Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A06
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 115140250
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2234201 characters in sequence are not A, C, G, or T
File 133 of 345
Found at i:44963105 original size:27 final size:27
Alignment explanation
Indices: 44962969--44963109 Score: 112
Period size: 27 Copynumber: 5.3 Consensus size: 27
44962959 TTAGTTTACC
* *
44962969 AAATTACTGAAATATCCC-C-AGTTGTA
1 AAATTACTGAAATA-CCCTCGATTTATA
*
44962995 AAATTACT-AAAGTACCC-CCAGTTTATA
1 AAATTACTGAAA-TACCCTCGA-TTTATA
** * *
44963022 AAATTACCCAAATATCCTCGATTTGTA
1 AAATTACTGAAATACCCTCGATTTATA
**
44963049 AAATTACTGAAATACCCTC-AGTTTGCA
1 AAATTACTGAAATACCCTCGA-TTTATA
**
44963076 AAATTACTGAAATACCCTCGATCAATA
1 AAATTACTGAAATACCCTCGATTTATA
44963103 AAATTAC
1 AAATTAC
44963110 CAAAATATTT
Statistics
Matches: 94, Mismatches: 14, Indels: 13
0.78 0.12 0.11
Matches are distributed among these distances:
25 7 0.07
26 12 0.13
27 69 0.73
28 6 0.06
ACGTcount: A:0.40, C:0.21, G:0.09, T:0.30
Consensus pattern (27 bp):
AAATTACTGAAATACCCTCGATTTATA
Found at i:44963116 original size:54 final size:54
Alignment explanation
Indices: 44962993--44963116 Score: 140
Period size: 54 Copynumber: 2.3 Consensus size: 54
44962983 TCCCCAGTTG
* * * ***
44962993 TAAAATTACTAAAGTACCCCCAGTTTATAAAATTACCCAAATATCCTCGATTTG
1 TAAAATTACTAAAATACCCCCAGTTTACAAAATTACCCAAATACCCTCGATCAA
* * * **
44963047 TAAAATTACTGAAATACCCTCAGTTTGCAAAATTACTGAAATACCCTCGATCAA
1 TAAAATTACTAAAATACCCCCAGTTTACAAAATTACCCAAATACCCTCGATCAA
*
44963101 TAAAATTACCAAAATA
1 TAAAATTACTAAAATA
44963117 TTTGTAAAAT
Statistics
Matches: 57, Mismatches: 13, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
54 57 1.00
ACGTcount: A:0.43, C:0.21, G:0.07, T:0.29
Consensus pattern (54 bp):
TAAAATTACTAAAATACCCCCAGTTTACAAAATTACCCAAATACCCTCGATCAA
Found at i:44963257 original size:27 final size:27
Alignment explanation
Indices: 44963151--44963703 Score: 600
Period size: 27 Copynumber: 20.9 Consensus size: 27
44963141 TGGTTTACAA
* *
44963151 AATTACCGAAATA-CCTTGTA-GGTAG
1 AATTATCGAAATACCCCTGTAGGGTAG
* * *
44963176 AATTATTGGAAT--CCCTGTAAGGTAG
1 AATTATCGAAATACCCCTGTAGGGTAG
*
44963201 AATTA-CTAGAATA-CCCTGTA-GGTAG
1 AATTATCGA-AATACCCCTGTAGGGTAG
* *
44963226 AATTACCGAAATACCCCTGTAGGGTAA
1 AATTATCGAAATACCCCTGTAGGGTAG
* *
44963253 AATTATCGAAATACCCCTGTAAGGTAA
1 AATTATCGAAATACCCCTGTAGGGTAG
* * *
44963280 AATTATCGTAATACCCCTATAAGGTAG
1 AATTATCGAAATACCCCTGTAGGGTAG
44963307 AATTATCGAAATACCCCTGTAGGGTAG
1 AATTATCGAAATACCCCTGTAGGGTAG
*
44963334 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTATCGAAATACCCCTGTAGGGTAG
*
44963361 AATTATCGAAATACCCTTGTAGGGTAG
1 AATTATCGAAATACCCCTGTAGGGTAG
* *
44963388 AATTATCGTAATACCCCTATAGGGTAG
1 AATTATCGAAATACCCCTGTAGGGTAG
44963415 AATTATCGAAATACCCCTTGTAGGGTAG
1 AATTATCGAAATACCCC-TGTAGGGTAG
* * * *
44963443 AATTACCGAAAT--TCTTGTTGGGTAG
1 AATTATCGAAATACCCCTGTAGGGTAG
*
44963468 AATTA-CTGAAATACCCAT-TAGGGTAG
1 AATTATC-GAAATACCCCTGTAGGGTAG
* * *
44963494 AATTATCGCAATACACCTATA-GGTAG
1 AATTATCGAAATACCCCTGTAGGGTAG
* *
44963520 AATTA-CTGCAATACCCTTGTA-GGTAG
1 AATTATC-GAAATACCCCTGTAGGGTAG
*
44963546 AATTACCGAAATA-CCCTGTAGGGTAG
1 AATTATCGAAATACCCCTGTAGGGTAG
* *
44963572 AATTAT-AAAATACCCCTATAGGGTAG
1 AATTATCGAAATACCCCTGTAGGGTAG
*
44963598 AATTACCGAAATACCCCTGTAGGG-AG
1 AATTATCGAAATACCCCTGTAGGGTAG
* * *
44963624 AATTATAGCAATACCCCTGTAAGGTAG
1 AATTATCGAAATACCCCTGTAGGGTAG
* * *
44963651 AATTACCCAAAAATACCCTTGTAGGGTAG
1 AATTA-TC-GAAATACCCCTGTAGGGTAG
44963680 AATTATCGAAATACCCCTGTAGGG
1 AATTATCGAAATACCCCTGTAGGG
44963704 NNNNNNNNNN
Statistics
Matches: 449, Mismatches: 59, Indels: 38
0.82 0.11 0.07
Matches are distributed among these distances:
24 7 0.02
25 67 0.15
26 122 0.27
27 211 0.47
28 21 0.05
29 21 0.05
ACGTcount: A:0.35, C:0.18, G:0.20, T:0.27
Consensus pattern (27 bp):
AATTATCGAAATACCCCTGTAGGGTAG
Found at i:44974302 original size:27 final size:26
Alignment explanation
Indices: 44974269--44974382 Score: 138
Period size: 27 Copynumber: 4.2 Consensus size: 26
44974259 CATGGCTACC
* *
44974269 AGAACAGATATTGTGACAGAGTCACT
1 AGAACAGATATTGTGGCAGAGCCACT
*
44974295 AGATACAGATATTGTGGCAGAGCCACC
1 AGA-ACAGATATTGTGGCAGAGCCACT
*
44974322 AGAACAGATATCTGTGGCATAGCCACT
1 AGAACAGATAT-TGTGGCAGAGCCACT
* *
44974349 AGAAACAGATAATTGTGGCATAGCCACC
1 AG-AACAGAT-ATTGTGGCAGAGCCACT
44974377 AGAACA
1 AGAACA
44974383 CTTCCTCCAT
Statistics
Matches: 78, Mismatches: 6, Indels: 7
0.86 0.07 0.08
Matches are distributed among these distances:
26 11 0.14
27 42 0.54
28 23 0.29
29 2 0.03
ACGTcount: A:0.38, C:0.20, G:0.23, T:0.19
Consensus pattern (26 bp):
AGAACAGATATTGTGGCAGAGCCACT
Found at i:44974374 original size:55 final size:53
Alignment explanation
Indices: 44974266--44974382 Score: 171
Period size: 55 Copynumber: 2.2 Consensus size: 53
44974256 TAGCATGGCT
* *
44974266 ACCAGAACAGATATTGTGACAGAGTCACTAGATACAGATATTGTGGCAGAGCC
1 ACCAGAACAGATATTGTGACAGAGCCACTAGAAACAGATATTGTGGCAGAGCC
* * *
44974319 ACCAGAACAGATATCTGTGGCATAGCCACTAGAAACAGATAATTGTGGCATAGCC
1 ACCAGAACAGATAT-TGTGACAGAGCCACTAGAAACAGAT-ATTGTGGCAGAGCC
44974374 ACCAGAACA
1 ACCAGAACA
44974383 CTTCCTCCAT
Statistics
Matches: 57, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
53 14 0.25
54 21 0.37
55 22 0.39
ACGTcount: A:0.38, C:0.21, G:0.22, T:0.19
Consensus pattern (53 bp):
ACCAGAACAGATATTGTGACAGAGCCACTAGAAACAGATATTGTGGCAGAGCC
Found at i:44974545 original size:27 final size:28
Alignment explanation
Indices: 44974483--44974548 Score: 107
Period size: 28 Copynumber: 2.4 Consensus size: 28
44974473 CAAAATTAAC
* *
44974483 CTTAGGGGTATAATGGTCATTTTGCATA
1 CTTAGGGGTATAATGGTAATTGTGCATA
44974511 CTTAGGGGTATAATGGTAATTGT-CATA
1 CTTAGGGGTATAATGGTAATTGTGCATA
44974538 CTTAGGGGTAT
1 CTTAGGGGTAT
44974549 TTTAGTAAAT
Statistics
Matches: 36, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
27 15 0.42
28 21 0.58
ACGTcount: A:0.26, C:0.09, G:0.27, T:0.38
Consensus pattern (28 bp):
CTTAGGGGTATAATGGTAATTGTGCATA
Found at i:44983726 original size:50 final size:50
Alignment explanation
Indices: 44983575--44983889 Score: 294
Period size: 50 Copynumber: 6.5 Consensus size: 50
44983565 TGATATGTGC
* * * *
44983575 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCAC--AT--TTCGTGT
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATC-GACACTGATAGAT-GAGA
* * * * *
44983623 GCCACTGTAAGACCATGT-T-GGACATGGCATCGGCA-TG-GAGACGAGA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGACACTGATAGATGAGA
* * *
44983669 GCTAGTGTAAGACTATGTCTGGGACATGACATCGACACTAATAGATGAGA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGACACTGATAGATGAGA
* * *
44983719 GCTAGTGTAAGACCATGTCTGGGACATGGCATCAATACCGATAGATGAGA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGACACTGATAGATGAGA
* * * *
44983769 GCTAGTGTAACACCATGTCTGGGACATGGCATTG-C-CTCGATATACGAGA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGACACT-GATAGATGAGA
* * ** * *
44983818 GTTAGTGTAAGACCATGTTTGGGACATGGCATCGACTTTGAT-G-GGTGA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGACACTGATAGATGAGA
44983866 GCTAGTGTAAGACCATGTCTGGGA
1 GCTAGTGTAAGACCATGTCTGGGA
44983890 TATGATGTCG
Statistics
Matches: 217, Mismatches: 39, Indels: 22
0.78 0.14 0.08
Matches are distributed among these distances:
45 3 0.01
46 29 0.13
47 2 0.01
48 56 0.26
49 40 0.18
50 86 0.40
51 1 0.00
ACGTcount: A:0.27, C:0.19, G:0.30, T:0.24
Consensus pattern (50 bp):
GCTAGTGTAAGACCATGTCTGGGACATGGCATCGACACTGATAGATGAGA
Found at i:44983843 original size:99 final size:100
Alignment explanation
Indices: 44983665--44983850 Score: 268
Period size: 99 Copynumber: 1.9 Consensus size: 100
44983655 GCATGGAGAC
* * *
44983665 GAGAGCTAGTGTAAGACTATGTCTGGGACATGACATCGACACTAATAGATGAGAGCTAGTGTAAG
1 GAGAGCTAGTGTAACACCATGTCTGGGACATGACATCGACACTAATAGACGAGAGCTAGTGTAAG
44983730 ACCATGTCTGGGACATGGCATCAATACCGATAGAT
66 ACCATGTCTGGGACATGGCATCAATACCGATAGAT
* * * * *
44983765 GAGAGCTAGTGTAACACCATGTCTGGGACATGGCATTG-C-CTCGATATACGAGAGTTAGTGTAA
1 GAGAGCTAGTGTAACACCATGTCTGGGACATGACATCGACACT-AATAGACGAGAGCTAGTGTAA
*
44983828 GACCATGTTTGGGACATGGCATC
65 GACCATGTCTGGGACATGGCATC
44983851 GACTTTGATG
Statistics
Matches: 76, Mismatches: 9, Indels: 3
0.86 0.10 0.03
Matches are distributed among these distances:
98 2 0.03
99 40 0.53
100 34 0.45
ACGTcount: A:0.30, C:0.18, G:0.28, T:0.24
Consensus pattern (100 bp):
GAGAGCTAGTGTAACACCATGTCTGGGACATGACATCGACACTAATAGACGAGAGCTAGTGTAAG
ACCATGTCTGGGACATGGCATCAATACCGATAGAT
Found at i:44985075 original size:31 final size:31
Alignment explanation
Indices: 44985037--44985098 Score: 124
Period size: 31 Copynumber: 2.0 Consensus size: 31
44985027 ATTTTCATAC
44985037 GGTCTTACTAAGCCATAAAGCTTACTCTCTT
1 GGTCTTACTAAGCCATAAAGCTTACTCTCTT
44985068 GGTCTTACTAAGCCATAAAGCTTACTCTCTT
1 GGTCTTACTAAGCCATAAAGCTTACTCTCTT
44985099 ACTTTCCTTT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.26, C:0.26, G:0.13, T:0.35
Consensus pattern (31 bp):
GGTCTTACTAAGCCATAAAGCTTACTCTCTT
Found at i:44993826 original size:20 final size:20
Alignment explanation
Indices: 44993798--44993837 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
44993788 ATACAACTTA
*
44993798 ACCATTATGCCATTTGGAAC
1 ACCAATATGCCATTTGGAAC
44993818 ACCAATATGCCATTTGGAAC
1 ACCAATATGCCATTTGGAAC
44993838 CATCACAACC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.33, C:0.25, G:0.15, T:0.28
Consensus pattern (20 bp):
ACCAATATGCCATTTGGAAC
Found at i:44995062 original size:20 final size:20
Alignment explanation
Indices: 44995016--44995078 Score: 72
Period size: 20 Copynumber: 3.1 Consensus size: 20
44995006 ACTGGAGTGG
* * *
44995016 AAATAGAGACACTAAAGTCT
1 AAATAGAGGCATTAAAGTCC
44995036 AAATAGAGGCATTAAAGTCC
1 AAATAGAGGCATTAAAGTCC
* * *
44995056 AAGTAGAGGCATTGAAGTGC
1 AAATAGAGGCATTAAAGTCC
44995076 AAA
1 AAA
44995079 CTCGTAGAAG
Statistics
Matches: 36, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 36 1.00
ACGTcount: A:0.46, C:0.13, G:0.22, T:0.19
Consensus pattern (20 bp):
AAATAGAGGCATTAAAGTCC
Found at i:44999747 original size:22 final size:23
Alignment explanation
Indices: 44999705--44999747 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
44999695 TAGTAATGGC
* *
44999705 TTATTTTGGTATGATTAAGTAGG
1 TTATTATGATATGATTAAGTAGG
44999728 TTATTATGATATG-TTAAGTA
1 TTATTATGATATGATTAAGTA
44999748 TGTGTGATCA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 7 0.39
23 11 0.61
ACGTcount: A:0.30, C:0.00, G:0.21, T:0.49
Consensus pattern (23 bp):
TTATTATGATATGATTAAGTAGG
Found at i:45003876 original size:46 final size:46
Alignment explanation
Indices: 45003826--45003998 Score: 208
Period size: 46 Copynumber: 3.7 Consensus size: 46
45003816 TGGTTGAGCA
*
45003826 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * * *
45003872 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--A--CG
* *
45003919 TCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* *
45003965 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
45003999 GGGGCGGGTT
Statistics
Matches: 107, Mismatches: 13, Indels: 14
0.80 0.10 0.10
Matches are distributed among these distances:
43 6 0.06
45 3 0.03
46 61 0.57
47 29 0.27
48 3 0.03
50 5 0.05
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:45003982 original size:93 final size:93
Alignment explanation
Indices: 45003823--45003993 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
45003813 GGATGGTTGA
* *
45003823 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
45003888 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* * *
45003916 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
45003981 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
45003994 ACTTAGGGGC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:45011483 original size:46 final size:46
Alignment explanation
Indices: 45011433--45011605 Score: 208
Period size: 46 Copynumber: 3.7 Consensus size: 46
45011423 TGGTTGAGCA
*
45011433 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * * *
45011479 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--A--CG
* *
45011526 TCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* *
45011572 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
45011606 GGGGCGGGTT
Statistics
Matches: 107, Mismatches: 13, Indels: 14
0.80 0.10 0.10
Matches are distributed among these distances:
43 6 0.06
45 3 0.03
46 61 0.57
47 29 0.27
48 3 0.03
50 5 0.05
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:45011589 original size:93 final size:93
