Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A06
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 115140250
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2234201 characters in sequence are not A, C, G, or T
File 114 of 345
Found at i:37768747 original size:30 final size:30
Alignment explanation
Indices: 37768689--37768748 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
37768679 TATTTTATTA
* *
37768689 TTAATTTTGTTATTATTTTAGATGCATTTG
1 TTAATTTTATTATTATTTTAGAAGCATTTG
37768719 TTAATTTTATTATTATTTTA-AAGACATTTG
1 TTAATTTTATTATTATTTTAGAAG-CATTTG
37768749 CTCGTTAAGT
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
29 2 0.07
30 25 0.93
ACGTcount: A:0.28, C:0.03, G:0.10, T:0.58
Consensus pattern (30 bp):
TTAATTTTATTATTATTTTAGAAGCATTTG
Found at i:37770922 original size:16 final size:16
Alignment explanation
Indices: 37770901--37770934 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
37770891 TGGCTTGATA
* *
37770901 AAACTCATACCGACTC
1 AAACTCAAACCAACTC
37770917 AAACTCAAACCAACTC
1 AAACTCAAACCAACTC
37770933 AA
1 AA
37770935 CTTGATTTGG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.47, C:0.35, G:0.03, T:0.15
Consensus pattern (16 bp):
AAACTCAAACCAACTC
Found at i:37783103 original size:18 final size:18
Alignment explanation
Indices: 37783076--37783168 Score: 132
Period size: 18 Copynumber: 5.2 Consensus size: 18
37783066 TACGACCGTT
37783076 TACGGTACTATTCACGTA
1 TACGGTACTATTCACGTA
* *
37783094 TACGGCACTATTCACATA
1 TACGGTACTATTCACGTA
* *
37783112 TACAGTACTATTTACGTA
1 TACGGTACTATTCACGTA
*
37783130 TACGGCACTATTCACGTA
1 TACGGTACTATTCACGTA
*
37783148 TACGGTACTGTTCACGTA
1 TACGGTACTATTCACGTA
37783166 TAC
1 TAC
37783169 AGTAGTTGGG
Statistics
Matches: 64, Mismatches: 11, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
18 64 1.00
ACGTcount: A:0.29, C:0.24, G:0.15, T:0.32
Consensus pattern (18 bp):
TACGGTACTATTCACGTA
Found at i:37790273 original size:17 final size:18
Alignment explanation
Indices: 37790245--37790278 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
37790235 TCCCTTTCAT
37790245 TGAAACGATCGAATGCCA
1 TGAAACGATCGAATGCCA
37790263 TGAAA-GATCGAATGCC
1 TGAAACGATCGAATGCC
37790279 TTCATAGTTC
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 11 0.69
18 5 0.31
ACGTcount: A:0.38, C:0.21, G:0.24, T:0.18
Consensus pattern (18 bp):
TGAAACGATCGAATGCCA
Found at i:37790762 original size:31 final size:31
Alignment explanation
Indices: 37790716--37790778 Score: 99
Period size: 31 Copynumber: 2.0 Consensus size: 31
37790706 AACAATGTAG
*
37790716 TGACTTAGATAAAAACTTTCAAATAATTTAA
1 TGACTTAAATAAAAACTTTCAAATAATTTAA
* *
37790747 TGACTTAAATTAAAACTTTCGAATAATTTAA
1 TGACTTAAATAAAAACTTTCAAATAATTTAA
37790778 T
1 T
37790779 AATTATTTTG
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.46, C:0.10, G:0.06, T:0.38
Consensus pattern (31 bp):
TGACTTAAATAAAAACTTTCAAATAATTTAA
Found at i:37793391 original size:22 final size:22
Alignment explanation
Indices: 37793356--37793397 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
37793346 TATACAAGTA
37793356 ATATTACTTAAATAATTATGAG
1 ATATTACTTAAATAATTATGAG
* *
37793378 ATATTAGTTGAATAATTATG
1 ATATTACTTAAATAATTATG
37793398 TCTCTTTTAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.43, C:0.02, G:0.12, T:0.43
Consensus pattern (22 bp):
ATATTACTTAAATAATTATGAG
Found at i:37794666 original size:38 final size:38
Alignment explanation
Indices: 37794624--37794749 Score: 112
Period size: 38 Copynumber: 3.3 Consensus size: 38
37794614 CTTATTGAAG
* * * *
37794624 GGTTGTGAAAGGCCTAGTCAATGCCGACCTTCAAAAAA
1 GGTTGGGAAAGACCTAGTCAAGGCCAACCTTCAAAAAA
* * **
37794662 GGTTGGGATAGACTTAGTCAAGGCCAACCTTTGAAAAA
1 GGTTGGGAAAGACCTAGTCAAGGCCAACCTTCAAAAAA
* * * *
37794700 GGTTGGGATAGACCAATTTAAGG-CAACCCTT-AAAAAA
1 GGTTGGGAAAGACCTAGTCAAGGCCAA-CCTTCAAAAAA
*
37794737 GGTTGGGATAGAC
1 GGTTGGGAAAGAC
37794750 TCATTTAAGA
Statistics
Matches: 74, Mismatches: 13, Indels: 3
0.82 0.14 0.03
Matches are distributed among these distances:
37 21 0.28
38 53 0.72
ACGTcount: A:0.35, C:0.17, G:0.26, T:0.22
Consensus pattern (38 bp):
GGTTGGGAAAGACCTAGTCAAGGCCAACCTTCAAAAAA
Found at i:37794736 original size:37 final size:36
Alignment explanation
Indices: 37794651--37795040 Score: 224
Period size: 37 Copynumber: 10.6 Consensus size: 36
37794641 TCAATGCCGA
* * * *
37794651 CCTTCAAAAAAGGTTGGGATAGACTTAGTCAAGGCCAAC
1 CCTT-AAAAAAGGTTGGGATAGAC-CATTTAA-GACAAC
* * *
37794690 CTTTGAAAAAGGTTGGGATAGACCAATTTAAGGCAAC
1 CCTTAAAAAAGGTTGGGATAGACC-ATTTAAGACAAC
*
37794727 CCTTAAAAAAGGTTGGGATAGACTCATTTAAGATAA-
1 CCTTAAAAAAGGTTGGGATAGAC-CATTTAAGACAAC
* * *
37794763 CCTT-AAAAAGGTTGAGATAGACCTTGTCTAAGATAAC
1 CCTTAAAAAAGGTTGGGATAGACCAT-T-TAAGACAAC
** **
37794800 CCTTAAAAAAGGTTGGGATAGACTTGTTTAAGGTAA-
1 CCTTAAAAAAGGTTGGGATAGAC-CATTTAAGACAAC
* * * *
37794836 CCTT-AAAAAGGTTTGAGATAGACTTTATCTAAGGCAAC
1 CCTTAAAAAAGG-TTGGGATAGAC--CATTTAAGACAAC
* * * * * *
37794874 CCTTAAAAAAAGTTAGGATAAACTCCTCTAAAACAAC
1 CCTTAAAAAAGGTTGGGATAGAC-CATTTAAGACAAC
* *
37794911 CC-TAAAAAA-GTTGGTATAGACCTTGTCTAAGACAAC
1 CCTTAAAAAAGGTTGGGATAGACCAT-T-TAAGACAAC
* * * *
37794947 CTTTAAAAAA-GTTGAGATAAAGCCATTTAATACAA-
1 CCTTAAAAAAGGTTGGGATAGA-CCATTTAAGACAAC
* * *
37794982 CCTT-AAAAAGGTTGGGATATACTTTATCTAAGACAA-
1 CCTTAAAAAAGGTTGGGATAGAC--CATTTAAGACAAC
* * *
37795018 CTTTTAAAAAGGTTGGAATAGAC
1 CCTTAAAAAAGGTTGGGATAGAC
37795041 TCGTCTAAAG
Statistics
Matches: 283, Mismatches: 49, Indels: 40
0.76 0.13 0.11
Matches are distributed among these distances:
34 10 0.04
35 46 0.16
36 61 0.22
37 100 0.35
38 56 0.20
39 10 0.04
ACGTcount: A:0.40, C:0.15, G:0.18, T:0.27
Consensus pattern (36 bp):
CCTTAAAAAAGGTTGGGATAGACCATTTAAGACAAC
Found at i:37794773 original size:110 final size:109
Alignment explanation
Indices: 37794657--37795040 Score: 286
Period size: 110 Copynumber: 3.5 Consensus size: 109
37794647 CCGACCTTCA
* * * *
37794657 AAAAAGGTTGGGATAGA-CTTAGTC-AAGGCCAACCTTTGAAAAAGGTTGGGATAGACCAATTTA
1 AAAAAGGTTGAGATAGACCTT-GTCTAA-GACAACCCTTAAAAAAGGTTGGGATAGACCAATTTA
*
37794720 AGGCAACCCTTAAAAAAGG-TTGGGATAGACTCATTTAAGATAACCTT
64 AGGCAA-CCTT-AAAAAGGTTTGAGATAGACTCATTTAAGATAACCTT
* ***
37794767 AAAAAGGTTGAGATAGACCTTGTCTAAGATAACCCTTAAAAAAGGTTGGGATAGACTTGTTTAAG
1 AAAAAGGTTGAGATAGACCTTGTCTAAGACAACCCTTAAAAAAGGTTGGGATAGACCAATTTAAG
* * * **
37794832 GTAACCTTAAAAAGGTTTGAGATAGACTTTATCTAAGGCAACCCTT
66 GCAACCTTAAAAAGGTTTGAGATAGAC-TCATTTAAGATAA-CCTT
* * ** * * *
37794878 AAAAAAAGTT-AGGATA-AACTCCTCTAAAACAACCC-TAAAAAA-GTTGGTATAGACC-TTGTC
1 -AAAAAGGTTGA-GATAGACCTTGTCTAAGACAACCCTTAAAAAAGGTTGGGATAGACCAAT-T-
* * * * *
37794938 TAAGACAACCTTTAAAAAAG-TTGAGATAAAGC-CATTTAATACAACCTT
62 TAAGGCAACC-TTAAAAAGGTTTGAGATAGA-CTCATTTAAGATAACCTT
* * * * * * *
37794986 AAAAAGGTTGGGATATACTTTATCTAAGACAA-CTTTTAAAAAGGTTGGAATAGAC
1 AAAAAGGTTGAGATAGACCTTGTCTAAGACAACCCTTAAAAAAGGTTGGGATAGAC
37795041 TCGTCTAAAG
Statistics
Matches: 218, Mismatches: 41, Indels: 31
0.75 0.14 0.11
Matches are distributed among these distances:
107 13 0.06
108 29 0.13
109 45 0.21
110 86 0.39
111 33 0.15
112 12 0.06
ACGTcount: A:0.40, C:0.14, G:0.19, T:0.27
Consensus pattern (109 bp):
AAAAAGGTTGAGATAGACCTTGTCTAAGACAACCCTTAAAAAAGGTTGGGATAGACCAATTTAAG
GCAACCTTAAAAAGGTTTGAGATAGACTCATTTAAGATAACCTT
Found at i:37794819 original size:73 final size:73
Alignment explanation
Indices: 37794651--37795151 Score: 379
Period size: 73 Copynumber: 6.8 Consensus size: 73
37794641 TCAATGCCGA
* * * * * *
37794651 CCTTCAAAAAAGGTTGGGATAGACTTAGTCAAGGCCAACCTTTGAAAAAGGTTGGGATAGACC-A
1 CCTT-AAAAAAGGTTGGGATAGACTCATTTAA-GACAACC-TT-AAAAAGGTTGAGATAGACCTT
* *
37794715 ATTTAAGGCAAC
62 ATCTAAGACAAC
* *
37794727 CCTTAAAAAAGGTTGGGATAGACTCATTTAAGATAACCTTAAAAAGGTTGAGATAGACCTTGTCT
1 CCTTAAAAAAGGTTGGGATAGACTCATTTAAGACAACCTTAAAAAGGTTGAGATAGACCTTATCT
*
37794792 AAGATAAC
66 AAGACAAC
** ** *
37794800 CCTTAAAAAAGGTTGGGATAGACTTGTTTAAGGTAACCTTAAAAAGGTTTGAGATAGACTTTATC
1 CCTTAAAAAAGGTTGGGATAGACTCATTTAAGACAACCTTAAAAAGG-TTGAGATAGACCTTATC
*
37794865 TAAGGCAAC
65 TAAGACAAC
* * * * * * * * *
37794874 CCTTAAAAAAAGTTAGGATAAACTCCTCTAAAACAACCCTAAAAAAGTTG-GTATAGACCTTGTC
1 CCTTAAAAAAGGTTGGGATAGACTCATTTAAGACAACCTTAAAAAGGTTGAG-ATAGACCTTATC
37794938 TAAGACAAC
65 TAAGACAAC
* * * * * * *
37794947 CTTTAAAAAA-GTTGAGATAAAGC-CATTTAATACAACCTTAAAAAGGTTGGGATATACTTTATC
1 CCTTAAAAAAGGTTGGGATAGA-CTCATTTAAGACAACCTTAAAAAGGTTGAGATAGACCTTATC
37795010 TAAGACAA-
65 TAAGACAAC
* * * * * * * * * *
37795018 CTTTTAAAAAGGTTGGAATAGACTCGTCTAA-AGTAACTTTAAAAAAGTT-AGGATAAACATTAT
1 CCTTAAAAAAGGTTGGGATAGACTCATTTAAGA-CAACCTTAAAAAGGTTGA-GATAGACCTTAT
* *
37795081 CTAAAATAAC
64 CTAAGACAAC
** * * * * * *
37795091 TTTTAAAAAATGTTGAGATAGACCCGTTTAA-AGCAACCTTAAAAAGGTTGGGATAAACCTT
1 CCTTAAAAAAGGTTGGGATAGACTCATTTAAGA-CAACCTTAAAAAGGTTGAGATAGACCTT
37795152 TTGATTTATC
Statistics
Matches: 345, Mismatches: 69, Indels: 25
0.79 0.16 0.06
Matches are distributed among these distances:
71 11 0.03
72 109 0.32
73 134 0.39
74 63 0.18
75 24 0.07
76 4 0.01
ACGTcount: A:0.41, C:0.14, G:0.18, T:0.27
Consensus pattern (73 bp):
CCTTAAAAAAGGTTGGGATAGACTCATTTAAGACAACCTTAAAAAGGTTGAGATAGACCTTATCT
AAGACAAC
Found at i:37795107 original size:145 final size:145
Alignment explanation
Indices: 37794686--37795145 Score: 374
Period size: 147 Copynumber: 3.2 Consensus size: 145
37794676 TAGTCAAGGC
** * * * * *
37794686 CAACCTTTGAAAAAGGTTGGGATAGAC-CAATTTAAGGCAACCCTTAAAAAAGGTTGGGATAGAC
1 CAACC-TT-AAAAAGGTTGGGATAGACTTTATCTAAGACAACCCTTAAAAAAAGTTAGGATAAAC
* * * * * * * * * * * *
37794750 TCATTTAAGATAACCTTAAAAAGGTTGAG-ATAGACCTTGTCTAAGATAACCCTTAAAAAAGGTT
64 TCCTCTAAAACAACCCTAAAAAAGTTG-GTATAAACATTATCTAAAACAACCTTTAAAAAA-GTT
* * *** *
37794814 GGGATAGACTTGTTTAAGG
127 GAGATAAACCCATTTAAAG
* * *
37794833 TAACCTTAAAAAGGTTTGAGATAGACTTTATCTAAGGCAACCCTTAAAAAAAGTTAGGATAAACT
1 CAACCTTAAAAAGG-TTGGGATAGACTTTATCTAAGACAACCCTTAAAAAAAGTTAGGATAAACT
* * * *
37794898 CCTCTAAAACAACCCTAAAAAAGTTGGTATAGACCTTGTCTAAGACAACCTTTAAAAAAGTTGAG
65 CCTCTAAAACAACCCTAAAAAAGTTGGTATAAACATTATCTAAAACAACCTTTAAAAAAGTTGAG
*
37794963 ATAAAGCCATTTAATA-
130 ATAAACCCATTTAA-AG
* * * * *
37794979 CAACCTTAAAAAGGTTGGGATATACTTTATCTAAGACAA-CTTTTAAAAAGGTT-GGAATAGACT
1 CAACCTTAAAAAGGTTGGGATAGACTTTATCTAAGACAACCCTTAAAAAAAGTTAGG-ATAAACT
* ** ** * *
37795042 CGTCTAAAGTAACTTTAAAAAAGTTAGG-ATAAACATTATCTAAAATAACTTTTAAAAAATGTTG
65 CCTCTAAAACAACCCTAAAAAAGTT-GGTATAAACATTATCTAAAACAACCTTTAAAAAA-GTTG
* *
37795106 AGATAGACCCGTTTAAAG
128 AGATAAACCCATTTAAAG
37795124 CAACCTTAAAAAGGTTGGGATA
1 CAACCTTAAAAAGGTTGGGATA
37795146 AACCTTTTGA
Statistics
Matches: 260, Mismatches: 45, Indels: 18
0.80 0.14 0.06
Matches are distributed among these distances:
143 2 0.01
144 63 0.24
145 70 0.27
146 40 0.15
147 85 0.33
ACGTcount: A:0.41, C:0.14, G:0.17, T:0.28
Consensus pattern (145 bp):
CAACCTTAAAAAGGTTGGGATAGACTTTATCTAAGACAACCCTTAAAAAAAGTTAGGATAAACTC
CTCTAAAACAACCCTAAAAAAGTTGGTATAAACATTATCTAAAACAACCTTTAAAAAAGTTGAGA
TAAACCCATTTAAAG
Found at i:37795327 original size:6 final size:7
Alignment explanation
Indices: 37795303--37795334 Score: 50
Period size: 6 Copynumber: 4.9 Consensus size: 7
37795293 TACAACTAAA
37795303 AAAATAT
1 AAAATAT
37795310 AAAATAT
1 AAAATAT
37795317 AAAAT-T
1 AAAATAT
37795323 AAAAT-T
1 AAAATAT
37795329 AAAATA
1 AAAATA
37795335 ATGATTGAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
6 12 0.50
7 12 0.50
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (7 bp):
AAAATAT
Found at i:37800471 original size:15 final size:15
Alignment explanation
Indices: 37800436--37800477 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
37800426 TTAAGAATTT
*
37800436 TATTAAATTAT-ATA
1 TATTTAATTATAATA
37800450 T-TTTAATTATAATA
1 TATTTAATTATAATA
*
37800464 TATTTAATAATAAT
1 TATTTAATTATAAT
37800478 TATGTTAAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 8 0.33
14 5 0.21
15 11 0.46
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (15 bp):
TATTTAATTATAATA
Found at i:37800720 original size:16 final size:16
Alignment explanation
Indices: 37800701--37800752 Score: 77
Period size: 16 Copynumber: 3.2 Consensus size: 16
37800691 GATTTGATAT
* *
37800701 TACACCTCTATTCCAT
1 TACACCTCTAATCCAA
37800717 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
*
37800733 TAAACCTCTAATCCAA
1 TACACCTCTAATCCAA
37800749 TACA
1 TACA
37800753 GCGAACCAAA
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 32 1.00
ACGTcount: A:0.37, C:0.35, G:0.00, T:0.29
Consensus pattern (16 bp):
TACACCTCTAATCCAA
