consensus size: 47
36174754 CCCTTCGGGA
* * * * * *
36174764 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
36174811 CCTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
36174858 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
36174905 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
36174954 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
36175003 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
36175052 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
36175099 CTTATCTCATATATGCA-TGTTCACATCCATCACAT
1 CTTATCACATATATACACT-TTCACATTCATCACAT
36175134 AGAATCCTAA
Statistics
Matches: 309, Mismatches: 11, Indels: 6
0.95 0.03 0.02
Matches are distributed among these distances:
46 1 0.00
47 163 0.53
49 145 0.47
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:36174938 original size:49 final size:49
Alignment explanation
Indices: 36174764--36175112 Score: 579
Period size: 49 Copynumber: 7.3 Consensus size: 49
36174754 CCCTTCGGGA
* * * * *
36174764 CTTATCACAT-T-TATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
36174811 CCTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
36174858 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
36174905 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
36174954 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
36175003 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
36175052 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
36175099 CTTATCTCATATAT
1 CTTATCACATATAT
36175113 GCATGTTCAC
Statistics
Matches: 288, Mismatches: 8, Indels: 10
0.94 0.03 0.03
Matches are distributed among these distances:
46 1 0.00
47 138 0.48
49 149 0.52
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.33
Consensus pattern (49 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:36174961 original size:96 final size:96
Alignment explanation
Indices: 36174764--36175112 Score: 594
Period size: 96 Copynumber: 3.6 Consensus size: 96
36174754 CCCTTCGGGA
* * * * * * *
36174764 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTATCAC--ATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
36174827 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
36174858 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
36174923 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
36174954 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
36175019 ACACTTTCACATTCATCACATCGGCCATTAGGC
64 ACACTTTCACATTCATCACATCGGCCATTAGGC
*
36175052 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCTCATATAT
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATAT
36175113 GCATGTTCAC
Statistics
Matches: 243, Mismatches: 8, Indels: 6
0.95 0.03 0.02
Matches are distributed among these distances:
94 48 0.20
96 99 0.41
98 96 0.40
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.33
Consensus pattern (96 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
ACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:36179071 original size:17 final size:18
Alignment explanation
Indices: 36179030--36179072 Score: 54
Period size: 17 Copynumber: 2.5 Consensus size: 18
36179020 TGCGACAGTT
*
36179030 GAATTCTAATAGCTATAG
1 GAATTCAAATAGCTATAG
*
36179048 GTA-TCAAATAGCTAT-G
1 GAATTCAAATAGCTATAG
36179064 GAATTCAAA
1 GAATTCAAA
36179073 ACTTAAGGTC
Statistics
Matches: 21, Mismatches: 3, Indels: 3
0.78 0.11 0.11
Matches are distributed among these distances:
16 3 0.14
17 16 0.76
18 2 0.10
ACGTcount: A:0.42, C:0.12, G:0.16, T:0.30
Consensus pattern (18 bp):
GAATTCAAATAGCTATAG
Found at i:36180745 original size:37 final size:37
Alignment explanation
Indices: 36180692--36180794 Score: 179
Period size: 37 Copynumber: 2.8 Consensus size: 37
36180682 CGAATAGTCC
*
36180692 CCACACGTAGTTATCGGGTCTTACCCGGACAAAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
*
36180729 CCACACGTAGTCATCGGGTCTTACCCGGACATAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
*
36180766 TCACACGTAGTCATCGGGTCTTACCCGGA
1 CCACACGTAGTCATCGGGTCTTACCCGGA
36180795 ATATATTTCC
Statistics
Matches: 63, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 63 1.00
ACGTcount: A:0.24, C:0.31, G:0.20, T:0.24
Consensus pattern (37 bp):
CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
Found at i:36181087 original size:48 final size:48
Alignment explanation
Indices: 36180964--36181515 Score: 1029
Period size: 48 Copynumber: 11.5 Consensus size: 48
36180954 CTAGCCGAAT
36180964 CACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
1 CACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
36181012 CACTTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
1 CAC-TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
36181061 CACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
1 CACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
*
36181109 CATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
1 CACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
*
36181157 CATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
1 CACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
36181205 CACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
1 CACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
36181253 CACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
1 CACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
36181301 CACTAGCCATTCGGCTTTACCACATATACA-ATCTCATACATATTTCA
1 CACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
36181348 CA-TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
1 CACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
*
36181395 CATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
1 CACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
*
36181443 CATTAGCCATTCGGCTTTACCACATATACATATCTCATACAT-TTTCA
1 CACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
*
36181490 CATTAGCCATTCGGCTTTACCACATA
1 CACTAGCCATTCGGCTTTACCACATA
36181516 CATATATATT
Statistics
Matches: 499, Mismatches: 2, Indels: 7
0.98 0.00 0.01
Matches are distributed among these distances:
46 27 0.05
47 69 0.14
48 355 0.71
49 48 0.10
ACGTcount: A:0.31, C:0.28, G:0.07, T:0.34
Consensus pattern (48 bp):
CACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
Found at i:36185135 original size:28 final size:29
Alignment explanation
Indices: 36185066--36185179 Score: 101
Period size: 28 Copynumber: 4.0 Consensus size: 29
36185056 ATAGCGCTCG
* *
36185066 ATTATAGAACTCGCACACATAGTGCCTCA
1 ATTAAAGAACTCGCACACAGAGTGCCTCA
36185095 ATTAAAGAACTCGCACACAGA-TGCCTCA
1 ATTAAAGAACTCGCACACAGAGTGCCTCA
* * * *
36185123 ATTACCA-ATCTCGCACACATA--GCTCTCG
1 ATTA-AAGAACTCGCACACAGAGTGC-CTCA
* * *
36185151 ATTGAAGAACTTGCACACACAGTGCCTCA
1 ATTAAAGAACTCGCACACAGAGTGCCTCA
36185180 TAATTCCAGC
Statistics
Matches: 68, Mismatches: 12, Indels: 10
0.76 0.13 0.11
Matches are distributed among these distances:
27 3 0.04
28 40 0.59
29 23 0.34
30 2 0.03
ACGTcount: A:0.34, C:0.30, G:0.14, T:0.22
Consensus pattern (29 bp):
ATTAAAGAACTCGCACACAGAGTGCCTCA
Found at i:36185260 original size:40 final size:40
Alignment explanation
Indices: 36185187--36185536 Score: 560
Period size: 40 Copynumber: 8.8 Consensus size: 40
36185177 TCATAATTCC
*
36185187 AGCACGAATGC-CTTCGAGG-TTTAGCCCGGATATATCACT
1 AGCACGAATGCTCTTCG-GGACTTAGCCCGGATATATCACT
* *
36185226 AGCACGAATGCTCTTTGGGACTTAGCCCGAATATATCACT
1 AGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCACT
*
36185266 AGCACGAATGCTCTTCGGGACTTAGCCCGGCTATATCACT
1 AGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCACT
*
36185306 AGCACGAATGCTCTTTGGGACTTAGCCCGGATATATCACT
1 AGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCACT
*
36185346 AGCACGAATGCTCTTCGGGACTTAGCCCGGCTATATCACT
1 AGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCACT
*
36185386 AGCACGAATACTCTTCGGGACTTAGCCCGGATATATCACT
1 AGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCACT
* * * *
36185426 AGCACGAATGCTCTTCGGGACTTGGCCCGGACATAACACC
1 AGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCACT
* *
36185466 AGCACGAATGCTCTTCGGTACTTAGCCCGGCTATATCACT
1 AGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCACT
36185506 AGCACGAATGCTCTTCGGGACTTAGCCCGGA
1 AGCACGAATGCTCTTCGGGACTTAGCCCGGA
36185537 CGCACGGATG
Statistics
Matches: 284, Mismatches: 25, Indels: 3
0.91 0.08 0.01
Matches are distributed among these distances:
39 13 0.05
40 271 0.95
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (40 bp):
AGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCACT
Found at i:36185559 original size:30 final size:31
Alignment explanation
Indices: 36185507--36185565 Score: 102
Period size: 31 Copynumber: 1.9 Consensus size: 31
36185497 TATATCACTA
36185507 GCACGAATGCTCTTCGGGACTTAGCCCGGAC
1 GCACGAATGCTCTTCGGGACTTAGCCCGGAC
*
36185538 GCACGGATGCTCTTC-GGACTTAGCCCGG
1 GCACGAATGCTCTTCGGGACTTAGCCCGG
36185566 CTATATAACT
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
30 13 0.48
31 14 0.52
ACGTcount: A:0.17, C:0.32, G:0.31, T:0.20
Consensus pattern (31 bp):