Alignment explanation
Indices: 45011430--45011600 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
45011420 GGATGGTTGA
* *
45011430 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
45011495 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* * *
45011523 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
45011588 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
45011601 ACTTAGGGGC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:45015893 original size:27 final size:27
Alignment explanation
Indices: 45015772--45015897 Score: 143
Period size: 27 Copynumber: 4.7 Consensus size: 27
45015762 TTAGTTTACC
45015772 AAATTACTGAAATATCCC-CAG-TTGTA
1 AAATTACTGAAATA-CCCTCAGTTTGTA
* *
45015798 AAATTACT-AAAGTACCCCCAGTTTATA
1 AAATTACTGAAA-TACCCTCAGTTTGTA
** *
45015825 AAATTACCCAAATATCCTC-GATTTGTA
1 AAATTACTGAAATACCCTCAG-TTTGTA
*
45015852 AAATTACTGAAATACCCTCAGTTTGCA
1 AAATTACTGAAATACCCTCAGTTTGTA
45015879 AAATTACTGAAATACCCTC
1 AAATTACTGAAATACCCTC
45015898 GATCAATAAA
Statistics
Matches: 85, Mismatches: 9, Indels: 11
0.81 0.09 0.10
Matches are distributed among these distances:
25 6 0.07
26 14 0.16
27 61 0.72
28 4 0.05
ACGTcount: A:0.39, C:0.22, G:0.09, T:0.30
Consensus pattern (27 bp):
AAATTACTGAAATACCCTCAGTTTGTA
Found at i:45015908 original size:27 final size:27
Alignment explanation
Indices: 45015772--45015912 Score: 112
Period size: 27 Copynumber: 5.3 Consensus size: 27
45015762 TTAGTTTACC
* *
45015772 AAATTACTGAAATATCCC-C-AGTTGTA
1 AAATTACTGAAATA-CCCTCGATTTATA
*
45015798 AAATTACT-AAAGTACCC-CCAGTTTATA
1 AAATTACTGAAA-TACCCTCGA-TTTATA
** * *
45015825 AAATTACCCAAATATCCTCGATTTGTA
1 AAATTACTGAAATACCCTCGATTTATA
**
45015852 AAATTACTGAAATACCCTC-AGTTTGCA
1 AAATTACTGAAATACCCTCGA-TTTATA
**
45015879 AAATTACTGAAATACCCTCGATCAATA
1 AAATTACTGAAATACCCTCGATTTATA
45015906 AAATTAC
1 AAATTAC
45015913 CAAAATATTT
Statistics
Matches: 94, Mismatches: 14, Indels: 13
0.78 0.12 0.11
Matches are distributed among these distances:
25 7 0.07
26 12 0.13
27 69 0.73
28 6 0.06
ACGTcount: A:0.40, C:0.21, G:0.09, T:0.30
Consensus pattern (27 bp):
AAATTACTGAAATACCCTCGATTTATA
Found at i:45015919 original size:54 final size:54
Alignment explanation
Indices: 45015796--45015919 Score: 140
Period size: 54 Copynumber: 2.3 Consensus size: 54
45015786 TCCCCAGTTG
* * * ***
45015796 TAAAATTACTAAAGTACCCCCAGTTTATAAAATTACCCAAATATCCTCGATTTG
1 TAAAATTACTAAAATACCCCCAGTTTACAAAATTACCCAAATACCCTCGATCAA
* * * **
45015850 TAAAATTACTGAAATACCCTCAGTTTGCAAAATTACTGAAATACCCTCGATCAA
1 TAAAATTACTAAAATACCCCCAGTTTACAAAATTACCCAAATACCCTCGATCAA
*
45015904 TAAAATTACCAAAATA
1 TAAAATTACTAAAATA
45015920 TTTTGTAAAA
Statistics
Matches: 57, Mismatches: 13, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
54 57 1.00
ACGTcount: A:0.43, C:0.21, G:0.07, T:0.29
Consensus pattern (54 bp):
TAAAATTACTAAAATACCCCCAGTTTACAAAATTACCCAAATACCCTCGATCAA
Found at i:45015985 original size:27 final size:27
Alignment explanation
Indices: 45015955--45016644 Score: 878
Period size: 27 Copynumber: 25.6 Consensus size: 27
45015945 TGGTTTACAA
*
45015955 AATTACCGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
** * *
45015982 AATTATTGGAATACCCCTGTAAGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
45016009 AATTA-CTAGAATACCCCTGTAGGGTAG
1 AATTACCGA-AATACCCCTGTAGGGTAG
*
45016036 AATTACCGAAATACCCCTGTAGGGTAA
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
45016063 AATTATCGAAATACCCCTGTAAGGTAA
1 AATTACCGAAATACCCCTGTAGGGTAG
* * * *
45016090 AATTATCGTAATACCCCTATAAGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
45016117 AATTATCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
45016144 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
45016171 AATTATCGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
45016198 AATTATCGTAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
45016225 AATTATCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
45016252 AATTACCGAAATTCCCTTGTTGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
45016279 AATTACTGAAATACCCATGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * * *
45016306 AATTATCGCAATACACCTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
45016333 AATTACTGCAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
45016360 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*** *
45016387 AATTATTAAAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
45016414 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
** * *
45016441 AATTATAGCAATACCCCTGTAAGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
45016468 AATTACCAAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
45016495 AATTATCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
45016522 AATTATCGCAATACCCCTGTAAGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
45016549 AATTACCGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
**
45016576 AATTACTAAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
** *
45016603 AATTACTAAAATACCCCTGTAGGGTGG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
45016630 AATTACCGAGATACC
1 AATTACCGAAATACC
45016645 TTGTGGGATA
Statistics
Matches: 578, Mismatches: 83, Indels: 4
0.87 0.12 0.01
Matches are distributed among these distances:
27 576 1.00
28 2 0.00
ACGTcount: A:0.35, C:0.19, G:0.20, T:0.26
Consensus pattern (27 bp):
AATTACCGAAATACCCCTGTAGGGTAG
Found at i:45017141 original size:22 final size:22
Alignment explanation
Indices: 45017089--45017153 Score: 78
Period size: 22 Copynumber: 3.0 Consensus size: 22
45017079 TTAAAGCCTT
* *
45017089 CTGATTATGGCTTTGTGTCAAC
1 CTGATTATGGCTCTGTGCCAAC
*
45017111 CT-ACATATGGCTCTGTGCCAAC
1 CTGA-TTATGGCTCTGTGCCAAC
*
45017133 CTGATTATGGCTGTGTGCCAA
1 CTGATTATGGCTCTGTGCCAA
45017154 ACGCATTTGC
Statistics
Matches: 36, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
21 1 0.03
22 34 0.94
23 1 0.03
ACGTcount: A:0.20, C:0.23, G:0.23, T:0.34
Consensus pattern (22 bp):
CTGATTATGGCTCTGTGCCAAC
Found at i:45017413 original size:27 final size:26
Alignment explanation
Indices: 45017312--45017413 Score: 114
Period size: 27 Copynumber: 3.8 Consensus size: 26
45017302 ATTCTGTTAA
* *
45017312 GTGGCTTTGCCACATTATCTATTTCTG
1 GTGGCTTTGCCACAATATCT-GTTCTG
*
45017339 GTGGCTATGCCACAAATATCTGTTCTG
1 GTGGCTTTGCCAC-AATATCTGTTCTG
* *
45017366 TTGGCTCTGCCACAATATCTGTATCTG
1 GTGGCTTTGCCACAATATCTGT-TCTG
* *
45017393 GTGACTTTGTCACAATATCTG
1 GTGGCTTTGCCACAATATCTG
45017414 ATAACTGAGC
Statistics
Matches: 64, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
26 9 0.14
27 49 0.77
28 6 0.09
ACGTcount: A:0.20, C:0.23, G:0.20, T:0.38
Consensus pattern (26 bp):
GTGGCTTTGCCACAATATCTGTTCTG
Found at i:45017596 original size:31 final size:31
Alignment explanation
Indices: 45017561--45017629 Score: 111
Period size: 31 Copynumber: 2.2 Consensus size: 31
45017551 TTCTGATTTT
* *
45017561 TGATTCTGTTACCTGATACTGATTTTGATTC
1 TGATTCTGTCACCTGATACTGATTTTGATTA
*
45017592 TGATTCTGTCACCTGATTCTGATTTTGATTA
1 TGATTCTGTCACCTGATACTGATTTTGATTA
45017623 TGATTCT
1 TGATTCT
45017630 AGTTCTGATA
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
31 35 1.00
ACGTcount: A:0.19, C:0.16, G:0.16, T:0.49
Consensus pattern (31 bp):
TGATTCTGTCACCTGATACTGATTTTGATTA
Found at i:45037729 original size:23 final size:23
Alignment explanation
Indices: 45037698--45037746 Score: 71
Period size: 23 Copynumber: 2.1 Consensus size: 23
45037688 TGCCGAGAGA
* *
45037698 AAGAGTTACTTGGGATTTCTTTC
1 AAGAGTTACCTAGGATTTCTTTC
*
45037721 AAGATTTACCTAGGATTTCTTTC
1 AAGAGTTACCTAGGATTTCTTTC
45037744 AAG
1 AAG
45037747 CTGAGTTCAG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.27, C:0.14, G:0.18, T:0.41
Consensus pattern (23 bp):
AAGAGTTACCTAGGATTTCTTTC
Found at i:45041812 original size:50 final size:51
Alignment explanation
Indices: 45041747--45042136 Score: 348
Period size: 50 Copynumber: 7.7 Consensus size: 51
45041737 ACCGAAGCTC
* * *
45041747 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAAT
1 TCTGATACACGTAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAAT
* * * *
45041798 TC-GATACACGTAGTAGCCTGTACTTAGTACTAAACATGTGACTTATCCA-
1 TCTGATACACGTAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAAT
* * * * * * *
45041847 TCTGATACATGTAGTAGCCTGCACATAATACTACACACGTGATCGA--AGT
1 TCTGATACACGTAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAAT
* * * * * * *
45041896 TAACGGGTACGCATAGTAGCCTGTACTTAGTACTACATATGCGACCTATCAA-
1 T--CTGATACACGTAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAAT
* * * *
45041948 TCCGGTACACGTAGTAGCCTGCACTTAGTACTACACATGTAACCTAAGC-A-
1 TCTGATACACGTAGTAGCCTGCACTTAGTACTACACATGTGACCT-ATCAAT
* * *
45041998 TCTGATACACTTAGTAGCCTGCACTTAGTACTACACATGCGACCTAACAA-
1 TCTGATACACGTAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAAT
* * * *
45042048 TCTGGTACACGTAGTAGCCTACACTTAGTACTACACACGTGACCTA-AAACT
1 TCTGATACACGTAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAA-T
* * * *
45042099 GTCTTAAACACATAGTAGCCTGCACATAGTACTACACA
1 -TCTGATACACGTAGTAGCCTGCACTTAGTACTACACA
45042137 GGTGTTCTCA
Statistics
Matches: 270, Mismatches: 58, Indels: 21
0.77 0.17 0.06
Matches are distributed among these distances:
49 7 0.03
50 194 0.72
51 36 0.13
52 32 0.12
53 1 0.00
ACGTcount: A:0.32, C:0.26, G:0.16, T:0.26
Consensus pattern (51 bp):
TCTGATACACGTAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAAT
Found at i:45042013 original size:151 final size:151
Alignment explanation
Indices: 45041750--45042093 Score: 442
Period size: 151 Copynumber: 2.3 Consensus size: 151
45041740 GAAGCTCTCT
*
45041750 GGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATTCGATACACGTAGTAGC
1 GGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCCGATACACGTAGTAGC
* * * *
45041815 CTGTACTTAGTACTAAACATGTGACTTATCCATCTGATACATGTAGTAGCCTGCACATAATACTA
66 CTGCACTTAGTACTAAACATGTAACCTAACCATCTGATACATGTAGTAGCCTGCACATAATACTA
45041880 CACACGTGATCGAAGTTAACG
131 CACACGTGATCGAAGTTAACG
* * * *
45041901 GGTACGCATAGTAGCCTGTACTTAGTACTACATATGCGACCTATCAATCCGGTACACGTAGTAGC
1 GGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCCGATACACGTAGTAGC
* * * *
45041966 CTGCACTTAGTACTACACATGTAACCTAAGCATCTGATACACT-TAGTAGCCTGCACTTAGTACT
66 CTGCACTTAGTACTAAACATGTAACCTAACCATCTGATACA-TGTAGTAGCCTGCACATAATACT
* * * * * *
45042030 ACACATGCGACCTAA--CAATCT
130 ACACACGTGATCGAAGTTAA-CG
* * * *
45042051 GGTACACGTAGTAGCCTACACTTAGTACTACACACGTGACCTA
1 GGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCTA
45042094 AAACTGTCTT
Statistics
Matches: 165, Mismatches: 26, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
149 2 0.01
150 37 0.22
151 125 0.76
152 1 0.01
ACGTcount: A:0.31, C:0.26, G:0.17, T:0.26
Consensus pattern (151 bp):
GGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCCGATACACGTAGTAGC
CTGCACTTAGTACTAAACATGTAACCTAACCATCTGATACATGTAGTAGCCTGCACATAATACTA
CACACGTGATCGAAGTTAACG
Found at i:45049033 original size:180 final size:180
Alignment explanation
Indices: 45048751--45049087 Score: 480
Period size: 180 Copynumber: 1.9 Consensus size: 180
45048741 TAAGATTCGT
* * * * *
45048751 TAATTTTCCCAGAAGCTAGACTCACATATATACTTACCATAAAATTTTTAGAATTTTTGGTTTAT
1 TAATTTTACCAGAAACTAAACTCACATATATACTTACCATAAAATTTTAAGAATTTTTGGTTTAG
* * * * ** *
45048816 CCAATTAGTACATTTTATTCATTAAATTTACCCCTATTTCACTATCC-ATTAGTTCCGACCTCTC
66 CCAATTAATACAGTTTATTCATTAAATATACCCCTATTTCACTATCCGA-CAACTCCAACCTCTC
45048880 TTCACTAAAAATTATTTATCTCATGGTACGAGACTCCAAATTAAGAACTGC
130 TTCACTAAAAATTATTTATCTCATGGTACGAGACTCCAAATTAAGAACTGC
* *
45048931 TAATTTTACCAGAAACTAAACTCACATATATTCTTACCATAAAATTTTAAGAATTTTTTTGTTTA
1 TAATTTTACCAGAAACTAAACTCACATATATACTTACCATAAAATTTTAAGAA-TTTTTGGTTTA
* * *
45048996 GCCAATTAATACAGTTTATTCATTAAATATA-CCCTATTTCACTGTCCGACAACTCCAATCTTTC
65 GCCAATTAATACAGTTTATTCATTAAATATACCCCTATTTCACTATCCGACAACTCCAACCTCTC
*
45049060 TTCAGTAAAAATTATTTATCTCATGGTA
130 TTCACTAAAAATTATTTATCTCATGGTA
45049088 AAGATCTCGG
Statistics
Matches: 137, Mismatches: 18, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
180 99 0.72
181 38 0.28
ACGTcount: A:0.34, C:0.20, G:0.07, T:0.39
Consensus pattern (180 bp):
TAATTTTACCAGAAACTAAACTCACATATATACTTACCATAAAATTTTAAGAATTTTTGGTTTAG
CCAATTAATACAGTTTATTCATTAAATATACCCCTATTTCACTATCCGACAACTCCAACCTCTCT
TCACTAAAAATTATTTATCTCATGGTACGAGACTCCAAATTAAGAACTGC
Found at i:45049431 original size:16 final size:16
Alignment explanation
Indices: 45049412--45049443 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
45049402 CAAAACTGTT
45049412 TTTTTACAAAATTTCA
