Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A06
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 115140250
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2234201 characters in sequence are not A, C, G, or T
File 135 of 345
Found at i:45773206 original size:27 final size:27
Alignment explanation
Indices: 45773169--45773220 Score: 95
Period size: 27 Copynumber: 1.9 Consensus size: 27
45773159 TGGACTTCAT
45773169 TTTTTTTATTTGGGATAATTTTAATCA
1 TTTTTTTATTTGGGATAATTTTAATCA
*
45773196 TTTTTTTATTTGGGATGATTTTAAT
1 TTTTTTTATTTGGGATAATTTTAAT
45773221 TTTTGTTTTA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.23, C:0.02, G:0.13, T:0.62
Consensus pattern (27 bp):
TTTTTTTATTTGGGATAATTTTAATCA
Found at i:45773229 original size:27 final size:27
Alignment explanation
Indices: 45773168--45773230 Score: 92
Period size: 27 Copynumber: 2.3 Consensus size: 27
45773158 TTGGACTTCA
45773168 TTTTTTTTATTTGGGATAATTTTAATC
1 TTTTTTTTATTTGGGATAATTTTAATC
* *
45773195 ATTTTTTTATTTGGGATGATTTTAAT-
1 TTTTTTTTATTTGGGATAATTTTAATC
45773221 TTTTGTTTTA
1 TTTT-TTTTA
45773231 GTTTTCAATT
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
26 3 0.09
27 29 0.91
ACGTcount: A:0.21, C:0.02, G:0.13, T:0.65
Consensus pattern (27 bp):
TTTTTTTTATTTGGGATAATTTTAATC
Found at i:45779110 original size:33 final size:33
Alignment explanation
Indices: 45779066--45779131 Score: 96
Period size: 33 Copynumber: 2.0 Consensus size: 33
45779056 TCCCCCCTTT
* *
45779066 CCTTGAACCACTCCTCAAAACTCTTCTCCAATC
1 CCTTGAACCACTCCTCAAAACTCTCCTACAATC
* *
45779099 CCTTGATCCACTCCTCAAGACTCTCCTACAATC
1 CCTTGAACCACTCCTCAAAACTCTCCTACAATC
45779132 TCTCAACCAT
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 29 1.00
ACGTcount: A:0.26, C:0.42, G:0.05, T:0.27
Consensus pattern (33 bp):
CCTTGAACCACTCCTCAAAACTCTCCTACAATC
Found at i:45784823 original size:38 final size:38
Alignment explanation
Indices: 45784769--45784854 Score: 129
Period size: 38 Copynumber: 2.3 Consensus size: 38
45784759 CCGTCCAACG
*
45784769 CTACACTCCATGTGGGGATATAATCAACCCACGC-ATCC
1 CTACACTCCATATGGGGATATAATCAACCCAC-CTATCC
* *
45784807 CTACACTTCATATGGGGATATAATTAACCCACCTATCC
1 CTACACTCCATATGGGGATATAATCAACCCACCTATCC
45784845 CTACACTCCA
1 CTACACTCCA
45784855 AGTAGTACCG
Statistics
Matches: 43, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
37 1 0.02
38 42 0.98
ACGTcount: A:0.30, C:0.34, G:0.12, T:0.24
Consensus pattern (38 bp):
CTACACTCCATATGGGGATATAATCAACCCACCTATCC
Found at i:45787283 original size:27 final size:26
Alignment explanation
Indices: 45787247--45787361 Score: 140
Period size: 27 Copynumber: 4.3 Consensus size: 26
45787237 AGCATGGCTG
* *
45787247 CCAGAACAGATAATGTGACAGAGTCA
1 CCAGAACAGATAATGTGGCAGAGCCA
45787273 CCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGA-ACAGATAAT-GTGGCAGAGCCA
45787301 CCAGAACAGATATATGTGGCAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
* * * *
45787328 CCAGATCAAATATTTGTGGCATAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
45787355 CCAGAAC
1 CCAGAAC
45787362 GCTTCCTCCA
Statistics
Matches: 79, Mismatches: 7, Indels: 5
0.87 0.08 0.05
Matches are distributed among these distances:
26 5 0.06
27 57 0.72
28 17 0.22
ACGTcount: A:0.37, C:0.23, G:0.23, T:0.17
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:45787306 original size:54 final size:54
Alignment explanation
Indices: 45787247--45787361 Score: 160
Period size: 54 Copynumber: 2.1 Consensus size: 54
45787237 AGCATGGCTG
* *
45787247 CCAGAACAGATA-ATGTGACAGAGTCACCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGAACAGATATATGTGACAGAGCCACCAGAT-CAAATAATCGTGGCAGAGCCA
* * * *
45787301 CCAGAACAGATATATGTGGCAGAGCCACCAGATCAAATATTTGTGGCATAGCCA
1 CCAGAACAGATATATGTGACAGAGCCACCAGATCAAATAATCGTGGCAGAGCCA
45787355 CCAGAAC
1 CCAGAAC
45787362 GCTTCCTCCA
Statistics
Matches: 54, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
54 36 0.67
55 18 0.33
ACGTcount: A:0.37, C:0.23, G:0.23, T:0.17
Consensus pattern (54 bp):
CCAGAACAGATATATGTGACAGAGCCACCAGATCAAATAATCGTGGCAGAGCCA
Found at i:45789384 original size:22 final size:23
Alignment explanation
Indices: 45789343--45789386 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
45789333 GGTTTGCATG
45789343 TTATTTTCTATTTTTAGTTTAGT
1 TTATTTTCTATTTTTAGTTTAGT
45789366 TTATTTT-TAGTTTTT-GTTTAG
1 TTATTTTCTA-TTTTTAGTTTAG
45789387 CTTTCTTGAG
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
22 8 0.40
23 12 0.60
ACGTcount: A:0.16, C:0.02, G:0.11, T:0.70
Consensus pattern (23 bp):
TTATTTTCTATTTTTAGTTTAGT
Found at i:45812204 original size:18 final size:18
Alignment explanation
Indices: 45812158--45812205 Score: 80
Period size: 18 Copynumber: 2.7 Consensus size: 18
45812148 CGAAAGAACG
*
45812158 ATTA-CAAAAAAGTAAAA
1 ATTATCAAAAACGTAAAA
45812175 ATTATCAAAAACGTAAAA
1 ATTATCAAAAACGTAAAA
45812193 ATTATCAAAAACG
1 ATTATCAAAAACG
45812206 GATTAAAAAC
Statistics
Matches: 29, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
17 4 0.14
18 25 0.86
ACGTcount: A:0.62, C:0.10, G:0.06, T:0.21
Consensus pattern (18 bp):
ATTATCAAAAACGTAAAA
Found at i:45815854 original size:52 final size:52
Alignment explanation
Indices: 45815737--45815906 Score: 235
Period size: 52 Copynumber: 3.3 Consensus size: 52
45815727 ACTAGTGACT
*
45815737 CAAGTGTGGTACTATGTGAACGCCAC--TGTG-AGAAGAGATAGC-TTGGTCA
1 CAAGTGTGGTACTATGTGAAGGCCACTTTGTGAAGAA-AGATAGCTTTGGTCA
45815786 CAAGTGTGGTACTATGTGAAGGCCACTTTGTGAAGAAAGATAGCTTTGGTCA
1 CAAGTGTGGTACTATGTGAAGGCCACTTTGTGAAGAAAGATAGCTTTGGTCA
* * *
45815838 CAAGTGTGGTACTATGTGAAGGCCACTTTGTGAAG-AAGGTAACTTT-GACTA
1 CAAGTGTGGTACTATGTGAAGGCCACTTTGTGAAGAAAGATAGCTTTGGTC-A
*
45815889 CAAGGGTGGTACTATGTG
1 CAAGTGTGGTACTATGTG
45815907 CAGACTACCG
Statistics
Matches: 111, Mismatches: 5, Indels: 8
0.90 0.04 0.06
Matches are distributed among these distances:
49 25 0.23
50 2 0.02
51 38 0.34
52 46 0.41
ACGTcount: A:0.28, C:0.14, G:0.30, T:0.28
Consensus pattern (52 bp):
CAAGTGTGGTACTATGTGAAGGCCACTTTGTGAAGAAAGATAGCTTTGGTCA
Found at i:45815905 original size:51 final size:51
Alignment explanation
Indices: 45815732--45815906 Score: 223
Period size: 51 Copynumber: 3.5 Consensus size: 51
45815722 ATGTCACTAG
* * *
45815732 TGACT-CAAGTGTGGTACTATGTGAACGCCACTGTGAGAAG-AGATAGCTT
1 TGACTACAAGTGTGGTACTATGTGAAGGCCACTTTGTGAAGAAGATAGCTT
* *
45815781 GGTC-ACAAGTGTGGTACTATGTGAAGGCCACTTTGTGAAGAAAGATAGCTT
1 TGACTACAAGTGTGGTACTATGTGAAGGCCACTTTGTGAAG-AAGATAGCTT
* * *
45815832 TG-GTCACAAGTGTGGTACTATGTGAAGGCCACTTTGTGAAGAAGGTAACTT
1 TGACT-ACAAGTGTGGTACTATGTGAAGGCCACTTTGTGAAGAAGATAGCTT
*
45815883 TGACTACAAGGGTGGTACTATGTG
1 TGACTACAAGTGTGGTACTATGTG
45815907 CAGACTACCG
Statistics
Matches: 109, Mismatches: 11, Indels: 10
0.84 0.08 0.08
Matches are distributed among these distances:
49 34 0.31
51 38 0.35
52 37 0.34
ACGTcount: A:0.28, C:0.14, G:0.30, T:0.28
Consensus pattern (51 bp):
TGACTACAAGTGTGGTACTATGTGAAGGCCACTTTGTGAAGAAGATAGCTT
Found at i:45816048 original size:12 final size:12
Alignment explanation
Indices: 45816031--45816055 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
45816021 AATGTGCTCG
45816031 ATATGTGATCAA
1 ATATGTGATCAA
45816043 ATATGTGATCAA
1 ATATGTGATCAA
45816055 A
1 A
45816056 CTTTGGTAAG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.44, C:0.08, G:0.16, T:0.32
Consensus pattern (12 bp):
ATATGTGATCAA
Found at i:45816271 original size:26 final size:26
Alignment explanation
Indices: 45816242--45816293 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
45816232 TATTGAGTCT
*
45816242 ATTTTCATATAAATGAAATGGTGTAA
1 ATTTTCATATAAAGGAAATGGTGTAA
45816268 ATTTTCATATAAAGGAAATGGTGTAA
1 ATTTTCATATAAAGGAAATGGTGTAA
45816294 GCAAAAGAAT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.42, C:0.04, G:0.17, T:0.37
Consensus pattern (26 bp):
ATTTTCATATAAAGGAAATGGTGTAA
Found at i:45827099 original size:12 final size:12
Alignment explanation
Indices: 45827082--45827113 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
45827072 TTATTAAAAC
45827082 TACTTTTATTTT
1 TACTTTTATTTT
45827094 TACTTTTATTTT
1 TACTTTTATTTT
*
45827106 TATTTTTA
1 TACTTTTA
45827114 GCAGATTTTA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.19, C:0.06, G:0.00, T:0.75
Consensus pattern (12 bp):
TACTTTTATTTT
Found at i:45828803 original size:63 final size:63
Alignment explanation
Indices: 45828725--45828851 Score: 245
Period size: 63 Copynumber: 2.0 Consensus size: 63
45828715 TTATGAGTTG
45828725 AGAATTTTGCTTGAAGACAAGCAAATGCTTAAGTGTGGGGGTATTCGATAAACCATAAATTAT
1 AGAATTTTGCTTGAAGACAAGCAAATGCTTAAGTGTGGGGGTATTCGATAAACCATAAATTAT
*
45828788 AGAATTTTGCTTGAAGACAAGCAAGTGCTTAAGTGTGGGGGTATTCGATAAACCATAAATTAT
1 AGAATTTTGCTTGAAGACAAGCAAATGCTTAAGTGTGGGGGTATTCGATAAACCATAAATTAT
45828851 A
1 A
45828852 CATATTTTTA
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
63 63 1.00
ACGTcount: A:0.36, C:0.11, G:0.23, T:0.30
Consensus pattern (63 bp):
AGAATTTTGCTTGAAGACAAGCAAATGCTTAAGTGTGGGGGTATTCGATAAACCATAAATTAT
Found at i:45831301 original size:43 final size:43
Alignment explanation
Indices: 45831175--45831324 Score: 171
Period size: 43 Copynumber: 3.5 Consensus size: 43
45831165 CAATATGTGT
* *
45831175 TTTCGTGTAAGACCATGTCTGGGACATTGGCATCGACT-TATGA
1 TTTCATGTAAGACCATGTCTGGGACATTGGCATCGA-TATTTGA
* *
45831218 TTT-ATGTGTACGACCATGTATGGGACATTGGCATCG-TATTTGA
1 TTTCA--TGTAAGACCATGTCTGGGACATTGGCATCGATATTTGA
* **
45831261 TTTCATGTAAGACCTTGTCTGGGACAGCGGCATCGATATTTGA
1 TTTCATGTAAGACCATGTCTGGGACATTGGCATCGATATTTGA
* *
45831304 TTACATGTAAGACCACGTCTG
1 TTTCATGTAAGACCATGTCTG
45831325 AGATGTTGGC
Statistics
Matches: 90, Mismatches: 12, Indels: 10
0.80 0.11 0.09
Matches are distributed among these distances:
42 26 0.29
43 35 0.39
44 29 0.32
ACGTcount: A:0.24, C:0.18, G:0.25, T:0.33
Consensus pattern (43 bp):
TTTCATGTAAGACCATGTCTGGGACATTGGCATCGATATTTGA
Found at i:45831336 original size:43 final size:43
Alignment explanation
Indices: 45831180--45831341 Score: 118
Period size: 43 Copynumber: 3.8 Consensus size: 43
45831170 TGTGTTTTCG
* * **
45831180 TGTAAGACCATGTCTGGGACA-TTGGCATCG-ACTTATGATTTATG
1 TGTAAGACCACGTCTGAGACAGTTGGCATCGTA-TT-TGA-TTACA
* * * * *
45831224 TGTACGACCATGTATGGGACA-TTGGCATCGTATTTGATTTCA
1 TGTAAGACCACGTCTGAGACAGTTGGCATCGTATTTGATTACA
** * *
45831266 TGTAAGACCTTGTCTGGGACAG-CGGCATCGATATTTGATTACA
1 TGTAAGACCACGTCTGAGACAGTTGGCATCG-TATTTGATTACA
* *
45831309 TGTAAGACCACGTCTGAGA-TGTTGGCATTGTAT
1 TGTAAGACCACGTCTGAGACAGTTGGCATCGTAT
45831342 GATCCTTTCG
Statistics
Matches: 98, Mismatches: 16, Indels: 10
0.79 0.13 0.08
Matches are distributed among these distances:
42 31 0.32
43 36 0.37
44 30 0.31
45 1 0.01
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (43 bp):
TGTAAGACCACGTCTGAGACAGTTGGCATCGTATTTGATTACA
Found at i:45833693 original size:27 final size:28
Alignment explanation
Indices: 45833663--45833721 Score: 86
Period size: 28 Copynumber: 2.1 Consensus size: 28
45833653 TAAATTGTTA
45833663 GTTGGGA-TTCTAGAGATAAAAGAGTTT
1 GTTGGGACTTCTAGAGATAAAAGAGTTT
*
45833690 GTT-GTACTTTCTAGAGATAAAAGAGTTT
1 GTTGGGAC-TTCTAGAGATAAAAGAGTTT
45833718 GTTG
1 GTTG
45833722 TACTTGTTGA
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
26 2 0.07
27 3 0.11
28 23 0.82
ACGTcount: A:0.31, C:0.05, G:0.27, T:0.37
Consensus pattern (28 bp):
GTTGGGACTTCTAGAGATAAAAGAGTTT
Found at i:45833702 original size:28 final size:28
Alignment explanation