GCACGAATGCTCTTCGGGACTTAGCCCGGAC
Found at i:36186894 original size:37 final size:37
Alignment explanation
Indices: 36186841--36186980 Score: 253
Period size: 37 Copynumber: 3.8 Consensus size: 37
36186831 CGAATAGTCC
* *
36186841 CCACACGTAGTTATCGGGTCTTACCCGGACAAAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACATAATCT
*
36186878 CCACACGTAGTCATCGGGTCATACCCGGACATAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACATAATCT
36186915 CCACACGTAGTCATCGGGTCTTACCCGGACATAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACATAATCT
36186952 CCACACGTAGTCATCGGGTCTTACCCGGA
1 CCACACGTAGTCATCGGGTCTTACCCGGA
36186981 ATATATTTCC
Statistics
Matches: 99, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 99 1.00
ACGTcount: A:0.25, C:0.32, G:0.20, T:0.23
Consensus pattern (37 bp):
CCACACGTAGTCATCGGGTCTTACCCGGACATAATCT
Found at i:36187204 original size:48 final size:48
Alignment explanation
Indices: 36187150--36187463 Score: 529
Period size: 48 Copynumber: 6.5 Consensus size: 48
36187140 CTAGCCGAAT
*
36187150 CACTAGCCATTCGGCTTTACCACATATACATATCTCATACATCTTTCA
1 CACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
36187198 CACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
1 CACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
* ** *
36187246 CACAAGCCATTCGAATTTACCACGTATACATATCTCATACATATTTCA
1 CACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
*
36187294 CACTAGCCATTCGGCTTTACCACATATACACATCTCATACATATTTCA
1 CACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
* *
36187342 CATTAGCCATTCGGCTTTACCACATATACACATCTCATACATATTTCA
1 CACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
* *
36187390 CATTAGCCATTCGGCTTTACCACATATACATATCTCATACATGTTTCA
1 CACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
*
36187438 CATTAGCCATTCGGCTTTACCACATA
1 CACTAGCCATTCGGCTTTACCACATA
36187464 CATATATATT
Statistics
Matches: 253, Mismatches: 13, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
48 253 1.00
ACGTcount: A:0.31, C:0.29, G:0.07, T:0.33
Consensus pattern (48 bp):
CACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
Found at i:36198348 original size:27 final size:27
Alignment explanation
Indices: 36198318--36198369 Score: 104
Period size: 27 Copynumber: 1.9 Consensus size: 27
36198308 GTCCTTAGGC
36198318 TGTGTGGCAAATTAAATTCAAAAATGT
1 TGTGTGGCAAATTAAATTCAAAAATGT
36198345 TGTGTGGCAAATTAAATTCAAAAAT
1 TGTGTGGCAAATTAAATTCAAAAAT
36198370 TAGGTGCAGA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.42, C:0.08, G:0.17, T:0.33
Consensus pattern (27 bp):
TGTGTGGCAAATTAAATTCAAAAATGT
Found at i:36198444 original size:13 final size:13
Alignment explanation
Indices: 36198426--36198459 Score: 59
Period size: 13 Copynumber: 2.6 Consensus size: 13
36198416 CTATGCCCCT
36198426 CACACGGTCGAGA
1 CACACGGTCGAGA
*
36198439 CACACGGCCGAGA
1 CACACGGTCGAGA
36198452 CACACGGT
1 CACACGGT
36198460 AAAGTCTTTG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.29, C:0.35, G:0.29, T:0.06
Consensus pattern (13 bp):
CACACGGTCGAGA
Found at i:36205331 original size:34 final size:34
Alignment explanation
Indices: 36205285--36205349 Score: 121
Period size: 34 Copynumber: 1.9 Consensus size: 34
36205275 TCAGAAGGGG
36205285 CTAATCTCCCAGTGACATTTAATCAAGCATTGCA
1 CTAATCTCCCAGTGACATTTAATCAAGCATTGCA
*
36205319 CTAATCTTCCAGTGACATTTAATCAAGCATT
1 CTAATCTCCCAGTGACATTTAATCAAGCATT
36205350 AATGGCCCAT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 30 1.00
ACGTcount: A:0.32, C:0.25, G:0.11, T:0.32
Consensus pattern (34 bp):
CTAATCTCCCAGTGACATTTAATCAAGCATTGCA
Found at i:36209909 original size:24 final size:24
Alignment explanation
Indices: 36209871--36209927 Score: 87
Period size: 24 Copynumber: 2.4 Consensus size: 24
36209861 CTTCAATTTG
*
36209871 ATTCAATTCCAGAACTAAACATTA
1 ATTCAGTTCCAGAACTAAACATTA
* *
36209895 ATTTAGTTCCCGAACTAAACATTA
1 ATTCAGTTCCAGAACTAAACATTA
36209919 ATTCAGTTC
1 ATTCAGTTC
36209928 AATTTATCAA
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 29 1.00
ACGTcount: A:0.39, C:0.21, G:0.07, T:0.33
Consensus pattern (24 bp):
ATTCAGTTCCAGAACTAAACATTA
Found at i:36229472 original size:2 final size:2
Alignment explanation
Indices: 36229465--36229507 Score: 68
Period size: 2 Copynumber: 21.5 Consensus size: 2
36229455 TGTTTAGGAA
* *
36229465 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG TG AG AG TG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
36229507 A
1 A
36229508 ACAGCCAAAA
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.47, C:0.00, G:0.49, T:0.05
Consensus pattern (2 bp):
AG
Found at i:36231952 original size:30 final size:30
Alignment explanation
Indices: 36231918--36231981 Score: 119
Period size: 30 Copynumber: 2.1 Consensus size: 30
36231908 TTTATGGCTA
36231918 ATTTGTGTGTTTCAAGTTGATTGGCATGAG
1 ATTTGTGTGTTTCAAGTTGATTGGCATGAG
*
36231948 ATTTGTGTGTTTCAAGTTGATTGGTATGAG
1 ATTTGTGTGTTTCAAGTTGATTGGCATGAG
36231978 ATTT
1 ATTT
36231982 AAGATTCAAT
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 33 1.00
ACGTcount: A:0.20, C:0.05, G:0.28, T:0.47
Consensus pattern (30 bp):
ATTTGTGTGTTTCAAGTTGATTGGCATGAG
Found at i:36242321 original size:266 final size:256
Alignment explanation
Indices: 36241845--36242355 Score: 783
Period size: 266 Copynumber: 2.0 Consensus size: 256
36241835 ATCATCTTCT
* *
36241845 CCATCCAGCCGAAACTAGCATGGACACCATGTCTAGGGTTTGGTAAGCTCATTTGTACGTGATCC
1 CCATCCAGCCGAAACTAGCATGGACACCATGTCTAAGGTTTGGTAAGCTCATTTGTAAGTGATCC
* * * *
36241910 TAAGCCCCGTTTTTAATGTTCTTTACATTTTTTATGTACCAGTAACATGGTCTACTCATTTCTAC
66 TAAGCCCCATTTTTAATGTTCTTTACATTTTTGAAGTACCAGTAACATGATCTACTCATTTCTAC
*
36241975 CATTATTTTGAGCTAGGGTTTATGCTAAAAAATTTACCCATGAGTTACATGCTTGTATTTTGATG
131 CATTATTTTGAGCTAGGGTTTATGCTAAAAAATTTACCCATGAGTGACATGCTTGTATTTTGATG
*
36242040 TCTAATGGGAGAAAATGAGTGTTAGGTGTTAAATAAATGACTTTTACTAAACAATTTTCGG
196 TCTAATGGGAGAAAATGAGTGTTAGGTGTTAAAAAAATGACTTTTACTAAACAATTTTCGG
36242101 CCATCCAGCCGAAACTAGCATGGACACCATGTCTAAGGTTTGGTTCAAGCTTCCTAGCTCATTTG
1 CCATCCAGCCGAAACTAGCATGGACACCATGTCTAAGGTTTGG-T--A-------AGCTCATTTG
* *
36242166 TAAGTGAT-CTCGAGCCCCATTTTTAATGTTCTTTACATTTTTGAAGT-CCTGGTAACATGATCT
56 TAAGTGATCCT-AAGCCCCATTTTTAATGTTCTTTACATTTTTGAAGTACC-AGTAACATGATCT
*
36242229 ACTCATTTCTACCATTATTTTGAGCTAGGGTTTATGTTAAAAAATTTACCCATGAGTGACATGCT
119 ACTCATTTCTACCATTATTTTGAGCTAGGGTTTATGCTAAAAAATTTACCCATGAGTGACATGCT
* *
36242294 TGTATTTTGATGTTTAATGGTAGAAAATGAGTGTTAGGTGTTAAAAAAATGACTTTTACTAA
184 TGTATTTTGATGTCTAATGGGAGAAAATGAGTGTTAGGTGTTAAAAAAATGACTTTTACTAA
36242356 GCGATTTTTG
Statistics
Matches: 230, Mismatches: 13, Indels: 14
0.89 0.05 0.05
Matches are distributed among these distances:
256 42 0.18
257 1 0.00
259 1 0.00
265 4 0.02
266 182 0.79
ACGTcount: A:0.28, C:0.17, G:0.18, T:0.37
Consensus pattern (256 bp):
CCATCCAGCCGAAACTAGCATGGACACCATGTCTAAGGTTTGGTAAGCTCATTTGTAAGTGATCC
TAAGCCCCATTTTTAATGTTCTTTACATTTTTGAAGTACCAGTAACATGATCTACTCATTTCTAC
CATTATTTTGAGCTAGGGTTTATGCTAAAAAATTTACCCATGAGTGACATGCTTGTATTTTGATG
TCTAATGGGAGAAAATGAGTGTTAGGTGTTAAAAAAATGACTTTTACTAAACAATTTTCGG
Found at i:36243054 original size:46 final size:46
Alignment explanation
Indices: 36242985--36243076 Score: 157
Period size: 46 Copynumber: 2.0 Consensus size: 46
36242975 GAAAAGAGAA
36242985 AATCCCGGTTGAATAAAAAGGGATGTCAGATGGATAAATCATTGTT
1 AATCCCGGTTGAATAAAAAGGGATGTCAGATGGATAAATCATTGTT
* * *
36243031 AATCCCGGTTGAATAAAATGGGATGTCCGATGGATAAATTATTGTT
1 AATCCCGGTTGAATAAAAAGGGATGTCAGATGGATAAATCATTGTT
36243077 TATATAACAT
Statistics
Matches: 43, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
46 43 1.00
ACGTcount: A:0.35, C:0.11, G:0.24, T:0.30
Consensus pattern (46 bp):
AATCCCGGTTGAATAAAAAGGGATGTCAGATGGATAAATCATTGTT
Found at i:36247686 original size:107 final size:108
Alignment explanation
Indices: 36247546--36247761 Score: 425
Period size: 107 Copynumber: 2.0 Consensus size: 108
36247536 TGAATTTCTA
36247546 AAGTCAGAATAGGGGATTCGGAAATTGCTCTGACCCTATTCCACCAAAACTCAAATTTCTCATAA
1 AAGTCAGAATAGGGGATTCGGAAATTGCTCTGACCCTATTCCACCAAAACTCAAATTTCTCATAA
36247611 AATACAACTCATTTACTGTTTTGTTTCTT-CATATGAAAATAG
66 AATACAACTCATTTACTGTTTTGTTTCTTCCATATGAAAATAG
36247653 AAGTCAGAATAGGGGATTCGGAAATTGCTCTGACCCTATTCCACCAAAACTCAAATTTCTCATAA
1 AAGTCAGAATAGGGGATTCGGAAATTGCTCTGACCCTATTCCACCAAAACTCAAATTTCTCATAA
36247718 AATACAACTCATTTACTGTTTTGTTTCTTCCATATGAAAATAG
66 AATACAACTCATTTACTGTTTTGTTTCTTCCATATGAAAATAG
36247761 A
1 A
36247762 CTCAATAAGC
Statistics
Matches: 108, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
107 94 0.87
108 14 0.13
ACGTcount: A:0.35, C:0.20, G:0.13, T:0.32
Consensus pattern (108 bp):
AAGTCAGAATAGGGGATTCGGAAATTGCTCTGACCCTATTCCACCAAAACTCAAATTTCTCATAA
AATACAACTCATTTACTGTTTTGTTTCTTCCATATGAAAATAG
Found at i:36257987 original size:19 final size:19
Alignment explanation
Indices: 36257963--36258012 Score: 100
Period size: 19 Copynumber: 2.6 Consensus size: 19
36257953 CGGCCTGAGG
36257963 ACATGGGCGTGTTGAAGAC
1 ACATGGGCGTGTTGAAGAC
36257982 ACATGGGCGTGTTGAAGAC
1 ACATGGGCGTGTTGAAGAC