Found at i:37802433 original size:23 final size:23
Alignment explanation
Indices: 37802372--37802433 Score: 72
Period size: 24 Copynumber: 2.7 Consensus size: 23
37802362 ATATTTATCT
*
37802372 TATTTATGATT-AAAATTTTTAAA
1 TATTTAT-ATTAAAAATTTTGAAA
* *
37802395 TATATATAATATAAAATTTTGAAA
1 TATTTATATTA-AAAATTTTGAAA
37802419 TATTTATATTAAAAA
1 TATTTATATTAAAAA
37802434 AACTCTAAAA
Statistics
Matches: 32, Mismatches: 5, Indels: 4
0.78 0.12 0.10
Matches are distributed among these distances:
22 2 0.06
23 10 0.31
24 20 0.62
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (23 bp):
TATTTATATTAAAAATTTTGAAA
Found at i:37802543 original size:21 final size:22
Alignment explanation
Indices: 37802518--37802567 Score: 59
Period size: 21 Copynumber: 2.4 Consensus size: 22
37802508 ATCTTAAATT
*
37802518 ATAAACTA-TAATCCCTAAACC
1 ATAAACTACTAAACCCTAAACC
* *
37802539 TTAAAC-ACTAAACCTTAAACC
1 ATAAACTACTAAACCCTAAACC
37802560 ATAAACTA
1 ATAAACTA
37802568 AATTAATTTT
Statistics
Matches: 23, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
20 1 0.04
21 21 0.91
22 1 0.04
ACGTcount: A:0.50, C:0.26, G:0.00, T:0.24
Consensus pattern (22 bp):
ATAAACTACTAAACCCTAAACC
Found at i:37802565 original size:14 final size:14
Alignment explanation
Indices: 37802532--37802558 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
37802522 ACTATAATCC
37802532 CTAAACCTTAAACA
1 CTAAACCTTAAACA
37802546 CTAAACCTTAAAC
1 CTAAACCTTAAAC
37802559 CATAAACTAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.48, C:0.30, G:0.00, T:0.22
Consensus pattern (14 bp):
CTAAACCTTAAACA
Found at i:37803082 original size:126 final size:129
Alignment explanation
Indices: 37802855--37803380 Score: 506
Period size: 140 Copynumber: 3.9 Consensus size: 129
37802845 TATAACACAA
* * * * * * *
37802855 GTCGGCATAGTGTT-CACAAAGTCGAATCTTATTTAAGTGTTGCCTTAGGCATGTATATACCAAT
1 GTCGGCATAGTGTTAAACAAAGCCGACTCTTATTTAAGCGTTGCCTTAGGCATGCATATCCCAAC
* * **
37802919 TCTTATCCAAAGAGTTGGCCAAAA-CGTATGCCGACAAGTCTATCCCAACACTT-AG-C-AAAGT
66 TCTTATACAAAGAGTTGG-CAAAAGTGTATATCGACAAGTCTATCCCAACACTTAAGCCAAAAGT
* * * *
37802980 GTCGGCATAGTGTTAAACAAAGCCGACTCTTAATTAAGCGTTGTCTTAGGCATGCATATCCTACC
1 GTCGGCATAGTGTTAAACAAAGCCGACTCTTATTTAAGCGTTGCCTTAGGCATGCATATCCCAAC
* * *
37803045 TCTTATACAAAGGGTTGGCAAAAGTGTGTATCAACAAGTCTATCCCAACACTTAGGAAAGTGTCG
66 TCTTATACAAAGAGTTGGCAAAAGTGTATATCGACAAGTCTATCCCAACACTT----AA------
37803110 GCCTAAAAGT
121 GCC-AAAAGT
** * *
37803120 GTCGGCATAGTGTTGGACAAAGCCGACTTTTATTTAAGCGTTGCCTTAGACATGCATATCCCAAC
1 GTCGGCATAGTGTTAAACAAAGCCGACTCTTATTTAAGCGTTGCCTTAGGCATGCATATCCCAAC
* * *
37803185 TCTTATATAAAGAGTTGGCCAAAGTGTATATCGACAAATCTATCCCAACACTTAGGAAAGTGTTA
66 TCTTATACAAAGAGTTGGCAAAAGTGTATATCGACAAGTCTATCCCAACACTT-----A-----A
37803250 GCCCAAAAGT
121 G-CCAAAAGT
* *
37803260 GTCGGCATAGTGTTAGAA-AAAGTCGACTCTTATTTAAGCATTGCCTTAGGCATGCATATCCCAA
1 GTCGGCATAGTGTTA-AACAAAGCCGACTCTTATTTAAGCGTTGCCTTAGGCATGCATATCCCAA
* * * * *
37803324 CTCTTATACAAAGTGTTGGCCAAAGTGTATGTCGACAAGTTTATCCTAACACTTAAG
65 CTCTTATACAAAGAGTTGGCAAAAGTGTATATCGACAAGTCTATCCCAACACTTAAG
37803381 AAAGTGTCGT
Statistics
Matches: 331, Mismatches: 46, Indels: 43
0.79 0.11 0.10
Matches are distributed among these distances:
125 19 0.06
126 79 0.24
130 2 0.01
131 1 0.00
135 1 0.00
137 1 0.00
138 1 0.00
140 220 0.66
141 6 0.02
146 1 0.00
ACGTcount: A:0.31, C:0.21, G:0.19, T:0.29
Consensus pattern (129 bp):
GTCGGCATAGTGTTAAACAAAGCCGACTCTTATTTAAGCGTTGCCTTAGGCATGCATATCCCAAC
TCTTATACAAAGAGTTGGCAAAAGTGTATATCGACAAGTCTATCCCAACACTTAAGCCAAAAGT
Found at i:37803227 original size:140 final size:140
Alignment explanation
Indices: 37802975--37803389 Score: 605
Period size: 140 Copynumber: 3.0 Consensus size: 140
37802965 AACACTTAGC
* * *
37802975 AAAGTGTCGGCATAGTGTTAAACAAAGCCGACTCTTAATTAAGCGTTGTCTTAGGCATGCATATC
1 AAAGTGTCGGCATAGTGTTAGACAAAGCCGACTCTTATTTAAGCGTTGCCTTAGGCATGCATATC
* * * * * *
37803040 CTACCTCTTATACAAAGGGTTGGCAAAAGTGTGTATCAACAAGTCTATCCCAACACTTAGGAAAG
66 CCAACTCTTATACAAAGAGTTGGCCAAAGTGTATATCGACAAGTCTATCCCAACACTTAGGAAAG
*
37803105 TGTCGGCCTA
131 TGTCGGCCCA
* * *
37803115 AAAGTGTCGGCATAGTGTTGGACAAAGCCGACTTTTATTTAAGCGTTGCCTTAGACATGCATATC
1 AAAGTGTCGGCATAGTGTTAGACAAAGCCGACTCTTATTTAAGCGTTGCCTTAGGCATGCATATC
* *
37803180 CCAACTCTTATATAAAGAGTTGGCCAAAGTGTATATCGACAAATCTATCCCAACACTTAGGAAAG
66 CCAACTCTTATACAAAGAGTTGGCCAAAGTGTATATCGACAAGTCTATCCCAACACTTAGGAAAG
**
37803245 TGTTAGCCCA
131 TGTCGGCCCA
* * *
37803255 AAAGTGTCGGCATAGTGTTAGAAAAAGTCGACTCTTATTTAAGCATTGCCTTAGGCATGCATATC
1 AAAGTGTCGGCATAGTGTTAGACAAAGCCGACTCTTATTTAAGCGTTGCCTTAGGCATGCATATC
* * * * *
37803320 CCAACTCTTATACAAAGTGTTGGCCAAAGTGTATGTCGACAAGTTTATCCTAACACTTAAGAAAG
66 CCAACTCTTATACAAAGAGTTGGCCAAAGTGTATATCGACAAGTCTATCCCAACACTTAGGAAAG
37803385 TGTCG
131 TGTCG
37803390 TAATAGGCCT
Statistics
Matches: 243, Mismatches: 32, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
140 243 1.00
ACGTcount: A:0.32, C:0.20, G:0.20, T:0.28
Consensus pattern (140 bp):
AAAGTGTCGGCATAGTGTTAGACAAAGCCGACTCTTATTTAAGCGTTGCCTTAGGCATGCATATC
CCAACTCTTATACAAAGAGTTGGCCAAAGTGTATATCGACAAGTCTATCCCAACACTTAGGAAAG
TGTCGGCCCA
Found at i:37811141 original size:40 final size:40
Alignment explanation
Indices: 37811086--37811343 Score: 342
Period size: 40 Copynumber: 6.5 Consensus size: 40
37811076 TGGATGATAA
* * * *
37811086 CCGGGCTAAGTCCCGAAGGCATTTGCGCTAGTGACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTA-TAT
*
37811126 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATAT
37811166 CCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATAT
*
37811206 CCGGGCTATGTCCCGAAGGCATTGGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATAT
* * *
37811246 CCGGGCTATGTCCCGAAGGCATTCGAGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATAT
* * * *
37811286 CCGGGCTATGTCCCAAAGGCATTCGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTA-CTATAT
* *
37811326 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
37811344 TACTTGGCTT
Statistics
Matches: 204, Mismatches: 12, Indels: 5
0.92 0.05 0.02
Matches are distributed among these distances:
39 15 0.07
40 189 0.93
ACGTcount: A:0.22, C:0.24, G:0.29, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATAT
Found at i:37816804 original size:30 final size:30
Alignment explanation
Indices: 37816770--37816834 Score: 96
Period size: 30 Copynumber: 2.2 Consensus size: 30
37816760 ATTTAGACTT
*
37816770 AACTAATATTCCTATATCT-GACTATGAAAA
1 AACTAATATTCCAATAT-TAGACTATGAAAA
*
37816800 AACTAATATTTCAATATTAGACTATGAAAA
1 AACTAATATTCCAATATTAGACTATGAAAA
37816830 AACTA
1 AACTA
37816835 TAGACGATTG
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
29 1 0.03
30 31 0.97
ACGTcount: A:0.48, C:0.14, G:0.06, T:0.32
Consensus pattern (30 bp):
AACTAATATTCCAATATTAGACTATGAAAA
Found at i:37821112 original size:9 final size:9
Alignment explanation
Indices: 37821065--37821153 Score: 74
Period size: 9 Copynumber: 9.7 Consensus size: 9
37821055 ATTTTTATGT
37821065 ATTATGTAA
1 ATTATGTAA
*
37821074 GTTATGTAA
1 ATTATGTAA
37821083 ATTATGTAA
1 ATTATGTAA
* ***
37821092 GTTATCCGA
1 ATTATGTAA
37821101 ATTATGTAA
1 ATTATGTAA
37821110 ATTATGATATA
1 ATTATG-TA-A
37821121 TATTTATGT--
1 -A-TTATGTAA
37821130 ATTATGTAA
1 ATTATGTAA
37821139 ATTATGTAA
1 ATTATGTAA
*
37821148 AATATG
1 ATTATG
37821154 ATATATATTT
Statistics
Matches: 63, Mismatches: 11, Indels: 12
0.73 0.13 0.14
Matches are distributed among these distances:
7 6 0.10
8 1 0.02
9 46 0.73
10 2 0.03
11 1 0.02
12 2 0.03
13 5 0.08
ACGTcount: A:0.39, C:0.02, G:0.13, T:0.45
Consensus pattern (9 bp):
ATTATGTAA
Found at i:37821467 original size:27 final size:27
Alignment explanation
Indices: 37821437--37821491 Score: 110
Period size: 27 Copynumber: 2.0 Consensus size: 27
37821427 CTGATTAAAA
37821437 TAAATAAAATAAAACTTTAAATACAAT
1 TAAATAAAATAAAACTTTAAATACAAT
37821464 TAAATAAAATAAAACTTTAAATACAAT
1 TAAATAAAATAAAACTTTAAATACAAT
37821491 T
1 T
37821492 TACTTTAATT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.62, C:0.07, G:0.00, T:0.31
Consensus pattern (27 bp):
TAAATAAAATAAAACTTTAAATACAAT
Found at i:37821555 original size:86 final size:88
Alignment explanation
Indices: 37821465--37821723 Score: 353
Period size: 86 Copynumber: 2.9 Consensus size: 88
37821455 AAATACAATT
*
37821465 AAATAAAATAAAACTTTAAATACAATTTACTTTAATTAGGTAATTTAAAAATAAAATAAAAGTAG
1 AAATAAAATAAAACTTTAAATACAATTTAATTTAATTAGGTAATTTAAAAATAAAATAAAAGTAG
* *
37821530 ACTAAAATTTTTTC-GT-GAT-TA
66 AC-AAAATTTTTTCAATAAATATA
* * *
37821551 AAATAAAATAAAACTTTAAATACAATTTAATTTAATGAGGTAATTTAAAAATAAAATAAAATTTG
1 AAATAAAATAAAACTTTAAATACAATTTAATTTAATTAGGTAATTTAAAAATAAAATAAAAGTAG
37821616 ACAAAAGTTTTTTCATAAATAAAATAAAATA
66 ACAAAA-TTTTTTC---AAT-AAAT---ATA
37821647 AAATAAAATAAAACTTTAAATACAATTTAATTTAATTAGGTAATTTAAAAATAAAATAAAAGTAG
1 AAATAAAATAAAACTTTAAATACAATTTAATTTAATTAGGTAATTTAAAAATAAAATAAAAGTAG
*
37821712 ACAAAATATTTT
66 ACAAAATTTTTT
37821724 AAACATTGTT
Statistics
Matches: 152, Mismatches: 10, Indels: 13
0.87 0.06 0.07
Matches are distributed among these distances:
85 4 0.03
86 70 0.46
90 1 0.01
92 2 0.01
95 5 0.03
96 70 0.46
ACGTcount: A:0.55, C:0.05, G:0.06, T:0.34
Consensus pattern (88 bp):
AAATAAAATAAAACTTTAAATACAATTTAATTTAATTAGGTAATTTAAAAATAAAATAAAAGTAG
ACAAAATTTTTTCAATAAATATA
Found at i:37821603 original size:117 final size:115
Alignment explanation
Indices: 37821348--37821577 Score: 385
Period size: 117 Copynumber: 2.0 Consensus size: 115
37821338 TTCGTGATTA
*
37821348 AAATAAAATAAAACTTTAAATACAATTTAATTTATTTAGGTAATTTAAAAATAAAATAAAAGTAG
1 AAATAAAATAAAACTTTAAATACAATTTAATTTAATTAGGTAATTTAAAAATAAAATAAAAGTAG
37821413 ACAAAAGTTTTTTCCTGATTAAAATAAATAAAATAAAACTTTAAATACAATT
66 ACAAAAGTTTTTTCCTGATT--AATAAATAAAATAAAACTTTAAATACAATT
*
37821465 AAATAAAATAAAACTTTAAATACAATTTACTTTAATTAGGTAATTTAAAAATAAAATAAAAGTAG
1 AAATAAAATAAAACTTTAAATACAATTTAATTTAATTAGGTAATTTAAAAATAAAATAAAAGTAG
*
37821530 ACTAAAA-TTTTTTCGTGATT-A-AAATAAAATAAAACTTTAAATACAATT
66 AC-AAAAGTTTTTTCCTGATTAATAAATAAAATAAAACTTTAAATACAATT
37821578 TAATTTAATG
Statistics
Matches: 109, Mismatches: 3, Indels: 6
0.92 0.03 0.05
Matches are distributed among these distances:
113 27 0.25
114 1 0.01
117 77 0.71
118 4 0.04
ACGTcount: A:0.54, C:0.06, G:0.05, T:0.34
Consensus pattern (115 bp):
AAATAAAATAAAACTTTAAATACAATTTAATTTAATTAGGTAATTTAAAAATAAAATAAAAGTAG
ACAAAAGTTTTTTCCTGATTAATAAATAAAATAAAACTTTAAATACAATT
Found at i:37821642 original size:5 final size:5
Alignment explanation
Indices: 37821632--37821659 Score: 56
Period size: 5 Copynumber: 5.6 Consensus size: 5
37821622 GTTTTTTCAT
37821632 AAATA AAATA AAATA AAATA AAATA AAA
1 AAATA AAATA AAATA AAATA AAATA AAA
37821660 CTTTAAATAC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.82, C:0.00, G:0.00, T:0.18
Consensus pattern (5 bp):
AAATA
Found at i:37821860 original size:99 final size:99
Alignment explanation
Indices: 37821680--37821962 Score: 423
Period size: 99 Copynumber: 2.9 Consensus size: 99
37821670 AATTTAATTT
* **
37821680 AATTAGGTAATTTAAAAATAAAATAAAAGTA--GACAA--AAT-ATTTTAAACATTGTTAAGTCT
1 AATTAGGTAATTTAAAAATAAAATAAAA-TATTTA-AATTAATGACATTAAAC-TTGTTAAGTCT
*
37821740 TTCTTTTAATTTGCATCTATTAATTTGTTAATTGAAA
63 TTCTTTTAATTTGCATTTATTAATTTGTTAATTGAAA
37821777 AATTAGGTAATTTAAAAATAAAATAAAATATTTAAATTAATGACATTAAACTTGTTAAGTCTTTC
1 AATTAGGTAATTTAAAAATAAAATAAAATATTTAAATTAATGACATTAAACTTGTTAAGTCTTTC
**
37821842 TTTTAATTTGCATTTATTAATTTGTTAATTTTAA
66 TTTTAATTTGCATTTATTAATTTGTTAATTGAAA
* * *
37821876 AATTAGGTAATATAAAAATAAAATAAAATATTTAAATTAATGACATTAAACTTGTTAACTCTTAC
1 AATTAGGTAATTTAAAAATAAAATAAAATATTTAAATTAATGACATTAAACTTGTTAAGTCTTTC
37821941 TTTTAATTTGCATTTATTAATT
66 TTTTAATTTGCATTTATTAATT
37821963 CTTTTGGTAA
Statistics
Matches: 172, Mismatches: 9, Indels: 8
0.91 0.05 0.04
Matches are distributed among these distances:
96 2 0.01
97 30 0.17
98 1 0.01
99 132 0.77
100 7 0.04
ACGTcount: A:0.43, C:0.06, G:0.07, T:0.43
Consensus pattern (99 bp):
AATTAGGTAATTTAAAAATAAAATAAAATATTTAAATTAATGACATTAAACTTGTTAAGTCTTTC
TTTTAATTTGCATTTATTAATTTGTTAATTGAAA
Found at i:37822625 original size:8 final size:8
Alignment explanation
Indices: 37822612--37822666 Score: 67
Period size: 8 Copynumber: 7.0 Consensus size: 8
37822602 CAAAAAATTC
37822612 CACTATTA
1 CACTATTA
37822620 CACTATTA
1 CACTATTA
37822628 CACTA-TA
1 CACTATTA
* *
37822635 CGCAATTA
1 CACTATTA
*
37822643 CACTATTC
1 CACTATTA
*
37822651 CACTATTC
1 CACTATTA
37822659 CACTATTA
1 CACTATTA
37822667 TCATAATCAC
Statistics
Matches: 40, Mismatches: 6, Indels: 2