Indices: 45833670--45833726 Score: 114
Period size: 28 Copynumber: 2.0 Consensus size: 28
45833660 TTAGTTGGGA
45833670 TTCTAGAGATAAAAGAGTTTGTTGTACT
1 TTCTAGAGATAAAAGAGTTTGTTGTACT
45833698 TTCTAGAGATAAAAGAGTTTGTTGTACT
1 TTCTAGAGATAAAAGAGTTTGTTGTACT
45833726 T
1 T
45833727 GTTGAATGAG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.32, C:0.07, G:0.21, T:0.40
Consensus pattern (28 bp):
TTCTAGAGATAAAAGAGTTTGTTGTACT
Found at i:45839806 original size:24 final size:24
Alignment explanation
Indices: 45839779--45839826 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
45839769 TAAGGGGTTT
45839779 AGTTCATAATAAAATAAGAGTACA
1 AGTTCATAATAAAATAAGAGTACA
45839803 AGTTCATAATAAAATAAGAGTACA
1 AGTTCATAATAAAATAAGAGTACA
45839827 TCTCAAAAGT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.54, C:0.08, G:0.12, T:0.25
Consensus pattern (24 bp):
AGTTCATAATAAAATAAGAGTACA
Found at i:45841566 original size:49 final size:51
Alignment explanation
Indices: 45841494--45841620 Score: 204
Period size: 49 Copynumber: 2.5 Consensus size: 51
45841484 ACTAGTGACT
*
45841494 CAAGTGTGGTACTATATGAAGGCCACTTTGAGAAG-AGATAGC-TTGGTCA
1 CAAGTGTGGTACTATGTGAAGGCCACTTTGAGAAGAAGATAGCTTTGGTCA
*
45841543 CAAGTGTGGTACTATGTGAAGGCCACTTTGTGAAGAAAGATAGCTTTGGTCA
1 CAAGTGTGGTACTATGTGAAGGCCACTTTGAGAAG-AAGATAGCTTTGGTCA
*
45841595 CAAGTGTGGTACTATGTGTAGGCCAC
1 CAAGTGTGGTACTATGTGAAGGCCAC
45841621 CGGGTATCTA
Statistics
Matches: 72, Mismatches: 3, Indels: 3
0.92 0.04 0.04
Matches are distributed among these distances:
49 33 0.46
51 7 0.10
52 32 0.44
ACGTcount: A:0.28, C:0.15, G:0.29, T:0.28
Consensus pattern (51 bp):
CAAGTGTGGTACTATGTGAAGGCCACTTTGAGAAGAAGATAGCTTTGGTCA
Found at i:45843232 original size:32 final size:32
Alignment explanation
Indices: 45843191--45843277 Score: 102
Period size: 32 Copynumber: 2.7 Consensus size: 32
45843181 TTTACCCAAT
* * *
45843191 GCTGTGTGCCGATTATATTACCGTCACTGATG
1 GCTGTGTGCCAATTATAATACCGTCACCGATG
** * *
45843223 GCTGTGTGCCAAGCATAATACAGTTACCGATG
1 GCTGTGTGCCAATTATAATACCGTCACCGATG
*
45843255 GCTTTGTGCCAATTATAATACCG
1 GCTGTGTGCCAATTATAATACCG
45843278 CTATTGAAGG
Statistics
Matches: 44, Mismatches: 11, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
32 44 1.00
ACGTcount: A:0.24, C:0.22, G:0.23, T:0.31
Consensus pattern (32 bp):
GCTGTGTGCCAATTATAATACCGTCACCGATG
Found at i:45843523 original size:32 final size:32
Alignment explanation
Indices: 45843487--45843551 Score: 87
Period size: 32 Copynumber: 2.0 Consensus size: 32
45843477 TGTCACTGTA
*
45843487 TTGGGCTTAGGCCCACTT-GTTCTGTTATCGGT
1 TTGGGC-TAGGCCCAATTGGTTCTGTTATCGGT
* *
45843519 TTGGGCTAGGTCCAATTGGTTCTGTTATGGGT
1 TTGGGCTAGGCCCAATTGGTTCTGTTATCGGT
45843551 T
1 T
45843552 GTGACCCAAA
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
31 9 0.31
32 20 0.69
ACGTcount: A:0.11, C:0.17, G:0.31, T:0.42
Consensus pattern (32 bp):
TTGGGCTAGGCCCAATTGGTTCTGTTATCGGT
Found at i:45844152 original size:16 final size:17
Alignment explanation
Indices: 45844120--45844152 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
45844110 AAATAAGAAG
45844120 GGTTTTCAATGAAAACAT
1 GGTTTTCAA-GAAAACAT
45844138 GGTTTTCAA-AAAACA
1 GGTTTTCAAGAAAACA
45844153 CTTTAATGTG
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
18 9 0.60
ACGTcount: A:0.42, C:0.12, G:0.15, T:0.30
Consensus pattern (17 bp):
GGTTTTCAAGAAAACAT
Found at i:45848916 original size:43 final size:43
Alignment explanation
Indices: 45848847--45848951 Score: 122
Period size: 43 Copynumber: 2.4 Consensus size: 43
45848837 CAATGCCATA
* * * * *
45848847 TCCTAGATATGGTCTTACGTGTAATCACATATCGATCCCACTG
1 TCCTAGATATGGTCTTACATGAAATCAAATAACGATCCCAATG
* *
45848890 TCCTAGATAGGGTCTTACATGAAATCAAATAACGATGCCAATG
1 TCCTAGATATGGTCTTACATGAAATCAAATAACGATCCCAATG
*
45848933 T-CTCAGACATGGTCTTACA
1 TCCT-AGATATGGTCTTACA
45848952 CGTGTTCAAA
Statistics
Matches: 52, Mismatches: 9, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
42 2 0.04
43 50 0.96
ACGTcount: A:0.30, C:0.23, G:0.17, T:0.30
Consensus pattern (43 bp):
TCCTAGATATGGTCTTACATGAAATCAAATAACGATCCCAATG
Found at i:45853981 original size:42 final size:42
Alignment explanation
Indices: 45853871--45854026 Score: 188
Period size: 42 Copynumber: 3.7 Consensus size: 42
45853861 TATCATACCA
* * * * ** *
45853871 ATGCCATATTCTAGATATGGTCTTCCATG-GGATCTCATTTCA
1 ATGCCATATCCCAGATATGGTCTTACATGAAG-TCTCACATCG
* * *
45853913 ATGCCAATAGCCCAGCTATGGTCTTACACGAAGTCTCACATCG
1 ATGCC-ATATCCCAGATATGGTCTTACATGAAGTCTCACATCG
*
45853956 ATGCCATATTCCAGATATGGTCTTACATGAAGTCTCACATCG
1 ATGCCATATCCCAGATATGGTCTTACATGAAGTCTCACATCG
45853998 ATGCCATATCCCAGATATGGTCTTACATG
1 ATGCCATATCCCAGATATGGTCTTACATG
45854027 TAATCTTCAC
Statistics
Matches: 97, Mismatches: 15, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
42 66 0.68
43 30 0.31
44 1 0.01
ACGTcount: A:0.27, C:0.25, G:0.17, T:0.31
Consensus pattern (42 bp):
ATGCCATATCCCAGATATGGTCTTACATGAAGTCTCACATCG
Found at i:45856170 original size:37 final size:38
Alignment explanation
Indices: 45856129--45856213 Score: 113
Period size: 38 Copynumber: 2.3 Consensus size: 38
45856119 TTGAGCAAAG
45856129 TTTGCTCTTTATTTTTT-AGAATTTGAG-CAATCTTTTC
1 TTTGCTCTTTATTTTTTCAGAATTTGAGTCAA-CTTTTC
*
45856166 TTTGCTC-TTATTTTTTCCAGAATTTGAGTGAACTTTTC
1 TTTGCTCTTTATTTTTT-CAGAATTTGAGTCAACTTTTC
*
45856204 TTTGTTCTTT
1 TTTGCTCTTT
45856214 GGTCATTTTC
Statistics
Matches: 42, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
36 9 0.21
37 7 0.17
38 22 0.52
39 4 0.10
ACGTcount: A:0.16, C:0.14, G:0.12, T:0.58
Consensus pattern (38 bp):
TTTGCTCTTTATTTTTTCAGAATTTGAGTCAACTTTTC
Found at i:45866596 original size:40 final size:40
Alignment explanation
Indices: 45866541--45866675 Score: 186
Period size: 40 Copynumber: 3.4 Consensus size: 40
45866531 GATGATAACG
45866541 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
* *
45866581 GGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACGATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
* *
45866621 GGGCTATGTCCCGAAGGCA-TTGAGCGAG-TAGCTATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATATCC
* *
45866660 -GGTTAAATCCCGAAGG
1 GGGCTAAGTCCCGAAGG
45866676 TACGTGGCTT
Statistics
Matches: 85, Mismatches: 9, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
38 15 0.18
39 14 0.16
40 56 0.66
ACGTcount: A:0.24, C:0.22, G:0.30, T:0.24
Consensus pattern (40 bp):
GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
Found at i:45868173 original size:23 final size:23
Alignment explanation
Indices: 45868147--45868208 Score: 88
Period size: 23 Copynumber: 2.7 Consensus size: 23
45868137 AAGCTCATAC
*
45868147 GAGCTAAAATGGTAAGCTCCAAT
1 GAGCTGAAATGGTAAGCTCCAAT
* *
45868170 GAGCTGAAACGGTATGCTCCAAT
1 GAGCTGAAATGGTAAGCTCCAAT
*
45868193 GAGCTGAAATAGTAAG
1 GAGCTGAAATGGTAAG
45868209 ATCTTACGAG
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
23 33 1.00
ACGTcount: A:0.37, C:0.16, G:0.26, T:0.21
Consensus pattern (23 bp):
GAGCTGAAATGGTAAGCTCCAAT
Found at i:45868773 original size:30 final size:30
Alignment explanation
Indices: 45868737--45868797 Score: 122
Period size: 30 Copynumber: 2.0 Consensus size: 30
45868727 ACTATATACT
45868737 ATTAGCAGCCCATATCTTTCATTATTTCAC
1 ATTAGCAGCCCATATCTTTCATTATTTCAC
45868767 ATTAGCAGCCCATATCTTTCATTATTTCAC
1 ATTAGCAGCCCATATCTTTCATTATTTCAC
45868797 A
1 A
45868798 CTTTTAACCA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.28, C:0.26, G:0.07, T:0.39
Consensus pattern (30 bp):
ATTAGCAGCCCATATCTTTCATTATTTCAC
Found at i:45874379 original size:16 final size:16
Alignment explanation
Indices: 45874329--45874373 Score: 81
Period size: 16 Copynumber: 2.8 Consensus size: 16
45874319 GTAGATCGAC
45874329 AAATCCCGAAAAGTCG
1 AAATCCCGAAAAGTCG
45874345 AAATCCCGAAAAGTCG
1 AAATCCCGAAAAGTCG
*
45874361 AAATGCCGAAAAG
1 AAATCCCGAAAAG
45874374 CTGAAAGTTT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
16 28 1.00
ACGTcount: A:0.47, C:0.22, G:0.20, T:0.11
Consensus pattern (16 bp):
AAATCCCGAAAAGTCG
Found at i:45874634 original size:28 final size:28
Alignment explanation
Indices: 45874602--45874705 Score: 129
Period size: 28 Copynumber: 3.7 Consensus size: 28
45874592 TAAATGCGAT
*
45874602 TTGGGCCTAGT-GGCCATATGAATGTGA
1 TTGGGCCTAATGGGCCATATGAATGTGA
* *
45874629 TTTGGGCCTAATGGGCCACATAAATGTGA
1 -TTGGGCCTAATGGGCCATATGAATGTGA
* * *
45874658 ATGGGCCTAATGGGCCATATGAAAGAGA
1 TTGGGCCTAATGGGCCATATGAATGTGA
*
45874686 TTGGGCCTAGTGGGCCATAT
1 TTGGGCCTAATGGGCCATAT
45874706 CTATAGGTAT
Statistics
Matches: 65, Mismatches: 10, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
28 51 0.78
29 14 0.22
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (28 bp):
TTGGGCCTAATGGGCCATATGAATGTGA
Found at i:45878311 original size:40 final size:40
Alignment explanation
Indices: 45878230--45878450 Score: 331
Period size: 40 Copynumber: 5.6 Consensus size: 40
45878220 AAACCAAGTA
** * *
45878230 CCTTCGGGGTTTAG-CCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGTTATAG-TAACTCGCACAAATG
*
45878269 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAATTG
1 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
*
45878309 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAATTG
1 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
*
45878349 CCTTCGGGACTTGGCCCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
*
45878389 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
*
45878429 CCTTCGGG-CTTAACCCGGTTAT
1 CCTTCGGGACTTAGCCCGGTTAT
45878451 CAATCCGAAT
Statistics
Matches: 169, Mismatches: 11, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
39 25 0.15
40 144 0.85
ACGTcount: A:0.22, C:0.28, G:0.24, T:0.27
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
Found at i:45889284 original size:18 final size:19
Alignment explanation
Indices: 45889261--45889303 Score: 52
Period size: 18 Copynumber: 2.3 Consensus size: 19
45889251 TAGACAAGTG
45889261 GGCCCACAGGGCCCATT-A
1 GGCCCACAGGGCCCATTGA
***
45889279 GGCCCATTTGGCCCATTGA
1 GGCCCACAGGGCCCATTGA
45889298 GGCCCA
1 GGCCCA
45889304 ATACACGAGA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
18 14 0.67
19 7 0.33
ACGTcount: A:0.19, C:0.37, G:0.28, T:0.16
Consensus pattern (19 bp):
GGCCCACAGGGCCCATTGA
Found at i:45889303 original size:10 final size:9
Alignment explanation
Indices: 45889270--45889303 Score: 50
Period size: 9 Copynumber: 3.7 Consensus size: 9
45889260 GGGCCCACAG
45889270 GGCCCATTA
1 GGCCCATTA
*
45889279 GGCCCATTT
1 GGCCCATTA
45889288 GGCCCATTGA
1 GGCCCATT-A
45889298 GGCCCA
1 GGCCCA
45889304 ATACACGAGA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
9 16 0.73
10 6 0.27
ACGTcount: A:0.18, C:0.35, G:0.26, T:0.21
Consensus pattern (9 bp):
GGCCCATTA
Found at i:45894705 original size:12 final size:12
Alignment explanation
Indices: 45894688--45894720 Score: 57
Period size: 12 Copynumber: 2.8 Consensus size: 12
45894678 TTTAGCACTT
45894688 CCTCGGCCTCTA
1 CCTCGGCCTCTA
45894700 CCTCGGCCTCTA
1 CCTCGGCCTCTA
*
45894712 TCTCGGCCT
1 CCTCGGCCT
45894721 TATGTACCCC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.06, C:0.48, G:0.18, T:0.27
Consensus pattern (12 bp):
CCTCGGCCTCTA
Found at i:45896107 original size:28 final size:28
Alignment explanation
Indices: 45896064--45896123 Score: 75
Period size: 28 Copynumber: 2.1 Consensus size: 28
45896054 CTATCTCTAA
* * *
45896064 GGTATAATAGTCATTTTCACCCATTAGG