36258001 ACATGGGCGTGT
1 ACATGGGCGTGT
36258013 CCTTGTGTCC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 31 1.00
ACGTcount: A:0.24, C:0.16, G:0.38, T:0.22
Consensus pattern (19 bp):
ACATGGGCGTGTTGAAGAC
Found at i:36269487 original size:116 final size:116
Alignment explanation
Indices: 36269281--36269501 Score: 345
Period size: 116 Copynumber: 1.9 Consensus size: 116
36269271 AAATTGAATG
* *
36269281 AAATAATTGTATAGACCGGAAATTGGATCAAACCAGAGATAATGAGGGAAAAGCAAAATTTTTAA
1 AAATAATTGTATAGACCGGAAATTGGATCAAACCAGAGATAATGAGGGAAAACCAAAAATTTTAA
36269346 ATTAGTCCTTAAAGTTTAAAATTGTTTGATATTTTTCCCATATAGGTTCAT
66 ATTAGTCCTTAAAGTTTAAAATTGTTTGATATTTTTCCCATATAGGTTCAT
* * *
36269397 AAATAATTGTATAGACTGGTAATTGGATCAAATCAGAGATAATCG-GGGAAAACCAAAAATTTTA
1 AAATAATTGTATAGACCGGAAATTGGATCAAACCAGAGATAAT-GAGGGAAAACCAAAAATTTTA
* * * *
36269461 GATTAGTCCTTAAAGTTTCAACTTGTTTGCTATTTTTCCCA
65 AATTAGTCCTTAAAGTTTAAAATTGTTTGATATTTTTCCCA
36269502 GGTATGTTCA
Statistics
Matches: 95, Mismatches: 9, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
116 94 0.99
117 1 0.01
ACGTcount: A:0.38, C:0.12, G:0.16, T:0.34
Consensus pattern (116 bp):
AAATAATTGTATAGACCGGAAATTGGATCAAACCAGAGATAATGAGGGAAAACCAAAAATTTTAA
ATTAGTCCTTAAAGTTTAAAATTGTTTGATATTTTTCCCATATAGGTTCAT
Found at i:36273073 original size:25 final size:25
Alignment explanation
Indices: 36273026--36273074 Score: 71
Period size: 25 Copynumber: 2.0 Consensus size: 25
36273016 AAACTAAAAA
*
36273026 TACTGTAGATAGTATATTCTGAAAC
1 TACTGTAGATAGTATACTCTGAAAC
* *
36273051 TACTGTAGGTAGTATACTGTGAAA
1 TACTGTAGATAGTATACTCTGAAA
36273075 ACACTCTAAA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.35, C:0.10, G:0.20, T:0.35
Consensus pattern (25 bp):
TACTGTAGATAGTATACTCTGAAAC
Found at i:36280381 original size:17 final size:17
Alignment explanation
Indices: 36280359--36280399 Score: 64
Period size: 17 Copynumber: 2.4 Consensus size: 17
36280349 TGAATTCTAG
36280359 TAGCTATAACAATCAAA
1 TAGCTATAACAATCAAA
**
36280376 TAGCTATAATGATCAAA
1 TAGCTATAACAATCAAA
36280393 TAGCTAT
1 TAGCTAT
36280400 GGAATTCAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
17 22 1.00
ACGTcount: A:0.46, C:0.15, G:0.10, T:0.29
Consensus pattern (17 bp):
TAGCTATAACAATCAAA
Found at i:36285589 original size:39 final size:39
Alignment explanation
Indices: 36285495--36285654 Score: 178
Period size: 39 Copynumber: 4.1 Consensus size: 39
36285485 TATTACAGAT
* * *
36285495 TATAATGAGATCTAGCATTTGTTGCAGATCCTCGAGTAA
1 TATAATGAGATCTAGCCTTTGTTGCAGATTCTCGGGTAA
** *
36285534 TATAACAAGATCTAGCCTTTGTTGCAGATTCTTGGGTAA
1 TATAATGAGATCTAGCCTTTGTTGCAGATTCTCGGGTAA
* * * **
36285573 TATAATGAGATCTAGCCTCTATTGCAAATTCTTAGGTAA
1 TATAATGAGATCTAGCCTTTGTTGCAGATTCTCGGGTAA
* **
36285612 TATAATGAGATCTAACCCTTT-TTGTGGATTCTCGGGTAA
1 TATAATGAGATCT-AGCCTTTGTTGCAGATTCTCGGGTAA
36285651 TATA
1 TATA
36285655 TGACATAGGT
Statistics
Matches: 101, Mismatches: 19, Indels: 2
0.83 0.16 0.02
Matches are distributed among these distances:
39 96 0.95
40 5 0.05
ACGTcount: A:0.30, C:0.15, G:0.19, T:0.36
Consensus pattern (39 bp):
TATAATGAGATCTAGCCTTTGTTGCAGATTCTCGGGTAA
Found at i:36290337 original size:46 final size:46
Alignment explanation
Indices: 36290188--36290548 Score: 184
Period size: 48 Copynumber: 7.6 Consensus size: 46
36290178 TTTGTGTGCT
* * *
36290188 AGTGTAAAACATGTCTGGG-CATGCATCGGCCAC-ATTATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGA-GATGAGAGCC
* * ** * *
36290233 AGTGTAAGACCATGTTTGGGACATGTCATCAGTATTGAGATGAGAGCT
1 AGTGTAAGA-CATGTCTGGGACATG-CATCGGCCTCGAGATGAGAGCC
36290281 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATGTA-AGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATG-AGAGCC
* * * * * *
36290327 AGTTTAAGACATGCCTGGGACATGCATTGG-CTACAAGAT--GTGTC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCT-CGAGATGAGAGCC
* * * * *
36290371 AGTGTAAGACCATGTTTGGGATATGGCATCGACACGT-GTAGA-G-GTGTC
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGC-C-TCG-AGATGAGAGCC
* * * * *
36290419 AGCGTAAGACCATGTCTGGGACATGGCATCGACAC-GGATATGTGAGAGCT
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGC-CTCGAGA--TGAGAGCC
* * ** * *
36290469 AGTGTAAGACTATGTCTGGGACATGACGTCGGCCTTGATTTCGATAGTC
1 AGTGTAAGAC-ATGTCTGGGACATG-CATCGGCCTCGAGAT-GAGAGCC
*
36290518 AGTGTAAGACCATGTTTGGGACATGACATCG
1 AGTGTAAGA-CATGTCTGGGACATG-CATCG
36290549 ACTTGATGGA
Statistics
Matches: 247, Mismatches: 45, Indels: 44
0.74 0.13 0.13
Matches are distributed among these distances:
44 10 0.04
45 21 0.09
46 63 0.26
47 20 0.08
48 64 0.26
49 37 0.15
50 32 0.13
ACGTcount: A:0.27, C:0.18, G:0.30, T:0.25
Consensus pattern (46 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATGAGAGCC
Found at i:36292106 original size:35 final size:35
Alignment explanation
Indices: 36292065--36292131 Score: 125
Period size: 35 Copynumber: 1.9 Consensus size: 35
36292055 ACATACATAG
*
36292065 ATTCACAATATAACATTTATAATTATTTAAACTAA
1 ATTCACAATATAACATTTATAATGATTTAAACTAA
36292100 ATTCACAATATAACATTTATAATGATTTAAAC
1 ATTCACAATATAACATTTATAATGATTTAAAC
36292132 ATAATTACCA
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 31 1.00
ACGTcount: A:0.48, C:0.12, G:0.01, T:0.39
Consensus pattern (35 bp):
ATTCACAATATAACATTTATAATGATTTAAACTAA
Found at i:36298434 original size:40 final size:40
Alignment explanation
Indices: 36298361--36298440 Score: 106
Period size: 40 Copynumber: 2.0 Consensus size: 40
36298351 ACACACTATG
* * *
36298361 TGGGGATAAAATCGACCCACCCATCCCTGCACACCGTAAA
1 TGGGGATAAAATCGACCCACCCAACCCTACACACCATAAA
* **
36298401 TGGGGATATAATCGACCCATTCAACCCTACACACCATAAA
1 TGGGGATAAAATCGACCCACCCAACCCTACACACCATAAA
36298441 GTACCGCATC
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
40 34 1.00
ACGTcount: A:0.35, C:0.33, G:0.15, T:0.17
Consensus pattern (40 bp):
TGGGGATAAAATCGACCCACCCAACCCTACACACCATAAA
Found at i:36305643 original size:8 final size:8
Alignment explanation
Indices: 36305632--36305656 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
36305622 TGGTTAAGAT
36305632 GTGTGTTG
1 GTGTGTTG
36305640 GTGTGTTG
1 GTGTGTTG
36305648 GTGTGTTG
1 GTGTGTTG
36305656 G
1 G
36305657 AGGTCTAGAG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.00, C:0.00, G:0.52, T:0.48
Consensus pattern (8 bp):
GTGTGTTG
Found at i:36310182 original size:16 final size:16
Alignment explanation
Indices: 36310161--36310198 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
36310151 ATTTTTCTCA
*
36310161 TAAAAATAT-TAATATT
1 TAAAAATATAAAATA-T
36310177 TAAAAATATAAAATAT
1 TAAAAATATAAAATAT
36310193 TAAAAA
1 TAAAAA
36310199 CTTTTATAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
16 16 0.80
17 4 0.20
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (16 bp):
TAAAAATATAAAATAT
Found at i:36310235 original size:23 final size:23
Alignment explanation
Indices: 36310193--36310239 Score: 69
Period size: 23 Copynumber: 2.0 Consensus size: 23
36310183 TATAAAATAT
36310193 TAAAAACTTTTATAAAATTATAAA
1 TAAAAAC-TTTATAAAATTATAAA
36310217 TAAAAAC-TTATAAATATTATAAA
1 TAAAAACTTTATAAA-ATTATAAA
36310240 AACTATAAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
22 7 0.32
23 8 0.36
24 7 0.32
ACGTcount: A:0.60, C:0.04, G:0.00, T:0.36
Consensus pattern (23 bp):
TAAAAACTTTATAAAATTATAAA
Found at i:36310240 original size:19 final size:19
Alignment explanation
Indices: 36310216--36310270 Score: 69
Period size: 19 Copynumber: 2.9 Consensus size: 19
36310206 AAAATTATAA
*
36310216 ATAAAAACTTATAAATATT
1 ATAAAAACTTATAAAAATT
36310235 ATAAAAAC-TATAAAAATT
1 ATAAAAACTTATAAAAATT
*
36310253 CTAATAAA-TTATAAAAAT
1 ATAA-AAACTTATAAAAAT
36310271 AAAAAAAACC
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
18 12 0.38
19 20 0.62
ACGTcount: A:0.62, C:0.05, G:0.00, T:0.33
Consensus pattern (19 bp):
ATAAAAACTTATAAAAATT
Found at i:36310251 original size:20 final size:19
Alignment explanation
Indices: 36310171--36310271 Score: 59
Period size: 19 Copynumber: 5.2 Consensus size: 19
36310161 TAAAAATATT
36310171 AATATTTAAAAA-TAT-AA
1 AATATTTAAAAACTATAAA
36310188 AATA-TTAAAAACTTTTATAAA
1 AATATTTAAAAAC---TATAAA
** *
36310209 ATTATAAATAAAAACT-TATA
1 A--ATATTTAAAAACTATAAA
36310229 AATATTATAAAAACTATAAA
1 AATATT-TAAAAACTATAAA
* *
36310249 AAT-TCTAATAAATTATAAA
1 AATATTTAA-AAACTATAAA
36310268 AATA
1 AATA
36310272 AAAAAAACCA
Statistics
Matches: 65, Mismatches: 7, Indels: 21
0.70 0.08 0.23
Matches are distributed among these distances:
16 7 0.11
17 4 0.06
18 6 0.09
19 21 0.32
20 13 0.20
21 4 0.06
23 3 0.05
24 7 0.11
ACGTcount: A:0.61, C:0.04, G:0.00, T:0.35
Consensus pattern (19 bp):
AATATTTAAAAACTATAAA
Found at i:36310898 original size:10 final size:9
Alignment explanation
Indices: 36310879--36311021 Score: 54
Period size: 9 Copynumber: 14.8 Consensus size: 9
36310869 TATAAAGTTA
36310879 AAAAATTAT
1 AAAAATTAT
36310888 AAAAATATAT
1 AAAAAT-TAT
**
36310898 ATTAATTATT
1 AAAAATTA-T
**
36310908 AGTAATTAT
1 AAAAATTAT
*
36310917 AAAACTTAT
1 AAAAATTAT
*
36310926 AAAAACTCATT
1 AAAAA-TTA-T
* * *
36310937 ATAAGTTCT
1 AAAAATTAT
36310946 AATAAATTAT