0.83 0.12 0.04
Matches are distributed among these distances:
7 5 0.12
8 35 0.88
ACGTcount: A:0.35, C:0.29, G:0.02, T:0.35
Consensus pattern (8 bp):
CACTATTA
Found at i:37824753 original size:158 final size:155
Alignment explanation
Indices: 37824384--37824754 Score: 371
Period size: 158 Copynumber: 2.4 Consensus size: 155
37824374 ATCTCCAAAC
*
37824384 AAAACGACGCCG-TTTCTGTTAAGCACT-AA-TGTTTTTTGCGGCGTTTATTTAAAAAACACCGC
1 AAAACGACGCCGTTTTCT-TTAA--ACTAAACTGTTTTTTGCGGCGTTT-TTTTAAAAACACCGC
* * *
37824446 TAATCCCTATATATACAACTAAAACGATGACGTGTACGGTAAACTTTAATTATTTTGCAGCGTTT
62 TAATCCCTATATATACAACTAAAACGACGACGTGTACAGTAAACTTTAATTATGTTGCAGCGTTT
37824511 TTAAAAGCGCCACTAATACCCTCATATACT
127 TTAAAAGCGCCACTAATA-CCTCATATACT
* * * * * * *
37824541 AAAACGGCGTCGTTTTCTTTAAACTAAACTGTCTTTTGTGGCGTTTTCTATAAAAGCGCCGCTAA
1 AAAACGACGCCGTTTTCTTTAAACTAAACTGTTTTTTGCGGCGTTTT-TTTAAAAACACCGCTAA
* * * * *
37824606 TCCCCTATATATTCAACTAAAACGACGACGCT-T-CTAGTACACTTTACTTCTGTTGCGGCGTTT
65 T-CCCTATATATACAACTAAAACGACGACG-TGTAC-AGTAAACTTTAATTATGTTGCAGCGTTT
*
37824669 TTCAAAA-TGCCACTAATA-CTCA-ATCCAACT
127 TT-AAAAGCGCCACTAATACCTCATAT---ACT
* * * *
37824699 AAAACGATGCCGTTTTCTTTCAACTATACTATTTTTTTGCGGCGTTTTTTTAAAAA
1 AAAACGACGCCGTTTTCTTTAAACTAAACT-GTTTTTTGCGGCGTTTTTTTAAAAA
37824755 AACGCCACTA
Statistics
Matches: 175, Mismatches: 27, Indels: 23
0.78 0.12 0.10
Matches are distributed among these distances:
155 5 0.03
156 7 0.04
157 44 0.25
158 100 0.57
159 19 0.11
ACGTcount: A:0.30, C:0.22, G:0.14, T:0.35
Consensus pattern (155 bp):
AAAACGACGCCGTTTTCTTTAAACTAAACTGTTTTTTGCGGCGTTTTTTTAAAAACACCGCTAAT
CCCTATATATACAACTAAAACGACGACGTGTACAGTAAACTTTAATTATGTTGCAGCGTTTTTAA
AAGCGCCACTAATACCTCATATACT
Found at i:37825573 original size:7 final size:7
Alignment explanation
Indices: 37825549--37825601 Score: 52
Period size: 7 Copynumber: 7.4 Consensus size: 7
37825539 CATATCTAAT
*
37825549 TAAACTC
1 TAAACCC
*
37825556 TAACCCC
1 TAAACCC
*
37825563 TAAACCA
1 TAAACCC
37825570 TAAACCC
1 TAAACCC
*
37825577 TTAACCC
1 TAAACCC
37825584 TAAACCCC
1 TAAA-CCC
*
37825592 TAACCCC
1 TAAACCC
37825599 TAA
1 TAA
37825602 CCCGACCCTA
Statistics
Matches: 37, Mismatches: 8, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
7 31 0.84
8 6 0.16
ACGTcount: A:0.40, C:0.42, G:0.00, T:0.19
Consensus pattern (7 bp):
TAAACCC
Found at i:37825750 original size:14 final size:14
Alignment explanation
Indices: 37825716--37825760 Score: 54
Period size: 14 Copynumber: 3.2 Consensus size: 14
37825706 TCCTACACCT
* *
37825716 TAAACCCTGAACCA
1 TAAACCCTAAACTA
* *
37825730 TATACCCTAAATTA
1 TAAACCCTAAACTA
37825744 TAAACCCTAAACTA
1 TAAACCCTAAACTA
37825758 TAA
1 TAA
37825761 TGATAATTAA
Statistics
Matches: 25, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
14 25 1.00
ACGTcount: A:0.47, C:0.27, G:0.02, T:0.24
Consensus pattern (14 bp):
TAAACCCTAAACTA
Found at i:37829056 original size:12 final size:12
Alignment explanation
Indices: 37829039--37829068 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
37829029 AAAAACACCA
*
37829039 TTGAAGCTGACT
1 TTGAAGCAGACT
37829051 TTGAAGCAGACT
1 TTGAAGCAGACT
37829063 TTGAAG
1 TTGAAG
37829069 TAGATTTCCG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.30, C:0.13, G:0.27, T:0.30
Consensus pattern (12 bp):
TTGAAGCAGACT
Found at i:37829982 original size:6 final size:6
Alignment explanation
Indices: 37829973--37829998 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
37829963 TAATTTATCC
37829973 ATTTTA ATTTTA ATTTTA ATTTTA AT
1 ATTTTA ATTTTA ATTTTA ATTTTA AT
37829999 AATTTTGTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (6 bp):
ATTTTA
Found at i:37834539 original size:23 final size:23
Alignment explanation
Indices: 37834487--37834539 Score: 70
Period size: 23 Copynumber: 2.3 Consensus size: 23
37834477 AACCTGGACA
**
37834487 ACATTAAGACAACGTTTAAATGC
1 ACATTAAGACAACGTTTAAACAC
*
37834510 ACATTAAGACAAGGTTTAAACAC
1 ACATTAAGACAACGTTTAAACAC
*
37834533 ACTTTAA
1 ACATTAA
37834540 TTTGTAGGAA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.45, C:0.17, G:0.11, T:0.26
Consensus pattern (23 bp):
ACATTAAGACAACGTTTAAACAC
Found at i:37834642 original size:39 final size:39
Alignment explanation
Indices: 37834599--37834712 Score: 124
Period size: 38 Copynumber: 2.9 Consensus size: 39
37834589 TTGAAAACAA
* * *
37834599 ATATTTAAGACGTTGAAACTATGAAATAATTAAAGACCC
1 ATATTTAAGATGTTCAAACTATGACATAATTAAAGACCC
* * * * *
37834638 ATATTGATGATGTTCAGATTATGACATAATTAAA-ACTC
1 ATATTTAAGATGTTCAAACTATGACATAATTAAAGACCC
*
37834676 ATA-TTAATGATGTTCAAACTAAGACATAATTAAAGAC
1 ATATTTAA-GATGTTCAAACTATGACATAATTAAAGAC
37834713 TCAAACTAAA
Statistics
Matches: 60, Mismatches: 13, Indels: 4
0.78 0.17 0.05
Matches are distributed among these distances:
37 2 0.03
38 29 0.48
39 29 0.48
ACGTcount: A:0.45, C:0.11, G:0.12, T:0.32
Consensus pattern (39 bp):
ATATTTAAGATGTTCAAACTATGACATAATTAAAGACCC
Found at i:37834688 original size:38 final size:39
Alignment explanation
Indices: 37834614--37834715 Score: 143
Period size: 38 Copynumber: 2.6 Consensus size: 39
37834604 TAAGACGTTG
* * *
37834614 AAACTATGAAATAATTAAAGACCCATATTGATGATGTTC
1 AAACTATGACATAATTAAAGACTCATATTAATGATGTTC
* *
37834653 AGATTATGACATAATTAAA-ACTCATATTAATGATGTTC
1 AAACTATGACATAATTAAAGACTCATATTAATGATGTTC
*
37834691 AAACTAAGACATAATTAAAGACTCA
1 AAACTATGACATAATTAAAGACTCA
37834716 AACTAAAAAA
Statistics
Matches: 54, Mismatches: 8, Indels: 2
0.84 0.12 0.03
Matches are distributed among these distances:
38 33 0.61
39 21 0.39
ACGTcount: A:0.46, C:0.13, G:0.11, T:0.30
Consensus pattern (39 bp):
AAACTATGACATAATTAAAGACTCATATTAATGATGTTC
Found at i:37836672 original size:7 final size:7
Alignment explanation
Indices: 37836662--37836719 Score: 59
Period size: 7 Copynumber: 8.1 Consensus size: 7
37836652 AAAAAAAAGT
37836662 TAAAAAA
1 TAAAAAA
37836669 TAAAAAA
1 TAAAAAA
37836676 TAAAAAA
1 TAAAAAA
37836683 -AAATAAA
1 TAAA-AAA
37836690 -AAATAAA
1 TAAA-AAA
37836697 -AAAATAA
1 TAAAA-AA
37836704 TTAAAAAA
1 -TAAAAAA
37836712 TAAAAAA
1 TAAAAAA
37836719 T
1 T
37836720 GGTTCATGCG
Statistics
Matches: 47, Mismatches: 0, Indels: 8
0.85 0.00 0.15
Matches are distributed among these distances:
6 4 0.09
7 37 0.79
8 2 0.04
9 4 0.09
ACGTcount: A:0.83, C:0.00, G:0.00, T:0.17
Consensus pattern (7 bp):
TAAAAAA
Found at i:37836672 original size:19 final size:18
Alignment explanation
Indices: 37836663--37836718 Score: 89
Period size: 17 Copynumber: 3.2 Consensus size: 18
37836653 AAAAAAAGTT
37836663 AAAA-AATAAAAAATAAA
1 AAAATAATAAAAAATAAA
37836680 AAAA-AATAAAAAATAAA
1 AAAATAATAAAAAATAAA
37836697 AAAATAATTAAAAAATAAA
1 AAAATAA-TAAAAAATAAA
37836716 AAA
1 AAA
37836719 TGGTTCATGC
Statistics
Matches: 37, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
17 21 0.57
18 2 0.05
19 14 0.38
ACGTcount: A:0.86, C:0.00, G:0.00, T:0.14
Consensus pattern (18 bp):
AAAATAATAAAAAATAAA
Found at i:37836700 original size:26 final size:24
Alignment explanation
Indices: 37836650--37836719 Score: 95
Period size: 26 Copynumber: 2.8 Consensus size: 24
37836640 TTCAAAAATT
37836650 TAAAAAAAAAGTTAAAAAATAAAAAA
1 TAAAAAAAAA--TAAAAAATAAAAAA
37836676 TAAAAAAAAATAAAAAATAAAAAAA
1 TAAAAAAAAATAAAAAAT-AAAAAA
*
37836701 TAATTAAAAAATAAAAAAT
1 TAA-AAAAAAATAAAAAAT
37836720 GGTTCATGCG
Statistics
Matches: 41, Mismatches: 1, Indels: 4
0.89 0.02 0.09
Matches are distributed among these distances:
24 8 0.20
25 9 0.22
26 24 0.59
ACGTcount: A:0.81, C:0.00, G:0.01, T:0.17
Consensus pattern (24 bp):
TAAAAAAAAATAAAAAATAAAAAA
Found at i:37839735 original size:23 final size:23
Alignment explanation
Indices: 37839703--37839748 Score: 83
Period size: 23 Copynumber: 2.0 Consensus size: 23
37839693 AAGTAAAGAA
37839703 ATTGCATAATTTAGATTAATAGT
1 ATTGCATAATTTAGATTAATAGT
*
37839726 ATTGCGTAATTTAGATTAATAGT
1 ATTGCATAATTTAGATTAATAGT
37839749 GAGAGATGAA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.37, C:0.04, G:0.15, T:0.43
Consensus pattern (23 bp):
ATTGCATAATTTAGATTAATAGT
Found at i:37843941 original size:18 final size:20
Alignment explanation
Indices: 37843905--37843946 Score: 61
Period size: 20 Copynumber: 2.1 Consensus size: 20
37843895 AAATATGTAA
37843905 TTATATAGTAAAAATATATT
1 TTATATAGTAAAAATATATT
37843925 TTATAT-GTTAAAAATAT-TT
1 TTATATAG-TAAAAATATATT
37843944 TTA
1 TTA
37843947 ATTAATAACT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
19 6 0.29
20 15 0.71
ACGTcount: A:0.45, C:0.00, G:0.05, T:0.50
Consensus pattern (20 bp):
TTATATAGTAAAAATATATT
Found at i:37844262 original size:19 final size:18
Alignment explanation
Indices: 37844225--37844264 Score: 53
Period size: 19 Copynumber: 2.2 Consensus size: 18
37844215 CATAATGATA
* *
37844225 TATATAATATATTTTTAT
1 TATATAATACATATTTAT
37844243 TATATAATTACATATTTAT
1 TATATAA-TACATATTTAT
37844262 TAT
1 TAT
37844265 TTTTTATATA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
18 7 0.37
19 12 0.63
ACGTcount: A:0.40, C:0.03, G:0.00, T:0.57
Consensus pattern (18 bp):
TATATAATACATATTTAT
Found at i:37846605 original size:22 final size:22
Alignment explanation
Indices: 37846578--37846631 Score: 99
Period size: 22 Copynumber: 2.5 Consensus size: 22
37846568 CATGTTTGAT
37846578 TGTTGTTATTTACTGCATGCCA
1 TGTTGTTATTTACTGCATGCCA
*
37846600 TGTTGTTATTTACTGCATGCTA
1 TGTTGTTATTTACTGCATGCCA
37846622 TGTTGTTATT
1 TGTTGTTATT
37846632 ATCTGATGCA
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
22 31 1.00
ACGTcount: A:0.17, C:0.13, G:0.19, T:0.52
Consensus pattern (22 bp):
TGTTGTTATTTACTGCATGCCA
Found at i:37847739 original size:19 final size:18
Alignment explanation
Indices: 37847712--37847747 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
37847702 TGTAAGAAAG
37847712 AAAAAATTATAAAAAAATT
1 AAAAAATTA-AAAAAAATT
*
37847731 AAAATATTAAAAAAAAT
1 AAAAAATTAAAAAAAAT
37847748 AAGAAGATTG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 8 0.50
19 8 0.50
ACGTcount: A:0.75, C:0.00, G:0.00, T:0.25
Consensus pattern (18 bp):
AAAAAATTAAAAAAAATT
Found at i:37857311 original size:3 final size:3
Alignment explanation
Indices: 37857291--37857325 Score: 52
Period size: 3 Copynumber: 11.3 Consensus size: 3
37857281 TTTTTTATGG
*
37857291 TTA TTA TTG TTA TATA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA T-TA TTA TTA TTA TTA TTA TTA T
37857326 ATTTCCAAAT
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
3 26 0.90
4 3 0.10
ACGTcount: A:0.31, C:0.00, G:0.03, T:0.66
Consensus pattern (3 bp):
TTA
Found at i:37857374 original size:15 final size:15
Alignment explanation
Indices: 37857354--37857382 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
37857344 ACTCAAATAC
37857354 TTTTATTTATCTATG
1 TTTTATTTATCTATG
37857369 TTTTATTTATCTAT
1 TTTTATTTATCTAT
37857383 TTATATTTCT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.21, C:0.07, G:0.03, T:0.69
Consensus pattern (15 bp):
TTTTATTTATCTATG
Found at i:37857461 original size:3 final size:3
Alignment explanation
Indices: 37857433--37857605 Score: 107
Period size: 3 Copynumber: 55.3 Consensus size: 3
37857423 CTATTTCTAT
* * * *
37857433 TTA TGTA TTA ATA TCA TTA TTTA TTA TTA TTT TTA TAAA TTA TTA TTA
1 TTA T-TA TTA TTA TTA TTA -TTA TTA TTA TTA TTA T-TA TTA TTA TTA
* * * * *
37857481 TTA TCT- TTA TTA TTA CTA TTA GTA CTA TTA TTA TTT TCTA TCA TTA
1 TTA T-TA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T-TA TTA TTA
* * ** *
37857527 TTA TTA TTA CCTTT TTA CTA TTA TTA TT- TCGTA CCA TTA TTG TTA TTA
1 TTA TTA TTA --TTA TTA TTA TTA TTA TTA T--TA TTA TTA TTA TTA TTA
* *
37857575 TTA CTA CTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
37857606 CTATAGTATA
Statistics
Matches: 130, Mismatches: 29, Indels: 22
0.72 0.16 0.12
Matches are distributed among these distances:
2 2 0.02
3 114 0.88
4 12 0.09
5 2 0.02
ACGTcount: A:0.30, C:0.08, G:0.02, T:0.60
Consensus pattern (3 bp):
TTA
Found at i:37857693 original size:3 final size:3
Alignment explanation
Indices: 37857685--37857754 Score: 54
Period size: 3 Copynumber: 23.0 Consensus size: 3
37857675 ATATTTTTTA
* * *
37857685 TAT TAT TAT TAT TCCT TA- CAT TAT TAT TAT TAT TAT TAT TAT TTT
1 TAT TAT TAT TAT T-AT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* *
37857730 TGT TAT TGA- TATT TAT AAT TAT TAT
1 TAT TAT T-AT TA-T TAT TAT TAT TAT
37857755 ATTTATTTCA
Statistics
Matches: 53, Mismatches: 9, Indels: 10
0.74 0.12 0.14
Matches are distributed among these distances:
2 2 0.04
3 46 0.87
4 5 0.09
ACGTcount: A:0.30, C:0.04, G:0.03, T:0.63