1 GGTAGAATAGTAATTTTCACCCATCAGG
* *
45896092 GGTAGAATAGTAATTTTTACCCCTCAGG
1 GGTAGAATAGTAATTTTCACCCATCAGG
45896120 GGTA
1 GGTA
45896124 TTTTGGTCAT
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.28, C:0.17, G:0.22, T:0.33
Consensus pattern (28 bp):
GGTAGAATAGTAATTTTCACCCATCAGG
Found at i:45898627 original size:27 final size:27
Alignment explanation
Indices: 45898597--45898770 Score: 215
Period size: 27 Copynumber: 6.4 Consensus size: 27
45898587 TGAGTCCGCT
* * * *
45898597 CACTCAGTGCTATATAATCAACTCGCA
1 CACTTAGTGCTACATAGTCAAATCGCA
* *
45898624 CACTTAGTGCTACGTAATCAAATCGCA
1 CACTTAGTGCTACATAGTCAAATCGCA
45898651 CACTTAGTGCTACATAGTCAAACTCGCA
1 CACTTAGTGCTACATAGTCAAA-TCGCA
** * *
45898679 CACTTAGTGCCGCATGGTCAATTCGCA
1 CACTTAGTGCTACATAGTCAAATCGCA
*
45898706 CACTTAGTGC-ATCATATTCAAATCGCA
1 CACTTAGTGCTA-CATAGTCAAATCGCA
*
45898733 CACTTAGTGCAACATAGTCAAATCGCA
1 CACTTAGTGCTACATAGTCAAATCGCA
45898760 CACTTAGTGCT
1 CACTTAGTGCT
45898771 GTACAATTTA
Statistics
Matches: 128, Mismatches: 16, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
27 104 0.81
28 24 0.19
ACGTcount: A:0.31, C:0.28, G:0.15, T:0.26
Consensus pattern (27 bp):
CACTTAGTGCTACATAGTCAAATCGCA
Found at i:45898739 original size:82 final size:81
Alignment explanation
Indices: 45898614--45898769 Score: 251
Period size: 82 Copynumber: 1.9 Consensus size: 81
45898604 TGCTATATAA
* *
45898614 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
45898679 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* *
45898696 TCAATTCGCACACTTAGTGC-ATCATATTCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
45898760 CACTTAGTGC
65 CACTTAGTGC
45898770 TGTACAATTT
Statistics
Matches: 69, Mismatches: 4, Indels: 3
0.91 0.05 0.04
Matches are distributed among these distances:
81 16 0.23
82 53 0.77
ACGTcount: A:0.31, C:0.28, G:0.15, T:0.26
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:45905868 original size:27 final size:27
Alignment explanation
Indices: 45905838--45906015 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
45905828 ATATTGAGTC
* * * *
45905838 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
45905865 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
45905892 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
45905920 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
45905947 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
45905974 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
45906001 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
45906016 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:45905977 original size:82 final size:81
Alignment explanation
Indices: 45905859--45906014 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
45905849 TGCTATATAA
* *
45905859 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
45905924 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
45905941 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
45906005 CACTTAGTGC
65 CACTTAGTGC
45906015 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:45914051 original size:40 final size:40
Alignment explanation
Indices: 45913953--45914215 Score: 316
Period size: 40 Copynumber: 6.6 Consensus size: 40
45913943 TCCTCGTTCA
* * * * *
45913953 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
45913992 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
*
45914032 ACTGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
45914072 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
45914112 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * * * * *
45914152 AAGGCCTTC-GGATCTTAATCCGGATATATTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACG
* *
45914192 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
45914216 CAGCATTCAA
Statistics
Matches: 198, Mismatches: 22, Indels: 7
0.87 0.10 0.03
Matches are distributed among these distances:
39 37 0.19
40 153 0.77
41 8 0.04
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:45916411 original size:25 final size:25
Alignment explanation
Indices: 45916377--45916424 Score: 96
Period size: 25 Copynumber: 1.9 Consensus size: 25
45916367 AAATACCCTT
45916377 CCACACTTAAGATGTACATTGCCTC
1 CCACACTTAAGATGTACATTGCCTC
45916402 CCACACTTAAGATGTACATTGCC
1 CCACACTTAAGATGTACATTGCC
45916425 CTCAATGTAC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.29, C:0.31, G:0.12, T:0.27
Consensus pattern (25 bp):
CCACACTTAAGATGTACATTGCCTC
Found at i:45924336 original size:10 final size:10
Alignment explanation
Indices: 45924321--45924349 Score: 58
Period size: 10 Copynumber: 2.9 Consensus size: 10
45924311 ACAACAACCC
45924321 CATTCAAACT
1 CATTCAAACT
45924331 CATTCAAACT
1 CATTCAAACT
45924341 CATTCAAAC
1 CATTCAAAC
45924350 ACAACTTTCT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.41, C:0.31, G:0.00, T:0.28
Consensus pattern (10 bp):
CATTCAAACT
Found at i:45924921 original size:13 final size:13
Alignment explanation
Indices: 45924903--45924934 Score: 64
Period size: 13 Copynumber: 2.5 Consensus size: 13
45924893 AAATTTTATC
45924903 ATTTGAGTGCTTA
1 ATTTGAGTGCTTA
45924916 ATTTGAGTGCTTA
1 ATTTGAGTGCTTA
45924929 ATTTGA
1 ATTTGA
45924935 TAAAAAAAGA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.25, C:0.06, G:0.22, T:0.47
Consensus pattern (13 bp):
ATTTGAGTGCTTA
Found at i:45925400 original size:21 final size:20
Alignment explanation
Indices: 45925368--45925408 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 20
45925358 ATAAGCATGT
45925368 ATTTTGATGTTTGATGATAG
1 ATTTTGATGTTTGATGATAG
45925388 ATTTTGAATGTTTGATGATAG
1 ATTTTG-ATGTTTGATGATAG
45925409 TTATACAAGT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 6 0.30
21 14 0.70
ACGTcount: A:0.27, C:0.00, G:0.24, T:0.49
Consensus pattern (20 bp):
ATTTTGATGTTTGATGATAG
Found at i:45929528 original size:47 final size:47
Alignment explanation
Indices: 45929469--45929590 Score: 217
Period size: 47 Copynumber: 2.6 Consensus size: 47
45929459 GCATTGGCAC
*
45929469 TAAGACAAGGATACCATGTAAGACCATGTTTGGTACATGGCATTTGG
1 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
45929516 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
1 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
* *
45929563 TAAGATAAGGATATCATGTAAGACCATG
1 TAAGACAAGGATACCATGTAAGACCATG
45929591 CCAAGGCATG
Statistics
Matches: 72, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
47 72 1.00
ACGTcount: A:0.35, C:0.14, G:0.25, T:0.26
Consensus pattern (47 bp):
TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
Found at i:45930316 original size:6 final size:6
Alignment explanation
Indices: 45930305--45930491 Score: 174
Period size: 6 Copynumber: 30.8 Consensus size: 6
45930295 AACCAAAATG
*
45930305 AGAATC AGAATC AGTAA-C AGAATC AGAATC AGAATC A-ATATT AGTAA-C
1 AGAATC AGAATC AG-AATC AGAATC AGAATC AGAATC AGA-ATC AG-AATC
* *
45930353 AGAATC AGAATC AGAATC AGAATT AG-GTGAC AGAATC AGAATC AGAATC
1 AGAATC AGAATC AGAATC AGAATC AGAAT--C AGAATC AGAATC AGAATC
* * *
45930402 AGAATC AGTAA-C AGAATC AGAATC AGAATT AGTATT AGCAA-C AGAATC
1 AGAATC AG-AATC AGAATC AGAATC AGAATC AGAATC AG-AATC AGAATC
45930450 AGAATC AGAATC AGAATTAC ATG-A-C AGAATC AGAATC AGAAT
1 AGAATC AGAATC AGAA-T-C A-GAATC AGAATC AGAATC AGAAT
45930492 GTGAATGCAA
Statistics
Matches: 153, Mismatches: 10, Indels: 36
0.77 0.05 0.18
Matches are distributed among these distances:
4 1 0.01
5 13 0.08
6 124 0.81
7 9 0.06
8 5 0.03
9 1 0.01
ACGTcount: A:0.49, C:0.14, G:0.17, T:0.20
Consensus pattern (6 bp):
AGAATC
Found at i:45930318 original size:30 final size:30
Alignment explanation
Indices: 45930284--45930491 Score: 111
Period size: 30 Copynumber: 7.1 Consensus size: 30
45930274 AAGAAACATT
* *
45930284 ATCAGAATT-GGAACCAAAATGAGAATCAGA
1 ATCAGAATTAGGAA-CAGAATCAGAATCAGA
*
45930314 ATCAGTAA-CA-GAATCAGAATCAGAATCA-A
1 ATCAG-AATTAGGAA-CAGAATCAGAATCAGA
* *
45930343 TATTAGTAA-CA-GAATCAGAATCAGAATCAGA
1 -ATCAG-AATTAGGAA-CAGAATCAGAATCAGA
* * * *
45930374 ATTAG-GTGACAGAATCAGAATCAGAATCAGA
1 ATCAGAATTA-GGAA-CAGAATCAGAATCAGA
45930405 ATCAG---T---AACAGAATCAGAATCAGA
1 ATCAGAATTAGGAACAGAATCAGAATCAGA
* * *
45930429 ATTAGTATTAGCAACAGAATCAGAATCAGA
1 ATCAGAATTAGGAACAGAATCAGAATCAGA
*
45930459 ATCAGAATTA-CATGACAGAATCAGAATCAGA
1 ATCAGAATTAGGA--ACAGAATCAGAATCAGA
45930490 AT
1 AT
45930492 GTGAATGCAA
Statistics
Matches: 151, Mismatches: 12, Indels: 29
0.79 0.06 0.15
Matches are distributed among these distances:
24 20 0.13
25 2 0.01
27 1 0.01
29 4 0.03
30 78 0.52
31 46 0.30
ACGTcount: A:0.49, C:0.14, G:0.17, T:0.20
Consensus pattern (30 bp):
ATCAGAATTAGGAACAGAATCAGAATCAGA
Found at i:45930447 original size:91 final size:91
Alignment explanation
Indices: 45930305--45930491 Score: 329
Period size: 91 Copynumber: 2.1 Consensus size: 91
45930295 AACCAAAATG
*
45930305 AGAATCAGAATCAGTAACAGAATCAGAATCAGAATCAATATTAGTAACAGAATCAGAATCAGAAT
1 AGAATCAGAATCAGTAACAGAATCAGAATCAGAATCAATATTAGCAACAGAATCAGAATCAGAAT
**
45930370 CAGAATTAGGTGACAGAATCAGAATC
66 CAGAATTACATGACAGAATCAGAATC
* *
45930396 AGAATCAGAATCAGTAACAGAATCAGAATCAGAATTAGTATTAGCAACAGAATCAGAATCAGAAT
1 AGAATCAGAATCAGTAACAGAATCAGAATCAGAATCAATATTAGCAACAGAATCAGAATCAGAAT
45930461 CAGAATTACATGACAGAATCAGAATC
66 CAGAATTACATGACAGAATCAGAATC
45930487 AGAAT
1 AGAAT
45930492 GTGAATGCAA
Statistics
Matches: 91, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
91 91 1.00
ACGTcount: A:0.49, C:0.14, G:0.17, T:0.20
Consensus pattern (91 bp):
AGAATCAGAATCAGTAACAGAATCAGAATCAGAATCAATATTAGCAACAGAATCAGAATCAGAAT
CAGAATTACATGACAGAATCAGAATC
Found at i:45930646 original size:27 final size:26
Alignment explanation
Indices: 45930609--45930674 Score: 87
Period size: 27 Copynumber: 2.5 Consensus size: 26
45930599 AGCATGGCTG
*
45930609 CCAGAACAGATATCGTGACAGAGTCA
1 CCAGAACAGATATCGTGACAGAGCCA
* *
45930635 CCAGATACAGATATTGTGGCAGAGCCA
1 CCAGA-ACAGATATCGTGACAGAGCCA
45930662 CCAGAATCAGATA
1 CCAGAA-CAGATA
45930675 ATGTGGCAAA
Statistics
Matches: 35, Mismatches: 3, Indels: 3
0.85 0.07 0.07
Matches are distributed among these distances:
26 6 0.17
27 29 0.83
ACGTcount: A:0.38, C:0.23, G:0.23, T:0.17
Consensus pattern (26 bp):
CCAGAACAGATATCGTGACAGAGCCA
Found at i:45930679 original size:27 final size:27
Alignment explanation
Indices: 45930609--45930682 Score: 82
Period size: 27 Copynumber: 2.8 Consensus size: 27
45930599 AGCATGGCTG
* *
45930609 CCAGAA-CAGAT-ATCGTGACAGAGTCA
1 CCAGAATCAGATAAT-GTGGCAGAGCCA
*
45930635 CCAG-ATACAGATATTGTGGCAGAGCCA
1 CCAGAAT-CAGATAATGTGGCAGAGCCA
45930662 CCAGAATCAGATAATGTGGCA
1 CCAGAATCAGATAATGTGGCA
45930683 AACCCACCTA
Statistics
Matches: 40, Mismatches: 4, Indels: 7
0.78 0.08 0.14
Matches are distributed among these distances:
25 1 0.03
26 4 0.10
27 32 0.80
28 3 0.08
ACGTcount: A:0.36, C:0.22, G:0.24, T:0.18
Consensus pattern (27 bp):
CCAGAATCAGATAATGTGGCAGAGCCA
Found at i:45930689 original size:27 final size:27
Alignment explanation
Indices: 45930633--45930690 Score: 73
Period size: 27 Copynumber: 2.1 Consensus size: 27
45930623 GTGACAGAGT
* * *
45930633 CACCAGATACAGATATTGTGGCAGAGC
1 CACCAGATACAGATAATGTGGCAAACC
45930660 CACCAGA-ATCAGATAATGTGGCAAACC
1 CACCAGATA-CAGATAATGTGGCAAACC
45930687 CACC
1 CACC
45930691 TAACAGAATA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
26 1 0.04
27 26 0.96
ACGTcount: A:0.36, C:0.28, G:0.21, T:0.16
Consensus pattern (27 bp):
CACCAGATACAGATAATGTGGCAAACC