1 TTTTTACAAAATTTCA
*
45049428 TTTTTACATAATTTCA
1 TTTTTACAAAATTTCA
45049444 CTTACTCCAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.34, C:0.12, G:0.00, T:0.53
Consensus pattern (16 bp):
TTTTTACAAAATTTCA
Found at i:45049721 original size:50 final size:50
Alignment explanation
Indices: 45049657--45049943 Score: 387
Period size: 50 Copynumber: 5.7 Consensus size: 50
45049647 CTGGTATGCA
* *
45049657 TAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAATCTGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACAATCTGGTACACG
** * * * * *
45049707 TAGTAGCCTGCACTTAGTACTACACATTTGACTTATCTATCTGATACATG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACAATCTGGTACACG
* *
45049757 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACAATCTGATACATG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACAATCTGGTACACG
* * * * *
45049807 TAGTAGCCTGCACTTAGTACTACACACGTGA-TTGAAACTATCGGGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCT--AACAATCTGGTACACG
* *
45049858 TAGTAGCCTGCACTTAGTACTACACATGCGACCTAACAATCTGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACAATCTGGTACACG
45049908 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAA
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAA
45049944 AACTGTCTTA
Statistics
Matches: 208, Mismatches: 26, Indels: 6
0.87 0.11 0.03
Matches are distributed among these distances:
49 1 0.00
50 167 0.80
51 39 0.19
52 1 0.00
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (50 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACAATCTGGTACACG
Found at i:45049878 original size:151 final size:150
Alignment explanation
Indices: 45049657--45049943 Score: 423
Period size: 151 Copynumber: 1.9 Consensus size: 150
45049647 CTGGTATGCA
* * * *
45049657 TAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAATCTGGTACACGTAGTAGCCTGCACTT
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACAATCGGGTACACATAGTAGCCTGCACTT
** * * * *
45049722 AGTACTACACATTTGACTTATCTATCTGATACATGTAGTAGCCTGCACTTAGTACTACACACGTG
66 AGTACTACACATGCGACCTAACAATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGTG
45049787 ACCTAACAATCTGATACATG
131 ACCTAACAATCTGATACATG
* * *
45049807 TAGTAGCCTGCACTTAGTACTACACACGTGA-TTGAAACTATCGGGTACGCATAGTAGCCTGCAC
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCT--AACAATCGGGTACACATAGTAGCCTGCAC
*
45049871 TTAGTACTACACATGCGACCTAACAATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACG
64 TTAGTACTACACATGCGACCTAACAATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACG
45049936 TGACCTAA
129 TGACCTAA
45049944 AACTGTCTTA
Statistics
Matches: 121, Mismatches: 14, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
149 1 0.01
150 30 0.25
151 90 0.74
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (150 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACAATCGGGTACACATAGTAGCCTGCACTT
AGTACTACACATGCGACCTAACAATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGTG
ACCTAACAATCTGATACATG
Found at i:45049891 original size:101 final size:100
Alignment explanation
Indices: 45049649--45049939 Score: 431
Period size: 101 Copynumber: 2.9 Consensus size: 100
45049639 GAAGCTCTCT
* *
45049649 GGTATGCATAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAATCTGGTACACGTAGTAGC
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGTGACCTAACAATCTGGTACACGTAGTAGC
** * *
45049714 CTGCACTTAGTACTACACATTTGACTTATCTATCT
66 CTGCACTTAGTACTACACACGTGACTTAACTATCG
* *** * * *
45049749 GATACATGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAACAATCTGATACATGTAGTAGC
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGTGACCTAACAATCTGGTACACGTAGTAGC
45049814 CTGCACTTAGTACTACACACGTGA-TTGAAACTATCG
66 CTGCACTTAGTACTACACACGTGACTT--AACTATCG
*
45049850 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTAACAATCTGGTACACGTAGTAGC
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGTGACCTAACAATCTGGTACACGTAGTAGC
45049915 CTGCACTTAGTACTACACACGTGAC
66 CTGCACTTAGTACTACACACGTGAC
45049940 CTAAAACTGT
Statistics
Matches: 167, Mismatches: 21, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
99 2 0.01
100 78 0.47
101 87 0.52
ACGTcount: A:0.29, C:0.25, G:0.18, T:0.27
Consensus pattern (100 bp):
GGTACGCATAGTAGCCTGCACTTAGTACTACACATGTGACCTAACAATCTGGTACACGTAGTAGC
CTGCACTTAGTACTACACACGTGACTTAACTATCG
Found at i:45060460 original size:34 final size:34
Alignment explanation
Indices: 45060417--45060481 Score: 121
Period size: 34 Copynumber: 1.9 Consensus size: 34
45060407 GAGACTTCGT
*
45060417 CACACTATCCTACTATCACTTTTGTACTTTTTAG
1 CACACTATCCTACTATCACTTTGGTACTTTTTAG
45060451 CACACTATCCTACTATCACTTTGGTACTTTT
1 CACACTATCCTACTATCACTTTGGTACTTTT
45060482 GAGATTATGT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 30 1.00
ACGTcount: A:0.23, C:0.28, G:0.06, T:0.43
Consensus pattern (34 bp):
CACACTATCCTACTATCACTTTGGTACTTTTTAG
Found at i:45075375 original size:11 final size:11
Alignment explanation
Indices: 45075354--45075383 Score: 51
Period size: 11 Copynumber: 2.6 Consensus size: 11
45075344 CGAGCATATT
45075354 ATACAATTAAAC
1 ATAC-ATTAAAC
45075366 ATACATTAAAC
1 ATACATTAAAC
45075377 ATACATT
1 ATACATT
45075384 TTCAAATTTC
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 14 0.78
12 4 0.22
ACGTcount: A:0.53, C:0.17, G:0.00, T:0.30
Consensus pattern (11 bp):
ATACATTAAAC
Found at i:45088934 original size:40 final size:38
Alignment explanation
Indices: 45088850--45089070 Score: 259
Period size: 40 Copynumber: 5.7 Consensus size: 38
45088840 TTGAATGATG
* * *
45088850 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTA-A
* * *
45088890 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAA
1 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAA
45088929 TTCCGGGCTAAGCCCGAAGGCATTTGTGCGAG-TACTAA
1 -TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
45088967 TCCGGG-TAAGCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACT-AA
*
45089005 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
1 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTA-A
* *
45089045 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAG-CCCGAAGGCATTTG
45089071 AACGAGGAGC
Statistics
Matches: 162, Mismatches: 12, Indels: 14
0.86 0.06 0.07
Matches are distributed among these distances:
36 24 0.15
37 10 0.06
38 14 0.09
39 25 0.15
40 82 0.51
41 7 0.04
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (38 bp):
TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
Found at i:45094870 original size:27 final size:27
Alignment explanation
Indices: 45094840--45094971 Score: 156
Period size: 27 Copynumber: 4.9 Consensus size: 27
45094830 TAATTTGATG
* * *
45094840 AAATGACTATTTTACCCTTATGTGGTA
1 AAATGACTGTTTTGCCCTTATATGGTA
* * *
45094867 AAATGACTGGTTTGCCCGTATGTGGTA
1 AAATGACTGTTTTGCCCTTATATGGTA
*
45094894 GAATGACTGTTTTGCCCTTATATGGTA
1 AAATGACTGTTTTGCCCTTATATGGTA
* * * *
45094921 AAATGACTATATTGCCCTTATATGCTC
1 AAATGACTGTTTTGCCCTTATATGGTA
*
45094948 AAATGACTGTTTTGCCCCTATATG
1 AAATGACTGTTTTGCCCTTATATG
45094972 ATGTATGTTT
Statistics
Matches: 89, Mismatches: 16, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 89 1.00
ACGTcount: A:0.26, C:0.17, G:0.19, T:0.38
Consensus pattern (27 bp):
AAATGACTGTTTTGCCCTTATATGGTA
Found at i:45095269 original size:23 final size:24
Alignment explanation
Indices: 45095238--45095282 Score: 65
Period size: 23 Copynumber: 1.9 Consensus size: 24
45095228 ATATCCCCAC
*
45095238 ATGGAGTGTAG-GGTTGGATGGAG
1 ATGGAGTGTAGAGGCTGGATGGAG
*
45095261 ATGGTGTGTAGAGGCTGGATGG
1 ATGGAGTGTAGAGGCTGGATGG
45095283 GTAGGACTTG
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
23 10 0.53
24 9 0.47
ACGTcount: A:0.20, C:0.02, G:0.51, T:0.27
Consensus pattern (24 bp):
ATGGAGTGTAGAGGCTGGATGGAG
Found at i:45096688 original size:91 final size:92
Alignment explanation
Indices: 45096577--45096745 Score: 295
Period size: 91 Copynumber: 1.8 Consensus size: 92
45096567 CGCCCATAAG
* *
45096577 CGAACTCGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTC-GACTCAACTCAA
1 CGAACTCGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
45096641 CGAGTTCGGATGCCTAGTTACATTTCA
66 CGAGTTCGGATGCCTAGTTACATTTCA
* *
45096668 CGAACTGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 CGAACTCGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
45096733 CGAGTTCGGATGC
66 CGAGTTCGGATGC
45096746 TCAACCATCC
Statistics
Matches: 73, Mismatches: 4, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
91 48 0.66
92 25 0.34
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.22
Consensus pattern (92 bp):
CGAACTCGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATTTCA
Found at i:45096724 original size:46 final size:45
Alignment explanation
Indices: 45096570--45096742 Score: 183
Period size: 46 Copynumber: 3.8 Consensus size: 45
45096560 TGTAACCCGC
* * *
45096570 CCATAAGCGAACTCGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
45096615 CCATAAGTGAACTCGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
* * *
45096664 --TTCA-CGAACTGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGACTCAACTCAACGAGTTCGGACATTCGCAT
*
45096706 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTC-GACTCAACTCAACGAGTTCGGA
45096743 TGCTCAACCA
Statistics
Matches: 104, Mismatches: 14, Indels: 19
0.76 0.10 0.14
Matches are distributed among these distances:
41 2 0.02
42 4 0.04
43 1 0.01
44 2 0.02
45 38 0.37
46 49 0.47
47 2 0.02
48 1 0.01
49 3 0.03
50 2 0.02
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.21
Consensus pattern (45 bp):
CCATAAGCGAACTCGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:45102119 original size:24 final size:23
Alignment explanation
Indices: 45102083--45102128 Score: 56
Period size: 24 Copynumber: 2.0 Consensus size: 23
45102073 CATATTACCT
*
45102083 TGCTTCAGCTCAAGAAATTCTTTA
1 TGCTTCAGATCAAGAAA-TCTTTA
* *
45102107 TGCTTCTGATCAATAAATCTTT
1 TGCTTCAGATCAAGAAATCTTT
45102129 CACTAATATA
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
23 5 0.26
24 14 0.74
ACGTcount: A:0.28, C:0.20, G:0.11, T:0.41
Consensus pattern (23 bp):
TGCTTCAGATCAAGAAATCTTTA
Found at i:45104167 original size:46 final size:46
Alignment explanation
Indices: 45104100--45104270 Score: 190
Period size: 46 Copynumber: 3.8 Consensus size: 46
45104090 TGTAACCCGC
* *
45104100 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCAT
* * * ** *
45104146 CCATAAGTGAACTCGGACTCAACTCAACAAGATGCCTA-GTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAG-TTCGGACGTTCGCAT
* * *
45104191 --TTCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCAT
*
45104234 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
45104271 TGCTCAACCA
Statistics
Matches: 99, Mismatches: 20, Indels: 12
0.76 0.15 0.09
Matches are distributed among these distances:
41 3 0.03
42 24 0.24
43 5 0.05
45 5 0.05
46 61 0.62
47 1 0.01
ACGTcount: A:0.30, C:0.29, G:0.20, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCAT
Found at i:45104289 original size:46 final size:45
Alignment explanation
Indices: 45104196--45104281 Score: 129
Period size: 46 Copynumber: 1.9 Consensus size: 45
45104186 TACATTTCAC
* *
45104196 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGA-ATGCGCAACCATAAGT
*
45104242 GAACTCGGACTCAACTCAACGAGTTCGG-ATGCTCAACCAT
1 GAACTCGGACTCAACTCAACGAGTTCGGAATGCGCAACCAT
45104282 CCTAGTGACA
Statistics
Matches: 37, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
44 9 0.24
46 28 0.76
ACGTcount: A:0.30, C:0.29, G:0.20, T:0.21
Consensus pattern (45 bp):
GAACTCGGACTCAACTCAACGAGTTCGGAATGCGCAACCATAAGT
Found at i:45106900 original size:28 final size:28
Alignment explanation
Indices: 45106853--45106917 Score: 103
Period size: 28 Copynumber: 2.3 Consensus size: 28
45106843 AAATTAACCC
*
45106853 TAGGGGTATAAAGGTCATTTTGCATACA
1 TAGGGGTATAAAGGTAATTTTGCATACA
* *
45106881 TAGGGTTATAATGGTAATTTTGCATACA
1 TAGGGGTATAAAGGTAATTTTGCATACA
45106909 TAGGGGTAT
1 TAGGGGTAT
45106918 TCTAGTACAT
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 33 1.00
ACGTcount: A:0.31, C:0.08, G:0.26, T:0.35
Consensus pattern (28 bp):
TAGGGGTATAAAGGTAATTTTGCATACA
Found at i:45109391 original size:48 final size:48
Alignment explanation
Indices: 45109326--45109959 Score: 915
Period size: 48 Copynumber: 13.1 Consensus size: 48
45109316 GCTGAAATTG
*
45109326 ATGTATAAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
45109374 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
*
45109422 ATGTATGAGATATGTATATCTGGTAAAGCCGAATGGCTAATGTGAAAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