Consensus pattern (3 bp):
TAT
Found at i:37861503 original size:53 final size:53
Alignment explanation
Indices: 37861405--37861509 Score: 129
Period size: 53 Copynumber: 2.0 Consensus size: 53
37861395 ATAAACTACT
* * * ** *
37861405 ATAAGACAAAGATCCCATGTAAGACCATGCCAAGGCATGTCAATGGTGAGTTC
1 ATAAGACAAAGATACCACGTAAGACCATGCCAAGACATGAAAATGGTAAGTTC
* * *
37861458 ATAAGGCAAGGATACCACGTAAGACCATGTCAAGACATGAAAATGGTAAGTT
1 ATAAGACAAAGATACCACGTAAGACCATGCCAAGACATGAAAATGGTAAGTT
37861510 AAAAAGGAAA
Statistics
Matches: 43, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
53 43 1.00
ACGTcount: A:0.39, C:0.18, G:0.23, T:0.20
Consensus pattern (53 bp):
ATAAGACAAAGATACCACGTAAGACCATGCCAAGACATGAAAATGGTAAGTTC
Found at i:37863044 original size:40 final size:40
Alignment explanation
Indices: 37862999--37863190 Score: 231
Period size: 40 Copynumber: 4.8 Consensus size: 40
37862989 TATAACCACA
** *
37862999 AGCACAAATGCCTTCGGGTCTTAGCCCGGATTTAGTAACT
1 AGCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATAACT
* * * *
37863039 CGCACAAATGCCTTCGGATCTTAGTCCGGATAAAATCACT
1 AGCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATAACT
* * * * **
37863079 AGCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACT
1 AGCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATAACT
* *
37863119 CGCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATCACT
1 AGCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATAACT
* *
37863159 AGCACAATTGCCTTCGGGACTTAGCCCGGATA
1 AGCACAAATGCCTTCGGGTCTTAGCCCGGATA
37863191 TCATTCAAAT
Statistics
Matches: 124, Mismatches: 28, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
40 124 1.00
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (40 bp):
AGCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATAACT
Found at i:37863119 original size:80 final size:79
Alignment explanation
Indices: 37862971--37863191 Score: 318
Period size: 80 Copynumber: 2.8 Consensus size: 79
37862961 ACCCAAGTTT
* * * * * *
37862971 CTTCGGAAT-TTAGCCGGATATAACCACAAGCACAAATGCCTTCGGGTCTTAGCCCGGATTTAGT
1 CTTCGG-ATCTTAGCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAGCCCGGATATAGC
37863035 AACTCGCACAAATGC
65 AACTCGCACAAATGC
* *
37863050 CTTCGGATCTTAGTCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAACCCGGGTATAGC
1 CTTCGGATCTTAG-CCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAGCCCGGATATAGC
37863115 AACTCGCACAAATGC
65 AACTCGCACAAATGC
* *
37863130 CTTCGGGTCTTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGACTTAGCCCGGATAT
1 CTTCGGATCTTAG-CCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAGCCCGGATAT
37863192 CATTCAAATG
Statistics
Matches: 127, Mismatches: 13, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
78 2 0.02
79 10 0.08
80 115 0.91
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (79 bp):
CTTCGGATCTTAGCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAGCCCGGATATAGCA
ACTCGCACAAATGC
Found at i:37866717 original size:27 final size:27
Alignment explanation
Indices: 37866687--37866864 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
37866677 ATATTGAGTC
* * * *
37866687 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
37866714 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
37866741 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
37866769 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
37866796 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
37866823 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
37866850 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
37866865 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:37866826 original size:82 final size:81
Alignment explanation
Indices: 37866708--37866863 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
37866698 TGCTATATAA
* *
37866708 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
37866773 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
37866790 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
37866854 CACTTAGTGC
65 CACTTAGTGC
37866864 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:37874834 original size:27 final size:27
Alignment explanation
Indices: 37874804--37874981 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
37874794 ATATTGAGTC
* * * *
37874804 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
37874831 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
37874858 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
37874886 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
37874913 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
37874940 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
37874967 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
37874982 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:37874943 original size:82 final size:81
Alignment explanation
Indices: 37874825--37874980 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
37874815 TGCTATATAA
* *
37874825 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
37874890 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
37874907 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
37874971 CACTTAGTGC
65 CACTTAGTGC
37874981 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:37882535 original size:40 final size:40
Alignment explanation
Indices: 37882490--37882681 Score: 231
Period size: 40 Copynumber: 4.8 Consensus size: 40
37882480 TATAACCACA
** *
37882490 AGCACAAATGCCTTCGGGTCTTAGCCCGGATTTAGTAACT
1 AGCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATAACT
* * * *
37882530 CGCACAAATGCCTTCGGATCTTAGTCCGGATAAAATCACT
1 AGCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATAACT
* * * * **
37882570 AGCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACT
1 AGCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATAACT
* *
37882610 CGCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATCACT
1 AGCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATAACT
* *
37882650 AGCACAATTGCCTTCGGGACTTAGCCCGGATA
1 AGCACAAATGCCTTCGGGTCTTAGCCCGGATA
37882682 TCATTCAAAT
Statistics
Matches: 124, Mismatches: 28, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
40 124 1.00
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (40 bp):
AGCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATAACT
Found at i:37882610 original size:80 final size:79
Alignment explanation
Indices: 37882462--37882682 Score: 318
Period size: 80 Copynumber: 2.8 Consensus size: 79
37882452 ACCCAAGTTT
* * * * * *
37882462 CTTCGGAAT-TTAGCCGGATATAACCACAAGCACAAATGCCTTCGGGTCTTAGCCCGGATTTAGT
1 CTTCGG-ATCTTAGCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAGCCCGGATATAGC
37882526 AACTCGCACAAATGC
65 AACTCGCACAAATGC
* *
37882541 CTTCGGATCTTAGTCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAACCCGGGTATAGC
1 CTTCGGATCTTAG-CCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAGCCCGGATATAGC
37882606 AACTCGCACAAATGC
65 AACTCGCACAAATGC
* *
37882621 CTTCGGGTCTTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGACTTAGCCCGGATAT
1 CTTCGGATCTTAG-CCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAGCCCGGATAT
37882683 CATTCAAATG
Statistics
Matches: 127, Mismatches: 13, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
78 2 0.02
79 10 0.08
80 115 0.91
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (79 bp):
CTTCGGATCTTAGCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAGCCCGGATATAGCA
ACTCGCACAAATGC
Found at i:37887009 original size:57 final size:57
Alignment explanation
Indices: 37886921--37887034 Score: 228
Period size: 57 Copynumber: 2.0 Consensus size: 57
37886911 CAATTCTGAG
37886921 GATGACAACGAGGATGCTGTCTATCCACCGGGCTTCACCCAACAAACACCCAAGCAC
1 GATGACAACGAGGATGCTGTCTATCCACCGGGCTTCACCCAACAAACACCCAAGCAC
37886978 GATGACAACGAGGATGCTGTCTATCCACCGGGCTTCACCCAACAAACACCCAAGCAC
1 GATGACAACGAGGATGCTGTCTATCCACCGGGCTTCACCCAACAAACACCCAAGCAC
37887035 AACCCAATGT
Statistics
Matches: 57, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
57 57 1.00
ACGTcount: A:0.32, C:0.35, G:0.19, T:0.14
Consensus pattern (57 bp):
GATGACAACGAGGATGCTGTCTATCCACCGGGCTTCACCCAACAAACACCCAAGCAC
Found at i:37891428 original size:143 final size:138
Alignment explanation
Indices: 37891161--37891521 Score: 426
Period size: 143 Copynumber: 2.6 Consensus size: 138
37891151 ATTTGTGTAC
* * * * * *
37891161 CAGTGTAAGACCATGTCTGAGACATGGCTTCGAA-ATTGAGACGAGTGCCAGTGTAAGA-CATGT
1 CAGTGTAAGACCATGTCTGGGACATGGCATC-AACATGGATACGAGAGCTAGTGTAAGACCATGT
* *
37891224 CCGGGACAT-GCATCGGCCTCGTGACTTAAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCT
65 CTGGGACATGGCATCGGCCTCGTGA-TTAAGCCAGTGTAAGACATGTCTGGGACATGCATCGG--
37891288 ACAAGACATGT-
127 ACAAGACATGTG
*
37891299 CAGTGTAAGACCATGTCTGGGACATGGCATCAACATGGATACGCAAGAGCTAGTGTAAAACCATG
1 CAGTGTAAGACCATGTCTGGGACATGGCATCAACATGGATACG--AGAGCTAGTGTAAGACCATG
*
37891364 TCTGGGACATGGCATCGGCCTCGATG-TTGATAGCCAGTGTAAGACATGTCTGGGACATGTATCG
64 TCTGGGACATGGCATCGGCCTCG-TGATT-A-AGCCAGTGTAAGACATGTCTGGGACATGCATCG
* **
37891428 GATAAGAGTTGTG
126 GACAAGACATGTG
* * * *
37891441 CTAGTGTAAGACCATGTCTGGGACATGACATCAGCACGTAAGTACGAGAGCTAGTGTAAGACCAT
1 C-AGTGTAAGACCATGTCTGGGACATGGCATCAACATG-GA-TACGAGAGCTAGTGTAAGACCAT
37891506 GTCTGGGACATGGCAT
63 GTCTGGGACATGGCAT
37891522 TAGCAACTTA
Statistics
Matches: 193, Mismatches: 18, Indels: 19
0.84 0.08 0.08
Matches are distributed among these distances:
137 2 0.01
138 36 0.19
140 12 0.06
141 23 0.12
142 14 0.07
143 101 0.52
144 1 0.01
145 4 0.02
ACGTcount: A:0.28, C:0.20, G:0.29, T:0.23
Consensus pattern (138 bp):
CAGTGTAAGACCATGTCTGGGACATGGCATCAACATGGATACGAGAGCTAGTGTAAGACCATGTC
TGGGACATGGCATCGGCCTCGTGATTAAGCCAGTGTAAGACATGTCTGGGACATGCATCGGACAA
GACATGTG
Found at i:37891455 original size:93 final size:95
Alignment explanation
Indices: 37891347--37891517 Score: 240
Period size: 93 Copynumber: 1.8 Consensus size: 95
37891337 ATACGCAAGA
* * * * * *
37891347 GCTAGTGTAAAACCATGTCTGGGACATGGCATCGGCCTCG-ATGT-TGATAGCCAGTGTAAGA-C
1 GCTAGTGTAAAACCATGTCTGGGACATGACATCAG-CACGTAAGTACGAGAGCCAGTGTAAGACC
37891409 ATGTCTGGGACATGTATCGGATAAGAGTTGT
65 ATGTCTGGGACATGTATCGGATAAGAGTTGT
* *
37891440 GCTAGTGTAAGACCATGTCTGGGACATGACATCAGCACGTAAGTACGAGAGCTAGTGTAAGACCA
1 GCTAGTGTAAAACCATGTCTGGGACATGACATCAGCACGTAAGTACGAGAGCCAGTGTAAGACCA
37891505 TGTCTGGGACATG
66 TGTCTGGGACATG
37891518 GCATTAGCAA
Statistics
Matches: 67, Mismatches: 8, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
92 3 0.04
93 35 0.52
94 14 0.21
95 15 0.22
ACGTcount: A:0.27, C:0.18, G:0.30, T:0.25
Consensus pattern (95 bp):
GCTAGTGTAAAACCATGTCTGGGACATGACATCAGCACGTAAGTACGAGAGCCAGTGTAAGACCA
TGTCTGGGACATGTATCGGATAAGAGTTGT
Found at i:37891499 original size:50 final size:49
Alignment explanation
Indices: 37891252--37891526 Score: 211
Period size: 50 Copynumber: 5.8 Consensus size: 49
37891242 TCGTGACTTA
*
37891252 AGCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCTAC-AAG-AC-A-
1 AGCTAGTGTAAGACCATGTCTGGGACATGGCATCAGC-ACGAAGTACGAG
* * * *
37891296 TG-TCAGTGTAAGACCATGTCTGGGACATGGCATCAACATGGA-TACGCAAG
1 AGCT-AGTGTAAGACCATGTCTGGGACATGGCATCAGCACGAAGTACG--AG
* * * * * *
37891346 AGCTAGTGTAAAACCATGTCTGGGACATGGCATCGGCCTCGATGT-TGAT
1 AGCTAGTGTAAGACCATGTCTGGGACATGGCATCAG-CACGAAGTACGAG
* * * * *
37891395 AGCCAGTGTAAGA-CATGTCTGGGACAT-GTATC-GGA-TAAG-A-GTTG
1 AGCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCACGAAGTACG-AG
* *
37891439 TGCTAGTGTAAGACCATGTCTGGGACATGACATCAGCACGTAAGTACGAG
1 AGCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCACG-AAGTACGAG
*
37891489 AGCTAGTGTAAGACCATGTCTGGGACATGGCATTAGCA
1 AGCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCA
37891527 ACTTAACCCA
Statistics
Matches: 176, Mismatches: 34, Indels: 36
0.72 0.14 0.15
Matches are distributed among these distances:
43 2 0.01
44 23 0.13
45 29 0.16
46 13 0.07
47 6 0.03
48 14 0.08
49 16 0.09
50 67 0.38
51 5 0.03
52 1 0.01
ACGTcount: A:0.29, C:0.19, G:0.29, T:0.23
Consensus pattern (49 bp):
AGCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCACGAAGTACGAG
Found at i:37892608 original size:23 final size:21
Alignment explanation
Indices: 37892558--37892614 Score: 69
Period size: 21 Copynumber: 2.6 Consensus size: 21
37892548 CGGGTGAAGG
* *
37892558 ACACGGGCGTATGCCCTAAGC
1 ACACGGGCGTGTGCCCTAACC
*
37892579 ACACGGGAGTGTGCCCTATACC
1 ACACGGGCGTGTGCCCTA-ACC
37892601 TACACGGGCGTGTG
1 -ACACGGGCGTGTG
37892615 GCACCTAAAA
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