Found at i:45933081 original size:23 final size:22
Alignment explanation
Indices: 45933029--45933081 Score: 56
Period size: 23 Copynumber: 2.4 Consensus size: 22
45933019 TCCACGTCTT
*
45933029 TTTCTTTTGTTTCTTTTTCTAA
1 TTTCTTTTCTTTCTTTTTCTAA
45933051 -TTCATTTTCTCTTCTTTCTTC-AA
1 TTTC-TTTTCT-TTCTTT-TTCTAA
45933074 TTTCTTTT
1 TTTCTTTT
45933082 TCACTCTCAA
Statistics
Matches: 26, Mismatches: 1, Indels: 7
0.76 0.03 0.21
Matches are distributed among these distances:
21 3 0.12
22 5 0.19
23 12 0.46
24 6 0.23
ACGTcount: A:0.09, C:0.19, G:0.02, T:0.70
Consensus pattern (22 bp):
TTTCTTTTCTTTCTTTTTCTAA
Found at i:45935657 original size:22 final size:22
Alignment explanation
Indices: 45935609--45935667 Score: 64
Period size: 22 Copynumber: 2.7 Consensus size: 22
45935599 GTAAATACGT
*
45935609 TTGGCACGAAGCCATAGTCAAG
1 TTGGCACAAAGCCATAGTCAAG
* * * *
45935631 ATGGCACAAAGCCATATTTAGG
1 TTGGCACAAAGCCATAGTCAAG
*
45935653 TTGGCACAGAGCCAT
1 TTGGCACAAAGCCAT
45935668 TAATAACGGG
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.32, C:0.22, G:0.25, T:0.20
Consensus pattern (22 bp):
TTGGCACAAAGCCATAGTCAAG
Found at i:45935800 original size:27 final size:26
Alignment explanation
Indices: 45935755--45935833 Score: 86
Period size: 27 Copynumber: 3.0 Consensus size: 26
45935745 TCGATCGGTC
** *
45935755 AACAGATATTGTGATAGAGTCACCAA
1 AACAGATATTGTGGCAGAGCCACCAA
*
45935781 ATACAGATATTGTGGCAGAGCCACCAG
1 A-ACAGATATTGTGGCAGAGCCACCAA
* *
45935808 AACAAATATTTGTGGCATAGCCACCA
1 AACAGATA-TTGTGGCAGAGCCACCA
45935834 GAACGCTTCC
Statistics
Matches: 45, Mismatches: 6, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
26 7 0.16
27 38 0.84
ACGTcount: A:0.38, C:0.20, G:0.20, T:0.22
Consensus pattern (26 bp):
AACAGATATTGTGGCAGAGCCACCAA
Found at i:45936064 original size:27 final size:27
Alignment explanation
Indices: 45936036--45936221 Score: 149
Period size: 27 Copynumber: 6.9 Consensus size: 27
45936026 GGCAAAATGG
* * * *
45936036 TAATTTTACCCCACAATGGTATCTCGG
1 TAATTCTACCCCACAAGGGTATTTCGA
* *
45936063 TAATTCTACCCTACAGGGGTATTTCGA
1 TAATTCTACCCCACAAGGGTATTTCGA
*
45936090 TATTTCTACCCCACAAGGGTATTTCGA
1 TAATTCTACCCCACAAGGGTATTTCGA
* * * *
45936117 TAATTCTACCCTACAGGGGTATTTTGG
1 TAATTCTACCCCACAAGGGTATTTCGA
* * * *
45936144 TAATTCTATCCTATAAGGGTATTT-TA
1 TAATTCTACCCCACAAGGGTATTTCGA
* * * * *
45936170 GTAATTCCACCCTATAGGGGTATTTCAA
1 -TAATTCTACCCCACAAGGGTATTTCGA
* * *
45936198 AAATTCTACCCTACAGGGGTATTT
1 TAATTCTACCCCACAAGGGTATTT
45936222 TAGTAATTTC
Statistics
Matches: 131, Mismatches: 26, Indels: 4
0.81 0.16 0.02
Matches are distributed among these distances:
27 130 0.99
28 1 0.01
ACGTcount: A:0.27, C:0.21, G:0.17, T:0.35
Consensus pattern (27 bp):
TAATTCTACCCCACAAGGGTATTTCGA
Found at i:45936136 original size:54 final size:54
Alignment explanation
Indices: 45936036--45936221 Score: 203
Period size: 54 Copynumber: 3.4 Consensus size: 54
45936026 GGCAAAATGG
* * * *
45936036 TAATTTTACCCCACAATGGTATCTCGGTAATTCTACCCTACAGGGGTATTTCGA
1 TAATTCTACCCCACAAGGGTATTTCGATAATTCTACCCTACAGGGGTATTTCGA
* * *
45936090 TATTTCTACCCCACAAGGGTATTTCGATAATTCTACCCTACAGGGGTATTTTGG
1 TAATTCTACCCCACAAGGGTATTTCGATAATTCTACCCTACAGGGGTATTTCGA
* * * * * * *
45936144 TAATTCTATCCTATAAGGGTATTT-TAGTAATTCCACCCTATAGGGGTATTTCAA
1 TAATTCTACCCCACAAGGGTATTTCGA-TAATTCTACCCTACAGGGGTATTTCGA
* * *
45936198 AAATTCTACCCTACAGGGGTATTT
1 TAATTCTACCCCACAAGGGTATTT
45936222 TAGTAATTTC
Statistics
Matches: 110, Mismatches: 21, Indels: 2
0.83 0.16 0.02
Matches are distributed among these distances:
53 1 0.01
54 109 0.99
ACGTcount: A:0.27, C:0.21, G:0.17, T:0.35
Consensus pattern (54 bp):
TAATTCTACCCCACAAGGGTATTTCGATAATTCTACCCTACAGGGGTATTTCGA
Found at i:45936222 original size:54 final size:54
Alignment explanation
Indices: 45936062--45936229 Score: 212
Period size: 54 Copynumber: 3.1 Consensus size: 54
45936052 TGGTATCTCG
* * *
45936062 GTAATTCTACCCTACAGGGGTATTTCGATATTTCTACCCCACAAGGGTA-TTTC
1 GTAATTCTACCCTACAGGGGTATTTCGATAATTCTACCCTACAAGGGTATTTTA
* * * *
45936115 GATAATTCTACCCTACAGGGGTATTTTGGTAATTCTATCCTATAAGGGTATTTTA
1 G-TAATTCTACCCTACAGGGGTATTTCGATAATTCTACCCTACAAGGGTATTTTA
* * * * *
45936170 GTAATTCCACCCTATAGGGGTATTTCAAAAATTCTACCCTACAGGGGTATTTTA
1 GTAATTCTACCCTACAGGGGTATTTCGATAATTCTACCCTACAAGGGTATTTTA
45936224 GTAATT
1 GTAATT
45936230 TCACAATCAA
Statistics
Matches: 97, Mismatches: 16, Indels: 3
0.84 0.14 0.03
Matches are distributed among these distances:
53 1 0.01
54 92 0.95
55 4 0.04
ACGTcount: A:0.27, C:0.19, G:0.17, T:0.36
Consensus pattern (54 bp):
GTAATTCTACCCTACAGGGGTATTTCGATAATTCTACCCTACAAGGGTATTTTA
Found at i:45936229 original size:27 final size:27
Alignment explanation
Indices: 45936062--45936229 Score: 178
Period size: 27 Copynumber: 6.2 Consensus size: 27
45936052 TGGTATCTCG
*
45936062 GTAATTCTACCCTACAGGGGTA-TTTC
1 GTAATTCTACCCTACAGGGGTATTTTA
* * * *
45936088 GATATTTCTACCCCACAAGGGTA-TTTC
1 G-TAATTCTACCCTACAGGGGTATTTTA
*
45936115 GATAATTCTACCCTACAGGGGTATTTTG
1 G-TAATTCTACCCTACAGGGGTATTTTA
* * *
45936143 GTAATTCTATCCTATAAGGGTATTTTA
1 GTAATTCTACCCTACAGGGGTATTTTA
* * *
45936170 GTAATTCCACCCTATAGGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTTA
**
45936197 AAAATTCTACCCTACAGGGGTATTTTA
1 GTAATTCTACCCTACAGGGGTATTTTA
45936224 GTAATT
1 GTAATT
45936230 TCACAATCAA
Statistics
Matches: 118, Mismatches: 22, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
26 1 0.01
27 113 0.96
28 4 0.03
ACGTcount: A:0.27, C:0.19, G:0.17, T:0.36
Consensus pattern (27 bp):
GTAATTCTACCCTACAGGGGTATTTTA
Found at i:45936264 original size:27 final size:27
Alignment explanation
Indices: 45936234--45936912 Score: 775
Period size: 27 Copynumber: 25.2 Consensus size: 27
45936224 GTAATTTCAC
*
45936234 AATCAAGGGTAAAACGGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* * *
45936261 AATCGAGGATAAAACGATAATTTTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* * *
45936288 AA-CTGAGGGTAAACCAGTAATTTTGTA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
* * * **
45936315 AATCAAGCGTAAAACGGTAATTTTACA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* *
45936342 AATTGAGGCTAAAACGGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
*
45936369 AATCGAGGGTAAAACAGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
*
45936396 AA-CTGAGGGTAAAACGGTAATTTTGTA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
**
45936423 AATCGAGGGTAAAATAGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
*
45936450 AA-CTGAGGGTAAAACGGTAATTCTATA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
** *
45936477 AATCGAGGGTAAAATAGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTGTA
*
45936504 AA-CTGAGGGTAAAACGATAATTCTGTA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
* **
45936531 AATCGAGGGTAAAACGGTAATTTTACA
1 AATCGAGGGTAAAACGGTAATTCTGTA
*
45936558 AATCGAGGGTAAAACGGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTGTA
*
45936585 AA-CTGAGGGTAAAACGGTAATTTTGTA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
*
45936612 AATCGAGGGTAAAACGGTAATTTTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
*
45936639 AA-CTGGGGGTAAAACGGTAATTCTGTA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
***
45936666 AATCGAGGGTAAAATAATAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
*
45936693 AA-CTGAGGGTAAAACGATAATTCTGTA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
* **
45936720 AATCGAGGGT-AAACGGTAATTTTACA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* *
45936746 AATCAAGGGTAAAACGGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTGTA
**
45936773 AATCGAGGGTAAAACATTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
*
45936800 AA-CTGAGGGTAAAATGGTAATTCTGTA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
* *
45936827 AATCGAGGGTAAAACGGTAATTTTATA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* *
45936854 AA-CTGAGGGTAAAATGGTAATTCTTTA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
* *
45936881 AATCGAGGGTAAAACAGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTGTA
45936908 AATCG
1 AATCG
45936913 GGAGTACTTT
Statistics
Matches: 556, Mismatches: 77, Indels: 38
0.83 0.11 0.06
Matches are distributed among these distances:
26 30 0.05
27 517 0.93
28 9 0.02
ACGTcount: A:0.40, C:0.10, G:0.22, T:0.28
Consensus pattern (27 bp):
AATCGAGGGTAAAACGGTAATTCTGTA
Found at i:45938921 original size:6 final size:6
Alignment explanation
Indices: 45938910--45939069 Score: 129
Period size: 6 Copynumber: 26.8 Consensus size: 6
45938900 AACCAAAATG
* *
45938910 AGAATC AGAATC A-ATATT AGTAA-C AGAATC AGAAT- AGAATC AGAATT
1 AGAATC AGAATC AGA-ATC AG-AATC AGAATC AGAATC AGAATC AGAATC
* *
45938957 AGTGA-C AGAATC A-AATC AGAATC AGTAA-C AGAATC AGAATC AGAATT
1 AG-AATC AGAATC AGAATC AGAATC AG-AATC AGAATC AGAATC AGAATC
* * * *
45939004 AGTATT AGTAA-C AGAATC AGAATC AGAATC AGAATC AGAATT ACGTGA-C
1 AGAATC AG-AATC AGAATC AGAATC AGAATC AGAATC AGAATC A-G-AATC
45939053 AGAATC AGAATC AGAAT
1 AGAATC AGAATC AGAAT
45939070 GTGAATGCAA
Statistics
Matches: 125, Mismatches: 14, Indels: 30
0.74 0.08 0.18
Matches are distributed among these distances:
5 19 0.15
6 97 0.78
7 7 0.06
8 2 0.02
ACGTcount: A:0.49, C:0.13, G:0.17, T:0.21
Consensus pattern (6 bp):
AGAATC
Found at i:45939016 original size:30 final size:30
Alignment explanation
Indices: 45938911--45939041 Score: 145
Period size: 30 Copynumber: 4.6 Consensus size: 30
45938901 ACCAAAATGA
*
45938911 GAATCAGAATCA-ATATTAGTAACAGAATCA
1 GAATCAGAATCAGA-ATCAGTAACAGAATCA
*
45938941 GAAT-AGAATCAGAATTAGT----G-A-CA
1 GAATCAGAATCAGAATCAGTAACAGAATCA
45938964 GAATCA-AATCAGAATCAGTAACAGAATCA
1 GAATCAGAATCAGAATCAGTAACAGAATCA
* * *
45938993 GAATCAGAATTAGTATTAGTAACAGAATCA
1 GAATCAGAATCAGAATCAGTAACAGAATCA
45939023 GAATCAGAATCAGAATCAG
1 GAATCAGAATCAGAATCAG
45939042 AATTACGTGA
Statistics
Matches: 85, Mismatches: 7, Indels: 18
0.77 0.06 0.16
Matches are distributed among these distances:
23 18 0.21
24 2 0.02
25 1 0.01
27 1 0.01
28 1 0.01
29 21 0.25
30 41 0.48
ACGTcount: A:0.49, C:0.13, G:0.17, T:0.21
Consensus pattern (30 bp):
GAATCAGAATCAGAATCAGTAACAGAATCA
Found at i:45939222 original size:27 final size:26
Alignment explanation
Indices: 45939185--45939250 Score: 78
Period size: 27 Copynumber: 2.5 Consensus size: 26
45939175 AGCATGGCTG
*
45939185 CCAGAACAGATATCGTGACAGAGTCA
1 CCAGAACAGATATCGTGACAGAGCCA
* * *
45939211 CCAGATACAGATATTGTGGCGGAGCCA
1 CCAGA-ACAGATATCGTGACAGAGCCA
45939238 CCAGAATCAGATA
1 CCAGAA-CAGATA
45939251 ATGTGGCAAA
Statistics
Matches: 34, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
26 6 0.18
27 28 0.82
ACGTcount: A:0.36, C:0.23, G:0.24, T:0.17
Consensus pattern (26 bp):
CCAGAACAGATATCGTGACAGAGCCA
Found at i:45939265 original size:27 final size:27
Alignment explanation
Indices: 45939209--45939266 Score: 64
Period size: 27 Copynumber: 2.1 Consensus size: 27
45939199 GTGACAGAGT
* ** *
45939209 CACCAGATACAGATATTGTGGCGGAGC
1 CACCAGATACAGATAATGTGGCAAACC
45939236 CACCAGA-ATCAGATAATGTGGCAAACC
1 CACCAGATA-CAGATAATGTGGCAAACC
45939263 CACC
1 CACC
45939267 CAACAGAATA
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
26 1 0.04
27 25 0.96
ACGTcount: A:0.34, C:0.28, G:0.22, T:0.16
Consensus pattern (27 bp):
CACCAGATACAGATAATGTGGCAAACC
Found at i:45939613 original size:27 final size:28
Alignment explanation
Indices: 45939570--45939650 Score: 96
Period size: 27 Copynumber: 3.0 Consensus size: 28