*
45109470 ATGTATGAGATAAGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
45109518 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
45109566 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
*
45109614 ATGTATGAGATAAGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG-AA-AT
* * *** * * *
45109664 ATGTGGTAAAGCCGA-ATGGCTA-ATGT-G-AAATATGTATGAGGT-ATGT-ATAT
1 A--T-GT-ATG-AGATAT-G-TATATGTGGTAAAGCCGAATG-GCTAATGTGAAAT
* * * *
45109714 GTGGTAAAGCCGA-ATG-GTATGTGGTAAAGCCGAATGGCTAATGTGAAAT
1 AT-GT-ATG-AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
*
45109763 ATGTATGAGATATGTATATGTGGTAAAGTCGAATGGCTAATGTGAAAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
*
45109811 ATGTATGAGATATGTATATGTGGTAAAACCGAATGGCTAATGTGAAAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
45109859 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
* *
45109907 ATGTATGAGATATGTATATGTTGTAAAGCCGAATGGCTAGTGTGAAAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
45109955 ATGTA
1 ATGTA
45109960 GGCGATGTGT
Statistics
Matches: 536, Mismatches: 33, Indels: 34
0.89 0.05 0.06
Matches are distributed among these distances:
46 6 0.01
47 9 0.02
48 480 0.90
49 6 0.01
50 5 0.01
51 1 0.00
52 1 0.00
53 13 0.02
54 6 0.01
55 7 0.01
56 2 0.00
ACGTcount: A:0.36, C:0.06, G:0.27, T:0.31
Consensus pattern (48 bp):
ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
Found at i:45109670 original size:33 final size:33
Alignment explanation
Indices: 45109628--45109696 Score: 138
Period size: 33 Copynumber: 2.1 Consensus size: 33
45109618 ATGAGATAAG
45109628 TATATGTGGTAAAGCCGAATGGCTAATGTGAAA
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAA
45109661 TATATGTGGTAAAGCCGAATGGCTAATGTGAAA
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAA
45109694 TAT
1 TAT
45109697 GTATGAGGTA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 36 1.00
ACGTcount: A:0.36, C:0.09, G:0.26, T:0.29
Consensus pattern (33 bp):
TATATGTGGTAAAGCCGAATGGCTAATGTGAAA
Found at i:45109675 original size:81 final size:81
Alignment explanation
Indices: 45109580--45109812 Score: 348
Period size: 81 Copynumber: 3.0 Consensus size: 81
45109570 ATGAGATATG
*
45109580 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATAAGTATATGTGGTAAAGCCG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCG
45109645 AATGGCTAATGTGAAA
66 AATGGCTAATGTGAAA
*
45109661 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGGTATGTATATGTGGTAAAGCCG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCG
45109726 AATGG-T-A--TG---
66 AATGGCTAATGTGAAA
*
45109735 ----TG-G-TAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGTCG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCG
45109794 AATGGCTAATGTGAAA
66 AATGGCTAATGTGAAA
45109810 TAT
1 TAT
45109813 GTATGAGATA
Statistics
Matches: 138, Mismatches: 4, Indels: 23
0.84 0.02 0.14
Matches are distributed among these distances:
68 59 0.43
69 2 0.01
70 3 0.02
72 2 0.01
77 2 0.01
79 1 0.01
80 1 0.01
81 68 0.49
ACGTcount: A:0.35, C:0.07, G:0.28, T:0.30
Consensus pattern (81 bp):
TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCG
AATGGCTAATGTGAAA
Found at i:45109736 original size:20 final size:20
Alignment explanation
Indices: 45109711--45109750 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
45109701 GAGGTATGTA
45109711 TATGTGGTAAAGCCGAATGG
1 TATGTGGTAAAGCCGAATGG
45109731 TATGTGGTAAAGCCGAATGG
1 TATGTGGTAAAGCCGAATGG
45109751 CTAATGTGAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.30, C:0.10, G:0.35, T:0.25
Consensus pattern (20 bp):
TATGTGGTAAAGCCGAATGG
Found at i:45109747 original size:68 final size:68
Alignment explanation
Indices: 45109663--45109798 Score: 254
Period size: 68 Copynumber: 2.0 Consensus size: 68
45109653 ATGTGAAATA
*
45109663 TATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGGTATGTATATGTGGTAAAGCCGAA
1 TATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAA
45109728 TGG
66 TGG
*
45109731 TATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGTCGAA
1 TATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAA
45109796 TGG
66 TGG
45109799 CTAATGTGAA
Statistics
Matches: 66, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
68 66 1.00
ACGTcount: A:0.33, C:0.07, G:0.30, T:0.30
Consensus pattern (68 bp):
TATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAA
TGG
Found at i:45110288 original size:37 final size:37
Alignment explanation
Indices: 45110109--45110287 Score: 304
Period size: 37 Copynumber: 4.8 Consensus size: 37
45110099 AATATATTCT
45110109 GGGTAAGACCCGATGACTACGTGTGGAGATTATGTCC
1 GGGTAAGACCCGATGACTACGTGTGGAGATTATGTCC
*
45110146 GGGTAAGACCCGATGACTACGTGTGGAGATTATGTCT
1 GGGTAAGACCCGATGACTACGTGTGGAGATTATGTCC
*
45110183 GGGTAAGACCCGATGACTACGTGTGGAGATTATGTCT
1 GGGTAAGACCCGATGACTACGTGTGGAGATTATGTCC
* *
45110220 GAGTAAGACCCGATGACTACGTGTGGAGATTTTGTCC
1 GGGTAAGACCCGATGACTACGTGTGGAGATTATGTCC
* *
45110257 GGGTAAGACCCGATAACTTCGTGTGGAGATT
1 GGGTAAGACCCGATGACTACGTGTGGAGATT
45110288 TCATCTGAGC
Statistics
Matches: 135, Mismatches: 7, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 135 1.00
ACGTcount: A:0.25, C:0.17, G:0.32, T:0.26
Consensus pattern (37 bp):
GGGTAAGACCCGATGACTACGTGTGGAGATTATGTCC
Found at i:45118594 original size:55 final size:56
Alignment explanation
Indices: 45118529--45118642 Score: 137
Period size: 55 Copynumber: 2.1 Consensus size: 56
45118519 AGCATGGCTG
* *
45118529 CCAAATACAGA-AAATGTGAC-AGAGTCACCAGATACAGATATTTTGTGGCAGT-GCCA
1 CCAAATACAGATAAATGTGACAAG-GCCACCAGA-ACAGATAATTTGTGGCA-TAGCCA
* *
45118585 CCAAA-ACAGATATATGTGGCAAGGCCACCAGAACAGATAATTTGTGGCATAGCCA
1 CCAAATACAGATAAATGTGACAAGGCCACCAGAACAGATAATTTGTGGCATAGCCA
45118640 CCA
1 CCA
45118643 GGACGCTTCG
Statistics
Matches: 51, Mismatches: 4, Indels: 7
0.82 0.06 0.11
Matches are distributed among these distances:
54 1 0.02
55 28 0.55
56 20 0.39
57 2 0.04
ACGTcount: A:0.38, C:0.22, G:0.21, T:0.19
Consensus pattern (56 bp):
CCAAATACAGATAAATGTGACAAGGCCACCAGAACAGATAATTTGTGGCATAGCCA
Found at i:45118639 original size:28 final size:28
Alignment explanation
Indices: 45118554--45118643 Score: 105
Period size: 28 Copynumber: 3.2 Consensus size: 28
45118544 GTGACAGAGT
*
45118554 CACCAGATACAGATATTTTGTGGCAGT-GC
1 CACCAGA-ACAGATAATTTGTGGCA-TAGC
* *
45118583 CACCAAAACAGAT-ATATGTGGCA-AGGC
1 CACCAGAACAGATAATTTGTGGCATA-GC
45118610 CACCAGAACAGATAATTTGTGGCATAGC
1 CACCAGAACAGATAATTTGTGGCATAGC
45118638 CACCAG
1 CACCAG
45118644 GACGCTTCGT
Statistics
Matches: 52, Mismatches: 5, Indels: 9
0.79 0.08 0.14
Matches are distributed among these distances:
27 22 0.42
28 23 0.44
29 7 0.13
ACGTcount: A:0.34, C:0.23, G:0.22, T:0.20
Consensus pattern (28 bp):
CACCAGAACAGATAATTTGTGGCATAGC
Found at i:45118796 original size:28 final size:28
Alignment explanation
Indices: 45118749--45118813 Score: 112
Period size: 28 Copynumber: 2.3 Consensus size: 28
45118739 AAATTAACCC
*
45118749 TAGGGGTATAAAGGTCATTTTGCATACA
1 TAGGGGTATAAAGGTAATTTTGCATACA
*
45118777 TAGGGGTATAATGGTAATTTTGCATACA
1 TAGGGGTATAAAGGTAATTTTGCATACA
45118805 TAGGGGTAT
1 TAGGGGTAT
45118814 TCTAGTACAT
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
28 35 1.00
ACGTcount: A:0.31, C:0.08, G:0.28, T:0.34
Consensus pattern (28 bp):
TAGGGGTATAAAGGTAATTTTGCATACA
Found at i:45129250 original size:22 final size:21
Alignment explanation
Indices: 45129194--45129330 Score: 94
Period size: 23 Copynumber: 6.0 Consensus size: 21
45129184 CTGAGCTGAC
*
45129194 GAACAGTAAGCTATAATGAGCT
1 GAACAGTAAGCTCT-ATGAGCT
* *
45129216 GAAACGGTAAGCTCTGTCGAGCT
1 G-AACAGTAAGCTCTAT-GAGCT
45129239 GAACAGTAAGCTCTATTGAGCT
1 GAACAGTAAGCTCTA-TGAGCT
* *
45129261 GAACAATAAGCTCATACGAGCT
1 GAACAGTAAGCTC-TATGAGCT
* * * *
45129283 AAAACGGTAAGCTCAAACGAGCT
1 -GAACAGTAAGCTC-TATGAGCT
*
45129306 GAGAACAGTAAGCTTATATGAGCT
1 --GAACAGTAAGC-TCTATGAGCT
45129330 G
1 G
45129331 TGGTGAGTCC
Statistics
Matches: 92, Mismatches: 16, Indels: 14
0.75 0.13 0.11
Matches are distributed among these distances:
22 37 0.40
23 38 0.41
24 16 0.17
25 1 0.01
ACGTcount: A:0.36, C:0.18, G:0.24, T:0.21
Consensus pattern (21 bp):
GAACAGTAAGCTCTATGAGCT
Found at i:45129288 original size:67 final size:68
Alignment explanation
Indices: 45129194--45129330 Score: 172
Period size: 67 Copynumber: 2.0 Consensus size: 68
45129184 CTGAGCTGAC
* * * ***
45129194 GAACAGTAAGCTATAATGAGCTGAAACGGTAAGCTCTGTCGAGCT-GAACAGTAAGCTCTAT-TG
1 GAACAATAAGCTATAACGAGCTAAAACGGTAAGCTCAAACGAGCTAGAACAGTAAGCT-TATATG
45129257 AGCT
65 AGCT
45129261 GAACAATAAGCTCAT-ACGAGCTAAAACGGTAAGCTCAAACGAGCTGAGAACAGTAAGCTTATAT
1 GAACAATAAGCT-ATAACGAGCTAAAACGGTAAGCTCAAACGAGCT-AGAACAGTAAGCTTATAT
45129325 GAGCT
64 GAGCT
45129330 G
1 G
45129331 TGGTGAGTCC
Statistics
Matches: 60, Mismatches: 6, Indels: 6
0.83 0.08 0.08
Matches are distributed among these distances:
67 36 0.60
68 5 0.08
69 19 0.32
ACGTcount: A:0.36, C:0.18, G:0.24, T:0.21
Consensus pattern (68 bp):
GAACAATAAGCTATAACGAGCTAAAACGGTAAGCTCAAACGAGCTAGAACAGTAAGCTTATATGA
GCT
Found at i:45136575 original size:28 final size:28
Alignment explanation
Indices: 45136535--45136688 Score: 274
Period size: 28 Copynumber: 5.5 Consensus size: 28
45136525 TAAATTGTAC
45136535 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
45136563 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
45136591 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
*
45136619 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
*
45136647 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
*
45136674 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
45136689 GACTTAATAT
Statistics
Matches: 124, Mismatches: 2, Indels: 1
0.98 0.02 0.01
Matches are distributed among these distances:
27 24 0.19
28 100 0.81
ACGTcount: A:0.26, C:0.12, G:0.29, T:0.34
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATTATGT
Found at i:45136601 original size:56 final size:56
Alignment explanation
Indices: 45136510--45136688 Score: 279
Period size: 56 Copynumber: 3.2 Consensus size: 56
45136500 GAGATTGGCG
* * * *
45136510 CTAAGTGTGCGGGTTTAAATTGTACAGCACTAAGTGTGCGAGTTTGATTATGTAGCA
1 CTAAGTGTGCGAGTTT-GATTATATAGCACTAAGTGTGCGAGTTTGATTATGTAGCA
*
45136567 CTAAGTGTGCGAGTTTGATTATGTAGCACTAAGTGTGCGAGTTTGATTATGTAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCACTAAGTGTGCGAGTTTGATTATGTAGCA
*
45136623 CTAAGTGTGCGAGTTTGATTATATAGCACTAAGTGTGCGAG-TTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCACTAAGTGTGCGAGTTTGATTATGTAGCA
*
45136678 CTGAGTGTGCG
1 CTAAGTGTGCG
45136689 GACTTAATAT
Statistics
Matches: 114, Mismatches: 8, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
55 23 0.20
56 76 0.67
57 15 0.13
ACGTcount: A:0.26, C:0.12, G:0.28, T:0.34
Consensus pattern (56 bp):
CTAAGTGTGCGAGTTTGATTATATAGCACTAAGTGTGCGAGTTTGATTATGTAGCA
Found at i:45144822 original size:27 final size:28
Alignment explanation
Indices: 45144737--45144834 Score: 171
Period size: 28 Copynumber: 3.5 Consensus size: 28
45144727 TAAATTGTAC
45144737 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
45144765 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
*
45144793 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
*
45144820 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
45144835 GACTTAATAT
Statistics
Matches: 68, Mismatches: 2, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
27 23 0.34
28 45 0.66
ACGTcount: A:0.26, C:0.12, G:0.30, T:0.33
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATTATGT
Found at i:45144845 original size:27 final size:27
Alignment explanation
Indices: 45144737--45144847 Score: 107
Period size: 28 Copynumber: 4.0 Consensus size: 27
45144727 TAAATTGTAC
* * *
45144737 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGA-CTTGAATATAT
* * *
45144765 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGA-CTTGAATATAT
* *
45144793 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGACTTGAATATAT
*
45144820 AGCACTGAGTGTGCGGACTT-AATATAT
1 AGCACTAAGTGTGC-GACTTGAATATAT
45144847 A
1 A
45144848 CTTTTGAATC
Statistics
Matches: 77, Mismatches: 5, Indels: 3
0.91 0.06 0.04
Matches are distributed among these distances:
27 29 0.38
28 48 0.62
ACGTcount: A:0.28, C:0.12, G:0.27, T:0.33
Consensus pattern (27 bp):
AGCACTAAGTGTGCGACTTGAATATAT
Found at i:45150840 original size:17 final size:18
Alignment explanation
Indices: 45150818--45150853 Score: 56
Period size: 17 Copynumber: 2.0 Consensus size: 18
45150808 TTACACAATC
45150818 TGAAGACAC-GGGCGTGT