21 16 0.53
22 2 0.07
23 12 0.40
ACGTcount: A:0.21, C:0.30, G:0.32, T:0.18
Consensus pattern (21 bp):
ACACGGGCGTGTGCCCTAACC
Found at i:37900378 original size:80 final size:79
Alignment explanation
Indices: 37900239--37900394 Score: 201
Period size: 80 Copynumber: 2.0 Consensus size: 79
37900229 GGACTAAGAT
**
37900239 CCGAAGGCATTTGTACGAGTTACTAAATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTA-CT
1 CCGAAGGCATTTGTACGAGTTACTAAATCCGGACTAAGATCCGAAGGCATTTGAACGAG-TAGCT
37900303 AAATCCGGGTTAAGTC
65 AAATCC-GGTTAAGTC
* * *
37900319 CCGAAGGCATTTGTGCGAGTTACTATAA-CCGGGCTATG-TCCCGAAGGCATTTGAACGAGTAGC
1 CCGAAGGCATTTGTACGAGTTACTA-AATCCGGACTAAGAT-CCGAAGGCATTTGAACGAGTAGC
*
37900382 TATATCCGGTTAA
64 TAAATCCGGTTAA
37900395 ATTGAAGGTA
Statistics
Matches: 67, Mismatches: 6, Indels: 7
0.84 0.08 0.09
Matches are distributed among these distances:
79 9 0.13
80 56 0.84
81 2 0.03
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.26
Consensus pattern (79 bp):
CCGAAGGCATTTGTACGAGTTACTAAATCCGGACTAAGATCCGAAGGCATTTGAACGAGTAGCTA
AATCCGGTTAAGTC
Found at i:37900385 original size:40 final size:40
Alignment explanation
Indices: 37900187--37900378 Score: 221
Period size: 40 Copynumber: 4.8 Consensus size: 40
37900177 TTGAATGATG
* * * * *
37900187 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTACGAGTTACTAAA
*
37900226 TCCGGACTAAGAT-CCGAAGGCATTTGTACGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTACGAGTTACTAAA
* *
37900266 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTACGAGTTACTAAA
* *
37900306 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTACGAGTTACTA-AA
* *
37900347 -CCGGGCTATGTCCCGAAGGCATTTGAACGAGT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTACGAGT
37900379 AGCTATATCC
Statistics
Matches: 136, Mismatches: 13, Indels: 7
0.87 0.08 0.04
Matches are distributed among these distances:
39 19 0.14
40 115 0.85
41 2 0.01
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTACGAGTTACTAAA
Found at i:37906870 original size:120 final size:119
Alignment explanation
Indices: 37906639--37906896 Score: 301
Period size: 120 Copynumber: 2.2 Consensus size: 119
37906629 TTGAATGATG
* * *
37906639 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAGTGACCATATCCGGACTAAGATCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCTTTGTGCGAGTGACCAAATCCGGACTAAGATCCGAAGGCATTTG
**
37906704 TACGAGTTACTAAATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTA-CTAAA
66 TACGAGTTACTAAATCCGGACTAAGATCCGAAGGCATTTGAACGAG-TAGCTAAA
* * **
37906758 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGC-TTTGTGCGAGTGACCAAATCCGGACTAAGAT-CCGAAGGCATT
* * * *
37906822 TGTGCGAGTTACTATAA-CCGGGCTATG-TCCCGAAGGCATTTGAACGAGTAGCTATA
64 TGTACGAGTTACTA-AATCCGGACTAAGAT-CCGAAGGCATTTGAACGAGTAGCTAAA
* *
37906878 TCC-GGTTAAATTCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
37906897 TACGTGATTT
Statistics
Matches: 119, Mismatches: 15, Indels: 10
0.83 0.10 0.07
Matches are distributed among these distances:
119 38 0.32
120 79 0.66
121 2 0.02
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (119 bp):
TCCGGGTTAAGTCCCGAAGGCTTTGTGCGAGTGACCAAATCCGGACTAAGATCCGAAGGCATTTG
TACGAGTTACTAAATCCGGACTAAGATCCGAAGGCATTTGAACGAGTAGCTAAA
Found at i:37906877 original size:40 final size:40
Alignment explanation
Indices: 37906639--37906863 Score: 305
Period size: 40 Copynumber: 5.7 Consensus size: 40
37906629 TTGAATGATG
* * * *
37906639 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
37906678 TCCGGACTAAGAT-CCGAAGGCATTTGTACGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
37906718 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
37906758 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
37906798 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
37906839 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
37906864 AACGAGTAGC
Statistics
Matches: 171, Mismatches: 11, Indels: 7
0.90 0.06 0.04
Matches are distributed among these distances:
39 19 0.11
40 150 0.88
41 2 0.01
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:37909228 original size:45 final size:45
Alignment explanation
Indices: 37909164--37909476 Score: 217
Period size: 45 Copynumber: 6.7 Consensus size: 45
37909154 GAGTTAAGCT
* *
37909164 AGTGTAAGA-CATGTTTGGGACATGCATCAGTTATGAGACATGTC
1 AGTGTAAGACCATGTCTGGGACATGCATCGGTTATGAGACATGTC
* *
37909208 AGTGTAAGACCATGTCTGGGACATGCATCGGCTACGAGACATGTC
1 AGTGTAAGACCATGTCTGGGACATGCATCGGTTATGAGACATGTC
* ** * * *
37909253 AGTGTAAGACCATGTATGGGACATGACATC-GACATGGATACGCAAGAGC
1 AGTGTAAGACCATGTCTGGGACATG-CATCGGTTAT-GAGA--CATG-TC
* * * * *
37909302 TAGAGTAAGACCATGTCTCGGACATGGCATCGGCCTCGATGATGATA-GCC
1 -AGTGTAAGACCATGTCTGGGACAT-GCATCGG--T-TATGA-GACATGTC
* **
37909352 AGTGTAAGA-CATGTCTGGGACATGCATCGGCTA--AGAGTTGTGC
1 AGTGTAAGACCATGTCTGGGACATGCATCGGTTATGAGACATGT-C
* * *
37909395 TAGTGTAAGACCATGTCTGGGACATGGCATCAGCCTTGATGAG-GATAGCC
1 -AGTGTAAGACCATGTCTGGGACAT-GCATC-G-GTT-ATGAGACAT-GTC
37909445 AGTGTAAGACCATGTCTGGGACATGGCATCGG
1 AGTGTAAGACCATGTCTGGGACAT-GCATCGG
37909477 CAACTTAACC
Statistics
Matches: 214, Mismatches: 31, Indels: 45
0.74 0.11 0.16
Matches are distributed among these distances:
41 2 0.01
42 2 0.01
43 1 0.00
44 19 0.09
45 71 0.33
46 12 0.06
47 8 0.04
48 18 0.08
49 40 0.19
50 29 0.14
51 6 0.03
52 1 0.00
53 2 0.01
54 3 0.01
ACGTcount: A:0.28, C:0.19, G:0.30, T:0.23
Consensus pattern (45 bp):
AGTGTAAGACCATGTCTGGGACATGCATCGGTTATGAGACATGTC
Found at i:37909374 original size:143 final size:143
Alignment explanation
Indices: 37909207--37909477 Score: 363
Period size: 143 Copynumber: 1.9 Consensus size: 143
37909197 TGAGACATGT
37909207 CAGTGTAAGACCATGTCTGGGACATGCATCGGCTACGAGACATGT-C-AGTGTAAGACCATGTAT
1 CAGTGTAAGACCATGTCTGGGACATGCATCGGCTA--AGACATGTGCTAGTGTAAGACCATGTAT
*
37909270 GGGACATGACATC-GACATGGAT-ACGCAAGAGCTAGAGTAAGACCATGTCTCGGACATGGCATC
64 GGGACATGACATCAG-CATGGATGA-G-AAGAGCCAGAGTAAGACCATGTCTCGGACATGGCATC
37909333 GGCCTCGATGATGATAGC
126 GGCCTCGATGATGATAGC
** *
37909351 CAGTGTAAGA-CATGTCTGGGACATGCATCGGCTAAGAGTTGTGCTAGTGTAAGACCATGTCTGG
1 CAGTGTAAGACCATGTCTGGGACATGCATCGGCTAAGACATGTGCTAGTGTAAGACCATGTATGG
* * * * * * *
37909415 GACATGGCATCAGCCTTGATGAGGATAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGC
66 GACATGACATCAGCATGGATGAGAAGAGCCAGAGTAAGACCATGTCTCGGACATGGCATCGGC
37909478 AACTTAACCC
Statistics
Matches: 112, Mismatches: 11, Indels: 10
0.84 0.08 0.08
Matches are distributed among these distances:
141 6 0.05
142 36 0.32
143 58 0.52
144 12 0.11
ACGTcount: A:0.27, C:0.21, G:0.30, T:0.22
Consensus pattern (143 bp):
CAGTGTAAGACCATGTCTGGGACATGCATCGGCTAAGACATGTGCTAGTGTAAGACCATGTATGG
GACATGACATCAGCATGGATGAGAAGAGCCAGAGTAAGACCATGTCTCGGACATGGCATCGGCCT
CGATGATGATAGC
Found at i:37909402 original size:188 final size:186
Alignment explanation
Indices: 37909070--37909475 Score: 468
Period size: 188 Copynumber: 2.2 Consensus size: 186
37909060 TTCGTGTACA
* * * *
37909070 AGTGTAAGACCATGTTTGGGACATGGCATCGACATTGAGACGAGTGCCAGTGTAAGACATGTCCG
1 AGTGTAAGACCATGTATGGGACATGGCATCGACATGGAGACGAGAGCCAGAGTAAGACATGTCCG
* * * * *
37909135 GGACATGTATCGACCTCGAGAGTTAAGCTAGTGTAAGACATGTTTGGGACATGCATCAGTTATGA
66 GGACATGCATCGACCTCGAGAGATAAGCCAGTGTAAGACATGTCTGGGACATGCATCAGCTA-GA
* *
37909200 GACATGTCAGTGTAAGACCATGTCTGGGACAT-GCATC-GGCTACGA-GA-CAT-GTC
130 GACATGTCAGTGTAAGACCATGTCTGGGACATGGCATCAGCCT-CGATGAGCATAGCC
* * *
37909253 AGTGTAAGACCATGTATGGGACATGACATCGACATGGATACGCAAGAGCTAGAGTAAGACCATGT
1 AGTGTAAGACCATGTATGGGACATGGCATCGACATGGAGACG--AGAGCCAGAGTAAGA-CATGT
* *
37909318 CTC-GGACATGGCATCGGCCTCGATGATGAT-AGCCAGTGTAAGACATGTCTGGGACATGCATCG
63 C-CGGGACAT-GCATCGACCTCGA-GA-GATAAGCCAGTGTAAGACATGTCTGGGACATGCATCA
** * *
37909381 GCTA-AGAGTTGTGCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCCTTGATGAGGATAGCC
124 GCTAGAGACATGT-C-AGTGTAAGACCATGTCTGGGACATGGCATCAGCCTCGATGAGCATAGCC
*
37909445 AGTGTAAGACCATGTCTGGGACATGGCATCG
1 AGTGTAAGACCATGTATGGGACATGGCATCG
37909476 GCAACTTAAC
Statistics
Matches: 187, Mismatches: 22, Indels: 19
0.82 0.10 0.08
Matches are distributed among these distances:
183 38 0.20
185 12 0.06
186 18 0.10
187 13 0.07
188 59 0.32
189 9 0.05
190 5 0.03
191 2 0.01
192 31 0.17
ACGTcount: A:0.28, C:0.19, G:0.30, T:0.23
Consensus pattern (186 bp):
AGTGTAAGACCATGTATGGGACATGGCATCGACATGGAGACGAGAGCCAGAGTAAGACATGTCCG
GGACATGCATCGACCTCGAGAGATAAGCCAGTGTAAGACATGTCTGGGACATGCATCAGCTAGAG
ACATGTCAGTGTAAGACCATGTCTGGGACATGGCATCAGCCTCGATGAGCATAGCC
Found at i:37910426 original size:13 final size:13
Alignment explanation
Indices: 37910408--37910432 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
37910398 TGGGCGTGTG
37910408 AAAGGACACGGGA
1 AAAGGACACGGGA
37910421 AAAGGACACGGG
1 AAAGGACACGGG
37910433 CGTGTGTCCA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.44, C:0.16, G:0.40, T:0.00
Consensus pattern (13 bp):
AAAGGACACGGGA
Found at i:37911609 original size:49 final size:49
Alignment explanation
Indices: 37911432--37911843 Score: 633
Period size: 49 Copynumber: 8.6 Consensus size: 49
37911422 CCCTTCGGGA
* ** * * *
37911432 CTTATCACAT-T-TATACACTTTCACATCCATCATGTTGGCCACTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
37911479 CCTGTCACA-A-ATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
37911526 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
37911573 CTTATCACATATGTATACACTTTCACATTCCTCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
37911622 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
37911669 CTTATCACATGTATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
37911718 CTTATCACGTATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
37911767 CTTATCACATGTATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
37911816 CTTATCACATGTATATACACTTTCACAT
1 CTTATCACATATATATACACTTTCACAT
37911844 ATGGGTTTAA
Statistics
Matches: 337, Mismatches: 21, Indels: 12
0.91 0.06 0.03
Matches are distributed among these distances:
46 1 0.00
47 132 0.39
49 204 0.61
ACGTcount: A:0.28, C:0.29, G:0.09, T:0.33
Consensus pattern (49 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:37911776 original size:98 final size:96
Alignment explanation
Indices: 37911432--37911843 Score: 648
Period size: 96 Copynumber: 4.3 Consensus size: 96
37911422 CCCTTCGGGA
* * ** * * * * * *
37911432 CTTATCACATTTATACACTTTCACATCCATCATGTTGGCCACTCGGCCCTGTCACA--AATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATGTATATAC
37911495 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
* * *
37911526 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATGTATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATGTATATAC
*
37911591 ACTTTCACATTCCTCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
37911622 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATGTATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATGTATATAC
37911687 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
37911718 CTTATCACGTATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATGTATAT
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATGTATAT
37911783 ACACTTTCACATTCATCACATCGGCCATTAGGC
64 ACACTTTCACATTCATCACATCGGCCATTAGGC
37911816 CTTATCACATGTATATACACTTTCACAT
1 CTTATCACA--TATATACACTTTCACAT
37911844 ATGGGTTTAA
Statistics
Matches: 295, Mismatches: 17, Indels: 8
0.92 0.05 0.03
Matches are distributed among these distances:
94 46 0.16
96 136 0.46
98 113 0.38
ACGTcount: A:0.28, C:0.29, G:0.09, T:0.33
Consensus pattern (96 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATGTATATAC
ACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:37916089 original size:40 final size:40
Alignment explanation
Indices: 37915779--37916080 Score: 444
Period size: 40 Copynumber: 7.6 Consensus size: 40
37915769 CCAGCATGAT
* * * * *
37915779 TGCTCTTCGGGACCTAGCCCGGATATAACACCAGCACAAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* * * *
37915819 TGCTCTTCGGG-TTTAGCACGGATATATTACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* *
37915858 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
37915898 TGCTCTTCGAGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
37915938 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* *
37915978 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* *
37916018 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
37916058 TGCTCTTCGGGATTTAGCCCGGA
1 TGCTCTTCGGGACTTAGCCCGGA
37916081 CATTTCACTC
Statistics
Matches: 239, Mismatches: 22, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
39 31 0.13