45939560 CGATCGGTCA
** *
45939570 ACAGATATTGTAACAGAGTCACCA-AAT
1 ACAGATATTGTGGCAGAGCCACCAGAAT
45939597 ACAGATATTGTGGCAGAGCCACCAGAAT
1 ACAGATATTGTGGCAGAGCCACCAGAAT
*
45939625 --AGATATTTGTGGCATAGCCACCAGAA
1 ACAGATA-TTGTGGCAGAGCCACCAGAA
45939651 CGCTTCCTCC
Statistics
Matches: 48, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
26 5 0.10
27 40 0.83
28 3 0.06
ACGTcount: A:0.38, C:0.20, G:0.21, T:0.21
Consensus pattern (28 bp):
ACAGATATTGTGGCAGAGCCACCAGAAT
Found at i:45939880 original size:27 final size:27
Alignment explanation
Indices: 45939850--45940045 Score: 221
Period size: 27 Copynumber: 7.3 Consensus size: 27
45939840 GGGGCAAAAT
* * *
45939850 GGTAATTTTACCCCACAGGGGTATCTC
1 GGTAATTCTACCCTACAGGGGTATTTC
45939877 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * * *
45939904 GGTATTTCAACCCCACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
** *
45939931 GAAAATTCTACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
* * ** *
45939958 GGTAATTCTATCCTATAAAGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
45939985 AGTAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
45940012 GGAAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
45940039 AGTAATT
1 GGTAATT
45940046 TCACAATCAA
Statistics
Matches: 139, Mismatches: 30, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
27 139 1.00
ACGTcount: A:0.27, C:0.20, G:0.19, T:0.34
Consensus pattern (27 bp):
GGTAATTCTACCCTACAGGGGTATTTC
Found at i:45940080 original size:27 final size:27
Alignment explanation
Indices: 45940050--45940560 Score: 596
Period size: 27 Copynumber: 19.1 Consensus size: 27
45940040 GTAATTTCAC
* *
45940050 AATCAAGGGTAAAATGGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* *
45940077 AATCGAGGGTAAAACGATAATTTTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* * *
45940104 AA-CTGAGGGTAAACCAGTAATTCTATA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
*
45940131 AATCGAGGGTAAAACGGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTGTA
** *
45940158 AATCGAGGGTAAAATAGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* * *
45940185 AA-CTAAGGGTAAAATGATAATTCTGTA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
* **
45940212 AATTGAGGGTAAAATAGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
45940239 AA-CTGAGGGTAAAACGGTAATTCTGTA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
* **
45940266 AATCGAGGGTAAAACGGTAATTTTACA
1 AATCGAGGGTAAAACGGTAATTCTGTA
*
45940293 AATCGAGGGTAAAACGGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* *
45940320 AATCGATGGTAAAACAGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* *
45940347 AATTC-AGGGTAAAACGATAATTCTATA
1 AA-TCGAGGGTAAAACGGTAATTCTGTA
* **
45940374 AATCGAGGGTAAAACGGTAATTTTACA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* *
45940401 AATCGAGGGTAAAATGGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTGTA
*
45940428 AATCGAGGGTAAAACAGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
45940455 AA-CTGAGGGTAAAAC-GTAATTCTGTA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
*
45940481 AATTGAGGGTAAAACGGTAATTC-GTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
45940507 AA-CTGAGGGT-AAACGGTAA--CT-TA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
45940530 AATCGAGGGTAAAACGGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
45940557 AATC
1 AATC
45940561 AGTAGTACTT
Statistics
Matches: 419, Mismatches: 47, Indels: 36
0.83 0.09 0.07
Matches are distributed among these distances:
23 11 0.03
24 10 0.02
25 9 0.02
26 42 0.10
27 343 0.82
28 4 0.01
ACGTcount: A:0.41, C:0.10, G:0.22, T:0.28
Consensus pattern (27 bp):
AATCGAGGGTAAAACGGTAATTCTGTA
Found at i:45942574 original size:6 final size:6
Alignment explanation
Indices: 45942563--45942667 Score: 85
Period size: 6 Copynumber: 17.3 Consensus size: 6
45942553 AACCAAAATG
* *
45942563 AGAATC AGAATC AGTAA-C AGAATC AGAATC GGAATC A-ATATT AGTAA-C
1 AGAATC AGAATC AG-AATC AGAATC AGAATC AGAATC AGA-ATC AG-AATC
* *
45942611 AGAATT AG-GTGAC AGAATC AGAATC AGAATC AGTAA-C AGAATC AGAATC
1 AGAATC AGAAT--C AGAATC AGAATC AGAATC AG-AATC AGAATC AGAATC
45942660 AGAATC AG
1 AGAATC AG
45942668 TTTTAGTAAC
Statistics
Matches: 80, Mismatches: 8, Indels: 22
0.73 0.07 0.20
Matches are distributed among these distances:
5 8 0.10
6 63 0.79
7 7 0.09
8 2 0.03
ACGTcount: A:0.48, C:0.14, G:0.19, T:0.19
Consensus pattern (6 bp):
AGAATC
Found at i:45942682 original size:24 final size:24
Alignment explanation
Indices: 45942563--45942668 Score: 107
Period size: 24 Copynumber: 4.6 Consensus size: 24
45942553 AACCAAAATG
45942563 AGAATCAGAATCAGTAACAGAATC
1 AGAATCAGAATCAGTAACAGAATC
* * **
45942587 AGAATCGGAATCAATATTAG--T-
1 AGAATCAGAATCAGTAACAGAATC
* *
45942608 --AA-CAGAATTAGGTGACAGAATC
1 AGAATCAGAATCA-GTAACAGAATC
45942630 AGAATCAGAATCAGTAACAGAATC
1 AGAATCAGAATCAGTAACAGAATC
45942654 AGAATCAGAATCAGT
1 AGAATCAGAATCAGT
45942669 TTTAGTAACA
Statistics
Matches: 63, Mismatches: 12, Indels: 14
0.71 0.13 0.16
Matches are distributed among these distances:
18 6 0.10
19 5 0.08
21 1 0.02
22 1 0.02
24 43 0.68
25 7 0.11
ACGTcount: A:0.47, C:0.14, G:0.19, T:0.20
Consensus pattern (24 bp):
AGAATCAGAATCAGTAACAGAATC
Found at i:45942694 original size:30 final size:30
Alignment explanation
Indices: 45942623--45942725 Score: 109
Period size: 30 Copynumber: 3.4 Consensus size: 30
45942613 AATTAGGTGA
45942623 CAGAATCAGAATCAGAATCAGTAACAGAAT
1 CAGAATCAGAATCAGAATCAGTAACAGAAT
** *
45942653 CAGAATCAGAATCAGTTTTAGTAACAGAAT
1 CAGAATCAGAATCAGAATCAGTAACAGAAT
* * * * *
45942683 TAGAATTAGAATCGGAATTACA-TGACAAAAT
1 CAGAATCAGAATCAGAA-T-CAGTAACAGAAT
45942714 CAGAATCAGAAT
1 CAGAATCAGAAT
45942726 GTGAATGCAA
Statistics
Matches: 58, Mismatches: 13, Indels: 3
0.78 0.18 0.04
Matches are distributed among these distances:
30 39 0.67
31 18 0.31
32 1 0.02
ACGTcount: A:0.48, C:0.14, G:0.17, T:0.22
Consensus pattern (30 bp):
CAGAATCAGAATCAGAATCAGTAACAGAAT
Found at i:45942892 original size:27 final size:27
Alignment explanation
Indices: 45942862--45942916 Score: 69
Period size: 27 Copynumber: 2.0 Consensus size: 27
45942852 ATATCGTGAT
*
45942862 AGAGTCACCAG-ATACAGAT-ATAGTGGC
1 AGAGCCACCAGAAT-CAGATAAT-GTGGC
45942889 AGAGCCACCAGAATCAGATAATGTGGC
1 AGAGCCACCAGAATCAGATAATGTGGC
45942916 A
1 A
45942917 AACCCACCTA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
27 21 0.84
28 4 0.16
ACGTcount: A:0.38, C:0.20, G:0.25, T:0.16
Consensus pattern (27 bp):
AGAGCCACCAGAATCAGATAATGTGGC
Found at i:45942923 original size:27 final size:27
Alignment explanation
Indices: 45942867--45942924 Score: 66
Period size: 27 Copynumber: 2.1 Consensus size: 27
45942857 GTGATAGAGT
* *
45942867 CACCAGATACAGATATAGTGGCAGAGC
1 CACCAGATACAGATATAGTGGCAAACC
45942894 CACCAGA-ATCAGATA-ATGTGGCAAACC
1 CACCAGATA-CAGATATA-GTGGCAAACC
45942921 CACC
1 CACC
45942925 TAACAGAATA
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
26 2 0.07
27 25 0.93
ACGTcount: A:0.38, C:0.28, G:0.21, T:0.14
Consensus pattern (27 bp):
CACCAGATACAGATATAGTGGCAAACC
Found at i:45943296 original size:27 final size:26
Alignment explanation
Indices: 45943227--45943309 Score: 85
Period size: 27 Copynumber: 3.1 Consensus size: 26
45943217 TCGATTGGTC
* *
45943227 AACAGATATTGTGACAGAGTCACCAAG
1 AACAGATATTGTGGCAGAGCCACC-AG
* *
45943254 TACAGATATTGAGGCAGAGCCACCAG
1 AACAGATATTGTGGCAGAGCCACCAG
* * *
45943280 AACAGATATTTTTGGCATAGCCACTAG
1 AACAGATA-TTGTGGCAGAGCCACCAG
45943307 AAC
1 AAC
45943310 GCTTCCTCCG
Statistics
Matches: 46, Mismatches: 9, Indels: 2
0.81 0.16 0.04
Matches are distributed among these distances:
26 9 0.20
27 37 0.80
ACGTcount: A:0.37, C:0.20, G:0.22, T:0.20
Consensus pattern (26 bp):
AACAGATATTGTGGCAGAGCCACCAG
Found at i:45943504 original size:27 final size:27
Alignment explanation
Indices: 45943474--45943668 Score: 239
Period size: 27 Copynumber: 7.2 Consensus size: 27
45943464 GGGTAAAATG
* * * *
45943474 GTAATTTTACCCCACAAGGGTATCTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
*
45943501 GTAATTCTACCCTACAGGGGTATTTCG
1 GTAATTCTACCCTACAGGGGTATTTCA
* * *
45943528 GTATTTCTACCCCACAAGGGTATTTC-
1 GTAATTCTACCCTACAGGGGTATTTCA
**
45943554 GATAATTCTACCCTACAGGGGTATTTTG
1 G-TAATTCTACCCTACAGGGGTATTTCA
* * *
45943582 GTAATTCTATCCTATAAGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
*
45943609 GTAATTCTACCCTATAGGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
*
45943636 GAAATTCTACCCTACAGGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
45943663 GTAATT
1 GTAATT
45943669 TCACAATCAA
Statistics
Matches: 144, Mismatches: 22, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
26 1 0.01
27 142 0.99
28 1 0.01
ACGTcount: A:0.27, C:0.21, G:0.18, T:0.35
Consensus pattern (27 bp):
GTAATTCTACCCTACAGGGGTATTTCA
Found at i:45943539 original size:54 final size:54
Alignment explanation
Indices: 45943473--45943668 Score: 268
Period size: 54 Copynumber: 3.6 Consensus size: 54
45943463 AGGGTAAAAT
* *
45943473 GGTAATTTTACCCCACAAGGGTATCTCAGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCCACAAGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTC
* *
45943527 GGTATTTCTACCCCACAAGGGTATTTC-GATAATTCTACCCTACAGGGGTATTTT
1 GGTAATTCTACCCCACAAGGGTATTTCAG-TAATTCTACCCTACAGGGGTATTTC
* * * *
45943581 GGTAATTCTATCCTATAAGGGTATTTCAGTAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCCACAAGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTC
* * * *
45943635 AGAAATTCTACCCTACAGGGGTATTTCAGTAATT
1 GGTAATTCTACCCCACAAGGGTATTTCAGTAATT
45943669 TCACAATCAA
Statistics
Matches: 125, Mismatches: 15, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
53 1 0.01
54 123 0.98
55 1 0.01
ACGTcount: A:0.27, C:0.20, G:0.18, T:0.35
Consensus pattern (54 bp):
GGTAATTCTACCCCACAAGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTC
Found at i:45943703 original size:27 final size:27
Alignment explanation
Indices: 45943673--45944245 Score: 652
Period size: 27 Copynumber: 21.2 Consensus size: 27
45943663 GTAATTTCAC
* *
45943673 AATCAAGGGTAAAATGGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* *
45943700 AATCGAGGGTAAAACGATAATTTTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* *
45943727 AA-CTGAGGGTAAACCAGTAATTCTGTA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
* * * **
45943754 AATCAAGGGTAAAATGGTAATTTTACA
1 AATCGAGGGTAAAACGGTAATTCTGTA
*
45943781 AATCGAGGGTAAAACGGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTGTA
** *
45943808 AATCGAGGGTAAAATAGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* *
45943835 AA-CTAAGGGTAGAACGGTAATTCTGTA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
** *
45943862 AATCGAGGGTAAAATAGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* *
45943889 AATTGAGGGTAAAACGGTAATTTTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* * **
45943916 AATCAAGGGTAAAACGGTAATTTTACA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* *
45943943 AATCAAGGGTAAAACGGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTGTA
*
45943970 AATCGAGGGTAAAACAGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
*
45943997 AA-CTAAGGGTAAAACGGTAATTCTGTA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
** *
45944024 AATCGAGGGTAAAATAGTAATTTTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* *
45944051 AA-CTGAGGGTAAAACGATAATTTTGTA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
* **