1 TGAAGACACAGGGCGTGT
45150835 TGAAGACACATGGGCGTGT
1 TGAAGACACA-GGGCGTGT
45150854 CCCTGTGTCT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 9 0.53
19 8 0.47
ACGTcount: A:0.25, C:0.17, G:0.39, T:0.19
Consensus pattern (18 bp):
TGAAGACACAGGGCGTGT
Found at i:45152710 original size:42 final size:42
Alignment explanation
Indices: 45152555--45152712 Score: 163
Period size: 42 Copynumber: 3.7 Consensus size: 42
45152545 AAGTCGTACA
* * * *
45152555 ATGCCATATCCCATATATGGTCGTACATGTAATCTCATATCG
1 ATGCCATATCCCAGATATGGTCTTACACGTAATATCATATCG
* * * ** * **
45152597 ATGCCAATAGCCTAGCTATGGTCTTACACAAAATTTTGTATCG
1 ATGCC-ATATCCCAGATATGGTCTTACACGTAATATCATATCG
* * *
45152640 ATGCCATGTCCCAGACATGGTCTTACACGTAATATCATACCG
1 ATGCCATATCCCAGATATGGTCTTACACGTAATATCATATCG
*
45152682 ATGCCATATCCAAGATATGGTCTTACACGTA
1 ATGCCATATCCCAGATATGGTCTTACACGTA
45152713 TTCTCATCTT
Statistics
Matches: 90, Mismatches: 25, Indels: 2
0.77 0.21 0.02
Matches are distributed among these distances:
42 59 0.66
43 31 0.34
ACGTcount: A:0.30, C:0.24, G:0.16, T:0.30
Consensus pattern (42 bp):
ATGCCATATCCCAGATATGGTCTTACACGTAATATCATATCG
Found at i:45156455 original size:51 final size:47
Alignment explanation
Indices: 45156400--45156542 Score: 127
Period size: 51 Copynumber: 3.0 Consensus size: 47
45156390 CTACCACATA
*
45156400 ACATGTAACACATCCATAATGAACTCGGAACTCTCAACGAGCTCGGATG
1 ACATGTAA-GCATCCATAATGAACTC-GAACTCTCAACGAGCTCGGATG
* ** *
45156449 TTACATGAAATGCATCCACCATAAACTC-AGACTTCTCAACGAGCTCGGATG
1 --ACATGTAA-GCATCCATAATGAACTCGA-AC-TCTCAACGAGCTCGGATG
45156500 -C-T-T--GCATCCATAATGAACTCGAACCTCTCAACGAGCTCGGATG
1 ACATGTAAGCATCCATAATGAACTCGAA-CTCTCAACGAGCTCGGATG
45156543 CCACATATCT
Statistics
Matches: 78, Mismatches: 10, Indels: 16
0.75 0.10 0.15
Matches are distributed among these distances:
43 33 0.42
44 2 0.03
47 1 0.01
48 1 0.01
49 1 0.01
50 2 0.03
51 38 0.49
ACGTcount: A:0.32, C:0.28, G:0.17, T:0.22
Consensus pattern (47 bp):
ACATGTAAGCATCCATAATGAACTCGAACTCTCAACGAGCTCGGATG
Found at i:45156507 original size:43 final size:43
Alignment explanation
Indices: 45156459--45156543 Score: 118
Period size: 43 Copynumber: 2.0 Consensus size: 43
45156449 TTACATGAAA
* *
45156459 TGCATCCACCATAAACTC-AGACTTCTCAACGAGCTCGGATGCT
1 TGCATCCACAATAAACTCGA-ACCTCTCAACGAGCTCGGATGCT
* *
45156502 TGCATCCATAATGAACTCGAACCTCTCAACGAGCTCGGATGC
1 TGCATCCACAATAAACTCGAACCTCTCAACGAGCTCGGATGC
45156544 CACATATCTC
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
43 36 0.97
44 1 0.03
ACGTcount: A:0.28, C:0.32, G:0.18, T:0.22
Consensus pattern (43 bp):
TGCATCCACAATAAACTCGAACCTCTCAACGAGCTCGGATGCT
Found at i:45164411 original size:43 final size:43
Alignment explanation
Indices: 45164350--45164431 Score: 146
Period size: 43 Copynumber: 1.9 Consensus size: 43
45164340 ACATGTAACT
45164350 CATCCATAACGAACTCAGACCTCTCAACGAGCTCGGATGGTTA
1 CATCCATAACGAACTCAGACCTCTCAACGAGCTCGGATGGTTA
* *
45164393 CATCCATAATGAACTCAGACCTCTCAGCGAGCTCGGATG
1 CATCCATAACGAACTCAGACCTCTCAACGAGCTCGGATG
45164432 CCACATGTCG
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
43 37 1.00
ACGTcount: A:0.29, C:0.30, G:0.20, T:0.21
Consensus pattern (43 bp):
CATCCATAACGAACTCAGACCTCTCAACGAGCTCGGATGGTTA
Found at i:45168946 original size:24 final size:24
Alignment explanation
Indices: 45168912--45168957 Score: 74
Period size: 24 Copynumber: 1.9 Consensus size: 24
45168902 ATTCATGCCA
*
45168912 CAAAATATACCAATTCATCATCAT
1 CAAAATATACCAACTCATCATCAT
*
45168936 CAAAATGTACCAACTCATCATC
1 CAAAATATACCAACTCATCATC
45168958 CTTATACCAT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.43, C:0.28, G:0.02, T:0.26
Consensus pattern (24 bp):
CAAAATATACCAACTCATCATCAT
Found at i:45169937 original size:42 final size:42
Alignment explanation
Indices: 45169890--45170054 Score: 172
Period size: 42 Copynumber: 3.9 Consensus size: 42
45169880 AAGTCCTAAA
*
45169890 ATGCCATATCCCAGATGTGGTCTTACATATAATCTCATATCG
1 ATGCCATATCCCAGATATGGTCTTACATATAATCTCATATCG
* * * **
45169932 ATGCCAATAGCCCAGCTATGGTCTTACATGA-AATTTTGTATCG
1 ATGCC-ATATCCCAGATATGGTCTTACAT-ATAATCTCATATCG
* * *
45169975 ATGCCATGTCCCAGACATGGTCTTACATATAATATCATA-CTG
1 ATGCCATATCCCAGATATGGTCTTACATATAATCTCATATC-G
* * * *
45170017 ATACCATATCCCAGATAAGGTCTTACATGTATTCTCAT
1 ATGCCATATCCCAGATATGGTCTTACATATAATCTCAT
45170055 CTCAGTAACC
Statistics
Matches: 99, Mismatches: 20, Indels: 8
0.78 0.16 0.06
Matches are distributed among these distances:
41 2 0.02
42 62 0.63
43 34 0.34
44 1 0.01
ACGTcount: A:0.30, C:0.23, G:0.15, T:0.33
Consensus pattern (42 bp):
ATGCCATATCCCAGATATGGTCTTACATATAATCTCATATCG
Found at i:45170245 original size:22 final size:22
Alignment explanation
Indices: 45170192--45170235 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
45170182 AATAATAAAT
*
45170192 AAGCATTTATAACACAATTTAA
1 AAGCATTTATAACACAATCTAA
45170214 AAGCATTTATAACACAATCTAA
1 AAGCATTTATAACACAATCTAA
45170236 GTACATTTAT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.50, C:0.16, G:0.05, T:0.30
Consensus pattern (22 bp):
AAGCATTTATAACACAATCTAA
Found at i:45172594 original size:54 final size:54
Alignment explanation
Indices: 45172511--45172617 Score: 162
Period size: 54 Copynumber: 2.0 Consensus size: 54
45172501 CAGGATTACC
* *
45172511 AGTATAAACTCATAGAACAATGTCAGGATTA-CTAGTCTAGGCTAAATCCCCTGT
1 AGTATAAACTCATAGAACAATGTCAGGATTATC-AATCCAGGCTAAATCCCCTGT
* *
45172565 AGTATAAACTCATAGAGCAATGTCGGGATTATCAATCCAGGCTAAATCCCCTG
1 AGTATAAACTCATAGAACAATGTCAGGATTATCAATCCAGGCTAAATCCCCTG
45172618 CAACGAGAAT
Statistics
Matches: 48, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
54 47 0.98
55 1 0.02
ACGTcount: A:0.35, C:0.21, G:0.18, T:0.26
Consensus pattern (54 bp):
AGTATAAACTCATAGAACAATGTCAGGATTATCAATCCAGGCTAAATCCCCTGT
Found at i:45175553 original size:15 final size:15
Alignment explanation
Indices: 45175535--45175564 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
45175525 ACCAGAATAA
45175535 AGAAATCCAAGATAT
1 AGAAATCCAAGATAT
45175550 AGAAATCCAAGATAT
1 AGAAATCCAAGATAT
45175565 CATATCAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.53, C:0.13, G:0.13, T:0.20
Consensus pattern (15 bp):
AGAAATCCAAGATAT
Found at i:45178471 original size:38 final size:38
Alignment explanation
Indices: 45178420--45178519 Score: 148
Period size: 38 Copynumber: 2.6 Consensus size: 38
45178410 ATGGAAAAAC
45178420 GTGGTGCTAAGTGGATATACCACGGTTATACGTG-TAA
1 GTGGTGCTAAGTGGATATACCACGGTTATACGTGTTAA
* * *
45178457 TGTGGTGCTAAGTGGATATACGACAGTTATATGTGTTAA
1 -GTGGTGCTAAGTGGATATACCACGGTTATACGTGTTAA
*
45178496 GTGGTGTTAAGTGGATATACCACG
1 GTGGTGCTAAGTGGATATACCACG
45178520 ATTACACATA
Statistics
Matches: 55, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
38 52 0.95
39 3 0.05
ACGTcount: A:0.27, C:0.11, G:0.30, T:0.32
Consensus pattern (38 bp):
GTGGTGCTAAGTGGATATACCACGGTTATACGTGTTAA
Found at i:45178608 original size:47 final size:48
Alignment explanation
Indices: 45178503--45178611 Score: 159
Period size: 48 Copynumber: 2.3 Consensus size: 48
45178493 TAAGTGGTGT
*
45178503 TAAGTGGATATACCACGATTACACATATTGATACATTTAACGTGCTGC
1 TAAGTGGATATGCCACGATTACACATATTGATACATTTAACGTGCTGC
* * *
45178551 TAAGTGGATATGCCATGATTACATATATTGATTCA-TTAACGTTG-TGC
1 TAAGTGGATATGCCACGATTACACATATTGATACATTTAACG-TGCTGC
45178598 TAAGTGGATATGCC
1 TAAGTGGATATGCC
45178612 GCAGTTATAC
Statistics
Matches: 56, Mismatches: 4, Indels: 3
0.89 0.06 0.05
Matches are distributed among these distances:
47 23 0.41
48 33 0.59
ACGTcount: A:0.31, C:0.16, G:0.19, T:0.34
Consensus pattern (48 bp):
TAAGTGGATATGCCACGATTACACATATTGATACATTTAACGTGCTGC
Found at i:45180792 original size:27 final size:26
Alignment explanation
Indices: 45180754--45180841 Score: 140
Period size: 27 Copynumber: 3.3 Consensus size: 26
45180744 ATGGAGGAAG
45180754 TGTTCTGGTGGCTCTGCCACAAATATC
1 TGTTCTGGTGGCTCTGCCAC-AATATC
45180781 TGTTCTGGTGGCTCTGCCACAATATC
1 TGTTCTGGTGGCTCTGCCACAATATC
* *
45180807 TGTATCTGGTGACTCTGTCACAATATC
1 TGT-TCTGGTGGCTCTGCCACAATATC
45180834 TGTTCTGG
1 TGTTCTGG
45180842 CAGCCATGCT
Statistics
Matches: 58, Mismatches: 2, Indels: 3
0.92 0.03 0.05
Matches are distributed among these distances:
26 14 0.24
27 44 0.76
ACGTcount: A:0.17, C:0.24, G:0.23, T:0.36
Consensus pattern (26 bp):
TGTTCTGGTGGCTCTGCCACAATATC
Found at i:45194144 original size:27 final size:27
Alignment explanation
Indices: 45194114--45194324 Score: 287
Period size: 27 Copynumber: 7.8 Consensus size: 27
45194104 ATTACCAAAG
45194114 TACCCTCGATTTATAGAATTACCATTT
1 TACCCTCGATTTATAGAATTACCATTT
*
45194141 TACCCTCGATTTATAGAATTACCGTTT
1 TACCCTCGATTTATAGAATTACCATTT
* * * **
45194168 TACCCTCAATTTACAAAATTACTGTTT
1 TACCCTCGATTTATAGAATTACCATTT
45194195 TACCCTCGATTTATAGAATTACCATTT
1 TACCCTCGATTTATAGAATTACCATTT
* *
45194222 TACCCTCAATTTATAGAATTATCATTT
1 TACCCTCGATTTATAGAATTACCATTT
* * *
45194249 CACCCTCGATTTACAGAATTACCGTTT
1 TACCCTCGATTTATAGAATTACCATTT
*
45194276 TACCCTCGATTTATAGAATTCCCATTT
1 TACCCTCGATTTATAGAATTACCATTT
* * *
45194303 TACCCTTGATTTACAAAATTAC
1 TACCCTCGATTTATAGAATTAC
45194325 TAAAATACCC
Statistics
Matches: 159, Mismatches: 25, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 159 1.00
ACGTcount: A:0.30, C:0.23, G:0.07, T:0.40
Consensus pattern (27 bp):
TACCCTCGATTTATAGAATTACCATTT
Found at i:45194211 original size:81 final size:81
Alignment explanation
Indices: 45194114--45194324 Score: 323
Period size: 81 Copynumber: 2.6 Consensus size: 81
45194104 ATTACCAAAG
* *
45194114 TACCCTCGATTTATAGAATTACCATTTTACCCTCGATTTATAGAATTACCGTTTTACCCTCAATT
1 TACCCTCGATTTATAGAATTACCATTTTACCCTCGATTTATAGAATTACCATTTCACCCTCAATT
*
45194179 TACAAAATTACTGTTT
66 TACAAAATTACCGTTT
* * *
45194195 TACCCTCGATTTATAGAATTACCATTTTACCCTCAATTTATAGAATTATCATTTCACCCTCGATT
1 TACCCTCGATTTATAGAATTACCATTTTACCCTCGATTTATAGAATTACCATTTCACCCTCAATT
*
45194260 TACAGAATTACCGTTT
66 TACAAAATTACCGTTT
* * * *
45194276 TACCCTCGATTTATAGAATTCCCATTTTACCCTTGATTTACAAAATTAC
1 TACCCTCGATTTATAGAATTACCATTTTACCCTCGATTTATAGAATTAC
45194325 TAAAATACCC
Statistics
Matches: 117, Mismatches: 13, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
81 117 1.00
ACGTcount: A:0.30, C:0.23, G:0.07, T:0.40
Consensus pattern (81 bp):
TACCCTCGATTTATAGAATTACCATTTTACCCTCGATTTATAGAATTACCATTTCACCCTCAATT
TACAAAATTACCGTTT
Found at i:45194333 original size:27 final size:27
Alignment explanation
Indices: 45194312--45194444 Score: 176
Period size: 27 Copynumber: 4.9 Consensus size: 27
45194302 TTACCCTTGA
* * *
45194312 TTTACAAAATTACTAAAATACCCTTGG
1 TTTACAAAATTACCAAAATACCCCTAG
45194339 TTTACAAAATTACCAAAATACCCCTAG
1 TTTACAAAATTACCAAAATACCCCTAG
**
45194366 TTTGTAAAATTACCAAAATACCCCTAG
1 TTTACAAAATTACCAAAATACCCCTAG
**
45194393 TTTGTAAAATTACCAAAATACCCCTAG
1 TTTACAAAATTACCAAAATACCCCTAG
* **
45194420 CTTATTAAATTACCAAAATACCCCT
1 TTTACAAAATTACCAAAATACCCCT
45194445 GATTTGTGAA
Statistics
Matches: 98, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 98 1.00
ACGTcount: A:0.41, C:0.23, G:0.05, T:0.30
Consensus pattern (27 bp):
TTTACAAAATTACCAAAATACCCCTAG
Found at i:45194335 original size:81 final size:81
Alignment explanation
Indices: 45194114--45194352 Score: 318
Period size: 81 Copynumber: 3.0 Consensus size: 81
45194104 ATTACCAAAG
*** *
45194114 TACCCTCGATTTATAGAATTACCATTTTACCCTCGATTTATAGAATTACCGTTTTACCCTCAATT
1 TACCCTCGATTTATAGAATTACCATTTTACCCTCGATTTATAGAATTACTAATTTACCCTCGATT
*
45194179 TACAAAATTACTGTTT
66 TACAAAATTACCGTTT
* *
45194195 TACCCTCGATTTATAGAATTACCATTTTACCCTCAATTTATAGAATTA-TCATTTCACCCTCGAT
1 TACCCTCGATTTATAGAATTACCATTTTACCCTCGATTTATAGAATTACTAATTT-ACCCTCGAT
*
45194259 TTACAGAATTACCGTTT
65 TTACAAAATTACCGTTT
* * * * ** * *
45194276 TACCCTCGATTTATAGAATTCCCATTTTACCCTTGATTTACAAAATTACTAAAATACCCTTGGTT
1 TACCCTCGATTTATAGAATTACCATTTTACCCTCGATTTATAGAATTACTAATTTACCCTCGATT
45194341 TACAAAATTACC
66 TACAAAATTACC
45194353 AAAATACCCC
Statistics
Matches: 138, Mismatches: 18, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
80 3 0.02
81 132 0.96
82 3 0.02
ACGTcount: A:0.31, C:0.23, G:0.07, T:0.39
Consensus pattern (81 bp):
TACCCTCGATTTATAGAATTACCATTTTACCCTCGATTTATAGAATTACTAATTTACCCTCGATT
TACAAAATTACCGTTT
Found at i:45194456 original size:27 final size:27
Alignment explanation
Indices: 45194303--45194552 Score: 174
Period size: 27 Copynumber: 9.3 Consensus size: 27
45194293 ATTCCCATTT
* ** *
45194303 TACCCTTGATTTACAAAATTACTAAAA
1 TACCCCTGATTTGTAAAATTACCAAAA
* * **
45194330 TACCCTTGGTTTACAAAATTACCAAAA
1 TACCCCTGATTTGTAAAATTACCAAAA
45194357 TACCCCT-AGTTTGTAAAATTACCAAAA
1 TACCCCTGA-TTTGTAAAATTACCAAAA