1 AA-AAATTAT
*
36310956 AAAAAATTGT
1 -AAAAATTAT
*
36310966 AAAATTTAT
1 AAAAATTAT
36310975 AATAAAATTAT
1 -A-AAAATTAT
36310986 AAAATATTA-
1 AAAA-ATTAT
*
36310995 AAACTAAATAT
1 AAA--AATTAT
* *
36311006 AGAATTTAT
1 AAAAATTAT
36311015 AAAAATT
1 AAAAATT
36311022 CATATACTGG
Statistics
Matches: 97, Mismatches: 25, Indels: 24
0.66 0.17 0.16
Matches are distributed among these distances:
9 43 0.44
10 38 0.39
11 16 0.16
ACGTcount: A:0.57, C:0.03, G:0.03, T:0.37
Consensus pattern (9 bp):
AAAAATTAT
Found at i:36310983 original size:20 final size:19
Alignment explanation
Indices: 36310952--36311019 Score: 68
Period size: 20 Copynumber: 3.5 Consensus size: 19
36310942 TTCTAATAAA
*
36310952 TTATAAAAAATTGTAAAAT
1 TTATAAAAAATTATAAAAT
36310971 TTATAATAAAATTATAAAAT
1 TTATAA-AAAATTATAAAAT
*
36310991 ATTA-AAACTAAA-TATAGAAT
1 -TTATAAA--AAATTATAAAAT
36311011 TTATAAAAA
1 TTATAAAAA
36311020 TTCATATACT
Statistics
Matches: 42, Mismatches: 2, Indels: 11
0.76 0.04 0.20
Matches are distributed among these distances:
18 2 0.05
19 10 0.24
20 24 0.57
21 6 0.14
ACGTcount: A:0.60, C:0.01, G:0.03, T:0.35
Consensus pattern (19 bp):
TTATAAAAAATTATAAAAT
Found at i:36311734 original size:9 final size:9
Alignment explanation
Indices: 36311720--36311952 Score: 78
Period size: 9 Copynumber: 25.7 Consensus size: 9
36311710 AAACGAATTT
36311720 TTTTTATAA
1 TTTTTATAA
*
36311729 TTTTTATAC
1 TTTTTATAA
*
36311738 TTTTTGT--
1 TTTTTATAA
*
36311745 TTTTTATGA
1 TTTTTATAA
*
36311754 TTTATTAGAA
1 TTT-TTATAA
* *
36311764 TTTATATAT
1 TTTTTATAA
*
36311773 TTTTTATGA
1 TTTTTATAA
36311782 TTTTT-TATA
1 TTTTTATA-A
36311791 TTTTT-TAA
1 TTTTTATAA
36311799 GTTTTTATAAA
1 -TTTTTAT-AA
* *
36311810 ATTTTAAATA
1 TTTTTATA-A
36311820 TGTTTTATAAA
1 T-TTTTAT-AA
*
36311831 TTGTATCATAA
1 TT-T-TTATAA
*
36311842 TTTAT-TAA
1 TTTTTATAA
36311850 TTTTTATAAA
1 TTTTTAT-AA
*
36311860 TTTTTGTAA
1 TTTTTATAA
* *
36311869 TATTTACAA
1 TTTTTATAA
* **
36311878 TTTTTTTTC
1 TTTTTATAA
36311887 TTTTTATAA
1 TTTTTATAA
*
36311896 CTTTATATCAA
1 -TTTTTAT-AA
36311907 -TTTTAT--
1 TTTTTATAA
36311913 TTTTTAT--
1 TTTTTATAA
36311920 TTTTT-T-A
1 TTTTTATAA
36311927 TTTTTA-ACA
1 TTTTTATA-A
36311936 TTTTTATGATA
1 TTTTTAT-A-A
36311947 TTTTTA
1 TTTTTA
36311953 ATGATTTCTA
Statistics
Matches: 166, Mismatches: 35, Indels: 44
0.68 0.14 0.18
Matches are distributed among these distances:
6 1 0.01
7 22 0.13
8 9 0.05
9 76 0.46
10 30 0.18
11 24 0.14
12 4 0.02
ACGTcount: A:0.29, C:0.03, G:0.04, T:0.64
Consensus pattern (9 bp):
TTTTTATAA
Found at i:36311792 original size:19 final size:19
Alignment explanation
Indices: 36311719--36311797 Score: 69
Period size: 19 Copynumber: 4.4 Consensus size: 19
36311709 TAAACGAATT
36311719 TTTTTTAT-AATTTTTATA
1 TTTTTTATGAATTTTTATA
* *
36311737 -CTTTT-TG-TTTTTTATGA
1 TTTTTTATGAATTTTTAT-A
* *
36311754 TTTATTA-GAATTTATATA
1 TTTTTTATGAATTTTTATA
*
36311772 TTTTTTATGATTTTTTATA
1 TTTTTTATGAATTTTTATA
36311791 TTTTTTA
1 TTTTTTA
36311798 AGTTTTTATA
Statistics
Matches: 46, Mismatches: 9, Indels: 11
0.70 0.14 0.17
Matches are distributed among these distances:
16 8 0.17
17 5 0.11
18 11 0.24
19 22 0.48
ACGTcount: A:0.24, C:0.01, G:0.05, T:0.70
Consensus pattern (19 bp):
TTTTTTATGAATTTTTATA
Found at i:36311804 original size:19 final size:19
Alignment explanation
Indices: 36311744--36311804 Score: 63
Period size: 19 Copynumber: 3.3 Consensus size: 19
36311734 ATACTTTTTG
*
36311744 TTTTTTATGATTTATT-AGA
1 TTTTTTAT-ATTTTTTAAGA
* * *
36311763 ATTTATATATTTTTTATGA
1 TTTTTTATATTTTTTAAGA
36311782 TTTTTTATATTTTTTAAG-
1 TTTTTTATATTTTTTAAGA
36311800 TTTTT
1 TTTTT
36311805 ATAAAATTTT
Statistics
Matches: 34, Mismatches: 7, Indels: 3
0.77 0.16 0.07
Matches are distributed among these distances:
18 11 0.32
19 23 0.68
ACGTcount: A:0.25, C:0.00, G:0.07, T:0.69
Consensus pattern (19 bp):
TTTTTTATATTTTTTAAGA
Found at i:36311959 original size:21 final size:20
Alignment explanation
Indices: 36311925--36311965 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
36311915 TTTATTTTTT
*
36311925 TATTTTTAACATTTTTATGA
1 TATTTTTAACATTTCTATGA
*
36311945 TATTTTTAATGATTTCTATGA
1 TATTTTTAA-CATTTCTATGA
36311966 GAAAAAAATA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 9 0.50
21 9 0.50
ACGTcount: A:0.29, C:0.05, G:0.07, T:0.59
Consensus pattern (20 bp):
TATTTTTAACATTTCTATGA
Found at i:36319540 original size:20 final size:20
Alignment explanation
Indices: 36319515--36319555 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
36319505 GTGACCACAC
36319515 TCCCTACCCACACGGGCGTG
1 TCCCTACCCACACGGGCGTG
* *
36319535 TCCCTATCCACACGGGTGTG
1 TCCCTACCCACACGGGCGTG
36319555 T
1 T
36319556 AGCCCTGTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.15, C:0.39, G:0.24, T:0.22
Consensus pattern (20 bp):
TCCCTACCCACACGGGCGTG
Found at i:36327996 original size:60 final size:59
Alignment explanation
Indices: 36327862--36328054 Score: 223
Period size: 59 Copynumber: 3.3 Consensus size: 59
36327852 GGCCATCAGC
* ***
36327862 CACGGCCGTGTGTCCCGTAACACACGCCCGTGTGGAATCCCTAGGCCT-CAAATCAGTCA
1 CACGGCCGTGTGTCCCG-AACACACGCCCGTGTGGAAGCCCTAATTCTCCAAATCAGTCA
* * *
36327921 CACGGCCGTCTGTCCCGAAGCACACGCCCGTGTGGGAA-CCCTAATTTTCCAAATCAGTTA
1 CACGGCCGTGTGTCCCGAA-CACACGCCCGTGT-GGAAGCCCTAATTCTCCAAATCAGTCA
* * *
36327981 CACGGCCTTGTGTCCCATAACACACGCCCGTGTGGAAGCCTTAATTGC-CCAAA-CAGTCA
1 CACGGCCGTGTGTCCC-GAACACACGCCCGTGTGGAAGCCCTAATT-CTCCAAATCAGTCA
36328040 CACGGCCGTGTGTCC
1 CACGGCCGTGTGTCC
36328055 AATGGACATG
Statistics
Matches: 115, Mismatches: 13, Indels: 12
0.82 0.09 0.09
Matches are distributed among these distances:
58 2 0.02
59 58 0.50
60 53 0.46
61 2 0.02
ACGTcount: A:0.22, C:0.35, G:0.23, T:0.20
Consensus pattern (59 bp):
CACGGCCGTGTGTCCCGAACACACGCCCGTGTGGAAGCCCTAATTCTCCAAATCAGTCA
Found at i:36331000 original size:34 final size:34
Alignment explanation
Indices: 36330961--36331035 Score: 134
Period size: 34 Copynumber: 2.2 Consensus size: 34
36330951 CAACATTCAA
36330961 GCATACAAAACCTTACTAG-GACAACTATCAACAT
1 GCATACAAAACCTTACTAGTG-CAACTATCAACAT
36330995 GCATACAAAACCTTACTAGTGCAACTATCAACAT
1 GCATACAAAACCTTACTAGTGCAACTATCAACAT
36331029 GCATACA
1 GCATACA
36331036 CAAATAATCC
Statistics
Matches: 40, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
34 39 0.98
35 1 0.03
ACGTcount: A:0.43, C:0.27, G:0.09, T:0.21
Consensus pattern (34 bp):
GCATACAAAACCTTACTAGTGCAACTATCAACAT
Found at i:36348263 original size:17 final size:18
Alignment explanation
Indices: 36348241--36348275 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
36348231 AATTAGGTCG
36348241 TGTGGG-CCACACAGGCA
1 TGTGGGCCCACACAGGCA
*
36348258 TGTGGGCCCACACGGGCA
1 TGTGGGCCCACACAGGCA
36348276 GGCCACATAG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.20, C:0.31, G:0.37, T:0.11
Consensus pattern (18 bp):
TGTGGGCCCACACAGGCA
Found at i:36351520 original size:40 final size:40
Alignment explanation
Indices: 36351465--36351546 Score: 164
Period size: 40 Copynumber: 2.0 Consensus size: 40
36351455 AGGGAGTAAG
36351465 CATAAAGCTTAGTAAGTTGCATGTAAATAAATAACAACGT
1 CATAAAGCTTAGTAAGTTGCATGTAAATAAATAACAACGT
36351505 CATAAAGCTTAGTAAGTTGCATGTAAATAAATAACAACGT
1 CATAAAGCTTAGTAAGTTGCATGTAAATAAATAACAACGT
36351545 CA
1 CA
36351547 ACCATGCATA
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 42 1.00
ACGTcount: A:0.45, C:0.13, G:0.15, T:0.27
Consensus pattern (40 bp):
CATAAAGCTTAGTAAGTTGCATGTAAATAAATAACAACGT
Found at i:36352170 original size:144 final size:144
Alignment explanation
Indices: 36351922--36352204 Score: 356
Period size: 144 Copynumber: 2.0 Consensus size: 144
36351912 TGTCAAGGTC
* * * *
36351922 GATGCCATGTCCCAGACATAGTCTTACACTAGCTCTCGTCTCAATACTGATGCCATGTCCCAAAC
1 GATGCCATGTCCCAAACATAGTCTTACACTAGCTCTCGACACAATACCGATGCCATGTCCCAAAC
* * *
36351987 ATGGTCTTACACTGGCTCTCATAATGTAGCCAATACCATGTCCTAGGCATCATCTTACACTAGCA
66 ATGGTCTTACACTGGCTCTCATAATGTAGCCAACACCATGTCCCAGACATCATCTTACACTAGCA
36352052 CACATATCAATGCT
131 CACATATCAATGCT
* * * * * *
36352066 GATGCTATGTCCCAAACATGGTCTTACACTAGCTCTC-ACAACATTGCCGATGTCATGTTCCAAA
1 GATGCCATGTCCCAAACATAGTCTTACACTAGCTCTCGAC-ACAATACCGATGCCATGTCCCAAA
* * **
36352130 CATGGTCTTACACTGGCTCTCATATCATG-A-CCGACGCCATGTCCCAGACATGGTCTTACACTA
65 CATGGTCTTACACTGGCTCTCATA--ATGTAGCCAACACCATGTCCCAGACATCATCTTACACTA
*
36352193 GCGCACATATCA
128 GCACACATATCA
36352205 CCCAAATGTC
Statistics
Matches: 118, Mismatches: 18, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
143 1 0.01
144 113 0.96
145 1 0.01
146 3 0.03
ACGTcount: A:0.27, C:0.30, G:0.16, T:0.27
Consensus pattern (144 bp):
GATGCCATGTCCCAAACATAGTCTTACACTAGCTCTCGACACAATACCGATGCCATGTCCCAAAC
ATGGTCTTACACTGGCTCTCATAATGTAGCCAACACCATGTCCCAGACATCATCTTACACTAGCA
CACATATCAATGCT
Found at i:36352192 original size:96 final size:97
Alignment explanation
Indices: 36351873--36352194 Score: 318
Period size: 96 Copynumber: 3.4 Consensus size: 97
36351863 GGTAAATTGT
* * * * *
36351873 TGATGCCATGTCCCAAACATGGTCTTGCACTGGCT-T-ACATGTCA-AGGTCGATGCCATGTCCC