40 208 0.87
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
Found at i:37917360 original size:36 final size:37
Alignment explanation
Indices: 37917288--37917365 Score: 122
Period size: 36 Copynumber: 2.1 Consensus size: 37
37917278 TTATTACGAA
* *
37917288 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCTCCACACGAAGTCATCGG
*
37917325 GTCTTACCCGGACAAAATC-CCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCTCCACACGAAGTCATCGG
37917361 GTCTT
1 GTCTT
37917366 TAGAGATCGG
Statistics
Matches: 38, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
36 20 0.53
37 18 0.47
ACGTcount: A:0.26, C:0.31, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCTCCACACGAAGTCATCGG
Found at i:37917661 original size:49 final size:49
Alignment explanation
Indices: 37917484--37917944 Score: 713
Period size: 49 Copynumber: 9.6 Consensus size: 49
37917474 CCCTTCGGGA
* * * * *
37917484 CTTATCACAT-T-TATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
37917531 CCTGTCACA-A-ATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
**
37917578 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCTGTTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
37917625 CTTATCACATATGTATACACTTTCACATTCCTCACATCGGCCATCAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
37917674 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
37917721 CTTATCACATGTATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
37917770 CTTATCACGTATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
37917819 CTTATCACATGTATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
37917868 CTTATCACATGTATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
37917917 CTTATCACATGTATATACACTTTCACAT
1 CTTATCACATATATATACACTTTCACAT
37917945 ATGGGTTTAA
Statistics
Matches: 383, Mismatches: 24, Indels: 12
0.91 0.06 0.03
Matches are distributed among these distances:
46 1 0.00
47 131 0.34
49 251 0.66
ACGTcount: A:0.28, C:0.30, G:0.10, T:0.32
Consensus pattern (49 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:37925681 original size:26 final size:26
Alignment explanation
Indices: 37925652--37925704 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
37925642 TACAATGAGC
37925652 AATGACAACCCAGACATTAAGAAAGG
1 AATGACAACCCAGACATTAAGAAAGG
37925678 AATGACAACCCAGACATTAAGAAAGG
1 AATGACAACCCAGACATTAAGAAAGG
37925704 A
1 A
37925705 TCATTCTCAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.51, C:0.19, G:0.19, T:0.11
Consensus pattern (26 bp):
AATGACAACCCAGACATTAAGAAAGG
Found at i:37926128 original size:96 final size:96
Alignment explanation
Indices: 37925945--37926129 Score: 205
Period size: 96 Copynumber: 1.9 Consensus size: 96
37925935 GTTACAAGTT
* *
37925945 TTATCTCCCTGAAATTGCAGTGGAACAGACTGAAGATAGCAAATCTTATCTCCCTGAAGTTACAG
1 TTATCTCCCTGAAATTGCAATGGAACAGACTGAAGATAGCAAATCGTATCTCCCTGAAGTTACAG
* * *
37926010 TGGAGCTGATTAAAGCTACAAATCACAAACC
66 TAGAGCTGATCAAAGATACAAATCACAAACC
* ** ** * *
37926041 TTATCTCCCTGAAGTTGCAATGGAGTAGGTTGAAGATA-CAAGTCGTATCTCCCT-AAGGTTATA
1 TTATCTCCCTGAAATTGCAATGGAACAGACTGAAGATAGCAAATCGTATCTCCCTGAA-GTTACA
*
37926104 GTAGAGCAT-ATCGAAGATAGCAAATC
65 GTAGAGC-TGATCAAAGATA-CAAATC
37926130 TTATTTCCTC
Statistics
Matches: 73, Mismatches: 13, Indels: 6
0.79 0.14 0.07
Matches are distributed among these distances:
94 2 0.03
95 32 0.44
96 39 0.53
ACGTcount: A:0.34, C:0.19, G:0.20, T:0.26
Consensus pattern (96 bp):
TTATCTCCCTGAAATTGCAATGGAACAGACTGAAGATAGCAAATCGTATCTCCCTGAAGTTACAG
TAGAGCTGATCAAAGATACAAATCACAAACC
Found at i:37926133 original size:140 final size:139
Alignment explanation
Indices: 37925845--37926133 Score: 330
Period size: 140 Copynumber: 2.1 Consensus size: 139
37925835 TCACGAATCA
** * * * *
37925845 CAAATCTTATCTCCCTGAAGTTGTAGTGGAGCAGATTGAAGCTATAAATCACAAACTTATATTCT
1 CAAATCTTATCTCCCTGAAGTTACAGTGGAGCAGATTAAAGCTACAAATCACAAACTTATATCCC
* * * * ** * *
37925910 TGAAGTTGTAGTGGAACAAGTTGTAGTTACAAGTTTTATCTCCCTGAAATTGCAGTGGAACAGAC
66 TGAAGTTGCAATGGAACAAGTTGAAGATACAAGTCGTATCTCCCTGAAATTACAGTAGAACAGAC
37925975 TGAAGATAG
131 TGAAGATAG
* *
37925984 CAAATCTTATCTCCCTGAAGTTACAGTGGAGCTGATTAAAGCTACAAATCACAAACCTTATCTCC
1 CAAATCTTATCTCCCTGAAGTTACAGTGGAGCAGATTAAAGCTACAAATCACAAA-CTTATATCC
** * * * * *
37926049 CTGAAGTTGCAATGGAGTAGGTTGAAGATACAAGTCGTATCTCCCT-AAGGTTATAGTAGAGCAT
65 CTGAAGTTGCAATGGAACAAGTTGAAGATACAAGTCGTATCTCCCTGAA-ATTACAGTAGAACAG
37926113 A-TCGAAGATAG
129 ACT-GAAGATAG
37926124 CAAATCTTAT
1 CAAATCTTAT
37926134 TTCCTCGAAA
Statistics
Matches: 124, Mismatches: 23, Indels: 5
0.82 0.15 0.03
Matches are distributed among these distances:
139 53 0.43
140 71 0.57
ACGTcount: A:0.34, C:0.17, G:0.20, T:0.29
Consensus pattern (139 bp):
CAAATCTTATCTCCCTGAAGTTACAGTGGAGCAGATTAAAGCTACAAATCACAAACTTATATCCC
TGAAGTTGCAATGGAACAAGTTGAAGATACAAGTCGTATCTCCCTGAAATTACAGTAGAACAGAC
TGAAGATAG
Found at i:37927823 original size:3 final size:3
Alignment explanation
Indices: 37927811--37927843 Score: 59
Period size: 3 Copynumber: 11.3 Consensus size: 3
37927801 TTTTTTATGC
37927811 TTA TTA -TA TTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
37927844 ATTTCCAGAT
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
2 2 0.07
3 27 0.93
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:37927891 original size:15 final size:15
Alignment explanation
Indices: 37927871--37927899 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
37927861 ACTCAAATAC
37927871 TTTTATTTATCTATG
1 TTTTATTTATCTATG
37927886 TTTTATTTATCTAT
1 TTTTATTTATCTAT
37927900 TTATATTTCT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.21, C:0.07, G:0.03, T:0.69
Consensus pattern (15 bp):
TTTTATTTATCTATG
Found at i:37927978 original size:3 final size:3
Alignment explanation
Indices: 37927950--37928095 Score: 64
Period size: 3 Copynumber: 46.3 Consensus size: 3
37927940 CTATTTCTAT
* * * *
37927950 TTA TGTA TTA ATA TCA TTA TTTA TTA TTA TTT TTA TAAA TTA GTT- TTA
1 TTA T-TA TTA TTA TTA TTA -TTA TTA TTA TTA TTA T-TA TTA -TTA TTA
* * * * *
37927998 TTA TCT- TTA TTA TTA CTA TTA GTA CTA TTA TTA TTT TCTA TCA TTA
1 TTA T-TA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T-TA TTA TTA
* * **
37928044 TTA TTA CCTTT TTA CTA TTA TTA TT- TCGTA CCA TTA TTA TTA TTA TTA
1 TTA TTA --TTA TTA TTA TTA TTA TTA T--TA TTA TTA TTA TTA TTA TTA
37928092 TTA T
1 TTA T
37928096 CTATAGTATA
Statistics
Matches: 105, Mismatches: 25, Indels: 26
0.67 0.16 0.17
Matches are distributed among these distances:
2 4 0.04
3 85 0.81
4 14 0.13
5 2 0.02
ACGTcount: A:0.29, C:0.08, G:0.03, T:0.60
Consensus pattern (3 bp):
TTA
Found at i:37928153 original size:64 final size:64
Alignment explanation
Indices: 37928078--37928204 Score: 245
Period size: 64 Copynumber: 2.0 Consensus size: 64
37928068 TTCGTACCAT
*
37928078 TATTATTATTATTATTATCTATAGTATATTTATTCATAAATTGCTCCCTTAATTTTATTTACAA
1 TATTATTATTATTATAATCTATAGTATATTTATTCATAAATTGCTCCCTTAATTTTATTTACAA
37928142 TATTATTATTATTATAATCTATAGTATATTTATTCATAAATTGCTCCCTTAATTTTATTTACA
1 TATTATTATTATTATAATCTATAGTATATTTATTCATAAATTGCTCCCTTAATTTTATTTACA
37928205 TTTTAGTTTG
Statistics
Matches: 62, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
64 62 1.00
ACGTcount: A:0.33, C:0.11, G:0.03, T:0.53
Consensus pattern (64 bp):
TATTATTATTATTATAATCTATAGTATATTTATTCATAAATTGCTCCCTTAATTTTATTTACAA
Found at i:37932558 original size:27 final size:27
Alignment explanation
Indices: 37932507--37932665 Score: 166
Period size: 27 Copynumber: 5.9 Consensus size: 27
37932497 GCGAGGCTGC
* *
37932507 CAGATATTGTGAC-GAAGTCACCAGATA
1 CAGATATTGTGGCAG-AGCCACCAGATA
* * *
37932534 TAGATATTGTGGTAGAGCCATCAGA-A
1 CAGATATTGTGGCAGAGCCACCAGATA
37932560 CAGATATATGTGGCAGAGCCACCAGAT-
1 CAGATAT-TGTGGCAGAGCCACCAGATA
* *
37932587 CAGATAATTGTGGCATAGCCACCAG-GA
1 CAGAT-ATTGTGGCAGAGCCACCAGATA
37932614 CAGATATATGTGGCAGAGCCACCAGAT-
1 CAGATAT-TGTGGCAGAGCCACCAGATA
*
37932641 CAGATAATTGTGGCATAGCCACCAG
1 CAGAT-ATTGTGGCAGAGCCACCAG
37932666 GACGTTTCCT
Statistics
Matches: 111, Mismatches: 13, Indels: 16
0.79 0.09 0.11
Matches are distributed among these distances:
26 9 0.08
27 97 0.87
28 5 0.05
ACGTcount: A:0.34, C:0.20, G:0.25, T:0.21
Consensus pattern (27 bp):
CAGATATTGTGGCAGAGCCACCAGATA
Found at i:37932666 original size:54 final size:54
Alignment explanation
Indices: 37932525--37932668 Score: 227
Period size: 54 Copynumber: 2.7 Consensus size: 54
37932515 GTGACGAAGT
* * * * *
37932525 CACCAGATATAGAT-ATTGTGGTAGAGCCATCAGAACAGATATATGTGGCAGAGC
1 CACCAGAT-CAGATAATTGTGGCATAGCCACCAGGACAGATATATGTGGCAGAGC
37932579 CACCAGATCAGATAATTGTGGCATAGCCACCAGGACAGATATATGTGGCAGAGC
1 CACCAGATCAGATAATTGTGGCATAGCCACCAGGACAGATATATGTGGCAGAGC
37932633 CACCAGATCAGATAATTGTGGCATAGCCACCAGGAC
1 CACCAGATCAGATAATTGTGGCATAGCCACCAGGAC
37932669 GTTTCCTCCA
Statistics
Matches: 84, Mismatches: 5, Indels: 2
0.92 0.05 0.02
Matches are distributed among these distances:
53 4 0.05
54 80 0.95
ACGTcount: A:0.34, C:0.22, G:0.25, T:0.19
Consensus pattern (54 bp):
CACCAGATCAGATAATTGTGGCATAGCCACCAGGACAGATATATGTGGCAGAGC
Found at i:37940656 original size:27 final size:27
Alignment explanation
Indices: 37940605--37940763 Score: 148
Period size: 27 Copynumber: 5.9 Consensus size: 27
37940595 GCGAGGCTGC
* *
37940605 CAGATATTGTGAC-GAAGTCACCAGATA
1 CAGATATTGTGGCAG-AGCCACCAGATA
*
37940632 CAGATATTGTGGCAGAGCCATCAGA-A
1 CAGATATTGTGGCAGAGCCACCAGATA
* *
37940658 AAGATATATGTAGCAGAGCCACCAGAT-
1 CAGATAT-TGTGGCAGAGCCACCAGATA
* * *
37940685 CAGATAATTATGGCATAGCCACCAG-GA
1 CAGAT-ATTGTGGCAGAGCCACCAGATA
37940712 CAGATATATGTGGCAGAGCCACCAGAT-
1 CAGATAT-TGTGGCAGAGCCACCAGATA
* *
37940739 TAGATAATTGTGGCATAGCCACCAG
1 CAGAT-ATTGTGGCAGAGCCACCAG
37940764 GACGCTTCCT
Statistics
Matches: 108, Mismatches: 16, Indels: 16
0.77 0.11 0.11
Matches are distributed among these distances:
26 9 0.08
27 94 0.87
28 5 0.05
ACGTcount: A:0.36, C:0.20, G:0.24, T:0.20
Consensus pattern (27 bp):
CAGATATTGTGGCAGAGCCACCAGATA
Found at i:37940764 original size:54 final size:54
Alignment explanation
Indices: 37940623--37940766 Score: 209
Period size: 54 Copynumber: 2.7 Consensus size: 54
37940613 GTGACGAAGT
* * * *
37940623 CACCAGATACAGAT-ATTGTGGCAGAGCCATCAGAAAAGATATATGTAGCAGAGC
1 CACCAGAT-CAGATAATTGTGGCATAGCCACCAGGACAGATATATGTAGCAGAGC
* *
37940677 CACCAGATCAGATAATTATGGCATAGCCACCAGGACAGATATATGTGGCAGAGC
1 CACCAGATCAGATAATTGTGGCATAGCCACCAGGACAGATATATGTAGCAGAGC
*
37940731 CACCAGATTAGATAATTGTGGCATAGCCACCAGGAC
1 CACCAGATCAGATAATTGTGGCATAGCCACCAGGAC
37940767 GCTTCCTCCA
Statistics
Matches: 81, Mismatches: 8, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
53 5 0.06
54 76 0.94
ACGTcount: A:0.36, C:0.22, G:0.24, T:0.19
Consensus pattern (54 bp):
CACCAGATCAGATAATTGTGGCATAGCCACCAGGACAGATATATGTAGCAGAGC
Found at i:37944093 original size:46 final size:47
Alignment explanation
Indices: 37944025--37944145 Score: 149
Period size: 46 Copynumber: 2.6 Consensus size: 47
37944015 TATGTGTGCT
* **
37944025 AGTGTAAGACATGTTTGAGACATGCATCGACCACAT-A-TTGAGAGCC
1 AGTGTAAGACATGTTTGGGACATGCATCGACCA-ATAAGACGAGAGCC
* * * *
37944071 AGTGTAAGACATGTCTGGGACATGCATC-AGCATTAAGACGAGAGCT
1 AGTGTAAGACATGTTTGGGACATGCATCGACCAATAAGACGAGAGCC
37944117 AGTGTAAGACATGTTTGGGACATGCATCG
1 AGTGTAAGACATGTTTGGGACATGCATCG
37944146 GCCTCGAGAT
Statistics
Matches: 64, Mismatches: 8, Indels: 5
0.83 0.10 0.06
Matches are distributed among these distances:
44 1 0.02
45 4 0.06
46 59 0.92
ACGTcount: A:0.31, C:0.17, G:0.27, T:0.24
Consensus pattern (47 bp):
AGTGTAAGACATGTTTGGGACATGCATCGACCAATAAGACGAGAGCC
Found at i:37944258 original size:49 final size:48
Alignment explanation
Indices: 37944197--37944366 Score: 198
Period size: 49 Copynumber: 3.5 Consensus size: 48
37944187 TATTGTGTGT
*
37944197 CAGTGTAAGACCTGTCTGGGACATGGCATCGACATCGATAGATGAGAGC
1 CAGTGTAAGACCTGTCTGGGACATGGCATCGACATCGATA-ATGAAAGC
* * * * * *
37944246 CAGTGTAAGACCTATCTGGGACACGACATCGGCCTCGATATATGAAAGT
1 CAGTGTAAGACCTGTCTGGGACATGGCATCGACATCGATA-ATGAAAGC
* * * **
37944295 CAGTGTAAGACCTGTCTGGGACATGGCATCTACTTTGAT-ATGCTAGC
1 CAGTGTAAGACCTGTCTGGGACATGGCATCGACATCGATAATGAAAGC
37944342 CAGTGTAAGACCATGTCTGGGACAT
1 CAGTGTAAGACC-TGTCTGGGACAT
37944367 AGAGTCGGCA
Statistics
Matches: 102, Mismatches: 18, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
47 17 0.17
48 12 0.12
49 73 0.72
ACGTcount: A:0.28, C:0.21, G:0.27, T:0.24
Consensus pattern (48 bp):
CAGTGTAAGACCTGTCTGGGACATGGCATCGACATCGATAATGAAAGC
Found at i:37953414 original size:40 final size:40
Alignment explanation
Indices: 37953363--37953456 Score: 109