45194384 TACCCCT-AGTTTGTAAAATTACCAAAA
1 TACCCCTGA-TTTGTAAAATTACCAAAA
*
45194411 TACCCCTAGCTTAT-T-AAATTACCAAAA
1 TACCCCT-GATT-TGTAAAATTACCAAAA
* * *
45194438 TACCCCTGATTTGTGAAATTATCGAAA
1 TACCCCTGATTTGTAAAATTACCAAAA
* * *
45194465 TA-CTCTCGATTTGTAAAA-TATCGAAA
1 TACCCCT-GATTTGTAAAATTACCAAAA
** * *
45194491 TACCCCTG-TAGGGTAGAATTACCGAAA
1 TACCCCTGAT-TTGTAAAATTACCAAAA
* ** *
45194518 TACCCATG-TAGGGTAGAATTACCAAAA
1 TACCCCTGAT-TTGTAAAATTACCAAAA
45194545 TACCCCTG
1 TACCCCTG
45194553 TAAGGTAGAA
Statistics
Matches: 193, Mismatches: 20, Indels: 20
0.83 0.09 0.09
Matches are distributed among these distances:
25 2 0.01
26 23 0.12
27 164 0.85
28 3 0.02
29 1 0.01
ACGTcount: A:0.38, C:0.22, G:0.11, T:0.29
Consensus pattern (27 bp):
TACCCCTGATTTGTAAAATTACCAAAA
Found at i:45194478 original size:81 final size:81
Alignment explanation
Indices: 45194317--45194497 Score: 206
Period size: 81 Copynumber: 2.2 Consensus size: 81
45194307 CTTGATTTAC
* * * *
45194317 AAAATTACTAAAATACCCTTGGTTTACAAAATTACCAAAATACCCCTAGTTTGTAAAATTACCAA
1 AAAATTACCAAAATACCCCTAGCTTACAAAATTACCAAAATACCCCTAGTTTGTAAAATTACCAA
*
45194382 AATACCCCTAGTTTGT
66 AATACCCCGAGTTTGT
** * * *
45194398 AAAATTACCAAAATACCCCTAGCTTATTAAATTACCAAAATACCCCT-GATTTGTGAAATTATCG
1 AAAATTACCAAAATACCCCTAGCTTACAAAATTACCAAAATACCCCTAG-TTTGTAAAATTACCA
*
45194462 AAATACTCTCGA-TTTGT
65 AAATAC-CCCGAGTTTGT
* *
45194479 AAAA-TATCGAAATACCCCT
1 AAAATTACCAAAATACCCCT
45194498 GTAGGGTAGA
Statistics
Matches: 85, Mismatches: 13, Indels: 5
0.83 0.13 0.05
Matches are distributed among these distances:
80 14 0.16
81 68 0.80
82 3 0.04
ACGTcount: A:0.40, C:0.22, G:0.08, T:0.30
Consensus pattern (81 bp):
AAAATTACCAAAATACCCCTAGCTTACAAAATTACCAAAATACCCCTAGTTTGTAAAATTACCAA
AATACCCCGAGTTTGT
Found at i:45194554 original size:27 final size:27
Alignment explanation
Indices: 45194486--45194675 Score: 263
Period size: 27 Copynumber: 7.0 Consensus size: 27
45194476 TGTAAAATAT
45194486 CGAAATACCCCTGTAGGGTAGAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
*
45194513 CGAAATACCCATGTAGGGTAGAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
* *
45194540 CAAAATACCCCTGTAAGGTAGAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
*
45194567 TGAAATACCCCTGTAGGGTAGAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
* * *
45194594 CTAAATACCCTTGTAGGGTAGAAATAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
* *
45194621 CGTAATACCCCTATAGGGTAGAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
* * * *
45194648 CGAGATACCCTTGTGGGGTAAAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
45194675 C
1 C
45194676 ATTTTGCCCC
Statistics
Matches: 141, Mismatches: 22, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 141 1.00
ACGTcount: A:0.35, C:0.21, G:0.21, T:0.24
Consensus pattern (27 bp):
CGAAATACCCCTGTAGGGTAGAATTAC
Found at i:45194937 original size:24 final size:24
Alignment explanation
Indices: 45194905--45194951 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
45194895 CAATTTACCA
**
45194905 AAAAGGGCTTTGCCT-CAGTTATT
1 AAAAGGGCTAGGCCTCCAGTTATT
45194928 AAAAGAGGCTAGGCCTCCAGTTAT
1 AAAAG-GGCTAGGCCTCCAGTTAT
45194952 ATGATAAAGC
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 5 0.25
24 8 0.40
25 7 0.35
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (24 bp):
AAAAGGGCTAGGCCTCCAGTTATT
Found at i:45195959 original size:14 final size:15
Alignment explanation
Indices: 45195934--45195962 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
45195924 ATTTTCTGTG
45195934 TTTATAATGTGTGAA
1 TTTATAATGTGTGAA
45195949 TTTAT-ATGTGTGAA
1 TTTATAATGTGTGAA
45195963 ATATTCGTGT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 9 0.64
15 5 0.36
ACGTcount: A:0.31, C:0.00, G:0.21, T:0.48
Consensus pattern (15 bp):
TTTATAATGTGTGAA
Found at i:45196733 original size:15 final size:15
Alignment explanation
Indices: 45196713--45196745 Score: 66
Period size: 15 Copynumber: 2.2 Consensus size: 15
45196703 AAATGGTAAT
45196713 TTACCCATTTATGTG
1 TTACCCATTTATGTG
45196728 TTACCCATTTATGTG
1 TTACCCATTTATGTG
45196743 TTA
1 TTA
45196746 TTGGACTAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.21, C:0.18, G:0.12, T:0.48
Consensus pattern (15 bp):
TTACCCATTTATGTG
Found at i:45197158 original size:42 final size:43
Alignment explanation
Indices: 45197099--45197265 Score: 193
Period size: 42 Copynumber: 4.0 Consensus size: 43
45197089 AGGATTTCCG
* * *
45197099 ATATGTGTTTTCGTGTAAGACCACATCTGGGACGTTGGC-TCT
1 ATATGTGATTACGTGTAAGACCACGTCTGGGACGTTGGCATCT
* * *
45197141 ATATGTGATTACGTGTAAGACCATGTCTGGGACATCGGCATCGT
1 ATATGTGATTACGTGTAAGACCACGTCTGGGACGTTGGCATC-T
*
45197185 AT-T-TGATT-CGTGTAAGACC-CTGTCTGGGACAG-TGGCATCG
1 ATATGTGATTACGTGTAAGACCAC-GTCTGGGAC-GTTGGCATCT
*
45197225 ATATGTGATTACATGTAAGACCACGTCTGGGACGTTGGCAT
1 ATATGTGATTACGTGTAAGACCACGTCTGGGACGTTGGCAT
45197266 TGTACGATAT
Statistics
Matches: 105, Mismatches: 11, Indels: 17
0.79 0.08 0.13
Matches are distributed among these distances:
40 2 0.02
41 27 0.26
42 44 0.42
43 28 0.27
44 4 0.04
ACGTcount: A:0.23, C:0.19, G:0.28, T:0.31
Consensus pattern (43 bp):
ATATGTGATTACGTGTAAGACCACGTCTGGGACGTTGGCATCT
Found at i:45204471 original size:26 final size:26
Alignment explanation
Indices: 45204436--45204486 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
45204426 TCATACATCC
45204436 CATAAGGGCATAATAGTCACTTTACCT
1 CATAAGGGCATAATAGTCA-TTTACCT
45204463 CATAA-GGCATAATAGTCATTTACC
1 CATAAGGGCATAATAGTCATTTACC
45204487 AATATTGTGG
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
25 6 0.25
26 13 0.54
27 5 0.21
ACGTcount: A:0.35, C:0.22, G:0.14, T:0.29
Consensus pattern (26 bp):
CATAAGGGCATAATAGTCATTTACCT
Found at i:45237058 original size:29 final size:28
Alignment explanation
Indices: 45236978--45237070 Score: 89
Period size: 29 Copynumber: 3.2 Consensus size: 28
45236968 ATCCATACTT
* * * *
45236978 ATTCATTTGGCCCCTTTAGGCCTAATCTC
1 ATTCATATGG-CCCATTAGGCCCAATCAC
*
45237007 CTTCATATGGCCCATTAGGCCCAAATCAC
1 ATTCATATGGCCCATTAGGCCC-AATCAC
* *
45237036 TTTCATATGGCCCA-TCGGCCCCAATCAC
1 ATTCATATGGCCCATTAGG-CCCAATCAC
45237064 ATTCATA
1 ATTCATA
45237071 GTCATGCAAT
Statistics
Matches: 54, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
28 25 0.46
29 29 0.54
ACGTcount: A:0.24, C:0.33, G:0.13, T:0.30
Consensus pattern (28 bp):
ATTCATATGGCCCATTAGGCCCAATCAC
Found at i:45237068 original size:28 final size:29
Alignment explanation
Indices: 45237008--45237070 Score: 92
Period size: 28 Copynumber: 2.2 Consensus size: 29
45236998 CCTAATCTCC
*
45237008 TTCATATGGCCCATTAGGCCCAAATCACT
1 TTCATATGGCCCATTAGGCCCAAATCACA
* *
45237037 TTCATATGGCCCA-TCGGCCCCAATCACA
1 TTCATATGGCCCATTAGGCCCAAATCACA
45237065 TTCATA
1 TTCATA
45237071 GTCATGCAAT
Statistics
Matches: 31, Mismatches: 3, Indels: 1
0.89 0.09 0.03
Matches are distributed among these distances:
28 18 0.58
29 13 0.42
ACGTcount: A:0.27, C:0.33, G:0.13, T:0.27
Consensus pattern (29 bp):
TTCATATGGCCCATTAGGCCCAAATCACA
Found at i:45241598 original size:29 final size:28
Alignment explanation
Indices: 45241558--45241663 Score: 108
Period size: 28 Copynumber: 3.8 Consensus size: 28
45241548 TTTGGCCCCT
* *
45241558 TTAGGCCCAATCTCCTTCATATGGCCCA
1 TTAGGCCCAATCACATTCATATGGCCCA
* *
45241586 TTAGGCCCAAATCACTTTCATATGACCCA
1 TTAGGCCC-AATCACATTCATATGGCCCA
* *
45241615 -TCGACCCCAATCACATTCATATGGCCCA
1 TTAG-GCCCAATCACATTCATATGGCCCA
*
45241643 -TCGGCCCCAATCACATTCATA
1 TTAGG-CCCAATCACATTCATA
45241664 GTCATGCAAT
Statistics
Matches: 67, Mismatches: 8, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
28 47 0.70
29 20 0.30
ACGTcount: A:0.27, C:0.36, G:0.11, T:0.25
Consensus pattern (28 bp):
TTAGGCCCAATCACATTCATATGGCCCA
Found at i:45257357 original size:16 final size:16
Alignment explanation
Indices: 45257336--45257367 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
45257326 CACTTGAGTC
45257336 ATAGTCACTAAATTAT
1 ATAGTCACTAAATTAT
45257352 ATAGTCACTAAATTAT
1 ATAGTCACTAAATTAT
45257368 CTTGAGCTAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.44, C:0.12, G:0.06, T:0.38
Consensus pattern (16 bp):
ATAGTCACTAAATTAT
Found at i:45259030 original size:40 final size:40
Alignment explanation
Indices: 45258974--45259075 Score: 186
Period size: 40 Copynumber: 2.5 Consensus size: 40
45258964 TCGAGCTAAT
*
45258974 CACGGGCCTGCTCACACAAGCTAACAGTCTGGATGTAACTA
1 CACGGG-CTTCTCACACAAGCTAACAGTCTGGATGTAACTA
45259015 CACGGGCTTCTCACACAAGCTAACAGTCTGGATGTAACTA
1 CACGGGCTTCTCACACAAGCTAACAGTCTGGATGTAACTA
45259055 CACGGGCTTCTCACACAAGCT
1 CACGGGCTTCTCACACAAGCT
45259076 GACAAGTACC
Statistics
Matches: 60, Mismatches: 1, Indels: 1
0.97 0.02 0.02
Matches are distributed among these distances:
40 54 0.90
41 6 0.10
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (40 bp):
CACGGGCTTCTCACACAAGCTAACAGTCTGGATGTAACTA
Found at i:45262010 original size:43 final size:43
Alignment explanation
Indices: 45261937--45262130 Score: 257
Period size: 43 Copynumber: 4.5 Consensus size: 43
45261927 AATTAGTGGT
*
45261937 GCTTCTACAAAAAACGCCG-TAAAGAACAGGACCTTTAGCGGC
1 GCTTCTACAAAAAACGCCGCTAAAGACCAGGACCTTTAGCGGC
*
45261979 GCTTCTACAAAAAACACCGCTAAAGACCAGGACCTTTAGCGGC
1 GCTTCTACAAAAAACGCCGCTAAAGACCAGGACCTTTAGCGGC
* * *
45262022 GCTTCTTA-AAAAAATGCCGCTAAAGTCCAGGACCTTTAGCAGC
1 GCTTC-TACAAAAAACGCCGCTAAAGACCAGGACCTTTAGCGGC
* * *
45262065 GCTTCTTCAAAAAACGCCGCTAAAGACCAGGATCTTTAGCGGA
1 GCTTCTACAAAAAACGCCGCTAAAGACCAGGACCTTTAGCGGC
* * **
45262108 ACTTTTTTAAAAAACGCCGCTAA
1 GCTTCTACAAAAAACGCCGCTAA
45262131 TTTGCCCAGT
Statistics
Matches: 134, Mismatches: 15, Indels: 5
0.87 0.10 0.03
Matches are distributed among these distances:
42 19 0.14
43 113 0.84
44 2 0.01
ACGTcount: A:0.35, C:0.26, G:0.19, T:0.21
Consensus pattern (43 bp):
GCTTCTACAAAAAACGCCGCTAAAGACCAGGACCTTTAGCGGC
Found at i:45262454 original size:21 final size:21
Alignment explanation
Indices: 45262428--45262468 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
45262418 GTTCAGCTCC
45262428 GCCTCCCTCGCTGCTGCCTCT
1 GCCTCCCTCGCTGCTGCCTCT
*
45262449 GCCTCCCTCGTTGCTGCCTC
1 GCCTCCCTCGCTGCTGCCTC
45262469 CGCTCTAAGT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.00, C:0.51, G:0.20, T:0.29
Consensus pattern (21 bp):
GCCTCCCTCGCTGCTGCCTCT
Found at i:45268031 original size:9 final size:9
Alignment explanation
Indices: 45268017--45268087 Score: 61
Period size: 9 Copynumber: 7.6 Consensus size: 9
45268007 ATGTATTAGT
45268017 TAAGTTATG
1 TAAGTTATG
45268026 TAAGTTGTTATG
1 TAA---GTTATG
*
45268038 TAAATTATG
1 TAAGTTATG
*
45268047 TAAGTTATA
1 TAAGTTATG
* *
45268056 TGAGTTATT
1 TAAGTTATG
45268065 TAAGTTATG
1 TAAGTTATG
* *
45268074 TAATTTATT
1 TAAGTTATG
45268083 TAAGT
1 TAAGT
45268088 AATGATCAAT
Statistics
Matches: 49, Mismatches: 10, Indels: 6
0.75 0.15 0.09
Matches are distributed among these distances:
9 40 0.82
12 9 0.18
ACGTcount: A:0.34, C:0.00, G:0.17, T:0.49
Consensus pattern (9 bp):
TAAGTTATG
Found at i:45268690 original size:241 final size:241
Alignment explanation
Indices: 45268267--45268753 Score: 929
Period size: 241 Copynumber: 2.0 Consensus size: 241
45268257 TTAAGGTTAT
45268267 ATAAATATTCAATAGTAAATGAGATCGATAGAACTTTTTCCAAGTCTTTTTGAATTTTTTAAGAT
1 ATAAATATTCAATAGTAAATGAGATCGATAGAACTTTTTCCAAGTCTTTTTGAATTTTTTAAGAT
45268332 TCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTACAGCTCGATATAAGGCA
66 TCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTACAGCTCGATATAAGGCA
45268397 ACCCGTCAAGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAATAAGGTTGGAGAGAA
131 ACCCGTCAAGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAATAAGGTTGGAGAGAA
45268462 GGTCAGCTATTGTTGTAATTTTAATGAACAAGCAAGCTACATGGTA
196 GGTCAGCTATTGTTGTAATTTTAATGAACAAGCAAGCTACATGGTA
* *
45268508 ATAAATATTCAATAGTAAATGAGCTCGATAGAACTTTTTTCAAGTCTTTTTGAATTTTTTAAGAT
1 ATAAATATTCAATAGTAAATGAGATCGATAGAACTTTTTCCAAGTCTTTTTGAATTTTTTAAGAT
45268573 TCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTACAGCTCGATATAAGGCA
66 TCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTACAGCTCGATATAAGGCA
*
45268638 ACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAATAAGGTTGGAGAGAA
131 ACCCGTCAAGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAATAAGGTTGGAGAGAA
* *
45268703 GGTCAGTTATTGTTGTAATTTTAATGGACAAGCAAGCTACATGGTA
196 GGTCAGCTATTGTTGTAATTTTAATGAACAAGCAAGCTACATGGTA
45268749 ATAAA
1 ATAAA
45268754 ATTAATTCAT
Statistics
Matches: 241, Mismatches: 5, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
241 241 1.00
ACGTcount: A:0.33, C:0.15, G:0.18, T:0.34