1 TGATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCACA--ACATA-GCCGATGCCATGTTCC
* *
36351935 AGACATAGTCTTACACTAGCTCTCGTCTCAAT-AC
63 AGACATAGTCTTACACTAGCTCTCATATCAATGAC
* * ** * *
36351969 TGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATAATGTAGCCAATACCATG-TCCTAG
1 TGATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCACAACATAGCCGATGCCATGTTCC-AG
* * *
36352033 GCATCA-TCTTACACTAGCACACATATCAATG-C
65 ACAT-AGTCTTACACTAGCTCTCATATCAATGAC
* * * *
36352065 TGATGCTATGTCCCAAACATGGTCTTACACTAGCTCTCACAACATTGCCGATGTCATGTTCCAAA
1 TGATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCACAACATAGCCGATGCCATGTTCCAGA
* *
36352130 CATGGTCTTACACTGGCTCTCATATC-ATGAC
66 CATAGTCTTACACTAGCTCTCATATCAATGAC
* * *
36352161 CGACGCCATGTCCCAGACATGGTCTTACACTAGC
1 TGATGCCATGTCCCAAACATGGTCTTACACTAGC
36352195 GCACATATCA
Statistics
Matches: 184, Mismatches: 33, Indels: 18
0.78 0.14 0.08
Matches are distributed among these distances:
95 5 0.03
96 171 0.93
97 6 0.03
98 2 0.01
ACGTcount: A:0.26, C:0.30, G:0.17, T:0.28
Consensus pattern (97 bp):
TGATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCACAACATAGCCGATGCCATGTTCCAGA
CATAGTCTTACACTAGCTCTCATATCAATGAC
Found at i:36352202 original size:48 final size:48
Alignment explanation
Indices: 36351874--36352204 Score: 278
Period size: 48 Copynumber: 6.9 Consensus size: 48
36351864 GTAAATTGTT
* * * * **
36351874 GATGCCATGTCCCAAACATGGTCTTGCACTGGCT-TACATGTCAAGGTC
1 GATGCCATGTCCCAAACATGGTCTTACACTAGCTCT-CATATCATGACC
* * * * *
36351922 GATGCCATGTCCCAGACATAGTCTTACACTAGCTCTCGTCTCAAT-ACT
1 GATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATATC-ATGACC
*
36351970 GATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATA--ATGTAGCC
1 GATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATATCATG-A-CC
* * * ** ** * * *
36352018 AATACCATGTCCTAGGCATCATCTTACACTAGCACACATATCAATG-CT
1 GATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATATC-ATGACC
* * *
36352066 GATGCTATGTCCCAAACATGGTCTTACACTAGCTCTCACAACATTG-CC
1 GATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATATCA-TGACC
* * *
36352114 GATGTCATGTTCCAAACATGGTCTTACACTGGCTCTCATATCATGACC
1 GATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATATCATGACC
* * * *
36352162 GACGCCATGTCCCAGACATGGTCTTACACTAGCGCACATATCA
1 GATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATATCA
36352205 CCCAAATGTC
Statistics
Matches: 220, Mismatches: 53, Indels: 20
0.75 0.18 0.07
Matches are distributed among these distances:
45 2 0.01
47 4 0.02
48 209 0.95
49 2 0.01
51 3 0.01
ACGTcount: A:0.27, C:0.30, G:0.17, T:0.27
Consensus pattern (48 bp):
GATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATATCATGACC
Found at i:36359397 original size:96 final size:95
Alignment explanation
Indices: 36359172--36359490 Score: 315
Period size: 96 Copynumber: 3.3 Consensus size: 95
36359162 GGGTAAATTA
* * * * * *
36359172 CTGATGCCATGTCCCAAACATGGTCTTACACAGGCTCACATGTCGA-AGCCGGTGCCATATCCCA
1 CTGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAT--ATAGCCGATGCCATGTCCCA
* *
36359236 GATATGGTCTTACACTAG-TCTCGTCA-CAATG
64 GACATGGTCTTACACTAGCTCTCAT-ATCAATG
* * *
36359267 -TCGATGCCATGTCCCAGGCATGATCTTACACTGGCTCTCATAATATGGCCGATGCCATGTCCCA
1 CT-GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCAT-ATATAGCCGATGCCATGTCCCA
* * *
36359331 GACATGGTCCTACACTAGCACACATATCAATG
64 GACATGGTCTTACACTAGCTCTCATATCAATG
* * * * *
36359363 CTGATGCCATGTCCCAGATATGGTCTTACACTGGCTCTCATCACATTGCCGATGCCATGTTCCAA
1 CTGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCAT-ATATAGCCGATGCCATGTCCCAG
* *
36359428 ACATGGTCTTACATTAGCTCTCATATC-GTGG
65 ACATGGTCTTACACTAGCTCTCATATCAAT-G
* * * *
36359459 CCGACGTCATGTCCCAGGCATGGTCTTACACT
1 CTGATGCCATGTCCCAGACATGGTCTTACACT
36359491 AACGCACATA
Statistics
Matches: 185, Mismatches: 32, Indels: 13
0.80 0.14 0.06
Matches are distributed among these distances:
94 2 0.01
95 67 0.36
96 115 0.62
97 1 0.01
ACGTcount: A:0.24, C:0.30, G:0.19, T:0.27
Consensus pattern (95 bp):
CTGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATATAGCCGATGCCATGTCCCAGA
CATGGTCTTACACTAGCTCTCATATCAATG
Found at i:36359473 original size:144 final size:142
Alignment explanation
Indices: 36359177--36359503 Score: 388
Period size: 144 Copynumber: 2.3 Consensus size: 142
36359167 AATTACTGAT
* * * *
36359177 GCCATGTCCCAAACATGGTCTTACAC-AGGCTCACATGTCGAAGCCGGTGCCATATCCCAGATAT
1 GCCATGTCCCAGACATGGTCTTACACTA-GCACACATATC-AAGCCGATGCCATATCCCAGATAT
* * ** *
36359241 GGTCTTACACTAGTCTCGTCACAATGTCGATGCCATGTCCCAGGCATGATCTTACACTGGCTCTC
64 GGTCTTACACTAGTCTCATCACAATGCCGATGCCATGTCCCAAACATGATCTTACACTAGCTCTC
*
36359306 ATAATATGGCCGAT
129 ATAATATGGCCGAC
* * *
36359320 GCCATGTCCCAGACATGGTCCTACACTAGCACACATATCAATGCTGATGCCATGTCCCAGATATG
1 GCCATGTCCCAGACATGGTCTTACACTAGCACACATATCAA-GCCGATGCCATATCCCAGATATG
* * * * *
36359385 GTCTTACACTGGCTCTCATCACATTGCCGATGCCATGTTCCAAACATGGTCTTACATTAGCTCTC
65 GTCTTACACTAG-TCTCATCACAATGCCGATGCCATGTCCCAAACATGATCTTACACTAGCTCTC
*
36359450 AT-ATCGTGGCCGAC
129 ATAAT-ATGGCCGAC
* * * *
36359464 GTCATGTCCCAGGCATGGTCTTACACTAACGCACATATCA
1 GCCATGTCCCAGACATGGTCTTACACTAGCACACATATCA
36359504 CCCAAATGTC
Statistics
Matches: 156, Mismatches: 24, Indels: 7
0.83 0.13 0.04
Matches are distributed among these distances:
142 2 0.01
143 66 0.42
144 88 0.56
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.26
Consensus pattern (142 bp):
GCCATGTCCCAGACATGGTCTTACACTAGCACACATATCAAGCCGATGCCATATCCCAGATATGG
TCTTACACTAGTCTCATCACAATGCCGATGCCATGTCCCAAACATGATCTTACACTAGCTCTCAT
AATATGGCCGAC
Found at i:36359502 original size:48 final size:48
Alignment explanation
Indices: 36359174--36359491 Score: 283
Period size: 48 Copynumber: 6.6 Consensus size: 48
36359164 GTAAATTACT
* * * *
36359174 GATGCCATGTCCCAAACATGGTCTTACAC-AGGCTCACATGTCGA-AGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTA-GCTCTCATATC-ATGGCC
* * * * *
36359222 GGTGCCATATCCCAGATATGGTCTTACACTAG-TCTCGTCA-CAAT-GTC
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCAT-ATC-ATGGCC
* * *
36359269 GATGCCATGTCCCAGGCATGATCTTACACTGGCTCTCATAAT-ATGGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCAT-ATCATGGCC
* * * *
36359317 GATGCCATGTCCCAGACATGGTCCTACACTAGCACACATATCAAT-GCT
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATC-ATGGCC
* * *
36359365 GATGCCATGTCCCAGATATGGTCTTACACTGGCTCTCATCA-CATTGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCAT-ATCATGGCC
* * * *
36359413 GATGCCATGTTCCAAACATGGTCTTACATTAGCTCTCATATCGTGGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCATGGCC
* * *
36359461 GACGTCATGTCCCAGGCATGGTCTTACACTA
1 GATGCCATGTCCCAGACATGGTCTTACACTA
36359492 ACGCACATAT
Statistics
Matches: 215, Mismatches: 44, Indels: 22
0.77 0.16 0.08
Matches are distributed among these distances:
47 41 0.19
48 170 0.79
49 4 0.02
ACGTcount: A:0.24, C:0.30, G:0.19, T:0.27
Consensus pattern (48 bp):
GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCATGGCC
Found at i:36363830 original size:17 final size:17
Alignment explanation
Indices: 36363810--36363844 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
36363800 AAAATACATG
*
36363810 TTTTTATAATTTATAAT
1 TTTTTATAATTTAAAAT
*
36363827 TTTTTATATTTTAAAAT
1 TTTTTATAATTTAAAAT
36363844 T
1 T
36363845 ATATATATTT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (17 bp):
TTTTTATAATTTAAAAT
Found at i:36364078 original size:33 final size:33
Alignment explanation
Indices: 36364041--36364103 Score: 83
Period size: 33 Copynumber: 1.9 Consensus size: 33
36364031 GCCTTATAAT
*
36364041 TATAATTAAATATAAA-ACATATAATATTTTTCA
1 TATAAATAAATATAAATA-ATATAATATTTTTCA
* *
36364074 TATAAATATATATAAATAATATTATATTTT
1 TATAAATAAATATAAATAATATAATATTTT
36364104 GTATTTTTTA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
33 25 0.96
34 1 0.04
ACGTcount: A:0.51, C:0.03, G:0.00, T:0.46
Consensus pattern (33 bp):
TATAAATAAATATAAATAATATAATATTTTTCA
Found at i:36364782 original size:22 final size:21
Alignment explanation
Indices: 36364748--36364790 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 21
36364738 TTATTTTATT
36364748 ATTAAATTAAATTTAAAATTA
1 ATTAAATTAAATTTAAAATTA
*
36364769 ATTATAATTTAATTTAAAATTA
1 ATTA-AATTAAATTTAAAATTA
36364791 TTAGTTAAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
21 4 0.20
22 16 0.80
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (21 bp):
ATTAAATTAAATTTAAAATTA
Found at i:36366236 original size:40 final size:39
Alignment explanation
Indices: 36366181--36366313 Score: 128
Period size: 40 Copynumber: 3.4 Consensus size: 39
36366171 CTAGTTTGGT
36366181 ACCCAGTGCCTCATCGGATAATTCAAAGTAGTAAATTGAC
1 ACCCAGTGCCTCATCGGATAA-TCAAAGTAGTAAATTGAC
* * ** *
36366221 ACCCAGTGTCTCATCGGTTAA--ACCGAAGTAAATTGAC
1 ACCCAGTGCCTCATCGGATAATCAAAGTAGTAAATTGAC
* * *
36366258 A-CCAGTGCCTCATCGAATAAATCCGAAGTAATAAATTGAC
1 ACCCAGTGCCTCATCGGAT-AAT-CAAAGTAGTAAATTGAC
* *
36366298 ACCAAGTGTCTCATCG
1 ACCCAGTGCCTCATCG
36366314 ACTCGAAGTC
Statistics
Matches: 73, Mismatches: 15, Indels: 9
0.75 0.15 0.09
Matches are distributed among these distances:
36 14 0.19
37 16 0.22
40 31 0.42
41 12 0.16
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (39 bp):
ACCCAGTGCCTCATCGGATAATCAAAGTAGTAAATTGAC
Found at i:36366260 original size:37 final size:38
Alignment explanation
Indices: 36366210--36366314 Score: 133
Period size: 37 Copynumber: 2.7 Consensus size: 38
36366200 AATTCAAAGT
**
36366210 AGTAAATTGACACCCAGTGTCTCATCGGTTAAA-CCGA
1 AGTAAATTGACACCCAGTGTCTCATCGAATAAATCCGA
*
36366247 AGTAAATTGACA-CCAGTGCCTCATCGAATAAATCCGA
1 AGTAAATTGACACCCAGTGTCTCATCGAATAAATCCGA
*
36366284 AGTAATAAATTGACACCAAGTGTCTCATCGA
1 AG---TAAATTGACACCCAGTGTCTCATCGA
36366315 CTCGAAGTCG
Statistics
Matches: 58, Mismatches: 5, Indels: 6
0.84 0.07 0.09
Matches are distributed among these distances:
36 17 0.29
37 18 0.31
40 10 0.17
41 13 0.22
ACGTcount: A:0.36, C:0.23, G:0.17, T:0.24
Consensus pattern (38 bp):
AGTAAATTGACACCCAGTGTCTCATCGAATAAATCCGA
Found at i:36369472 original size:19 final size:20
Alignment explanation
Indices: 36369448--36369497 Score: 57
Period size: 21 Copynumber: 2.5 Consensus size: 20
36369438 ATTCGGGACT
* *
36369448 AATTTGAAACAAA-TCAGAA
1 AATTTGAAAAAAAGTCACAA
*
36369467 AATTTGAGAAAAAAGTTACAA
1 AATTTGA-AAAAAAGTCACAA
36369488 AATTTGAAAA
1 AATTTGAAAA
36369498 CAGAGGTCAT
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
19 7 0.27
20 8 0.31
21 11 0.42
ACGTcount: A:0.58, C:0.06, G:0.12, T:0.24
Consensus pattern (20 bp):
AATTTGAAAAAAAGTCACAA
Found at i:36372345 original size:29 final size:29
Alignment explanation
Indices: 36372302--36372411 Score: 202
Period size: 29 Copynumber: 3.8 Consensus size: 29
36372292 CAAGATCCTT
36372302 CATTCAATTTCGGATGGATTCTTTTAAGC
1 CATTCAATTTCGGATGGATTCTTTTAAGC
* *
36372331 CATTTAATTTTGGATGGATTCTTTTAAGC
1 CATTCAATTTCGGATGGATTCTTTTAAGC
36372360 CATTCAATTTCGGATGGATTCTTTTAAGC
1 CATTCAATTTCGGATGGATTCTTTTAAGC
36372389 CATTCAATTTCGGATGGATTCTT
1 CATTCAATTTCGGATGGATTCTT
36372412 AGTCGTAATT
Statistics
Matches: 77, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
29 77 1.00
ACGTcount: A:0.24, C:0.15, G:0.17, T:0.44
Consensus pattern (29 bp):
CATTCAATTTCGGATGGATTCTTTTAAGC
Found at i:36377154 original size:3 final size:3
Alignment explanation
Indices: 36377142--36377209 Score: 54
Period size: 3 Copynumber: 23.3 Consensus size: 3
36377132 TTATTTTGGC
* *
36377142 TAT T-T TAT TAT TA- AAT TAAT TAAT T-T TAT TAT TAT TAC TA- TAT
1 TAT TAT TAT TAT TAT TAT T-AT T-AT TAT TAT TAT TAT TAT TAT TAT
* *
36377185 TAT TAC TAT TAC TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT T
36377210 CTCTAAATGG
Statistics
Matches: 53, Mismatches: 7, Indels: 10
0.76 0.10 0.14
Matches are distributed among these distances:
2 7 0.13
3 39 0.74
4 7 0.13
ACGTcount: A:0.35, C:0.04, G:0.00, T:0.60
Consensus pattern (3 bp):
TAT
Found at i:36377326 original size:3 final size:3
Alignment explanation
Indices: 36377311--36377366 Score: 103
Period size: 3 Copynumber: 18.7 Consensus size: 3
36377301 AAAAGCTTAG
*
36377311 ATT ATT ATC ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
36377359 ATT ATT AT
1 ATT ATT AT
36377367 CCTTTTAATT
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
3 51 1.00
ACGTcount: A:0.34, C:0.02, G:0.00, T:0.64
Consensus pattern (3 bp):
ATT
Found at i:36377469 original size:12 final size:12
Alignment explanation
Indices: 36377424--36377476 Score: 52
Period size: 12 Copynumber: 4.4 Consensus size: 12
36377414 TATTTTAAAC
*
36377424 TTTTATTTGTTT
1 TTTTATTTTTTT
* **
36377436 ATTTATTTACTT
1 TTTTATTTTTTT
*
36377448 TTTTAGTTTTTT
1 TTTTATTTTTTT
*
36377460 TTTTATTTTTCT
1 TTTTATTTTTTT
36377472 TTTTA
1 TTTTA
36377477 CTAGCTTGTT
Statistics
Matches: 32, Mismatches: 9, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
12 32 1.00
ACGTcount: A:0.13, C:0.04, G:0.04, T:0.79
Consensus pattern (12 bp):
TTTTATTTTTTT
Found at i:36382896 original size:48 final size:48
Alignment explanation
Indices: 36382839--36382974 Score: 191
Period size: 48 Copynumber: 2.8 Consensus size: 48
36382829 CATGGTAAGG
* ** * *
36382839 TGCCAATGCCATATCCTGGATATGGTCTTACATGGGATCACATATCGA
1 TGCCAATGCCATGTCCCAGAAATGGTCTTACATGAGATCACATATCGA
*
36382887 TGCCAATGCCATGTCCCAGAAAAGGTCTTACATGAGATCACATATCGA
1 TGCCAATGCCATGTCCCAGAAATGGTCTTACATGAGATCACATATCGA
* * *
36382935 TGCTAATGCCATGTCCCAGACATGGTCATACATGAGATCA
1 TGCCAATGCCATGTCCCAGAAATGGTCTTACATGAGATCA
36382975 TAAATAACCC
Statistics
Matches: 78, Mismatches: 10, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
48 78 1.00
ACGTcount: A:0.30, C:0.24, G:0.20, T:0.26
Consensus pattern (48 bp):
TGCCAATGCCATGTCCCAGAAATGGTCTTACATGAGATCACATATCGA
Found at i:36386211 original size:40 final size:40
Alignment explanation
Indices: 36386137--36386318 Score: 305
Period size: 40 Copynumber: 4.6 Consensus size: 40
36386127 AACCCAAGTA
* *
36386137 CCTTCGGGATTTAG-CCGGATATAG-CAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATG
* *
36386176 CCTTCGGGTCTTAGCCCGGATGTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
36386216 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
36386256 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
36386296 CCTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
36386319 CATTCGAATA
Statistics
Matches: 135, Mismatches: 6, Indels: 3
0.94 0.04 0.02
Matches are distributed among these distances:
39 12 0.09
40 122 0.90
41 1 0.01
ACGTcount: A:0.25, C:0.27, G:0.24, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
Found at i:36395747 original size:45 final size:44
Alignment explanation
Indices: 36395677--36395795 Score: 148
Period size: 45 Copynumber: 2.7 Consensus size: 44
36395667 TGAAATTAAA
* * *
36395677 AATCCTATCTCCCTGAAATTACAGTGGAGCAGATCGGAGATAACC
1 AATCCTATCTCCTTGAAGTTACAGTGGAGCAGATCGAAGAT-ACC
* * * * * *
36395722 AATCTTATCTCCTTGAAGTTGCAGTGGAACAGATTGAAGCTACT
1 AATCCTATCTCCTTGAAGTTACAGTGGAGCAGATCGAAGATACC
36395766 AATCCTATCTCCTTGAAGTTACAGTGGAGC
1 AATCCTATCTCCTTGAAGTTACAGTGGAGC
36395796 GGATTAAAGC
Statistics
Matches: 62, Mismatches: 12, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
44 29 0.47
45 33 0.53
ACGTcount: A:0.30, C:0.22, G:0.20, T:0.28
Consensus pattern (44 bp):
AATCCTATCTCCTTGAAGTTACAGTGGAGCAGATCGAAGATACC
Found at i:36395782 original size:44 final size:44
Alignment explanation
Indices: 36395618--36395834 Score: 175
Period size: 44 Copynumber: 4.9 Consensus size: 44
36395608 TACAGAAGAT
* * * *
36395618 CAGATTAAAGCTATAAA-CCATATCTCCCTAAAGTTGCAGTAGAG
1 CAGATTGAAGCTACAAATCC-TATCTCCCTGAAGTTGCAGTGGAG
* ** * * *
36395662 CAGGTTGAAATTAAAAATCCTATCTCCCTGAAATTACAGTGGAG
1 CAGATTGAAGCTACAAATCCTATCTCCCTGAAGTTGCAGTGGAG
* * * * * * *
36395706 CAGATCGGAGATAACCAATCTTATCTCCTTGAAGTTGCAGTGGAA
1 CAGATTGAAGCT-ACAAATCCTATCTCCCTGAAGTTGCAGTGGAG
* * *
36395751 CAGATTGAAGCTACTAATCCTATCTCCTTGAAGTTACAGTGGAG
1 CAGATTGAAGCTACAAATCCTATCTCCCTGAAGTTGCAGTGGAG
* * * ** *
36395795 CGGATTAAAGCGACAAATCCTATAACTCTGAAGTTGCAGT
1 CAGATTGAAGCTACAAATCCTATCTCCCTGAAGTTGCAGT
36395835 AGGTGGGATT
Statistics
Matches: 134, Mismatches: 37, Indels: 4
0.77 0.21 0.02
Matches are distributed among these distances:
44 98 0.73
45 36 0.27
ACGTcount: A:0.34, C:0.20, G:0.19, T:0.27
Consensus pattern (44 bp):
CAGATTGAAGCTACAAATCCTATCTCCCTGAAGTTGCAGTGGAG
Found at i:36396149 original size:11 final size:11
Alignment explanation
Indices: 36396119--36396151 Score: 52
Period size: 11 Copynumber: 3.2 Consensus size: 11
36396109 CCATGAGCAG
36396119 AAACTAAACCC
1 AAACTAAACCC
36396130 AAA--AAACCC
1 AAACTAAACCC
36396139 AAACTAAACCC
1 AAACTAAACCC
36396150 AA
1 AA
36396152 TCCCAAACCA
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
9 9 0.45
11 11 0.55
ACGTcount: A:0.61, C:0.33, G:0.00, T:0.06
Consensus pattern (11 bp):
AAACTAAACCC
Found at i:36396158 original size:17 final size:17
Alignment explanation
Indices: 36396136--36396170 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
36396126 ACCCAAAAAA
*
36396136 CCCAAACTAAACCCAAT
1 CCCAAACCAAACCCAAT
36396153 CCCAAACCAAACCCAAT
1 CCCAAACCAAACCCAAT
36396170 C
1 C
36396171 TAAGCAAATC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.46, C:0.46, G:0.00, T:0.09
Consensus pattern (17 bp):
CCCAAACCAAACCCAAT
Found at i:36397333 original size:18 final size:19
Alignment explanation
Indices: 36397312--36397351 Score: 57
Period size: 18 Copynumber: 2.2 Consensus size: 19
36397302 TATTAAATTA
*
36397312 ATTAATT-TTATTATTACT
1 ATTAATTGTTACTATTACT
36397330 ATT-ATTGTTACTATTACT
1 ATTAATTGTTACTATTACT
36397348 ATTA
1 ATTA
36397352 TTATTATTCT
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
17 3 0.16
18 16 0.84
ACGTcount: A:0.33, C:0.07, G:0.03, T:0.57
Consensus pattern (19 bp):
ATTAATTGTTACTATTACT
Found at i:36397334 original size:12 final size:12
Alignment explanation
Indices: 36397319--36397359 Score: 55
Period size: 12 Copynumber: 3.4 Consensus size: 12
36397309 TTAATTAATT
36397319 TTATTATTACTA
1 TTATTATTACTA
*
36397331 TTATTGTTACTA
1 TTATTATTACTA
* *
36397343 TTACTATTATTA
1 TTATTATTACTA
36397355 TTATT
1 TTATT
36397360 CTCTAAATGG