Period size: 40 Copynumber: 2.4 Consensus size: 40
37953353 CTTAGTATCA
* * * * *
37953363 CACACTTAGTGCCACATATAGTCGACGCTAT-TCTAACTCG
1 CACACTAAGTGCCACATATAGCCGAAGCTATCTCGAA-ACG
* *
37953403 CACACTAAGTGCTATATATAGCCGAAGCTATCTCGAAACG
1 CACACTAAGTGCCACATATAGCCGAAGCTATCTCGAAACG
37953443 CACACTAAGTGCCA
1 CACACTAAGTGCCA
37953457 AACTTAGTCT
Statistics
Matches: 45, Mismatches: 8, Indels: 2
0.82 0.15 0.04
Matches are distributed among these distances:
40 41 0.91
41 4 0.09
ACGTcount: A:0.32, C:0.29, G:0.16, T:0.23
Consensus pattern (40 bp):
CACACTAAGTGCCACATATAGCCGAAGCTATCTCGAAACG
Found at i:37958237 original size:24 final size:24
Alignment explanation
Indices: 37958210--37958266 Score: 96
Period size: 24 Copynumber: 2.4 Consensus size: 24
37958200 TCTATATTTG
*
37958210 CATCTGTGTTTGTATCTGCATCTA
1 CATCTGTGTTAGTATCTGCATCTA
*
37958234 CATCTGTGTTAGTATCTGTATCTA
1 CATCTGTGTTAGTATCTGCATCTA
37958258 CATCTGTGT
1 CATCTGTGT
37958267 CTATATCAGA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
24 31 1.00
ACGTcount: A:0.18, C:0.19, G:0.18, T:0.46
Consensus pattern (24 bp):
CATCTGTGTTAGTATCTGCATCTA
Found at i:37958273 original size:24 final size:23
Alignment explanation
Indices: 37958210--37958273 Score: 83
Period size: 24 Copynumber: 2.7 Consensus size: 23
37958200 TCTATATTTG
*
37958210 CATCTGTGTTTGTATCTGCATCTA
1 CATCTGTG-TTATATCTGCATCTA
*
37958234 CATCTGTGTTAGTATCTGTATCTA
1 CATCTGTGTTA-TATCTGCATCTA
37958258 CATCTGTGTCTATATC
1 CATCTGTGT-TATATC
37958274 AGAATTTGCA
Statistics
Matches: 36, Mismatches: 2, Indels: 4
0.86 0.05 0.10
Matches are distributed among these distances:
23 2 0.06
24 32 0.89
25 2 0.06
ACGTcount: A:0.19, C:0.20, G:0.16, T:0.45
Consensus pattern (23 bp):
CATCTGTGTTATATCTGCATCTA
Found at i:37965447 original size:23 final size:23
Alignment explanation
Indices: 37965421--37965687 Score: 253
Period size: 23 Copynumber: 11.7 Consensus size: 23
37965411 AAAAGTGCCA
* * *
37965421 CACTGTAATATAGCTGAAGCTAT
1 CACTGTAATGTAGCCGAAGCTAC
37965444 CACTGTAATGTAGCCGAAGCTAC
1 CACTGTAATGTAGCCGAAGCTAC
*
37965467 CACTGTATTGTAGCCGAAGCTAC
1 CACTGTAATGTAGCCGAAGCTAC
37965490 CACTG-AGATG-AGCCGAAGCTAC
1 CACTGTA-ATGTAGCCGAAGCTAC
* *
37965512 CACTGTATTGTAGCTTTG-A-CTAC
1 CACTGTAATGTAGC--CGAAGCTAC
*
37965535 CACTG-AGATGTAGCCAAAGCTAC
1 CACTGTA-ATGTAGCCGAAGCTAC
* * *
37965558 CACTGTATTGTAGCCAAAGCTGC
1 CACTGTAATGTAGCCGAAGCTAC
*
37965581 CACTG-AGATGTAGCAGAAGCTAC
1 CACTGTA-ATGTAGCCGAAGCTAC
* * *
37965604 CACTATATTGTAGCCAAAGCTAC
1 CACTGTAATGTAGCCGAAGCTAC
*
37965627 CACTG-AGATGTAGCCAAAGCTAC
1 CACTGTA-ATGTAGCCGAAGCTAC
* **
37965650 CACTATTTTGTAGCCGAAGCTAC
1 CACTGTAATGTAGCCGAAGCTAC
37965673 CACTG-AGATGTAGCC
1 CACTGTA-ATGTAGCC
37965688 TATAGATTCC
Statistics
Matches: 201, Mismatches: 29, Indels: 28
0.78 0.11 0.11
Matches are distributed among these distances:
22 24 0.12
23 173 0.86
24 3 0.01
25 1 0.00
ACGTcount: A:0.30, C:0.25, G:0.21, T:0.24
Consensus pattern (23 bp):
CACTGTAATGTAGCCGAAGCTAC
Found at i:37965488 original size:46 final size:46
Alignment explanation
Indices: 37965421--37965687 Score: 353
Period size: 46 Copynumber: 5.8 Consensus size: 46
37965411 AAAAGTGCCA
* * * *
37965421 CACTGTAATATAGCTGAAGCTATCACTGTA-ATGTAGCCGAAGCTAC
1 CACTGTATTGTAGCCGAAGCTACCACTG-AGATGTAGCCGAAGCTAC
37965467 CACTGTATTGTAGCCGAAGCTACCACTGAGATG-AGCCGAAGCTAC
1 CACTGTATTGTAGCCGAAGCTACCACTGAGATGTAGCCGAAGCTAC
* *
37965512 CACTGTATTGTAGCTTTG-A-CTACCACTGAGATGTAGCCAAAGCTAC
1 CACTGTATTGTAGC--CGAAGCTACCACTGAGATGTAGCCGAAGCTAC
* * *
37965558 CACTGTATTGTAGCCAAAGCTGCCACTGAGATGTAGCAGAAGCTAC
1 CACTGTATTGTAGCCGAAGCTACCACTGAGATGTAGCCGAAGCTAC
* * *
37965604 CACTATATTGTAGCCAAAGCTACCACTGAGATGTAGCCAAAGCTAC
1 CACTGTATTGTAGCCGAAGCTACCACTGAGATGTAGCCGAAGCTAC
* *
37965650 CACTATTTTGTAGCCGAAGCTACCACTGAGATGTAGCC
1 CACTGTATTGTAGCCGAAGCTACCACTGAGATGTAGCC
37965688 TATAGATTCC
Statistics
Matches: 198, Mismatches: 17, Indels: 12
0.87 0.07 0.05
Matches are distributed among these distances:
45 42 0.21
46 155 0.78
47 1 0.01
ACGTcount: A:0.30, C:0.25, G:0.21, T:0.24
Consensus pattern (46 bp):
CACTGTATTGTAGCCGAAGCTACCACTGAGATGTAGCCGAAGCTAC
Found at i:37969635 original size:40 final size:40
Alignment explanation
Indices: 37969572--37969774 Score: 282
Period size: 40 Copynumber: 5.1 Consensus size: 40
37969562 CGGGCTTTAA
** * **
37969572 CCGGATATAGCCACTCGCTCAAATGCCTTTAGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
** *
37969612 CCGGATATAGTAGTTCGCACAAATGCCTTCGGGACTTAGT
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
37969652 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
37969692 CCGGATATAGTAACTCGCACAAATGCCTCCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
37969732 CCGGA-ATTAGTCACTAGCATAAATGCCTTCGGGACTTAGC
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGACTTAGC
37969772 CCG
1 CCG
37969775 AAATTATCAT
Statistics
Matches: 146, Mismatches: 16, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
39 1 0.01
40 145 0.99
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:37974793 original size:46 final size:44
Alignment explanation
Indices: 37974736--37974907 Score: 143
Period size: 46 Copynumber: 3.7 Consensus size: 44
37974726 CCACTTGTGT
*
37974736 GAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCACATTATGA
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATCGG-CACATTA-GA
* * * * *
37974782 GAGCCAGTGTAAGACCATGTTTAGGACAGGGCATCGGCATA-GAGA
1 GAGCCAGTGTAAGA-CATGTCTGGGACA-TGCATCGGCACATTAGA
**
37974827 CGAGTGTTAGTGTAAGACATGTCTGGGACATGCATCGGC-C-TTGAGA
1 -GA--GCCAGTGTAAGACATGTCTGGGACATGCATCGGCACATT-AGA
*
37974873 CGTAAGCCAATGTAAGACATGTCTGGGACATGCAT
1 -G--AGCCAGTGTAAGACATGTCTGGGACATGCAT
37974908 TGGCTAAGCG
Statistics
Matches: 101, Mismatches: 16, Indels: 18
0.75 0.12 0.13
Matches are distributed among these distances:
45 2 0.02
46 56 0.55
47 25 0.25
48 18 0.18
ACGTcount: A:0.28, C:0.19, G:0.30, T:0.23
Consensus pattern (44 bp):
GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCACATTAGA
Found at i:37977494 original size:39 final size:40
Alignment explanation
Indices: 37977450--37977655 Score: 296
Period size: 39 Copynumber: 5.2 Consensus size: 40
37977440 CCTTCGGAGT
* *
37977450 TTAG-CCGGATATAGCT-ACTAGCTCAAATGCCTTCGGGAC
1 TTAGCCCGGATATAG-TAACTCGCACAAATGCCTTCGGGAC
* *
37977489 TTAGCCCAGTTATAGTAACTCGCACAAATGCCTTCGGGAC
1 TTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGAC
*
37977529 TTAGCCC-GTTATAGTAACTCGCACAAATGCCTTCGGGAC
1 TTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGAC
37977568 TTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGG-C
1 TTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGAC
* *
37977607 TTAGCCCGGA-ATTAGTCACTAGCACAAATGCCTTCGGGAC
1 TTAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGGGAC
37977647 TTAGCCCGG
1 TTAGCCCGG
37977656 TTATCAATCC
Statistics
Matches: 155, Mismatches: 7, Indels: 9
0.91 0.04 0.05
Matches are distributed among these distances:
38 1 0.01
39 79 0.51
40 75 0.48
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
TTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGAC
Found at i:37977571 original size:79 final size:79
Alignment explanation
Indices: 37977466--37977659 Score: 309
Period size: 79 Copynumber: 2.5 Consensus size: 79
37977456 GGATATAGCT
* *
37977466 ACTAGCTCAAATGCCTTCGGGACTTAGCCCAGTTATAGTAACTCGCACAAATGCCTTCGGGACTT
1 ACTAGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGG-CTT
**
37977531 AGCCCGTTA-TAGTA
65 AGCCCGGAATTAGTA
* *
37977545 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGCTTA
1 ACTAGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGCTTA
*
37977610 GCCCGGAATTAGTC
66 GCCCGGAATTAGTA
37977624 ACTAGCACAAATGCCTTCGGGACTTAGCCCGGTTAT
1 ACTAGCACAAATGCCTTCGGGACTTAGCCCGGTTAT
37977660 CAATCCGAAT
Statistics
Matches: 105, Mismatches: 9, Indels: 2
0.91 0.08 0.02
Matches are distributed among these distances:
78 10 0.10
79 95 0.90
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (79 bp):
ACTAGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGCTTA
GCCCGGAATTAGTA
Found at i:37980069 original size:27 final size:27
Alignment explanation
Indices: 37980038--37980089 Score: 70
Period size: 27 Copynumber: 1.9 Consensus size: 27
37980028 CATCTGATAT
*
37980038 TGATTCT-GTATTGGGCTTAGGCCCACC
1 TGATTCTAGTAATGGGC-TAGGCCCACC
*
37980065 TGATTCTATTAATGGGCTAGGCCCA
1 TGATTCTAGTAATGGGCTAGGCCCA
37980090 ACTGTTATTG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
27 15 0.68
28 7 0.32
ACGTcount: A:0.19, C:0.23, G:0.25, T:0.33
Consensus pattern (27 bp):
TGATTCTAGTAATGGGCTAGGCCCACC
Found at i:37983721 original size:40 final size:40
Alignment explanation
Indices: 37983677--37983878 Score: 284
Period size: 40 Copynumber: 5.0 Consensus size: 40
37983667 AGATTTTGCT
*
37983677 GGATATAGCT-ACTAGCTCAAATGCCTTCGGGACTTAGCCC
1 GGATATAG-TAACTAGCACAAATGCCTTCGGGACTTAGCCC
* *
37983717 GGATATAGTAACTCA-CAAAAATGCCTTCGGGACCTAGCCC
1 GGATATAGTAACT-AGCACAAATGCCTTCGGGACTTAGCCC
*
37983757 GGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCC
1 GGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCC
*
37983797 GGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCC
1 GGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCC
* * *
37983837 GGA-ATTAGTCACTAGCACAAAGGCCTTCGGGACCTAGCCC
1 GGATA-TAGTAACTAGCACAAATGCCTTCGGGACTTAGCCC
37983877 GG
1 GG
37983879 TTATCATCCG
Statistics
Matches: 148, Mismatches: 10, Indels: 8
0.89 0.06 0.05
Matches are distributed among these distances:
39 2 0.01
40 145 0.98
41 1 0.01
ACGTcount: A:0.28, C:0.28, G:0.23, T:0.21
Consensus pattern (40 bp):
GGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCC
Found at i:37986617 original size:30 final size:32
Alignment explanation
Indices: 37986577--37986636 Score: 88
Period size: 31 Copynumber: 1.9 Consensus size: 32
37986567 TCATGCTCAA
37986577 CTTTTACTTTTTAGAC-TTTGAACAAACTTTT
1 CTTTTACTTTTTAGACTTTTGAACAAACTTTT
**
37986608 CTTTT-CTTTTTATTCTTTTGAACAAACTT
1 CTTTTACTTTTTAGACTTTTGAACAAACTT
37986637 ACCATTTTTC
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
30 8 0.31
31 18 0.69
ACGTcount: A:0.23, C:0.17, G:0.05, T:0.55
Consensus pattern (32 bp):
CTTTTACTTTTTAGACTTTTGAACAAACTTTT
Found at i:37987316 original size:31 final size:32
Alignment explanation
Indices: 37987281--37987343 Score: 101
Period size: 32 Copynumber: 2.0 Consensus size: 32
37987271 TTGAACACCA
* *
37987281 GGTAGGGTTGTAATT-AAGAGAGGTGAGTCTT
1 GGTAGGGCTGTAATTAAAGAGAGGTAAGTCTT
37987312 GGTAGGGCTGTAATTAAAGAGAGGTAAGTCTT
1 GGTAGGGCTGTAATTAAAGAGAGGTAAGTCTT
37987344 AGAGACTGCT
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
31 14 0.48
32 15 0.52
ACGTcount: A:0.29, C:0.05, G:0.37, T:0.30
Consensus pattern (32 bp):
GGTAGGGCTGTAATTAAAGAGAGGTAAGTCTT
Found at i:37991567 original size:32 final size:32
Alignment explanation
Indices: 37991529--37991593 Score: 130
Period size: 32 Copynumber: 2.0 Consensus size: 32
37991519 AAAATCTGTG
37991529 ATAAATCTATGATAACAACCAGCATGCCCTAA
1 ATAAATCTATGATAACAACCAGCATGCCCTAA
37991561 ATAAATCTATGATAACAACCAGCATGCCCTAA
1 ATAAATCTATGATAACAACCAGCATGCCCTAA
37991593 A
1 A
37991594 AAACTTCTAA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.45, C:0.25, G:0.09, T:0.22
Consensus pattern (32 bp):
ATAAATCTATGATAACAACCAGCATGCCCTAA
Found at i:38002819 original size:58 final size:61
Alignment explanation
Indices: 38002757--38002882 Score: 161
Period size: 61 Copynumber: 2.1 Consensus size: 61
38002747 ATCACTTTAA
* * *
38002757 TATTAAATTAATATAATACTTATC-A-AA-ATAAATATTAGATTAAATTTAATATT-AAAT
1 TATTAAATTAATAGAATACTTATCTATAAGAAAAATATTAAATTAAATTTAATATTAAAAT
* * *
38002814 CTATTAAATTAATAGAATATTTATCTATAAGAAAAATATTAAATTAATTTTTATATTAAAAT
1 -TATTAAATTAATAGAATACTTATCTATAAGAAAAATATTAAATTAAATTTAATATTAAAAT
38002876 TATTAAA
1 TATTAAA
38002883 ATATTATTAT
Statistics
Matches: 58, Mismatches: 6, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
58 22 0.38
59 1 0.02
60 2 0.03
61 29 0.50
62 4 0.07
ACGTcount: A:0.52, C:0.03, G:0.02, T:0.43
Consensus pattern (61 bp):
TATTAAATTAATAGAATACTTATCTATAAGAAAAATATTAAATTAAATTTAATATTAAAAT
Found at i:38005221 original size:35 final size:35
Alignment explanation
Indices: 38005173--38005277 Score: 120
Period size: 35 Copynumber: 3.0 Consensus size: 35
38005163 GAGCGGTATT
* *
38005173 GTGTAAACGATATACAAGTCCTACGAGGTGACACC
1 GTGTAAACAATATACAAGTCCTACAAGGTGACACC
* *
38005208 GTGTAAACAATATACAAGTCCTACAAGGTGATACT
1 GTGTAAACAATATACAAGTCCTACAAGGTGACACC