Consensus pattern (241 bp):
ATAAATATTCAATAGTAAATGAGATCGATAGAACTTTTTCCAAGTCTTTTTGAATTTTTTAAGAT
TCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTACAGCTCGATATAAGGCA
ACCCGTCAAGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAATAAGGTTGGAGAGAA
GGTCAGCTATTGTTGTAATTTTAATGAACAAGCAAGCTACATGGTA
Found at i:45272573 original size:47 final size:49
Alignment explanation
Indices: 45272500--45272720 Score: 179
Period size: 47 Copynumber: 4.6 Consensus size: 49
45272490 GGGTTATTGT
45272500 GAGCTAGTGTAAGACCATGTCT-GGACATGGCATCGGCATTGAGA-CGA
1 GAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGAGCGA
* * ** * *
45272547 GTGCTAGTGTAAGA-CATGTTTGGGACAT-GCATCGGCACAGATATGTGA
1 GAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGA-GCGA
* * *** *
45272595 GAGCTAGTGTAAGACCATGTCTGAGACATGGCATCGGCCTTGATTTCAA
1 GAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGAGCGA
* * * * *
45272644 TAG-TCAATGTAAGACCATGTCTGGGCCATGGCATCGAC-TTGA-TG-GA
1 GAGCT-AGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGAGCGA
* * *
45272690 TGAGCCAATGTAAAACCATGTCTGGGACATG
1 -GAGCTAGTGTAAGACCATGTCTGGGACATG
45272721 CTATTGGCAT
Statistics
Matches: 139, Mismatches: 27, Indels: 16
0.76 0.15 0.09
Matches are distributed among these distances:
46 19 0.14
47 45 0.32
48 20 0.14
49 44 0.32
50 11 0.08
ACGTcount: A:0.28, C:0.19, G:0.29, T:0.25
Consensus pattern (49 bp):
GAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGAGCGA
Found at i:45283931 original size:84 final size:83
Alignment explanation
Indices: 45283819--45284000 Score: 256
Period size: 84 Copynumber: 2.2 Consensus size: 83
45283809 CATGTTGGGT
* * * * *
45283819 GTGTGGCCTACACGGGCATTCCATATGGGCATGTGGGTTTTGGGCCAGGCCGTGTGAACCACAAG
1 GTGTGGCCTACACGAGCATTCCACATGGGCATGTGGGTTTTAGGCCAAGCCATGTGAACCACAAG
*
45283884 AGTAAGGCCAATCTGGAC
66 AATAAGGCCAATCTGGAC
* * **
45283902 GTGTAGGCCTACACGAGCATTCTACATGGGCATGTGGGTTTTAGGCCAAGCTATGTGGGCCACAA
1 GTGT-GGCCTACACGAGCATTCCACATGGGCATGTGGGTTTTAGGCCAAGCCATGTGAACCACAA
45283967 GAATAAGGCCAATCTGGAC
65 GAATAAGGCCAATCTGGAC
45283986 GTGTGGGCCTACACG
1 GTGT-GGCCTACACG
45284001 GGCTAAAGGC
Statistics
Matches: 87, Mismatches: 11, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
83 4 0.05
84 83 0.95
ACGTcount: A:0.23, C:0.23, G:0.32, T:0.22
Consensus pattern (83 bp):
GTGTGGCCTACACGAGCATTCCACATGGGCATGTGGGTTTTAGGCCAAGCCATGTGAACCACAAG
AATAAGGCCAATCTGGAC
Found at i:45293207 original size:40 final size:41
Alignment explanation
Indices: 45293133--45293223 Score: 121
Period size: 40 Copynumber: 2.2 Consensus size: 41
45293123 TAAATTCCAA
* * *
45293133 ATATAGCCAAAGCTATTTCGATCTCGCACACTAAGTGCCAT
1 ATATAACCAAAGCTATGTCGATATCGCACACTAAGTGCCAT
* *
45293174 ATATAACCGAAGCTATGTCGA-ATCGCACACTAAGTGTCAT
1 ATATAACCAAAGCTATGTCGATATCGCACACTAAGTGCCAT
*
45293214 ATACAACCAA
1 ATATAACCAA
45293224 TTTGTCGTCG
Statistics
Matches: 43, Mismatches: 7, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
40 25 0.58
41 18 0.42
ACGTcount: A:0.36, C:0.25, G:0.14, T:0.24
Consensus pattern (41 bp):
ATATAACCAAAGCTATGTCGATATCGCACACTAAGTGCCAT
Found at i:45300412 original size:40 final size:40
Alignment explanation
Indices: 45300344--45300529 Score: 174
Period size: 40 Copynumber: 4.6 Consensus size: 40
45300334 CGAGATCTCG
* * * ** *
45300344 CACACTAAATGCCGTACATAGTTGAAGCTATCTCAAATCA
1 CACACTAAGTGCCATATATAGCCGAAGCTATGTCAAATCA
* * * * * **
45300384 CACACTAAATGCCAAATATAGCCAAAGCTATTTTGATCTCA
1 CACACTAAGTGCCATATATAGCCGAAGCTA-TGTCAAATCA
* * * * *
45300425 GACACTAAGTTCCATATATGGCCGAAGCTATGTCGAATCG
1 CACACTAAGTGCCATATATAGCCGAAGCTATGTCAAATCA
** *
45300465 CACACTAAGTGCCATATATAGCCGAAGCTATGTTGAATCG
1 CACACTAAGTGCCATATATAGCCGAAGCTATGTCAAATCA
45300505 CACACTAAGTGCCATATATAGCCGA
1 CACACTAAGTGCCATATATAGCCGA
45300530 TTTGTTGTCG
Statistics
Matches: 119, Mismatches: 26, Indels: 2
0.81 0.18 0.01
Matches are distributed among these distances:
40 89 0.75
41 30 0.25
ACGTcount: A:0.35, C:0.24, G:0.16, T:0.25
Consensus pattern (40 bp):
CACACTAAGTGCCATATATAGCCGAAGCTATGTCAAATCA
Found at i:45300472 original size:81 final size:80
Alignment explanation
Indices: 45300341--45300529 Score: 218
Period size: 81 Copynumber: 2.4 Consensus size: 80
45300331 ACTCGAGATC
* * * **
45300341 TCGCACACTAAATGCCGTACATAGTTGAAGCTATCTCAAATCACACACTAAATGCCAAATATAGC
1 TCGCACACTAAGTGCCATATATAGCCGAAGCTATCTCAAATCACACACTAAATGCCAAATATAGC
*
45300406 CAAAGCTATTTTG-A
66 CAAAGCTATGTTGAA
* * * * * * * *
45300420 TCTCAGACACTAAGTTCCATATATGGCCGAAGCTATGTCGAATCGCACACTAAGTGCCATATATA
1 TCGC--ACACTAAGTGCCATATATAGCCGAAGCTATCTCAAATCACACACTAAATGCCAAATATA
*
45300485 GCCGAAGCTATGTTGAA
64 GCCAAAGCTATGTTGAA
45300502 TCGCACACTAAGTGCCATATATAGCCGA
1 TCGCACACTAAGTGCCATATATAGCCGA
45300530 TTTGTTGTCG
Statistics
Matches: 89, Mismatches: 18, Indels: 5
0.79 0.16 0.04
Matches are distributed among these distances:
79 3 0.03
80 22 0.25
81 60 0.67
82 4 0.04
ACGTcount: A:0.34, C:0.24, G:0.16, T:0.25
Consensus pattern (80 bp):
TCGCACACTAAGTGCCATATATAGCCGAAGCTATCTCAAATCACACACTAAATGCCAAATATAGC
CAAAGCTATGTTGAA
Found at i:45302509 original size:25 final size:25
Alignment explanation
Indices: 45302480--45302612 Score: 94
Period size: 25 Copynumber: 5.4 Consensus size: 25
45302470 CAACTCATGA
**
45302480 GAGCTTATTGATTCTTAGCTCGTAT
1 GAGCTTACAGATTCTTAGCTCGTAT
* *
45302505 GAGCTTACCGATT-GTAGCTCGTGA-
1 GAGCTTACAGATTCTTAGCTCGT-AT
*
45302529 GAGCTTACAGATTCTCAGCTCGTAT
1 GAGCTTACAGATTCTTAGCTCGTAT
* * *
45302554 GTGCTTACCGATT-TACAGCTCGTGA-
1 GAGCTTACAGATTCT-TAGCTCGT-AT
* * * *
45302579 GAGCATACCGATTCATAGCTCATAT
1 GAGCTTACAGATTCTTAGCTCGTAT
*
45302604 GAGCATACA
1 GAGCTTACA
45302613 TGTACAGGAA
Statistics
Matches: 87, Mismatches: 14, Indels: 14
0.76 0.12 0.12
Matches are distributed among these distances:
24 23 0.26
25 63 0.72
26 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.22, T:0.32
Consensus pattern (25 bp):
GAGCTTACAGATTCTTAGCTCGTAT
Found at i:45302542 original size:49 final size:49
Alignment explanation
Indices: 45302477--45302607 Score: 165
Period size: 49 Copynumber: 2.7 Consensus size: 49
45302467 TTGCAACTCA
**
45302477 TGAGAGCTTATTGATTCTTAGCTCGTATGAGCTTACCGATTGT-AGCTCG
1 TGAGAGCTTACAGATTCTTAGCTCGTATGAGCTTACCGATT-TAAGCTCG
* *
45302526 TGAGAGCTTACAGATTCTCAGCTCGTATGTGCTTACCGATTTACAGCTCG
1 TGAGAGCTTACAGATTCTTAGCTCGTATGAGCTTACCGATTTA-AGCTCG
* * * *
45302576 TGAGAGCATACCGATTCATAGCTCATATGAGC
1 TGAGAGCTTACAGATTCTTAGCTCGTATGAGC
45302608 ATACATGTAC
Statistics
Matches: 70, Mismatches: 10, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
48 1 0.01
49 37 0.53
50 32 0.46
ACGTcount: A:0.24, C:0.21, G:0.23, T:0.32
Consensus pattern (49 bp):
TGAGAGCTTACAGATTCTTAGCTCGTATGAGCTTACCGATTTAAGCTCG
Found at i:45302599 original size:50 final size:48
Alignment explanation
Indices: 45302489--45302607 Score: 150
Period size: 50 Copynumber: 2.4 Consensus size: 48
45302479 AGAGCTTATT
*
45302489 GATTCTTAGCTCGTATGAGCTTACCGATTGTAGCTCGTGAGAGCTTACA
1 GATTC-TAGCTCGTATGAGCTTACCGATTGTAGCTCGTGAGAGCATACA
* *
45302538 GATTCTCAGCTCGTATGTGCTTACCGATT-TACAGCTCGTGAGAGCATACC
1 GATTCT-AGCTCGTATGAGCTTACCGATTGT--AGCTCGTGAGAGCATACA
*
45302588 GATTCATAGCTCATATGAGC
1 GATTC-TAGCTCGTATGAGC
45302608 ATACATGTAC
Statistics
Matches: 61, Mismatches: 5, Indels: 7
0.84 0.07 0.10
Matches are distributed among these distances:
48 2 0.03
49 26 0.43
50 32 0.52
51 1 0.02
ACGTcount: A:0.24, C:0.23, G:0.23, T:0.31
Consensus pattern (48 bp):
GATTCTAGCTCGTATGAGCTTACCGATTGTAGCTCGTGAGAGCATACA
Found at i:45305670 original size:40 final size:40
Alignment explanation
Indices: 45305634--45305777 Score: 234
Period size: 40 Copynumber: 3.6 Consensus size: 40
45305624 CTACTCGCTT
45305634 AAATGCCTTCGGGACTTAGCCCGGAAATAGTAACTCGCAC
1 AAATGCCTTCGGGACTTAGCCCGGAAATAGTAACTCGCAC
* *
45305674 AAATGCCTTCGGGACATAGCCTGGAAATAGTAACTCGCAC
1 AAATGCCTTCGGGACTTAGCCCGGAAATAGTAACTCGCAC
** *
45305714 AAATGCCTTCGGGACTTAGCCCAAAAATAGTAACTCGTAC
1 AAATGCCTTCGGGACTTAGCCCGGAAATAGTAACTCGCAC
*
45305754 AAATACCTTCGGGACTTAGCCCGG
1 AAATGCCTTCGGGACTTAGCCCGG
45305778 TTATCATCCG
Statistics
Matches: 94, Mismatches: 10, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
40 94 1.00
ACGTcount: A:0.31, C:0.26, G:0.22, T:0.21
Consensus pattern (40 bp):
AAATGCCTTCGGGACTTAGCCCGGAAATAGTAACTCGCAC
Found at i:45308726 original size:48 final size:48
Alignment explanation
Indices: 45308655--45308746 Score: 184
Period size: 48 Copynumber: 1.9 Consensus size: 48
45308645 GGGATTTGCT
45308655 TGATCCCATATAAGACCATGTCTGGGACATGGCATTGGCATCAAAATG
1 TGATCCCATATAAGACCATGTCTGGGACATGGCATTGGCATCAAAATG
45308703 TGATCCCATATAAGACCATGTCTGGGACATGGCATTGGCATCAA
1 TGATCCCATATAAGACCATGTCTGGGACATGGCATTGGCATCAA
45308747 TATGAGACAT
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
48 44 1.00
ACGTcount: A:0.30, C:0.22, G:0.23, T:0.25
Consensus pattern (48 bp):
TGATCCCATATAAGACCATGTCTGGGACATGGCATTGGCATCAAAATG
Found at i:45308776 original size:48 final size:48
Alignment explanation
Indices: 45308656--45308776 Score: 127
Period size: 48 Copynumber: 2.5 Consensus size: 48
45308646 GGATTTGCTT
* ** *
45308656 GATCCCATATAAGACCATGTCTGGGACATGGCATTGGCATCAAAATGT
1 GATCCCATATAAGAACATAACTGGGACATGGCATTGGCATCAAAATGA
* ** *
45308704 GATCCCATATAAGACCATGTCTGGGACATGGCATTGGCATCAATATGA
1 GATCCCATATAAGAACATAACTGGGACATGGCATTGGCATCAAAATGA
* * *
45308752 GA-CATCGTGTAAGAACATAACTGGG
1 GATC-CCATATAAGAACATAACTGGG
45308777 CTACCGGATT
Statistics
Matches: 64, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
47 1 0.02
48 63 0.98
ACGTcount: A:0.32, C:0.20, G:0.24, T:0.24
Consensus pattern (48 bp):
GATCCCATATAAGAACATAACTGGGACATGGCATTGGCATCAAAATGA
Found at i:45314926 original size:16 final size:17
Alignment explanation
Indices: 45314898--45314932 Score: 54
Period size: 16 Copynumber: 2.1 Consensus size: 17
45314888 GTATGGGTCT
*
45314898 ATTGTGAATTTTATTAA
1 ATTGTGAATTTTATAAA
45314915 ATTGTG-ATTTTATAAA
1 ATTGTGAATTTTATAAA
45314931 AT
1 AT
45314933 AATGACTAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 11 0.65
17 6 0.35
ACGTcount: A:0.37, C:0.00, G:0.11, T:0.51
Consensus pattern (17 bp):
ATTGTGAATTTTATAAA
Found at i:45321572 original size:46 final size:46
Alignment explanation
Indices: 45321520--45321829 Score: 296
Period size: 46 Copynumber: 6.7 Consensus size: 46
45321510 TTTGGGAATT
45321520 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTC
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTC
*
45321566 CGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACGTC
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTC
* * * *
45321612 CGAACTCGTTGAGTTGAGTCCAAGTTC-GTGA--GATG-TAACTAGGCATC
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAC---G--TC
* * * *
45321659 CGAGCTTGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACATC
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTC
* * * *
45321705 CTAACACGTTGAGTTGAGTCCGAGTTCA-TGA--GATG-TAACTAGGCATC
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAC---G--TC
* * *
45321752 C-AAGCTCGTTGAGTTGAGTTCGAGTTCACTTATGGATACGAACGCC
1 CGAA-CTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTC
* *
45321798 CGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTA
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
45321830 CGGGTGGGTT
Statistics
Matches: 215, Mismatches: 29, Indels: 40
0.76 0.10 0.14
Matches are distributed among these distances:
42 6 0.03
43 8 0.04
45 5 0.02
46 126 0.59
47 52 0.24
48 5 0.02
50 7 0.03
51 6 0.03
ACGTcount: A:0.23, C:0.20, G:0.27, T:0.29
Consensus pattern (46 bp):
CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTC
Found at i:45321677 original size:47 final size:47
Alignment explanation
Indices: 45321610--45321779 Score: 188
Period size: 47 Copynumber: 3.6 Consensus size: 47
45321600 GATGCGAACG
* *
45321610 TCCGAACTCGTTGAGTTGAGTCCAAGTTCGTGAGATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCATGAGATGTAACTAGGCA
* * * *
45321657 TCCGAGCTTGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--A--CA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCA-TGA--GATGTAACTAGGCA
* *
45321703 TCCTAACACGTTGAGTTGAGTCCGAGTTCATGAGATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCATGAGATGTAACTAGGCA
*
45321750 TCC-AAGCTCGTTGAGTTGAGTTCGAGTTCA
1 TCCGAA-CTCGTTGAGTTGAGTCCGAGTTCA
45321780 CTTATGGATA
Statistics
Matches: 101, Mismatches: 14, Indels: 16
0.77 0.11 0.12
Matches are distributed among these distances:
43 6 0.06
45 3 0.03
46 30 0.30
47 53 0.52
48 3 0.03
50 6 0.06
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.29