45944078 AATCGAGGGTAAAACGGTAATTTTACA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* * *
45944105 AATTTGAGGGTAAAACGATAATTCTATA
1 AA-TCGAGGGTAAAACGGTAATTCTGTA
*
45944133 AATCGAGGGTAAAACAGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
*
45944160 AATTGAGGGTAAAACGGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
*
45944187 AATCGAGGGTAAAACGGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTGTA
*
45944214 AA-CTGAGGGTAAAATGGTAATTCTGTA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
45944241 AATCG
1 AATCG
45944246 GGAGTACTTT
Statistics
Matches: 464, Mismatches: 71, Indels: 22
0.83 0.13 0.04
Matches are distributed among these distances:
26 5 0.01
27 431 0.93
28 28 0.06
ACGTcount: A:0.41, C:0.09, G:0.22, T:0.28
Consensus pattern (27 bp):
AATCGAGGGTAAAACGGTAATTCTGTA
Found at i:45945240 original size:53 final size:53
Alignment explanation
Indices: 45945137--45945274 Score: 188
Period size: 53 Copynumber: 2.6 Consensus size: 53
45945127 GTTACAAAGG
* *
45945137 CCATGTCAAGACATGGCATTGATAAGTTACTATAAGGCAAAGGTCCCATGTAAGA
1 CCATGTCAAGACATGGCATTGGTAAGTT-C-ATAAGGCAAAGGTACCATGTAAGA
* * *
45945192 CCATGCCAAGGCATGGCATTGGTGAGTTCATAAGGC-AAGGATACCATGTAAGA
1 CCATGTCAAGACATGGCATTGGTAAGTTCATAAGGCAAAGG-TACCATGTAAGA
*
45945245 CCATGTCAAGACATGGCAATGGTAAGTTCA
1 CCATGTCAAGACATGGCATTGGTAAGTTCA
45945275 AAAAGGAAAA
Statistics
Matches: 73, Mismatches: 9, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
52 4 0.05
53 44 0.60
54 1 0.01
55 24 0.33
ACGTcount: A:0.34, C:0.19, G:0.25, T:0.22
Consensus pattern (53 bp):
CCATGTCAAGACATGGCATTGGTAAGTTCATAAGGCAAAGGTACCATGTAAGA
Found at i:45948581 original size:27 final size:27
Alignment explanation
Indices: 45948551--45948854 Score: 455
Period size: 27 Copynumber: 11.3 Consensus size: 27
45948541 AAAATTACTA
* *
45948551 AAATACCCTTGTAGGGTAGAAATACCG
1 AAATACCCCTGTAGGGTAGAATTACCG
*
45948578 AAATACCCCTGTAGGATAGAATTACCG
1 AAATACCCCTGTAGGGTAGAATTACCG
45948605 AAATACCCCTGTAGGGTAGAATTACCG
1 AAATACCCCTGTAGGGTAGAATTACCG
* **
45948632 CAATACCCCTGTAGGGTAGAATTATTG
1 AAATACCCCTGTAGGGTAGAATTACCG
* *
45948659 CAATACCCCTGTAGGGTAGAATTATCG
1 AAATACCCCTGTAGGGTAGAATTACCG
*
45948686 AAATACCCCTGTAGGGTAGAATTACAG
1 AAATACCCCTGTAGGGTAGAATTACCG
*
45948713 AAATACCCCTGTAGGGTAGAATTACCA
1 AAATACCCCTGTAGGGTAGAATTACCG
*
45948740 AAATACCCCTGTAGGGTAGAATTATCG
1 AAATACCCCTGTAGGGTAGAATTACCG
*
45948767 TAATACCCCTGTAGGGTAGAATTACCG
1 AAATACCCCTGTAGGGTAGAATTACCG
* **
45948794 AAATGCCCCTGTAGGGTAGAATTACTA
1 AAATACCCCTGTAGGGTAGAATTACCG
*
45948821 AAATACCCCTGTAGGGTGGAATTACCG
1 AAATACCCCTGTAGGGTAGAATTACCG
*
45948848 AGATACC
1 AAATACC
45948855 TTGTGGAGTA
Statistics
Matches: 251, Mismatches: 26, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 251 1.00
ACGTcount: A:0.34, C:0.21, G:0.22, T:0.24
Consensus pattern (27 bp):
AAATACCCCTGTAGGGTAGAATTACCG
Found at i:45949351 original size:22 final size:22
Alignment explanation
Indices: 45949299--45949363 Score: 69
Period size: 22 Copynumber: 3.0 Consensus size: 22
45949289 TTAAAGCCTT
* *
45949299 CTGATTATGGCTTTGTGTCAAC
1 CTGATTATGGCTCTGTGCCAAC
*
45949321 CT-ACATATGGCTCTGTGCCAAC
1 CTGA-TTATGGCTCTGTGCCAAC
* *
45949343 CTGATTATGGCTGTCTGCCAA
1 CTGATTATGGCTCTGTGCCAA
45949364 ACGTATTTGC
Statistics
Matches: 35, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
21 1 0.03
22 33 0.94
23 1 0.03
ACGTcount: A:0.20, C:0.25, G:0.22, T:0.34
Consensus pattern (22 bp):
CTGATTATGGCTCTGTGCCAAC
Found at i:45949560 original size:27 final size:26
Alignment explanation
Indices: 45949521--45949604 Score: 78
Period size: 27 Copynumber: 3.1 Consensus size: 26
45949511 ATTCTGTTAA
* * *
45949521 GTGGCTTTTCCACATTATCTATTTCTG
1 GTGGCTATGCCACAATATCT-TTTCTG
*
45949548 GTGGCTATGCCACAAATATCTGTTCTG
1 GTGGCTATGCCAC-AATATCTTTTCTG
* * *
45949575 GTAGCTCTGCCACAATATCTGTATCTG
1 GTGGCTATGCCACAATATCT-TTTCTG
45949602 GTG
1 GTG
45949605 ACTCTTCACA
Statistics
Matches: 46, Mismatches: 9, Indels: 4
0.78 0.15 0.07
Matches are distributed among these distances:
26 7 0.15
27 33 0.72
28 6 0.13
ACGTcount: A:0.19, C:0.23, G:0.20, T:0.38
Consensus pattern (26 bp):
GTGGCTATGCCACAATATCTTTTCTG
Found at i:45949614 original size:26 final size:26
Alignment explanation
Indices: 45949543--45949623 Score: 94
Period size: 27 Copynumber: 3.1 Consensus size: 26
45949533 CATTATCTAT
* *
45949543 TTCTGGTGGCTATGCCACAAATATCTG
1 TTCTGGTAGCTCTGCCAC-AATATCTG
45949570 TTCTGGTAGCTCTGCCACAATATCTG
1 TTCTGGTAGCTCTGCCACAATATCTG
*
45949596 TATCTGGT-GACTCT-TCACAATATCTG
1 T-TCTGGTAG-CTCTGCCACAATATCTG
45949622 TT
1 TT
45949624 GACCGATCGA
Statistics
Matches: 49, Mismatches: 3, Indels: 6
0.84 0.05 0.10
Matches are distributed among these distances:
25 1 0.02
26 22 0.45
27 26 0.53
ACGTcount: A:0.21, C:0.23, G:0.19, T:0.37
Consensus pattern (26 bp):
TTCTGGTAGCTCTGCCACAATATCTG
Found at i:45949743 original size:22 final size:22
Alignment explanation
Indices: 45949711--45949769 Score: 64
Period size: 22 Copynumber: 2.7 Consensus size: 22
45949701 CCCGTTATTA
*
45949711 ATGGCTCTGTGCCAACCTAAAT
1 ATGGCTTTGTGCCAACCTAAAT
* * * *
45949733 ATGGCTTTGTGCCATCTTTACT
1 ATGGCTTTGTGCCAACCTAAAT
*
45949755 ATGGCTTCGTGCCAA
1 ATGGCTTTGTGCCAA
45949770 ACGTATTTAC
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.20, C:0.25, G:0.20, T:0.34
Consensus pattern (22 bp):
ATGGCTTTGTGCCAACCTAAAT
Found at i:45949964 original size:27 final size:26
Alignment explanation
Indices: 45949934--45950008 Score: 87
Period size: 27 Copynumber: 2.8 Consensus size: 26
45949924 TAGGTGGGTT
* *
45949934 TGCCACATTATCTGATTCTGGTGGCTC
1 TGCCACAATATCTG-TTCTGGTGACTC
*
45949961 TGCCACAATATCTGTATCCGGTGACTC
1 TGCCACAATATCTGT-TCTGGTGACTC
* *
45949988 TGTCATAATATCTGTTCTGGT
1 TGCCACAATATCTGTTCTGGT
45950009 AGCCATGCTG
Statistics
Matches: 41, Mismatches: 6, Indels: 3
0.82 0.12 0.06
Matches are distributed among these distances:
26 6 0.15
27 35 0.85
ACGTcount: A:0.19, C:0.24, G:0.20, T:0.37
Consensus pattern (26 bp):
TGCCACAATATCTGTTCTGGTGACTC
Found at i:45950134 original size:6 final size:6
Alignment explanation
Indices: 45950125--45950208 Score: 109
Period size: 6 Copynumber: 13.8 Consensus size: 6
45950115 TTGCATTCAC
* *
45950125 ATTCTG ATTCTG ATTCTG -TCACGTA ATTCTG ATTCTG ATTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG AT-TC-TG ATTCTG ATTCTG ATTCTG ATTCTG
45950174 ATTCTG ATTCTG -TTACTG ATTCTG ATTCTG ATTCT
1 ATTCTG ATTCTG ATT-CTG ATTCTG ATTCTG ATTCT
45950209 CATTTTGGTT
Statistics
Matches: 69, Mismatches: 4, Indels: 10
0.83 0.05 0.12
Matches are distributed among these distances:
5 3 0.04
6 61 0.88
7 4 0.06
8 1 0.01
ACGTcount: A:0.18, C:0.18, G:0.15, T:0.49
Consensus pattern (6 bp):
ATTCTG
Found at i:45952312 original size:81 final size:81
Alignment explanation
Indices: 45952177--45952407 Score: 338
Period size: 81 Copynumber: 2.9 Consensus size: 81
45952167 TAGTTTACCA
* ** * *
45952177 AATTACCAAAATACCCCTGGT-TTGTAAAATTACTAAAATACCCTTGTAGGGTAGAATTATCGAA
1 AATTACCGAAATACCCCT-GTAGGGTAGAATTACTAAAATACCCCTGTAGGGTAGAATTATCGAA
45952241 ATACCCCTGTAAGGTAG
65 ATACCCCTGTAAGGTAG
* *
45952258 AATTACCGAAATACCCCTGTAGGGTAGAATTACCAAAATACCCCTGTAGGGTAGAATTATCGCAA
1 AATTACCGAAATACCCCTGTAGGGTAGAATTACTAAAATACCCCTGTAGGGTAGAATTATCGAAA
*
45952323 TACCCCTGTAGGGTAG
66 TACCCCTGTAAGGTAG
* * * *
45952339 AATTACCGAAATACCCCTATAGGGTAGAATTACTAAAATACCCCTGTAGGGTGGAATTACCGAGA
1 AATTACCGAAATACCCCTGTAGGGTAGAATTACTAAAATACCCCTGTAGGGTAGAATTATCGAAA
45952404 TACC
66 TACC
45952408 TTGTGGAGTA
Statistics
Matches: 135, Mismatches: 14, Indels: 2
0.89 0.09 0.01
Matches are distributed among these distances:
80 2 0.01
81 133 0.99
ACGTcount: A:0.35, C:0.21, G:0.19, T:0.25
Consensus pattern (81 bp):
AATTACCGAAATACCCCTGTAGGGTAGAATTACTAAAATACCCCTGTAGGGTAGAATTATCGAAA
TACCCCTGTAAGGTAG
Found at i:45952406 original size:27 final size:27
Alignment explanation
Indices: 45952177--45952407 Score: 293
Period size: 27 Copynumber: 8.6 Consensus size: 27
45952167 TAGTTTACCA
* ** *
45952177 AATTACCAAAATACCCCTGGT-TTGTAA
1 AATTACCGAAATACCCCT-GTAGGGTAG
** *
45952204 AATTACTAAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
45952231 AATTATCGAAATACCCCTGTAAGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
45952258 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
45952285 AATTACCAAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
45952312 AATTATCGCAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
45952339 AATTACCGAAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
** *
45952366 AATTACTAAAATACCCCTGTAGGGTGG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
45952393 AATTACCGAGATACC
1 AATTACCGAAATACC
45952408 TTGTGGAGTA
Statistics
Matches: 177, Mismatches: 26, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
26 2 0.01
27 175 0.99
ACGTcount: A:0.35, C:0.21, G:0.19, T:0.25
Consensus pattern (27 bp):
AATTACCGAAATACCCCTGTAGGGTAG
Found at i:45953105 original size:27 final size:27
Alignment explanation
Indices: 45953075--45953178 Score: 129
Period size: 27 Copynumber: 3.9 Consensus size: 27
45953065 ATTCTGTTAA
* *
45953075 GTGGCTTTGCCACATTATCTGTTTCTG
1 GTGGCTCTGCCACAATATCTGTTTCTG
*
45953102 GTGGCTATGCCACAAATATCTG-TTCTG
1 GTGGCTCTGCCAC-AATATCTGTTTCTG
* *
45953129 GTAGCTCTGCCACAATATCTGTATCTG
1 GTGGCTCTGCCACAATATCTGTTTCTG
* *
45953156 GTGACTCTGTCACAATATCTGTT
1 GTGGCTCTGCCACAATATCTGTT
45953179 GACCGATCGA
Statistics
Matches: 66, Mismatches: 9, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
26 8 0.12
27 51 0.77
28 7 0.11
ACGTcount: A:0.19, C:0.23, G:0.20, T:0.38
Consensus pattern (27 bp):
GTGGCTCTGCCACAATATCTGTTTCTG
Found at i:45953298 original size:22 final size:22
Alignment explanation
Indices: 45953266--45953324 Score: 64
Period size: 22 Copynumber: 2.7 Consensus size: 22
45953256 CCCGTTATTA
*
45953266 ATGGCTCTGTGCCAACCTAAAT
1 ATGGCTTTGTGCCAACCTAAAT
* * * *
45953288 ATGGCTTTGTGCCATCTTTACT
1 ATGGCTTTGTGCCAACCTAAAT
*
45953310 ATGGCTTCGTGCCAA
1 ATGGCTTTGTGCCAA
45953325 ACGTATTTAC
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.20, C:0.25, G:0.20, T:0.34
Consensus pattern (22 bp):
ATGGCTTTGTGCCAACCTAAAT
Found at i:45953511 original size:27 final size:27
Alignment explanation
Indices: 45953497--45953562 Score: 73
Period size: 27 Copynumber: 2.5 Consensus size: 27
45953487 TTTGCCACAT
45953497 TATCTG-ATTCTGGTGGCTCTGCCAAAA
1 TATCTGTA-TCTGGTGGCTCTGCCAAAA
* * **
45953524 TATCTGTATCTGGTGACTCTGTCACGA
1 TATCTGTATCTGGTGGCTCTGCCAAAA
45953551 TATCTGT-TCTGG
1 TATCTGTATCTGG
45953563 CAGCCATGCT
Statistics
Matches: 34, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
26 5 0.15
27 28 0.82
28 1 0.03
ACGTcount: A:0.18, C:0.21, G:0.23, T:0.38
Consensus pattern (27 bp):
TATCTGTATCTGGTGGCTCTGCCAAAA
Found at i:45953689 original size:6 final size:6
Alignment explanation
Indices: 45953680--45953751 Score: 67
Period size: 6 Copynumber: 11.8 Consensus size: 6
45953670 TTGCATTCAC
* * * *
45953680 ATTCTG ATTCTG ATTCTG -TCACGTA ATTCTT ATTCTG ATTCTA ATTCTG
1 ATTCTG ATTCTG ATTCTG AT-TC-TG ATTCTG ATTCTG ATTCTG ATTCTG
45953729 -TTACTG ATTCTG ATTCTG ATTCT
1 ATT-CTG ATTCTG ATTCTG ATTCT
45953752 CATTTTGGTT
Statistics
Matches: 54, Mismatches: 7, Indels: 10
0.76 0.10 0.14
Matches are distributed among these distances:
5 3 0.06
6 46 0.85
7 4 0.07
8 1 0.02
ACGTcount: A:0.19, C:0.18, G:0.12, T:0.50
Consensus pattern (6 bp):
ATTCTG