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
12 24 1.00
ACGTcount: A:0.29, C:0.07, G:0.02, T:0.61
Consensus pattern (12 bp):
TTATTATTACTA
Found at i:36404060 original size:23 final size:25
Alignment explanation
Indices: 36404029--36404079 Score: 61
Period size: 25 Copynumber: 2.1 Consensus size: 25
36404019 GTCAAACAGC
*
36404029 CGTATCACAC-ACC-CGTACCAGGT
1 CGTACCACACGACCGCGTACCAGGT
* *
36404052 CGTACCACACGGCCGTGTACCAGGT
1 CGTACCACACGACCGCGTACCAGGT
36404077 CGT
1 CGT
36404080 GTGCTAGGCT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
23 9 0.39
24 2 0.09
25 12 0.52
ACGTcount: A:0.22, C:0.37, G:0.24, T:0.18
Consensus pattern (25 bp):
CGTACCACACGACCGCGTACCAGGT
Found at i:36404891 original size:38 final size:38
Alignment explanation
Indices: 36404849--36404938 Score: 108
Period size: 38 Copynumber: 2.4 Consensus size: 38
36404839 GCTAGGCATT
* *
36404849 AAGCCTGAATAACATCGGCGCTAAGCCTACTAAACACA
1 AAGCCTGAATAACACCGGCACTAAGCCTACTAAACACA
** * **
36404887 AAGCCCAAATAACACCGGCACTAAGCCTGCTAGGCACA
1 AAGCCTGAATAACACCGGCACTAAGCCTACTAAACACA
*
36404925 AAACCTGAATAACA
1 AAGCCTGAATAACA
36404939 GTATAATTCA
Statistics
Matches: 42, Mismatches: 10, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
38 42 1.00
ACGTcount: A:0.41, C:0.30, G:0.16, T:0.13
Consensus pattern (38 bp):
AAGCCTGAATAACACCGGCACTAAGCCTACTAAACACA
Found at i:36415536 original size:42 final size:42
Alignment explanation
Indices: 36415459--36415619 Score: 119
Period size: 45 Copynumber: 3.7 Consensus size: 42
36415449 TTTTATCAAA
* *
36415459 TCACCGGCATTTAGCCTGCTAGGTTTAAAAACCTGAATTCAT
1 TCACCGGCATTTAGCCTGCTAGGCTCAAAAACCTGAATTCAT
* * *
36415501 TCACCGGCATTTCGCCTGCTAGGCTCGAAAGCCTGAATAGT-AT
1 TCACCGGCATTTAGCCTGCTAGGCTCAAAAACCTGAAT--TCAT
* * * ** *
36415544 CTCATCGGTATTATAGCCTTCTAGGCTCAAAGGCCCGAATAGT-AT
1 -TCACCGGCATT-TAGCCTGCTAGGCTCAAAAACCTGAAT--TCAT
* *
36415589 CTCACTGGCATTATAGCCTACTAGGCTCAAA
1 -TCACCGGCATT-TAGCCTGCTAGGCTCAAA
36415620 GGCCCGAATA
Statistics
Matches: 99, Mismatches: 16, Indels: 5
0.82 0.13 0.04
Matches are distributed among these distances:
42 33 0.33
43 2 0.02
44 10 0.10
45 54 0.55
ACGTcount: A:0.27, C:0.26, G:0.19, T:0.28
Consensus pattern (42 bp):
TCACCGGCATTTAGCCTGCTAGGCTCAAAAACCTGAATTCAT
Found at i:36415570 original size:45 final size:45
Alignment explanation
Indices: 36415501--36415629 Score: 165
Period size: 45 Copynumber: 2.9 Consensus size: 45
36415491 CTGAATTCAT
* * * *
36415501 TCACCGGCATT-TCGCCTGCTAGGCTCGAAA-GCCTGAATAGTATC
1 TCACTGGCATTATAGCCTACTAGGCTC-AAAGGCCCGAATAGTATC
* *
36415545 TCA-TCGGTATTATAGCCTTCTAGGCTCAAAGGCCCGAATAGTATC
1 TCACT-GGCATTATAGCCTACTAGGCTCAAAGGCCCGAATAGTATC
36415590 TCACTGGCATTATAGCCTACTAGGCTCAAAGGCCCGAATA
1 TCACTGGCATTATAGCCTACTAGGCTCAAAGGCCCGAATA
36415630 ATACTGTGCG
Statistics
Matches: 74, Mismatches: 7, Indels: 7
0.84 0.08 0.08
Matches are distributed among these distances:
44 11 0.15
45 62 0.84
46 1 0.01
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.26
Consensus pattern (45 bp):
TCACTGGCATTATAGCCTACTAGGCTCAAAGGCCCGAATAGTATC
Found at i:36416494 original size:47 final size:47
Alignment explanation
Indices: 36416438--36416580 Score: 259
Period size: 47 Copynumber: 3.0 Consensus size: 47
36416428 AAATTTTTCT
* *
36416438 TTAACTAAGTAACTTATCCAGAAATAATAAGGGCAAATTTAACAAGC
1 TTAACTAAGTAACTTATCCGGAAATATTAAGGGCAAATTTAACAAGC
36416485 TTAACTAAGTAACTTATCCGGAAATATTAAGGGCAAATTTAACAAGC
1 TTAACTAAGTAACTTATCCGGAAATATTAAGGGCAAATTTAACAAGC
*
36416532 TTAACTAAGTAACTTATCCGGAAATATTAAGAGCAAATTTAACAAGC
1 TTAACTAAGTAACTTATCCGGAAATATTAAGGGCAAATTTAACAAGC
36416579 TT
1 TT
36416581 TAAATTCAAC
Statistics
Matches: 93, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
47 93 1.00
ACGTcount: A:0.44, C:0.15, G:0.13, T:0.28
Consensus pattern (47 bp):
TTAACTAAGTAACTTATCCGGAAATATTAAGGGCAAATTTAACAAGC
Found at i:36425683 original size:41 final size:41
Alignment explanation
Indices: 36425545--36425697 Score: 154
Period size: 41 Copynumber: 3.8 Consensus size: 41
36425535 TTTAAATTCT
* *
36425545 AGCTTGGTTTCGAAGGGCCTTTGAGCTAGT-G-CTAATAACCG
1 AGCTTAGTTTCGAAGGGCCTTTGAGCCAGTGGCCTAAT--CCG
* * *
36425586 AACTTAGTTTCGAAGGG-CTTTAGAGCCAGTGTCATAA-CCG
1 AGCTTAGTTTCGAAGGGCCTTT-GAGCCAGTGGCCTAATCCG
* *
36425626 -GACTTAGTTCCGAAGGGCCTTCGAGCCAGTGGCCTAATCCG
1 AG-CTTAGTTTCGAAGGGCCTTTGAGCCAGTGGCCTAATCCG
* *
36425667 AGCTTAGTCTCGAAGGGCTTTTGAGCCAGTG
1 AGCTTAGTTTCGAAGGGCCTTTGAGCCAGTG
36425698 CTAAGAATCG
Statistics
Matches: 91, Mismatches: 14, Indels: 14
0.76 0.12 0.12
Matches are distributed among these distances:
40 34 0.37
41 53 0.58
42 1 0.01
43 3 0.03
ACGTcount: A:0.22, C:0.22, G:0.29, T:0.27
Consensus pattern (41 bp):
AGCTTAGTTTCGAAGGGCCTTTGAGCCAGTGGCCTAATCCG
Found at i:36434106 original size:41 final size:40
Alignment explanation
Indices: 36434045--36434193 Score: 162
Period size: 41 Copynumber: 3.7 Consensus size: 40
36434035 CGAGCTTGGT
36434045 TTTC-AAGGGCCTTTGAGCCAGTGCTAATAACCGAACTTAG
1 TTTCGAAGGG-CTTTGAGCCAGTGCTAATAACCGAACTTAG
* *
36434085 TTTCGAAGGGCTTTAGAGCCAGTG-TCATAACCGGACTTAG
1 TTTCGAAGGGCTTT-GAGCCAGTGCTAATAACCGAACTTAG
* * *
36434125 TTCCGAAGGGCCTTCGAGCCAGTGGTCTAAT--CCGAGCTTAG
1 TTTCGAAGGG-CTTTGAGCCAGT-G-CTAATAACCGAACTTAG
*
36434166 TCTCGAAGGGCTTTTGAGCCAGTGCTAA
1 TTTCGAAGGGC-TTTGAGCCAGTGCTAA
36434194 GAATTGGGCT
Statistics
Matches: 92, Mismatches: 10, Indels: 15
0.79 0.09 0.13
Matches are distributed among these distances:
39 4 0.04
40 41 0.45
41 44 0.48
43 3 0.03
ACGTcount: A:0.23, C:0.23, G:0.27, T:0.27
Consensus pattern (40 bp):
TTTCGAAGGGCTTTGAGCCAGTGCTAATAACCGAACTTAG
Found at i:36434126 original size:40 final size:39
Alignment explanation
Indices: 36434045--36434189 Score: 152
Period size: 40 Copynumber: 3.6 Consensus size: 39
36434035 CGAGCTTGGT
* *
36434045 TTTC-AAGGGCCTTTGAGCCAGTGCTAATAACCGAACTTAG
1 TTTCGAAGGG-CTTTGAGCCAGTG-TCATAACCGGACTTAG
36434085 TTTCGAAGGGCTTTAGAGCCAGTGTCATAACCGGACTTAG
1 TTTCGAAGGGCTTT-GAGCCAGTGTCATAACCGGACTTAG
* *
36434125 TTCCGAAGGGCCTTCGAGCCAGTGGTC-TAATCC-GAGCTTAG
1 TTTCGAAGGG-CTTTGAGCCAGT-GTCATAA-CCGGA-CTTAG
*
36434166 TCTCGAAGGGCTTTTGAGCCAGTG
1 TTTCGAAGGGC-TTTGAGCCAGTG
36434190 CTAAGAATTG
Statistics
Matches: 91, Mismatches: 7, Indels: 14
0.81 0.06 0.12
Matches are distributed among these distances:
40 46 0.51
41 45 0.49
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.27
Consensus pattern (39 bp):
TTTCGAAGGGCTTTGAGCCAGTGTCATAACCGGACTTAG
Found at i:36436657 original size:25 final size:24
Alignment explanation
Indices: 36436620--36436784 Score: 136
Period size: 25 Copynumber: 6.7 Consensus size: 24
36436610 ATGCTCTTAC
*
36436620 GAGCT-ATAAATGGTAAGTTCCTAT
1 GAGCTGAT-AATGGTAAGCTCCTAT
**
36436644 GAGCTGCATAATGGTAAGCTCCTCC
1 GAGCTG-ATAATGGTAAGCTCCTAT
* *
36436669 GAGCTGAATAATGGTAAGCTCATGT
1 GAGCTG-ATAATGGTAAGCTCCTAT
* *
36436694 GAGCTGAGTAATGGTAAGCTCATAC
1 GAGCTGA-TAATGGTAAGCTCCTAT
* * *
36436719 GAGCTGAGTAACGGTAAGCTCATAC
1 GAGCTGA-TAATGGTAAGCTCCTAT
* * *
36436744 GAGCTGAGTAACGGTAAGCTCATAC
1 GAGCTGA-TAATGGTAAGCTCCTAT
36436769 GAGCTGA-AATCGGTAA
1 GAGCTGATAAT-GGTAA
36436785 CGCTAATGAC
Statistics
Matches: 126, Mismatches: 11, Indels: 8
0.87 0.08 0.06
Matches are distributed among these distances:
23 2 0.02
24 11 0.09
25 111 0.88
26 2 0.02
ACGTcount: A:0.32, C:0.18, G:0.27, T:0.24
Consensus pattern (24 bp):
GAGCTGATAATGGTAAGCTCCTAT
Found at i:36436697 original size:50 final size:50
Alignment explanation
Indices: 36436612--36436776 Score: 201
Period size: 50 Copynumber: 3.3 Consensus size: 50
36436602 GAATCGATAT
* * *
36436612 GCTCTTACGAGCT--ATAAATGGTAAGTTCCTATGAGCTGCA-TAATGGTAA
1 GCTCATACGAGCTGAAT-AATGGTAAGCTCATATGAGCTG-AGTAATGGTAA
* * *
36436661 GCTCCTCCGAGCTGAATAATGGTAAGCTCATGTGAGCTGAGTAATGGTAA
1 GCTCATACGAGCTGAATAATGGTAAGCTCATATGAGCTGAGTAATGGTAA
* * * *
36436711 GCTCATACGAGCTGAGTAACGGTAAGCTCATACGAGCTGAGTAACGGTAA
1 GCTCATACGAGCTGAATAATGGTAAGCTCATATGAGCTGAGTAATGGTAA
36436761 GCTCATACGAGCTGAA
1 GCTCATACGAGCTGAA
36436777 ATCGGTAACG
Statistics
Matches: 100, Mismatches: 13, Indels: 5
0.85 0.11 0.04
Matches are distributed among these distances:
49 12 0.12
50 86 0.86
51 2 0.02
ACGTcount: A:0.30, C:0.19, G:0.26, T:0.25
Consensus pattern (50 bp):
GCTCATACGAGCTGAATAATGGTAAGCTCATATGAGCTGAGTAATGGTAA
Found at i:36436723 original size:75 final size:75
Alignment explanation
Indices: 36436587--36436775 Score: 190
Period size: 75 Copynumber: 2.5 Consensus size: 75
36436577 GTACACGTAT
* * * * * *
36436587 GCTCATACGAGCT--ATGAATCGATATGCTCTTACGAGCT-A-TAAATGGTAAGTTCCTATGAGC
1 GCTCATACGAGCTGAAT-AA-CGGTAAGCTCATACGAGCTGAGT-AATGGTAAGCTCATACGAGC
*
36436648 TGCA-TAATGGTAA
63 TG-AGTAACGGTAA
* * * **
36436661 GCTCCTCCGAGCTGAATAATGGTAAGCTCATGTGAGCTGAGTAATGGTAAGCTCATACGAGCTGA
1 GCTCATACGAGCTGAATAACGGTAAGCTCATACGAGCTGAGTAATGGTAAGCTCATACGAGCTGA
36436726 GTAACGGTAA
66 GTAACGGTAA
*
36436736 GCTCATACGAGCTGAGTAACGGTAAGCTCATACGAGCTGA
1 GCTCATACGAGCTGAATAACGGTAAGCTCATACGAGCTGA
36436776 AATCGGTAAC
Statistics
Matches: 92, Mismatches: 18, Indels: 9
0.77 0.15 0.08