Consensus pattern (47 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCATGAGATGTAACTAGGCA
Found at i:45321687 original size:93 final size:93
Alignment explanation
Indices: 45321564--45321825 Score: 398
Period size: 93 Copynumber: 2.8 Consensus size: 93
45321554 GATGCGAACG
* *
45321564 TCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGTTGA
1 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGTTGA
*
45321629 GTCCAAGTTCGTGAGATGTAACTAGGCA
66 GTCCGAGTTCGTGAGATGTAACTAGGCA
* * * * *
45321657 TCCGAGCTTGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACATCCTAACACGTTGAGTTGA
1 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGTTGA
*
45321722 GTCCGAGTTCATGAGATGTAACTAGGCA
66 GTCCGAGTTCGTGAGATGTAACTAGGCA
* * * * *
45321750 TCCAAGCTCGTTGAGTTGAGTTCGAGTTCACTTATGGATACGAACGCCCGAGCTCGTTGAGTTGA
1 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGTTGA
45321815 GTCCGAGTTCG
66 GTCCGAGTTCG
45321826 CTTACGGGTG
Statistics
Matches: 149, Mismatches: 20, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
93 149 1.00
ACGTcount: A:0.23, C:0.20, G:0.27, T:0.29
Consensus pattern (93 bp):
TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGTTGA
GTCCGAGTTCGTGAGATGTAACTAGGCA
Found at i:45329080 original size:5 final size:5
Alignment explanation
Indices: 45329070--45329173 Score: 65
Period size: 5 Copynumber: 20.2 Consensus size: 5
45329060 TATGTCTTTC
* *
45329070 AAAAT AAAAT AAAAAT AAAATT GAAAT AAAAAT CAAAAT CAAAAG AAAA-
1 AAAAT AAAAT -AAAAT AAAA-T AAAAT -AAAAT -AAAAT -AAAAT AAAAT
* *
45329119 AGAAA- AAGA- AAAAG AAAAT -AAAT AAAAT AAAAAT AAGAAT -AAAT
1 A-AAAT AAAAT AAAAT AAAAT AAAAT AAAAT -AAAAT AA-AAT AAAAT
45329163 AAAAT AAAAT A
1 AAAAT AAAAT A
45329174 GGAGGATTCA
Statistics
Matches: 83, Mismatches: 7, Indels: 18
0.77 0.06 0.17
Matches are distributed among these distances:
4 13 0.16
5 39 0.47
6 31 0.37
ACGTcount: A:0.77, C:0.02, G:0.06, T:0.15
Consensus pattern (5 bp):
AAAAT
Found at i:45329086 original size:6 final size:6
Alignment explanation
Indices: 45329070--45329161 Score: 62
Period size: 6 Copynumber: 15.3 Consensus size: 6
45329060 TATGTCTTTC
* * * * *
45329070 AAAAT- AAAATA AAAAT- AAAATT GAAATA AAAATC AAAATC AAAAGA
1 AAAATA AAAATA AAAATA AAAATA AAAATA AAAATA AAAATA AAAATA
* * * * *
45329116 AAAAGA AAAAGA AAAAGA AAATAAA TAAAATA AAAATA AGAATA AA
1 AAAATA AAAATA AAAATA AAA-ATA -AAAATA AAAATA AAAATA AA
45329162 TAAAATAAAA
Statistics
Matches: 73, Mismatches: 10, Indels: 7
0.81 0.11 0.08
Matches are distributed among these distances:
5 10 0.14
6 56 0.77
7 4 0.05
8 3 0.04
ACGTcount: A:0.77, C:0.02, G:0.07, T:0.14
Consensus pattern (6 bp):
AAAATA
Found at i:45329108 original size:12 final size:11
Alignment explanation
Indices: 45329070--45329171 Score: 77
Period size: 12 Copynumber: 9.3 Consensus size: 11
45329060 TATGTCTTTC
45329070 AAAATAAAATA
1 AAAATAAAATA
*
45329081 AAAATAAAATT
1 AAAATAAAATA
* *
45329092 GAAATAAAAATC
1 AAAAT-AAAATA
*
45329104 AAAATCAAAAGA
1 AAAAT-AAAATA
* *
45329116 AAAAGAAAAAGA
1 AAAA-TAAAATA
*
45329128 AAAAGAAAAT-
1 AAAATAAAATA
45329138 -AAATAAAATA
1 AAAATAAAATA
45329148 AAAATAAGAAT-
1 AAAATAA-AATA
45329159 -AAATAAAATA
1 AAAATAAAATA
45329169 AAA
1 AAA
45329172 TAGGAGGATT
Statistics
Matches: 73, Mismatches: 11, Indels: 14
0.74 0.11 0.14
Matches are distributed among these distances:
9 11 0.15
10 6 0.08
11 26 0.36
12 30 0.41
ACGTcount: A:0.77, C:0.02, G:0.06, T:0.15
Consensus pattern (11 bp):
AAAATAAAATA
Found at i:45329151 original size:21 final size:21
Alignment explanation
Indices: 45329071--45329171 Score: 89
Period size: 21 Copynumber: 4.6 Consensus size: 21
45329061 ATGTCTTTCA
*
45329071 AAATAAAATAAAAATAAAATT
1 AAATAAAATAAAAATAAAAAT
* *
45329092 GAAATAAAAATCAAAATCAAAAGAA
1 -AAAT-AAAATAAAAAT-AAAA-AT
*
45329117 AAAGAAAA-AGAAAA-AGAAAAT
1 AAATAAAATA-AAAATA-AAAAT
*
45329138 AAATAAAATAAAAATAAGAAT
1 AAATAAAATAAAAATAAAAAT
45329159 AAATAAAATAAAA
1 AAATAAAATAAAA
45329172 TAGGAGGATT
Statistics
Matches: 64, Mismatches: 8, Indels: 15
0.74 0.09 0.17
Matches are distributed among these distances:
21 30 0.47
22 9 0.14
23 18 0.28
24 7 0.11
ACGTcount: A:0.77, C:0.02, G:0.06, T:0.15
Consensus pattern (21 bp):
AAATAAAATAAAAATAAAAAT
Found at i:45345260 original size:40 final size:39
Alignment explanation
Indices: 45345223--45345314 Score: 123
Period size: 39 Copynumber: 2.3 Consensus size: 39
45345213 GCTACTCGTT
*
45345223 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGG-CATAGCCCGGAAT-TAGTAACTCGCA
* * *
45345263 CAATTGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCATAGCCCGGAATTAGTAACTCGCA
45345302 CAAATGCCTTCGG
1 CAAATGCCTTCGG
45345315 ATCTTAGTCC
Statistics
Matches: 46, Mismatches: 5, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
39 32 0.70
40 14 0.30
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.25
Consensus pattern (39 bp):
CAAATGCCTTCGGGCATAGCCCGGAATTAGTAACTCGCA
Found at i:45345294 original size:39 final size:39
Alignment explanation
Indices: 45345204--45345367 Score: 149
Period size: 40 Copynumber: 4.1 Consensus size: 39
45345194 CGGAATTTAA
*
45345204 CCGGATATAGCT-ACTCGTTCA-AATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCG--CACAATGCCTTCGGGACTTAGC
*
45345244 CCGGTTATAGTAACTCGCACAATTGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAA-TGCCTTCGGGACTTAGC
* *
45345283 CCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCAC-AATGCCTTCGGGA-CTTAGC
* * * *
45345323 CCGGATATGGTCACTTAGCACAAAGCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAATGCCTTCGGGACTTAGC
45345363 CCGGA
1 CCGGA
45345368 CATCATTCAA
Statistics
Matches: 103, Mismatches: 11, Indels: 20
0.77 0.08 0.15
Matches are distributed among these distances:
38 5 0.05
39 31 0.30
40 58 0.56
41 9 0.09
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (39 bp):
CCGGATATAGTAACTCGCACAATGCCTTCGGGACTTAGC
Found at i:45357804 original size:49 final size:49
Alignment explanation
Indices: 45357746--45357977 Score: 266
Period size: 49 Copynumber: 4.7 Consensus size: 49
45357736 CTGGTATGCA
* * *
45357746 TAGTAGCCTGTACTTAGTACTACACATGCGACCAACTATCCGGTACATG
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCAACTATCCGGTACACG
* * * *
45357795 TAGTAGCCTGCTCTTAGTACTACACATGTGACCTAACCATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACATGTGACC-AACTATCCGGTACACG
* * * * * ** *
45357845 TAGTAGCATGCACTTAGTACTACACACGTGATCAAAGTTATCGGGTATGCA
1 TAGTAGCCTGCACTTAGTACTACACATGTGA-CCAA-CTATCCGGTACACG
* * * *
45357896 TAGTAGCCTGCACTTAGTACTACACATGCGATCAATTATCCGGTACACA
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCAACTATCCGGTACACG
45357945 TAGTAGCCTGCACTTAGTACTACACATGTGACC
1 TAGTAGCCTGCACTTAGTACTACACATGTGACC
45357978 TCACAATAGA
Statistics
Matches: 152, Mismatches: 28, Indels: 6
0.82 0.15 0.03
Matches are distributed among these distances:
49 72 0.47
50 44 0.29
51 36 0.24
ACGTcount: A:0.29, C:0.25, G:0.18, T:0.27
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACATGTGACCAACTATCCGGTACACG
Found at i:45357971 original size:26 final size:26
Alignment explanation
Indices: 45357894--45357971 Score: 67
Period size: 26 Copynumber: 3.1 Consensus size: 26
45357884 ATCGGGTATG
45357894 CATAGTAGCCTGCACTTAGTACTACA
1 CATAGTAGCCTGCACTTAGTACTACA
* * * *
45357920 CAT-G-CG-AT-CAATTA-TCCGGTACA
1 CATAGTAGCCTGCACTTAGTAC--TACA
45357943 CATAGTAGCCTGCACTTAGTACTACA
1 CATAGTAGCCTGCACTTAGTACTACA
45357969 CAT
1 CAT
45357972 GTGACCTCAC
Statistics
Matches: 37, Mismatches: 8, Indels: 14
0.63 0.14 0.24
Matches are distributed among these distances:
21 2 0.05
22 5 0.14
23 8 0.22
24 2 0.05
25 2 0.05
26 11 0.30
27 5 0.14
28 2 0.05
ACGTcount: A:0.31, C:0.27, G:0.15, T:0.27
Consensus pattern (26 bp):
CATAGTAGCCTGCACTTAGTACTACA
Found at i:45360765 original size:23 final size:22
Alignment explanation
Indices: 45360739--45360781 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 22
45360729 TCTAAACTTT
45360739 TATC-TTACACATCATCATATACA
1 TATCATTACA-ATCAT-ATATACA
45360762 TATCATTACAATCATATATA
1 TATCATTACAATCATATATA
45360782 TTAGTCCAAG
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
22 5 0.26
23 9 0.47
24 5 0.26
ACGTcount: A:0.42, C:0.21, G:0.00, T:0.37
Consensus pattern (22 bp):
TATCATTACAATCATATATACA
Found at i:45362559 original size:49 final size:49
Alignment explanation
Indices: 45362503--45362721 Score: 267
Period size: 49 Copynumber: 4.4 Consensus size: 49
45362493 CTGGTACGCA
* *
45362503 TAGTAGCCTGTACTTAGTACTACACATGCGACCAATTATCCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCAATTATCCGGTACACG
* * ** * *
45362552 TATTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGCGACC-AATTATCCGGTACACG
* * * * *
45362602 TAGTAGCCTGCACTTAGTACTACACACGTGATCAAAGTTATCAGGTACGCC
1 TAGTAGCCTGCACTTAGTACTACACACGCGA-CCAA-TTATCCGGTACACG
*
45362653 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCAATTATCCGGTACACG
* *
45362702 TTGTATCCTGCACTTAGTAC
1 TAGTAGCCTGCACTTAGTAC
45362722 AATACACGTG
Statistics
Matches: 143, Mismatches: 24, Indels: 6
0.83 0.14 0.03
Matches are distributed among these distances:
49 58 0.41
50 47 0.33
51 38 0.27
ACGTcount: A:0.28, C:0.27, G:0.17, T:0.27
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACACGCGACCAATTATCCGGTACACG
Found at i:45371719 original size:50 final size:50
Alignment explanation
Indices: 45371599--45371842 Score: 281
Period size: 50 Copynumber: 4.8 Consensus size: 50
45371589 ATTGTAAGAA
* * * *** *
45371599 CACATGTGTAGTACTATGTGCAGGCTACTATGTGTTTAAGATGGTTTTAGGT
1 CACATGTGTAGTACTAAGTGTAGGCTACTACGTGTACCAGATAG--TTAGGT
* * *
45371651 CACGTGTGTAGTACTAAGTGTAGGATACTACATGTACCAGATAGTTAGGT
1 CACATGTGTAGTACTAAGTGTAGGCTACTACGTGTACCAGATAGTTAGGT
* * * *
45371701 CGCATGTGTAGTAGTAAGTGTAGGCTACTACGTGTATCAGATGGTTAGGT
1 CACATGTGTAGTACTAAGTGTAGGCTACTACGTGTACCAGATAGTTAGGT
* *
45371751 CTCGTGTGTAGTACTAAGTGTAGGCTACTACGTGTACCAGATAGTTAGGT
1 CACATGTGTAGTACTAAGTGTAGGCTACTACGTGTACCAGATAGTTAGGT
* * * * *
45371801 CACACGTGTAGTGCTAAGTGCAGGCTACTATGCGTACCAGAT
1 CACATGTGTAGTACTAAGTGTAGGCTACTACGTGTACCAGAT
45371843 GGCTTCTGTT
Statistics
Matches: 163, Mismatches: 29, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
50 129 0.79
52 34 0.21
ACGTcount: A:0.25, C:0.15, G:0.28, T:0.32
Consensus pattern (50 bp):
CACATGTGTAGTACTAAGTGTAGGCTACTACGTGTACCAGATAGTTAGGT
Found at i:45371780 original size:100 final size:101
Alignment explanation
Indices: 45371599--45371844 Score: 343
Period size: 100 Copynumber: 2.4 Consensus size: 101
45371589 ATTGTAAGAA
* * * *
45371599 CACATGTGTAGTACTATGTGCAGGCTACTATGTGTTTAAGATGGTTTTAGGTCACGTGTGTAGTA
1 CACATGTGTAGTAGTAAGTGCAGGCTACTATGTGTATCAGATGG-TTTAGGTCACGTGTGTAGTA
45371664 CTAAGTGTAGGATACTACATGTACCAGATAGTTAGGT
65 CTAAGTGTAGGATACTACATGTACCAGATAGTTAGGT
* * * *
45371701 CGCATGTGTAGTAGTAAGTGTAGGCTACTACGTGTATCAGATGG-TTAGGTCTCGTGTGTAGTAC
1 CACATGTGTAGTAGTAAGTGCAGGCTACTATGTGTATCAGATGGTTTAGGTCACGTGTGTAGTAC
* *
45371765 TAAGTGTAGGCTACTACGTGTACCAGATAGTTAGGT
66 TAAGTGTAGGATACTACATGTACCAGATAGTTAGGT
* * *
45371801 CACACGTGTAGT-GCTAAGTGCAGGCTACTATGCGTACCAGATGG
1 CACATGTGTAGTAG-TAAGTGCAGGCTACTATGTGTATCAGATGG
45371845 CTTCTGTTAC
Statistics
Matches: 127, Mismatches: 16, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
99 1 0.01
100 89 0.70
102 37 0.29
ACGTcount: A:0.25, C:0.15, G:0.28, T:0.31
Consensus pattern (101 bp):
CACATGTGTAGTAGTAAGTGCAGGCTACTATGTGTATCAGATGGTTTAGGTCACGTGTGTAGTAC
TAAGTGTAGGATACTACATGTACCAGATAGTTAGGT
Found at i:45372063 original size:16 final size:15
Alignment explanation
Indices: 45372042--45372071 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
45372032 GAATGGAGTA
45372042 AGTGAAATTATGTAAG
1 AGTGAAATT-TGTAAG
45372058 AGTGAAATTTGTAA
1 AGTGAAATTTGTAA
45372072 TAAAACAGTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.43, C:0.00, G:0.23, T:0.33
Consensus pattern (15 bp):
AGTGAAATTTGTAAG
Found at i:45379876 original size:43 final size:42
Alignment explanation
Indices: 45379800--45379887 Score: 113
Period size: 43 Copynumber: 2.1 Consensus size: 42
45379790 TTCGTGAGAT
* *
45379800 ATGTGGCATCTGAGCTGGTTAAGAGGTTCGAGTTCATTATGG
1 ATGTGGCATCCGAGCTGGTTAAGAGGTTCGAGTTCATAATGG
* * * *
45379842 ATGTGAGCATCCGAGCTTGTTGAGTGGTTTGAGTTCATAATGG
1 ATGTG-GCATCCGAGCTGGTTAAGAGGTTCGAGTTCATAATGG
45379885 ATG
1 ATG
45379888 CGATTCATGT
Statistics
Matches: 39, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
42 5 0.13
43 34 0.87
ACGTcount: A:0.22, C:0.11, G:0.33, T:0.34
Consensus pattern (42 bp):
ATGTGGCATCCGAGCTGGTTAAGAGGTTCGAGTTCATAATGG
Done.