Found at i:45961585 original size:15 final size:16
Alignment explanation
Indices: 45961558--45961587 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
45961548 AATAACAATT
45961558 AATATATATTATATAA
1 AATATATATTATATAA
45961574 AATATA-ATTATATA
1 AATATATATTATATA
45961588 TTAGTTGTTA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 8 0.57
16 6 0.43
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (16 bp):
AATATATATTATATAA
Found at i:45963370 original size:47 final size:47
Alignment explanation
Indices: 45963312--45963852 Score: 902
Period size: 47 Copynumber: 11.5 Consensus size: 47
45963302 ATTCAGCCAA
45963312 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
1 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
* *
45963359 GAAAGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGT
1 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
*
45963406 GAAAGTGTATATGTGTGATAAGGCCTAATGGCCGATGTGATGAATGT
1 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
* *
45963453 GAAAGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGT
1 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
* *
45963500 GAAAGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGT
1 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
45963547 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
1 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
45963594 GAAAGTGTATATGTATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
1 GAAAGTGTATA--TATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
*
45963643 GAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGT
1 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
*
45963690 GAAAGTGTATATATGTAATAAGGCCTAATGGCCGATGTGATGAATGT
1 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
45963737 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
1 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
* * * * * * *
45963784 GAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGT
1 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
* *
45963831 GAAAGTGCATAAATGTGATAAG
1 GAAAGTGTATATATGTGATAAG
45963853 TCCCGAAGGG
Statistics
Matches: 471, Mismatches: 21, Indels: 4
0.95 0.04 0.01
Matches are distributed among these distances:
47 424 0.90
49 47 0.10
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (47 bp):
GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
Found at i:45964026 original size:37 final size:37
Alignment explanation
Indices: 45963970--45964048 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
45963960 CCGAGCTCTA
* *
45963970 AAGACCCGATGACTACGTGTGG-GAATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAG-ATTATGTCCGGGT
*
45964007 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
45964044 AAGAC
1 AAGAC
45964049 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 37 0.97
38 1 0.03
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:45965935 original size:41 final size:43
Alignment explanation
Indices: 45965890--45965989 Score: 179
Period size: 42 Copynumber: 2.4 Consensus size: 43
45965880 TTGGTTTTCA
45965890 GCACTAAGTGTGCGGGC-ATAAGTGTTCACGGTT-TGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
45965931 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
45965974 GCA-TAAGTGTGCGGGC
1 GCACTAAGTGTGCGGGC
45965990 TTGAAATGCA
Statistics
Matches: 57, Mismatches: 0, Indels: 3
0.95 0.00 0.05
Matches are distributed among these distances:
41 17 0.30
42 29 0.51
43 11 0.19
ACGTcount: A:0.22, C:0.15, G:0.36, T:0.27
Consensus pattern (43 bp):
GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
Found at i:45966013 original size:29 final size:29
Alignment explanation
Indices: 45965972--45966043 Score: 94
Period size: 29 Copynumber: 2.5 Consensus size: 29
45965962 GTTGTGAGAT
* *
45965972 TGGCA-TAAGTGTGCGGGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA
*
45966000 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
45966029 TGGCACTAAGTGTGC
1 TGGCACTAAGTGTGC
45966044 CGTGGTTGAT
Statistics
Matches: 39, Mismatches: 3, Indels: 3
0.87 0.07 0.07
Matches are distributed among these distances:
28 10 0.26
29 29 0.74
ACGTcount: A:0.26, C:0.15, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:45966330 original size:31 final size:28
Alignment explanation
Indices: 45966292--45966367 Score: 89
Period size: 31 Copynumber: 2.6 Consensus size: 28
45966282 ATAATCACCA
* *
45966292 CGCACACTTAGTGCCATGTACTTTTTAAAC
1 CGCACACTTAGTGCCATG--CATTTCAAAC
* *
45966322 TCGCACACTTAGTGGCATGCATTTCAAGC
1 -CGCACACTTAGTGCCATGCATTTCAAAC
45966351 CGCACACTTAGTGCCAT
1 CGCACACTTAGTGCCAT
45966368 TCACAACCGT
Statistics
Matches: 40, Mismatches: 5, Indels: 3
0.83 0.10 0.06
Matches are distributed among these distances:
28 16 0.40
29 7 0.17
31 17 0.43
ACGTcount: A:0.25, C:0.29, G:0.17, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCCATGCATTTCAAAC
Found at i:45967946 original size:17 final size:18
Alignment explanation
Indices: 45967924--45967959 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
45967914 ACTCGATTTG
45967924 GGTAA-TTTGGATAGGTT
1 GGTAATTTTGGATAGGTT
45967941 GGTAATTTTGGATAGGTT
1 GGTAATTTTGGATAGGTT
45967959 G
1 G
45967960 ACTAAATCTG
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
17 5 0.28
18 13 0.72
ACGTcount: A:0.22, C:0.00, G:0.36, T:0.42
Consensus pattern (18 bp):
GGTAATTTTGGATAGGTT
Found at i:45969841 original size:27 final size:27
Alignment explanation
Indices: 45969799--45969944 Score: 184
Period size: 27 Copynumber: 5.4 Consensus size: 27
45969789 TGGATAAGTT
* *
45969799 GTAGAATTATCTAAATACCCTTGTAGG
1 GTAGAATTACCGAAATACCCTTGTAGG
* *
45969826 GTAGAATTACCGAAATACCCCTGTAGA
1 GTAGAATTACCGAAATACCCTTGTAGG
* *
45969853 ATAGAATTATCGAAATACCCTTGTAGG
1 GTAGAATTACCGAAATACCCTTGTAGG
* * *
45969880 GTAGAAATACCGAAATACCCCTATAGG
1 GTAGAATTACCGAAATACCCTTGTAGG
* *
45969907 GTAGAATTACCGAGATACCCTTGTGGG
1 GTAGAATTACCGAAATACCCTTGTAGG
*
45969934 GTAAAATTACC
1 GTAGAATTACC
45969945 ATTTTTCCCC
Statistics
Matches: 100, Mismatches: 19, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 100 1.00
ACGTcount: A:0.36, C:0.18, G:0.20, T:0.26
Consensus pattern (27 bp):
GTAGAATTACCGAAATACCCTTGTAGG
Found at i:45969875 original size:54 final size:54
Alignment explanation
Indices: 45969800--45969944 Score: 209
Period size: 54 Copynumber: 2.7 Consensus size: 54
45969790 GGATAAGTTG
* *
45969800 TAGAATTATCTAAATACCCTTGTAGGGTAGAATTACCGAAATACCCCTGTAGAA
1 TAGAATTATCGAAATACCCTTGTAGGGTAGAATTACCGAAATACCCCTATAGAA
* **
45969854 TAGAATTATCGAAATACCCTTGTAGGGTAGAAATACCGAAATACCCCTATAGGG
1 TAGAATTATCGAAATACCCTTGTAGGGTAGAATTACCGAAATACCCCTATAGAA
* * * *
45969908 TAGAATTACCGAGATACCCTTGTGGGGTAAAATTACC
1 TAGAATTATCGAAATACCCTTGTAGGGTAGAATTACC
45969945 ATTTTTCCCC
Statistics
Matches: 81, Mismatches: 10, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
54 81 1.00
ACGTcount: A:0.36, C:0.19, G:0.19, T:0.26
Consensus pattern (54 bp):
TAGAATTATCGAAATACCCTTGTAGGGTAGAATTACCGAAATACCCCTATAGAA
Found at i:45973159 original size:20 final size:20
Alignment explanation
Indices: 45973100--45973238 Score: 100
Period size: 20 Copynumber: 7.0 Consensus size: 20
45973090 TTGTTCGAGA
*
45973100 TTTGCACTTCAGTGCCCCTA
1 TTTGCACTTCAGTGCCCCTG
*
45973120 TTTGTACTTCAGTGCCCCTG
1 TTTGCACTTCAGTGCCCCTG
* *
45973140 TTTGTACTTCAGTGTCCCTG
1 TTTGCACTTCAGTGCCCCTG
* * * * *
45973160 TATACACTTCAGTGTCTCTA
1 TTTGCACTTCAGTGCCCCTG
** * * *
45973180 TTCACACTACGGTTCCCCTG
1 TTTGCACTTCAGTGCCCCTG
*
45973200 TTTGCACATTTA-TGCCCCTG
1 TTTGCAC-TTCAGTGCCCCTG
* * *
45973220 TCTACACTTCGGTGCCCCT
1 TTTGCACTTCAGTGCCCCT
45973239 ATTATGCATC
Statistics
Matches: 91, Mismatches: 26, Indels: 4
0.75 0.21 0.03
Matches are distributed among these distances:
19 2 0.02
20 88 0.97
21 1 0.01
ACGTcount: A:0.14, C:0.32, G:0.16, T:0.37
Consensus pattern (20 bp):
TTTGCACTTCAGTGCCCCTG
Found at i:45975397 original size:32 final size:31
Alignment explanation
Indices: 45975358--45975418 Score: 79
Period size: 32 Copynumber: 1.9 Consensus size: 31
45975348 AACCTTGTTT
*
45975358 CATTTCTA-CATTTCAAAATCAACCATTTAGCA
1 CATTTCTAGC-TTACAAAAT-AACCATTTAGCA
*
45975390 CATTTCTAGCTTACCAAATAACCATTTAG
1 CATTTCTAGCTTACAAAATAACCATTTAG
45975419 TTTTCATAAC
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
31 10 0.38
32 15 0.58
33 1 0.04
ACGTcount: A:0.36, C:0.25, G:0.05, T:0.34
Consensus pattern (31 bp):
CATTTCTAGCTTACAAAATAACCATTTAGCA
Found at i:45978079 original size:45 final size:45
Alignment explanation
Indices: 45978029--45978466 Score: 180
Period size: 47 Copynumber: 9.0 Consensus size: 45
45978019 ATTGACGGTT
45978029 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGGTAAGGC
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGGTAAGGC
* * * ** * * **
45978074 AAGGATCCCGTGTAAGACCATGTCAAAACATGGCATCAGCATTGATT
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGGTA-AG-GC
** * ** * *
45978121 AAGGACT-CCATGTAAGACCACATGAAGATGTGGCCTTGGCACTAAGAC
1 AAGGA-TACCATGTAAGACCATGTCAAGACATGGCATTGG---TAAGGC
* *** *
45978169 AAGGATACTATGTAAGACCATGTTTGGAACATGGCATTTGGTAAGAC
1 AAGGATACCATGTAAGACCATGTCAAG-ACATGGCA-TTGGTAAGGC
* *** **
45978216 AAAGATACCATGTAA-ACCATGTTGGGAACATGGCATTTGGTAAGAT
1 AAGGATACCATGTAAGACCATGTCAAG-ACATGGCA-TTGGTAAGGC
* * *
45978262 AAGGATATCATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGC
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTG----G-----TAAGGC
* * * *
45978316 AAGGAAATCATGTAACACCATGTCAAGACATGGCATTGATGAGTTATTATAAGGAA
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCA-T--TG-G------TAAGG-C
* * *
45978372 AAGG-TCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGATTTCATAAGGC
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCATT-G-G------TAAGGC
45978424 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGGTAAG
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGGTAAG
45978467 TTCAAAAAGG
Statistics
Matches: 301, Mismatches: 66, Indels: 52
0.72 0.16 0.12
Matches are distributed among these distances:
45 42 0.14
46 50 0.17
47 54 0.18
48 20 0.07
49 7 0.02
50 5 0.02
51 1 0.00
52 6 0.02
53 39 0.13
54 38 0.13
55 33 0.11
56 4 0.01
57 2 0.01
ACGTcount: A:0.35, C:0.17, G:0.24, T:0.23
Consensus pattern (45 bp):
AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGGTAAGGC
Found at i:45978250 original size:46 final size:47
Alignment explanation
Indices: 45978163--45978283 Score: 190
Period size: 46 Copynumber: 2.6 Consensus size: 47
45978153 GCCTTGGCAC
* *
45978163 TAAGACAAGGATACTATGTAAGACCATGTTTGGAACATGGCATTTGG
1 TAAGACAAGGATACCATGTAAGACCATGTTGGGAACATGGCATTTGG
*
45978210 TAAGACAAAGATACCATGTAA-ACCATGTTGGGAACATGGCATTTGG
1 TAAGACAAGGATACCATGTAAGACCATGTTGGGAACATGGCATTTGG
* *
45978256 TAAGATAAGGATATCATGTAAGACCATG
1 TAAGACAAGGATACCATGTAAGACCATG
45978284 CCAAGGCATG
Statistics
Matches: 67, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
46 42 0.63
47 25 0.37
ACGTcount: A:0.37, C:0.13, G:0.24, T:0.26
Consensus pattern (47 bp):
TAAGACAAGGATACCATGTAAGACCATGTTGGGAACATGGCATTTGG
Found at i:45978294 original size:46 final size:45
Alignment explanation
Indices: 45978163--45978298 Score: 121
Period size: 46 Copynumber: 2.9 Consensus size: 45
45978153 GCCTTGGCAC
* * ***
45978163 TAAGACAAGGATACTATGTAAGACCATGTTTGGAACATGGCATTTGG
1 TAAGACAAAGATACCATGTAA-ACCATGCAAGG-ACATGGCATTTGG
***
45978210 TAAGACAAAGATACCATGTAAACCATGTTGGGAACATGGCATTTGG