*** * * *
38005243 GTGTAAATGGTATACATGTCCTTCAGGGTGACACC
1 GTGTAAACAATATACAAGTCCTACAAGGTGACACC
38005278 TTAAAAGGAG
Statistics
Matches: 58, Mismatches: 12, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
35 58 1.00
ACGTcount: A:0.33, C:0.20, G:0.22, T:0.25
Consensus pattern (35 bp):
GTGTAAACAATATACAAGTCCTACAAGGTGACACC
Found at i:38020691 original size:28 final size:27
Alignment explanation
Indices: 38020624--38020684 Score: 85
Period size: 27 Copynumber: 2.4 Consensus size: 27
38020614 TGCGTAAGCA
38020624 TGATGTTTTCAG---AAAAACATTTGT
1 TGATGTTTTCAGAAAAAAAACATTTGT
38020648 TGATGTTTTCAGAAAAAAAACATTTGTT
1 TGATGTTTTCAGAAAAAAAACATTTG-T
38020676 TG-TGTTTTC
1 TGATGTTTTC
38020685 TTGAAAATAT
Statistics
Matches: 33, Mismatches: 0, Indels: 5
0.87 0.00 0.13
Matches are distributed among these distances:
24 12 0.36
27 18 0.55
28 3 0.09
ACGTcount: A:0.31, C:0.08, G:0.16, T:0.44
Consensus pattern (27 bp):
TGATGTTTTCAGAAAAAAAACATTTGT
Found at i:38023984 original size:20 final size:20
Alignment explanation
Indices: 38023959--38023997 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
38023949 TGTATCCATA
38023959 AAATTTCAAAATTTTTCATC
1 AAATTTCAAAATTTTTCATC
* *
38023979 AAATTTTACAATTTTTCAT
1 AAATTTCAAAATTTTTCAT
38023998 TTTAGTCTCT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.38, C:0.13, G:0.00, T:0.49
Consensus pattern (20 bp):
AAATTTCAAAATTTTTCATC
Found at i:38028225 original size:17 final size:17
Alignment explanation
Indices: 38028195--38028227 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
38028185 ACCCAGTGAT
38028195 TTCGGTTTGAGGGAGAA
1 TTCGGTTTGAGGGAGAA
38028212 TTCGGCTTTG-GGGAGA
1 TTCGG-TTTGAGGGAGA
38028228 GCTTTAGTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.18, C:0.09, G:0.42, T:0.30
Consensus pattern (17 bp):
TTCGGTTTGAGGGAGAA
Found at i:38029358 original size:27 final size:27
Alignment explanation
Indices: 38029321--38029615 Score: 297
Period size: 27 Copynumber: 10.9 Consensus size: 27
38029311 CGTTTTGGGA
* *
38029321 AAATACCCCCATTGGGTGAAATGACCG
1 AAATACCCCCATAGGGTAAAATGACCG
* *
38029348 AAATACCCCCATAGGGTAAAATAACCA
1 AAATACCCCCATAGGGTAAAATGACCG
* *
38029375 AAATACTCCCATCGGGTAAAATGACCG
1 AAATACCCCCATAGGGTAAAATGACCG
* *
38029402 AAATACCCCCATAGGGTAAAATGATCA
1 AAATACCCCCATAGGGTAAAATGACCG
* * *
38029429 AAATACCCTCATAGGGTAAAATAACAG
1 AAATACCCCCATAGGGTAAAATGACCG
* * *
38029456 AAATAACCCAATAGAGTAAAATGACCG
1 AAATACCCCCATAGGGTAAAATGACCG
*
38029483 AAATACCCCCATAGGGTAAAATGACTG
1 AAATACCCCCATAGGGTAAAATGACCG
*** *
38029510 AAATACCCTTGTAGGGTAAAATGA-CT
1 AAATACCCCCATAGGGTAAAATGACCG
* *
38029536 ATAATACCCCTATAGGGTAAAATGA-CT
1 A-AATACCCCCATAGGGTAAAATGACCG
** * *
38029563 ATAATACCCCTGTAAGGTAAAATGACTG
1 A-AATACCCCCATAGGGTAAAATGACCG
* ** *
38029591 TAATACCCCTGTAAGGTAAAATGAC
1 AAATACCCCCATAGGGTAAAATGAC
38029616 TGATTTGCCC
Statistics
Matches: 227, Mismatches: 39, Indels: 4
0.84 0.14 0.01
Matches are distributed among these distances:
26 1 0.00
27 226 1.00
ACGTcount: A:0.42, C:0.21, G:0.17, T:0.20
Consensus pattern (27 bp):
AAATACCCCCATAGGGTAAAATGACCG
Found at i:38047381 original size:49 final size:49
Alignment explanation
Indices: 38047328--38047436 Score: 121
Period size: 49 Copynumber: 2.2 Consensus size: 49
38047318 ACCTATTTGG
* *
38047328 GACATGGTATCGACAC-CGATAGATGAGAGCCAGTATAAGACTTGTCTGA
1 GACATGGCATCGAC-CTCGATAGATGAAAGCCAGTATAAGACTTGTCTGA
* * * * * *
38047377 GACATGGCATCGGCCTCGATATATTAAAGTCAGTGTAAGACTTGTCTGG
1 GACATGGCATCGACCTCGATAGATGAAAGCCAGTATAAGACTTGTCTGA
*
38047426 GACACGGCATC
1 GACATGGCATC
38047437 AGCTTTAATG
Statistics
Matches: 50, Mismatches: 9, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
48 1 0.02
49 49 0.98
ACGTcount: A:0.29, C:0.20, G:0.27, T:0.24
Consensus pattern (49 bp):
GACATGGCATCGACCTCGATAGATGAAAGCCAGTATAAGACTTGTCTGA
Found at i:38054347 original size:45 final size:45
Alignment explanation
Indices: 38054262--38054384 Score: 124
Period size: 45 Copynumber: 2.7 Consensus size: 45
38054252 CATCCATAAT
* * * *
38054262 GAACTCAGACCAACTCAACGAGCTCGGATGCTT-T-ATATATATCAC
1 GAACTCAGAACAACTCAACAAGCTCAGAT--TTCTCACATATATCAC
** * * *
38054307 GAACTTGGACCAACTCAACAAGTTCAGATTTCTCACATATATCAT
1 GAACTCAGAACAACTCAACAAGCTCAGATTTCTCACATATATCAC
*
38054352 GAACTCAGAACAACTCAACGAGCTCAGATTTCT
1 GAACTCAGAACAACTCAACAAGCTCAGATTTCT
38054385 AAATTCCTAG
Statistics
Matches: 64, Mismatches: 12, Indels: 4
0.80 0.15 0.05
Matches are distributed among these distances:
43 2 0.03
44 1 0.02
45 61 0.95
ACGTcount: A:0.35, C:0.26, G:0.14, T:0.25
Consensus pattern (45 bp):
GAACTCAGAACAACTCAACAAGCTCAGATTTCTCACATATATCAC
Found at i:38061157 original size:49 final size:49
Alignment explanation
Indices: 38061085--38061256 Score: 170
Period size: 49 Copynumber: 3.5 Consensus size: 49
38061075 CTTGTTGTGT
* *
38061085 CAGTGTAAGACCTGTTTGGGACATGGCATCGACAC-CAATAGATGAGAGC
1 CAGTGTAAGACCTGTCTGGGACATGGCATCGAC-CTCAATAGATGAAAGC
* * * * *
38061134 CAGTGTAAGACCTGTCTGGGACATGGTATCGGCCTCGATATATGAAAGT
1 CAGTGTAAGACCTGTCTGGGACATGGCATCGACCTCAATAGATGAAAGC
** * * * **
38061183 CAGTGTAAGACCTGTCTGGGACACAGCATCAACTTTAAT-G-TGCTAGC
1 CAGTGTAAGACCTGTCTGGGACATGGCATCGACCTCAATAGATGAAAGC
*
38061230 CAGTGTAAGACCATGTCTAGGACATGG
1 CAGTGTAAGACC-TGTCTGGGACATGG
38061257 GGTCGACATT
Statistics
Matches: 99, Mismatches: 22, Indels: 5
0.79 0.17 0.04
Matches are distributed among these distances:
47 16 0.16
48 12 0.12
49 71 0.72
ACGTcount: A:0.28, C:0.20, G:0.27, T:0.24
Consensus pattern (49 bp):
CAGTGTAAGACCTGTCTGGGACATGGCATCGACCTCAATAGATGAAAGC
Found at i:38062458 original size:20 final size:21
Alignment explanation
Indices: 38062419--38062458 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
38062409 GTCATAATGG
38062419 CCACACGAGCGTGTTGCCCTT
1 CCACACGAGCGTGTTGCCCTT
*
38062440 CCACACGGGCGTG-TGCCCT
1 CCACACGAGCGTGTTGCCCT
38062459 ACTTCAAGTG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 6 0.33
21 12 0.67
ACGTcount: A:0.12, C:0.40, G:0.28, T:0.20
Consensus pattern (21 bp):
CCACACGAGCGTGTTGCCCTT
Found at i:38064472 original size:39 final size:39
Alignment explanation
Indices: 38064413--38064509 Score: 126
Period size: 39 Copynumber: 2.5 Consensus size: 39
38064403 GACTTCGGGG
* *
38064413 CCGCA-GCTATGTGCTGGAATTATATCCA-GACTTAAGGT
1 CCGCAGGCTATGTGCTGGAATTATA-ACAGGACTTAAGCT
38064451 CCGCAGGCTATGTGCTGGAATTATAACAGGACTTAAGCT
1 CCGCAGGCTATGTGCTGGAATTATAACAGGACTTAAGCT
* **
38064490 CCGAAGGCTACATGCTGGAA
1 CCGCAGGCTATGTGCTGGAA
38064510 ATATGTCCGG
Statistics
Matches: 52, Mismatches: 5, Indels: 3
0.87 0.08 0.05
Matches are distributed among these distances:
38 7 0.13
39 45 0.87
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.25
Consensus pattern (39 bp):
CCGCAGGCTATGTGCTGGAATTATAACAGGACTTAAGCT
Found at i:38076048 original size:23 final size:22
Alignment explanation
Indices: 38076016--38076060 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 22
38076006 AGGGAAACTT
38076016 CATCCCATGAC-TTTACCATGCC
1 CATCCCATGACATTT-CCATGCC
38076038 CATCCTCATGACATTTCCATGCC
1 CATCC-CATGACATTTCCATGCC
38076061 AATGTCTCTC
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
22 5 0.24
23 13 0.62
24 3 0.14
ACGTcount: A:0.22, C:0.40, G:0.09, T:0.29
Consensus pattern (22 bp):
CATCCCATGACATTTCCATGCC
Found at i:38079504 original size:6 final size:6
Alignment explanation
Indices: 38079495--38079527 Score: 57
Period size: 6 Copynumber: 5.5 Consensus size: 6
38079485 AATAAAATTG
*
38079495 AAATGA AAATAA AAATAA AAATAA AAATAA AAA
1 AAATAA AAATAA AAATAA AAATAA AAATAA AAA
38079528 GATAGGATTC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 26 1.00
ACGTcount: A:0.82, C:0.00, G:0.03, T:0.15
Consensus pattern (6 bp):
AAATAA
Found at i:38102207 original size:28 final size:28
Alignment explanation
Indices: 38102139--38102292 Score: 229
Period size: 28 Copynumber: 5.5 Consensus size: 28
38102129 CATGAGATTG
* * * *
38102139 GCACTAAGTGTGCGGGTTTAAATTGTACA
1 GCACTAAGTGTGCGAGTTT-GATTATATA
38102168 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
38102196 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
* *
38102224 GCACTAAGTGTGCAAGTTTGATTATGTA
1 GCACTAAGTGTGCGAGTTTGATTATATA
38102252 GCACTAAGTGTGCGAG-TTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
38102279 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
38102293 GACTTAATAT
Statistics
Matches: 116, Mismatches: 9, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
27 23 0.20
28 75 0.65
29 18 0.16
ACGTcount: A:0.27, C:0.12, G:0.27, T:0.33
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:38104327 original size:48 final size:48
Alignment explanation
Indices: 38104251--38104494 Score: 380
Period size: 48 Copynumber: 5.0 Consensus size: 48
38104241 CAAGATAAAT
* *
38104251 ATATATATGTGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
* * *
38104299 ATATTTATATGTGGTAAAACCGAATGGCTAATGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
* * * *
38104347 ATATGTATATATGGTAAAGCCGAATGACTAATGTGAAATATATATATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTG-AA-ATATGTATGAG
38104397 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
*
38104445 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTAGGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
38104493 AT
1 AT
38104495 GTGTGTATAT
Statistics
Matches: 180, Mismatches: 14, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
48 134 0.74
49 4 0.02
50 42 0.23
ACGTcount: A:0.36, C:0.06, G:0.26, T:0.32
Consensus pattern (48 bp):
ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
Found at i:38104411 original size:98 final size:98
Alignment explanation
Indices: 38104262--38104485 Score: 371
Period size: 98 Copynumber: 2.3 Consensus size: 98
38104252 TATATATGTG
* *
38104262 TGGTAAAGCCGAATGGCTAGTGTG-AA-ATATGTATGAGATATTTATATGTGGTAAAACCGAATG
1 TGGTAAAGCCGAATGGCTAGTGTGAAATATATATATGAGATATGTATATGTGGTAAAACCGAATG
38104325 GCTAATGTGAAATATGTATGAGATATGTATATA
66 GCTAATGTGAAATATGTATGAGATATGTATATA
* * *
38104358 TGGTAAAGCCGAATGACTAATGTGAAATATATATATGAGATATGTATATGTGGTAAAGCCGAATG
1 TGGTAAAGCCGAATGGCTAGTGTGAAATATATATATGAGATATGTATATGTGGTAAAACCGAATG
* *
38104423 GCTAGTGTGAAATATGTATGAGATATGTATATG
66 GCTAATGTGAAATATGTATGAGATATGTATATA
38104456 TGGTAAAGCCGAATGGCTAGTGTGAAATAT
1 TGGTAAAGCCGAATGGCTAGTGTGAAATAT
38104486 GTAGGAGATG
Statistics
Matches: 117, Mismatches: 9, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
96 22 0.19
97 2 0.02
98 93 0.79
ACGTcount: A:0.36, C:0.07, G:0.26, T:0.31
Consensus pattern (98 bp):
TGGTAAAGCCGAATGGCTAGTGTGAAATATATATATGAGATATGTATATGTGGTAAAACCGAATG
GCTAATGTGAAATATGTATGAGATATGTATATA
Found at i:38104502 original size:98 final size:96
Alignment explanation
Indices: 38104251--38104509 Score: 351
Period size: 98 Copynumber: 2.6 Consensus size: 96
38104241 CAAGATAAAT
* * *
38104251 ATATATATGTGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATT-TATATGTGGTA
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTA-GAGATGTTGTATATGTGGTA
38104315 AAACCGAATGGCTAATGTGAAATATGTATGAG
65 AAACCGAATGGCTAATGTGAAATATGTATGAG
* * * * *
38104347 ATATGTATATATGGTAAAGCCGAATGACTAATGTGAAATATATATATGAGAT-ATGTATATGTGG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTG-AA-ATATGTA-GAGATGTTGTATATGTGG
* *
38104411 TAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
63 TAAAACCGAATGGCTAATGTGAAATATGTATGAG
38104445 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTAGGAGATGTGTGTATATTGTGG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTA-GAGATGT-TGTATA-TGTGG
38104510 CCAAATGACC
Statistics
Matches: 142, Mismatches: 15, Indels: 9
0.86 0.09 0.05
Matches are distributed among these distances:
96 41 0.29
97 5 0.04
98 91 0.64
99 5 0.04
ACGTcount: A:0.35, C:0.06, G:0.27, T:0.32
Consensus pattern (96 bp):
ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTAGAGATGTTGTATATGTGGTAA
AACCGAATGGCTAATGTGAAATATGTATGAG
Found at i:38104685 original size:37 final size:37
Alignment explanation
Indices: 38104635--38104739 Score: 183
Period size: 37 Copynumber: 2.8 Consensus size: 37
38104625 GGAAATATAT
38104635 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
38104672 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* *
38104709 TCCGGGTAAGACCCGATAACTTCGTGTGGAG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAG
38104740 GTTTCATCTG
Statistics
Matches: 65, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 65 1.00
ACGTcount: A:0.23, C:0.20, G:0.32, T:0.25
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Done.