Matches are distributed among these distances:
74 25 0.27
75 64 0.70
76 3 0.03
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.25
Consensus pattern (75 bp):
GCTCATACGAGCTGAATAACGGTAAGCTCATACGAGCTGAGTAATGGTAAGCTCATACGAGCTGA
GTAACGGTAA
Found at i:36437663 original size:20 final size:19
Alignment explanation
Indices: 36437634--36437673 Score: 62
Period size: 20 Copynumber: 2.1 Consensus size: 19
36437624 TAAAAGATGA
36437634 TATCTTTAATATATTTTAT
1 TATCTTTAATATATTTTAT
*
36437653 TATCATTTAATATGTTTTAT
1 TATC-TTTAATATATTTTAT
36437673 T
1 T
36437674 TTAATTAATA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 4 0.21
20 15 0.79
ACGTcount: A:0.30, C:0.05, G:0.03, T:0.62
Consensus pattern (19 bp):
TATCTTTAATATATTTTAT
Found at i:36442902 original size:17 final size:17
Alignment explanation
Indices: 36442880--36442938 Score: 52
Period size: 17 Copynumber: 3.6 Consensus size: 17
36442870 TACAAGTGGA
36442880 AAATATAATTATATAAT
1 AAATATAATTATATAAT
36442897 AAATAT-ATT-TATAA-
1 AAATATAATTATATAAT
* * *
36442911 AAATTTGATATAAATAAT
1 AAATATAAT-TATATAAT
*
36442929 AAATACAATT
1 AAATATAATT
36442939 TTAGTTGAAT
Statistics
Matches: 33, Mismatches: 5, Indels: 8
0.72 0.11 0.17
Matches are distributed among these distances:
14 5 0.15
15 7 0.21
16 4 0.12
17 11 0.33
18 6 0.18
ACGTcount: A:0.58, C:0.02, G:0.02, T:0.39
Consensus pattern (17 bp):
AAATATAATTATATAAT
Found at i:36443905 original size:15 final size:14
Alignment explanation
Indices: 36443878--36443904 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
36443868 CTCTAAAAAT
36443878 AAAAAATTATTTTA
1 AAAAAATTATTTTA
36443892 AAAAAATTATTTT
1 AAAAAATTATTTT
36443905 TTGTTTTTAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (14 bp):
AAAAAATTATTTTA
Found at i:36450441 original size:23 final size:24
Alignment explanation
Indices: 36450387--36450441 Score: 60
Period size: 23 Copynumber: 2.3 Consensus size: 24
36450377 AACTAATTTA
* *
36450387 AAAGTAAATAGAAATAAGTAATGC
1 AAAGTAAATACAAATAAATAATGC
*
36450411 AAATTAAAT-CAAATAAATAAT-C
1 AAAGTAAATACAAATAAATAATGC
36450433 AATAGTAAA
1 AA-AGTAAA
36450442 ACCTTAAGAT
Statistics
Matches: 26, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
22 3 0.12
23 15 0.58
24 8 0.31
ACGTcount: A:0.62, C:0.05, G:0.09, T:0.24
Consensus pattern (24 bp):
AAAGTAAATACAAATAAATAATGC
Found at i:36450705 original size:14 final size:14
Alignment explanation
Indices: 36450686--36450737 Score: 59
Period size: 14 Copynumber: 3.6 Consensus size: 14
36450676 AATTGATAGC
36450686 TAATTAAAGTACAA
1 TAATTAAAGTACAA
* *
36450700 TAATTAAATTGATAA
1 TAATTAAAGT-ACAA
*
36450715 CTAATTAAAGTACGA
1 -TAATTAAAGTACAA
36450730 TAATTAAA
1 TAATTAAA
36450738 TTGTAAAAAT
Statistics
Matches: 31, Mismatches: 5, Indels: 4
0.77 0.12 0.10
Matches are distributed among these distances:
14 17 0.55
15 5 0.16
16 9 0.29
ACGTcount: A:0.54, C:0.06, G:0.08, T:0.33
Consensus pattern (14 bp):
TAATTAAAGTACAA
Found at i:36450708 original size:30 final size:30
Alignment explanation
Indices: 36450674--36450740 Score: 116
Period size: 30 Copynumber: 2.2 Consensus size: 30
36450664 ATATTAAATA
*
36450674 TAAATTGATAGCTAATTAAAGTACAATAAT
1 TAAATTGATAACTAATTAAAGTACAATAAT
*
36450704 TAAATTGATAACTAATTAAAGTACGATAAT
1 TAAATTGATAACTAATTAAAGTACAATAAT
36450734 TAAATTG
1 TAAATTG
36450741 TAAAAATTTA
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
30 35 1.00
ACGTcount: A:0.49, C:0.06, G:0.10, T:0.34
Consensus pattern (30 bp):
TAAATTGATAACTAATTAAAGTACAATAAT
Found at i:36450721 original size:16 final size:16
Alignment explanation
Indices: 36450674--36450723 Score: 59
Period size: 16 Copynumber: 3.2 Consensus size: 16
36450664 ATATTAAATA
*
36450674 TAAATTGATAGCTAAT
1 TAAATTGATAACTAAT
* *
36450690 TAAAGT-ACAA-TAAT
1 TAAATTGATAACTAAT
36450704 TAAATTGATAACTAAT
1 TAAATTGATAACTAAT
36450720 TAAA
1 TAAA
36450724 GTACGATAAT
Statistics
Matches: 27, Mismatches: 5, Indels: 4
0.75 0.14 0.11
Matches are distributed among these distances:
14 9 0.33
15 5 0.19
16 13 0.48
ACGTcount: A:0.52, C:0.06, G:0.08, T:0.34
Consensus pattern (16 bp):
TAAATTGATAACTAAT
Found at i:36450967 original size:34 final size:34
Alignment explanation
Indices: 36450924--36450996 Score: 146
Period size: 34 Copynumber: 2.1 Consensus size: 34
36450914 ATATGGAAAG
36450924 AAAAAGAATTTATCTTCATCTTCTTCTCACCACC
1 AAAAAGAATTTATCTTCATCTTCTTCTCACCACC
36450958 AAAAAGAATTTATCTTCATCTTCTTCTCACCACC
1 AAAAAGAATTTATCTTCATCTTCTTCTCACCACC
36450992 AAAAA
1 AAAAA
36450997 TACCATAGCC
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 39 1.00
ACGTcount: A:0.37, C:0.27, G:0.03, T:0.33
Consensus pattern (34 bp):
AAAAAGAATTTATCTTCATCTTCTTCTCACCACC
Found at i:36451930 original size:42 final size:42
Alignment explanation
Indices: 36451884--36452101 Score: 188
Period size: 42 Copynumber: 5.2 Consensus size: 42
36451874 CAGTTTATTT
* *
36451884 GATGATGCACTTATGTGTCAGTATATTTTCTTCAGTATATCC
1 GATGATGCACTTATGTGCCAGTATATTTTCTTCGGTATATCC
* * * * *
36451926 GATGATACTCTTACGTGTCAATATATTTTCTTCGGTATATCC
1 GATGATGCACTTATGTGCCAGTATATTTTCTTCGGTATATCC
* * * *
36451968 AATGATGCACTTATGTGCCAGTATATTTTCTTTGGTACATCT
1 GATGATGCACTTATGTGCCAGTATATTTTCTTCGGTATATCC
* ** * * * * *
36452010 GATAATGCACTTACATGCCAGCATAATTGCTTCGGTTTATCT
1 GATGATGCACTTATGTGCCAGTATATTTTCTTCGGTATATCC
* * * *
36452052 GATGATGCAC-TATGTTTTCCAATATATTTCCTTCGGTTTA-CTC
1 GATGATGCACTTATG--TGCCAGTATATTTTCTTCGGTATATC-C
36452095 GATGATG
1 GATGATG
36452102 TACTGTGGTT
Statistics
Matches: 140, Mismatches: 33, Indels: 5
0.79 0.19 0.03
Matches are distributed among these distances:
41 2 0.01
42 112 0.80
43 26 0.19
ACGTcount: A:0.24, C:0.18, G:0.17, T:0.41
Consensus pattern (42 bp):
GATGATGCACTTATGTGCCAGTATATTTTCTTCGGTATATCC
Found at i:36453889 original size:21 final size:21
Alignment explanation
Indices: 36453854--36453893 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 21
36453844 TATATAGTTG
36453854 AATAAAAACTCTATTATTTAAA
1 AATAAAAACTCTATT-TTTAAA
*
36453876 AATAAAAA-TTTATTTTTA
1 AATAAAAACTCTATTTTTA
36453894 TATAATGTCA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 4 0.24
21 5 0.29
22 8 0.47
ACGTcount: A:0.53, C:0.05, G:0.00, T:0.42
Consensus pattern (21 bp):
AATAAAAACTCTATTTTTAAA
Found at i:36458204 original size:28 final size:28
Alignment explanation
Indices: 36458144--36458205 Score: 115
Period size: 28 Copynumber: 2.2 Consensus size: 28
36458134 TATTTAATCA
*
36458144 AAGCAATCATCCTAGCTTAAATAAAATT
1 AAGCTATCATCCTAGCTTAAATAAAATT
36458172 AAGCTATCATCCTAGCTTAAATAAAATT
1 AAGCTATCATCCTAGCTTAAATAAAATT
36458200 AAGCTA
1 AAGCTA
36458206 ACATTGTTGT
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 33 1.00
ACGTcount: A:0.45, C:0.18, G:0.08, T:0.29
Consensus pattern (28 bp):
AAGCTATCATCCTAGCTTAAATAAAATT
Found at i:36466719 original size:10 final size:10
Alignment explanation
Indices: 36466702--36466802 Score: 66
Period size: 11 Copynumber: 9.9 Consensus size: 10
36466692 CCTCCTATTT
36466702 TTTTA-TTTA
1 TTTTATTTTA
36466711 TTCTTATTTTTA
1 TT-TTA-TTTTA
36466723 TTTTATTTTA
1 TTTTATTTTA
36466733 TTTTA-TTTA
1 TTTTATTTTA
* *
36466742 TTTTCTTTTTC
1 TTTT-ATTTTA
* *
36466753 TTTTGTTTTTG
1 TTTT-ATTTTA
*
36466764 TTTTTTTTTA
1 TTTTATTTTA
*
36466774 TTTTTATTTCAA
1 -TTTTATTT-TA
36466786 TTTTA--TTA
1 TTTTATTTTA
36466794 TTTTATTTT
1 TTTTATTTT
36466803 GAAAAAGATA
Statistics
Matches: 75, Mismatches: 8, Indels: 17
0.75 0.08 0.17
Matches are distributed among these distances:
8 6 0.08
9 11 0.15
10 20 0.27
11 31 0.41
12 7 0.09
ACGTcount: A:0.15, C:0.04, G:0.02, T:0.79
Consensus pattern (10 bp):
TTTTATTTTA
Found at i:36466723 original size:6 final size:6
Alignment explanation
Indices: 36466697--36466782 Score: 51
Period size: 6 Copynumber: 14.8 Consensus size: 6
36466687 TGAATCCTCC
*
36466697 TATTTT T-TTATT TATTCT TATTTT TA-TTT TA-TTT TA-TTT TATTTAT
1 TATTTT TATT-TT TATTTT TATTTT TATTTT TATTTT TATTTT TATTT-T
* * *
36466743 T-TTCTT TTTCTTT TGTTTT T-GTTT T-TTTT TATTTT TATTT
1 TATT-TT TAT-TTT TATTTT TATTTT TATTTT TATTTT TATTT
36466783 CAATTTTATT
Statistics
Matches: 67, Mismatches: 5, Indels: 16
0.76 0.06 0.18
Matches are distributed among these distances:
5 25 0.37
6 31 0.46
7 10 0.15
8 1 0.01
ACGTcount: A:0.13, C:0.03, G:0.02, T:0.81
Consensus pattern (6 bp):
TATTTT
Found at i:36466728 original size:5 final size:5
Alignment explanation
Indices: 36466702--36466802 Score: 66
Period size: 5 Copynumber: 19.8 Consensus size: 5
36466692 CCTCCTATTT
*
36466702 TTTTA -TTTA TTCTTA TTTTTA TTTTA TTTTA TTTTA -TTTA TTTTCT
1 TTTTA TTTTA TT-TTA -TTTTA TTTTA TTTTA TTTTA TTTTA TTTT-A
* * * * *
36466748 TTTTC TTTTGT TTTTG TTTTT TTTTA TTTTTA TTTCAA TTTTA --TTA
1 TTTTA TTTT-A TTTTA TTTTA TTTTA -TTTTA TTT-TA TTTTA TTTTA
36466794 TTTTA TTTT
1 TTTTA TTTT
36466803 GAAAAAGATA
Statistics
Matches: 78, Mismatches: 8, Indels: 20
0.74 0.08 0.19
Matches are distributed among these distances:
3 3 0.04
4 8 0.10
5 42 0.54
6 23 0.29
7 2 0.03
ACGTcount: A:0.15, C:0.04, G:0.02, T:0.79
Consensus pattern (5 bp):
TTTTA
Done.