1 TAAGACAAAGATACCATGTAAACCATGCAAGG-ACATGGCATTTGG
* * *
45978256 TAAGATAAGGATATCATGTAAGACCATGCCAAGG-CATGGCATT
1 TAAGACAAAGATACCATGTAA-ACCATG-CAAGGACATGGCATT
45978299 GATAAGTTCT
Statistics
Matches: 78, Mismatches: 9, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
46 51 0.65
47 25 0.32
48 2 0.03
ACGTcount: A:0.36, C:0.15, G:0.24, T:0.25
Consensus pattern (45 bp):
TAAGACAAAGATACCATGTAAACCATGCAAGGACATGGCATTTGG
Found at i:45978326 original size:54 final size:54
Alignment explanation
Indices: 45978262--45978469 Score: 240
Period size: 53 Copynumber: 3.9 Consensus size: 54
45978252 TTGGTAAGAT
* *
45978262 AAGGATATCATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATAAGTTCTATAAGGC
* * * * * * *
45978316 AAGGAAATCATGTAACACCATGTCAAGACATGGCATTGATGAGTTATTATAAGGAA
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATAAGTT-CTATAAGG-C
* * * * *
45978372 AAGG-TCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGATTTC-ATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATAAGTTCTATAAGGC
* *
45978424 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGGTAAGTTC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATAAGTTC
45978470 AAAAAGGAAA
Statistics
Matches: 129, Mismatches: 22, Indels: 7
0.82 0.14 0.04
Matches are distributed among these distances:
52 4 0.03
53 42 0.33
54 40 0.31
55 39 0.30
56 4 0.03
ACGTcount: A:0.35, C:0.17, G:0.24, T:0.24
Consensus pattern (54 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATAAGTTCTATAAGGC
Found at i:45978391 original size:55 final size:54
Alignment explanation
Indices: 45978262--45978461 Score: 242
Period size: 54 Copynumber: 3.7 Consensus size: 54
45978252 TTGGTAAGAT
* * * *
45978262 AAGGATATCATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTTTTATAAGGC
* * * * *
45978316 AAGGAAATCATGTAACACCATGTCAAGACATGGCATTGATGAGTTATTATAAGGAA
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTT-TTATAAGG-C
* * * *
45978372 AAGG-TCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGA-TTTCATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTTTTATAAGGC
*
45978424 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTG
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTG
45978462 GTAAGTTCAA
Statistics
Matches: 124, Mismatches: 19, Indels: 7
0.83 0.13 0.05
Matches are distributed among these distances:
52 4 0.03
53 37 0.30
54 42 0.34
55 37 0.30
56 4 0.03
ACGTcount: A:0.35, C:0.17, G:0.24, T:0.23
Consensus pattern (54 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTTTTATAAGGC
Found at i:45984344 original size:44 final size:44
Alignment explanation
Indices: 45984279--45984362 Score: 107
Period size: 44 Copynumber: 1.9 Consensus size: 44
45984269 TTGATAGCTC
* * *
45984279 AAAGTCCATGGTTGTACCATGGTAATTAAGGAAGAATTGATGGA
1 AAAGTCCATGGTTATAACATGGCAATTAAGGAAGAATTGATGGA
* *
45984323 AAAGTCCAT-GTTCATAACATGGCATTTAAGGATGAATTGA
1 AAAGTCCATGGTT-ATAACATGGCAATTAAGGAAGAATTGA
45984363 CGGTTAAGGA
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
43 3 0.09
44 31 0.91
ACGTcount: A:0.37, C:0.11, G:0.24, T:0.29
Consensus pattern (44 bp):
AAAGTCCATGGTTATAACATGGCAATTAAGGAAGAATTGATGGA
Found at i:45985879 original size:46 final size:46
Alignment explanation
Indices: 45985829--45985957 Score: 197
Period size: 46 Copynumber: 2.8 Consensus size: 46
45985819 TGGTTGAGCA
* *
45985829 TCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
*
45985875 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* *
45985921 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGA-TTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATGG
45985958 GCGGGTTACA
Statistics
Matches: 77, Mismatches: 5, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
46 76 0.99
47 1 0.01
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:45987373 original size:53 final size:53
Alignment explanation
Indices: 45987262--45987399 Score: 179
Period size: 53 Copynumber: 2.6 Consensus size: 53
45987252 GTTACAAAGG
* * *
45987262 CCATGTCAAGACATGGCATTGATGAGTTACTATAAGGCAAAGGTCCCATGTAAGA
1 CCATGTCAAGACATGGCATTGGTGAGTT-C-ATAAGGCAAAGGTACCACGTAAGA
* *
45987317 CCATGCCAAGGCATGGCATTGGTGAGTTCATAAGGC-AAGGATACCACGTAAGA
1 CCATGTCAAGACATGGCATTGGTGAGTTCATAAGGCAAAGG-TACCACGTAAGA
* *
45987370 CCATGTCAAGACATGGCAATGGTAAGTTCA
1 CCATGTCAAGACATGGCATTGGTGAGTTCA
45987400 AAAAGGAAAA
Statistics
Matches: 73, Mismatches: 9, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
52 4 0.05
53 43 0.59
54 1 0.01
55 25 0.34
ACGTcount: A:0.33, C:0.20, G:0.25, T:0.22
Consensus pattern (53 bp):
CCATGTCAAGACATGGCATTGGTGAGTTCATAAGGCAAAGGTACCACGTAAGA
Found at i:45988622 original size:46 final size:45
Alignment explanation
Indices: 45988549--45988690 Score: 146
Period size: 46 Copynumber: 3.2 Consensus size: 45
45988539 TAACCATGGA
* * *
45988549 CTTATTAATTTTCCATCGTATTGCCATAGTGTCTTTCAACTAT-GAT
1 CTTATTCATTTTTCATCGTGTT-CCATAGTGTCTTTCAACTATAG-T
* * **
45988595 CTTATTCATTTTTCGTCGTGTTACCATAGTGTCTTTTATTTATAGT
1 CTTATTCATTTTTCATCGTGTT-CCATAGTGTCTTTCAACTATAGT
* **
45988641 CTTATTCATTTTTCTTCGTGTT--GGAGTGTCTTTCAACTATAGT
1 CTTATTCATTTTTCATCGTGTTCCATAGTGTCTTTCAACTATAGT
45988684 CTTATTC
1 CTTATTC
45988691 GTTTGATTCA
Statistics
Matches: 81, Mismatches: 14, Indels: 5
0.81 0.14 0.05
Matches are distributed among these distances:
43 23 0.28
46 57 0.70
47 1 0.01
ACGTcount: A:0.19, C:0.18, G:0.13, T:0.51
Consensus pattern (45 bp):
CTTATTCATTTTTCATCGTGTTCCATAGTGTCTTTCAACTATAGT
Found at i:45988752 original size:45 final size:45
Alignment explanation
Indices: 45988701--45988826 Score: 144
Period size: 45 Copynumber: 2.8 Consensus size: 45
45988691 GTTTGATTCA
* ** * * *
45988701 TGATGCCATAGCATCTTTTAGCTATGTTCTTGCTCGATAAAACCG
1 TGATGCCATAACATCTTCCAGCTATGGTATTACTCGATAAAACCG
* * *
45988746 TGATGCCATAACATCTTCCAGCTATGGTATTACTTGATAGAATCG
1 TGATGCCATAACATCTTCCAGCTATGGTATTACTCGATAAAACCG
* * *
45988791 TGATGCCATAACGTCTTGCAGCTATGGTCTTACTCG
1 TGATGCCATAACATCTTCCAGCTATGGTATTACTCG
45988827 TTTCTGGTAT
Statistics
Matches: 68, Mismatches: 13, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
45 68 1.00
ACGTcount: A:0.25, C:0.22, G:0.19, T:0.34
Consensus pattern (45 bp):
TGATGCCATAACATCTTCCAGCTATGGTATTACTCGATAAAACCG
Found at i:45989923 original size:26 final size:26
Alignment explanation
Indices: 45989887--45989937 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
45989877 ACACCAATAT
45989887 CAGTATCGCAGCAAAGCTGCCAGTAG
1 CAGTATCGCAGCAAAGCTGCCAGTAG
*
45989913 CAGTATTGCAGCAAAGCTGCCAGTA
1 CAGTATCGCAGCAAAGCTGCCAGTA
45989938 ATCAGTATAA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.31, C:0.25, G:0.25, T:0.18
Consensus pattern (26 bp):
CAGTATCGCAGCAAAGCTGCCAGTAG
Found at i:45998343 original size:34 final size:34
Alignment explanation
Indices: 45998300--45998374 Score: 132
Period size: 34 Copynumber: 2.2 Consensus size: 34
45998290 AGTGATAGTC
* *
45998300 CAGTATCAGTGTGGGCCTTAGCCCATTACAGTAG
1 CAGTATCAGTATGGGCCTTAGCCCATTACAGTAA
45998334 CAGTATCAGTATGGGCCTTAGCCCATTACAGTAA
1 CAGTATCAGTATGGGCCTTAGCCCATTACAGTAA
45998368 CAGTATC
1 CAGTATC
45998375 TGAAATGCAA
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
34 39 1.00
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.27
Consensus pattern (34 bp):
CAGTATCAGTATGGGCCTTAGCCCATTACAGTAA
Found at i:46002302 original size:27 final size:27
Alignment explanation
Indices: 46002270--46002467 Score: 236
Period size: 27 Copynumber: 7.3 Consensus size: 27
46002260 ACTGAAAATG
** *
46002270 CCCTCGATTTGTAGAATTACCATTTTA
1 CCCTCGATTTACAGAATTACCGTTTTA
* *
46002297 CCCTCGATTTATAGAATTACCGTTTCA
1 CCCTCGATTTACAGAATTACCGTTTTA
* *
46002324 CCCTCGATTTACAAAATTACTGTTTTA
1 CCCTCGATTTACAGAATTACCGTTTTA
** * *
46002351 CTTTCGATTTATAGAATTACCATTTTA
1 CCCTCGATTTACAGAATTACCGTTTTA
*
46002378 CCCTCGATTTACAGAATTATCGTTTTA
1 CCCTCGATTTACAGAATTACCGTTTTA
* *
46002405 CCCTCGATTTACAAAATTACCATTTTA
1 CCCTCGATTTACAGAATTACCGTTTTA
* *
46002432 CCATC-AGTTTACAAAATTACCGTTTTA
1 CCCTCGA-TTTACAGAATTACCGTTTTA
46002459 CCCTCGATT
1 CCCTCGATT
46002468 GTGAAATTAC
Statistics
Matches: 145, Mismatches: 24, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
26 1 0.01
27 143 0.99
28 1 0.01
ACGTcount: A:0.28, C:0.23, G:0.09, T:0.40
Consensus pattern (27 bp):
CCCTCGATTTACAGAATTACCGTTTTA
Found at i:46002368 original size:81 final size:81
Alignment explanation
Indices: 46002273--46002467 Score: 275
Period size: 81 Copynumber: 2.4 Consensus size: 81
46002263 GAAAATGCCC
* *
46002273 TCGATTTGTAGAATTACCATTTTACCCTCGATTTATAGAATTACCGTTTCACCCTCGATTTACAA
1 TCGATTTATAGAATTACCATTTTACCCTCGATTTACAGAATTACCGTTTCACCCTCGATTTACAA
** **
46002338 AATTACTGTTTTACTT
66 AATTACCATTTTACCA
* *
46002354 TCGATTTATAGAATTACCATTTTACCCTCGATTTACAGAATTATCGTTTTACCCTCGATTTACAA
1 TCGATTTATAGAATTACCATTTTACCCTCGATTTACAGAATTACCGTTTCACCCTCGATTTACAA
46002419 AATTACCATTTTACCA
66 AATTACCATTTTACCA
* * *
46002435 TC-AGTTTACAAAATTACCGTTTTACCCTCGATT
1 TCGA-TTTATAGAATTACCATTTTACCCTCGATT
46002468 GTGAAATTAC
Statistics
Matches: 102, Mismatches: 11, Indels: 2
0.89 0.10 0.02
Matches are distributed among these distances:
80 1 0.01
81 101 0.99
ACGTcount: A:0.29, C:0.22, G:0.09, T:0.41
Consensus pattern (81 bp):
TCGATTTATAGAATTACCATTTTACCCTCGATTTACAGAATTACCGTTTCACCCTCGATTTACAA
AATTACCATTTTACCA
Found at i:46002529 original size:27 final size:27
Alignment explanation
Indices: 46002499--46002649 Score: 162
Period size: 27 Copynumber: 5.6 Consensus size: 27
46002489 TGTAGGATAG
*
46002499 AATTACCACAATACCCCTAGTTTATAA
1 AATTACCAAAATACCCCTAGTTTATAA
* * *
46002526 AATTACCAAAACACCTCTAGTTTGTAA
1 AATTACCAAAATACCCCTAGTTTATAA
* * *
46002553 AATTACCAAAATACCACTGGTTTATGA
1 AATTACCAAAATACCCCTAGTTTATAA
* * *
46002580 AATTACCGAAATA-CCCTCATTTTGTAA
1 AATTACCAAAATACCCCT-AGTTTATAA
* *
46002607 AATTACCAAAATACCCCTAATTTACAA
1 AATTACCAAAATACCCCTAGTTTATAA
46002634 AATTA-CAGAAATACCC
1 AATTACCA-AAATACCC
46002650 TTGATTTGTA
Statistics
Matches: 102, Mismatches: 19, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
26 5 0.05
27 93 0.91
28 4 0.04
ACGTcount: A:0.42, C:0.23, G:0.06, T:0.28
Consensus pattern (27 bp):
AATTACCAAAATACCCCTAGTTTATAA
Found at i:46002557 original size:54 final size:54
Alignment explanation
Indices: 46002499--46002650 Score: 200
Period size: 54 Copynumber: 2.8 Consensus size: 54
46002489 TGTAGGATAG
*
46002499 AATTACCACAATACCCCTAGTTTATAAAATTACC-AAA-ACACCTCTAGTTTGTAA
1 AATTACCAAAATACCCCTAGTTTATAAAATTACCGAAATAC-CCTC-AGTTTGTAA
* * * *
46002553 AATTACCAAAATACCACTGGTTTATGAAATTACCGAAATACCCTCATTTTGTAA
1 AATTACCAAAATACCCCTAGTTTATAAAATTACCGAAATACCCTCAGTTTGTAA
* * *
46002607 AATTACCAAAATACCCCTAATTTACAAAATTACAGAAATACCCT
1 AATTACCAAAATACCCCTAGTTTATAAAATTACCGAAATACCCT
46002651 TGATTTGTAG
Statistics
Matches: 85, Mismatches: 11, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
54 76 0.89
55 7 0.08
56 2 0.02
ACGTcount: A:0.42, C:0.23, G:0.06, T:0.29
Consensus pattern (54 bp):
AATTACCAAAATACCCCTAGTTTATAAAATTACCGAAATACCCTCAGTTTGTAA
Found at i:46002586 original size:81 final size:81
Alignment explanation
Indices: 46002499--46002648 Score: 189
Period size: 81 Copynumber: 1.9 Consensus size: 81
46002489 TGTAGGATAG
* * **
46002499 AATTACC-ACAATACCC-CTAGTTTATAAAATTACCAAAACACCTCTAGTTTGTAAAATTACCA-
1 AATTACCGA-AATACCCTC-AGTTTATAAAATTACCAAAACACCCCTAATTTACAAAATTA-CAG
46002561 AAATACCACTGGTTTATGA
63 AAATACCACTGGTTTATGA
* * *
46002580 AATTACCGAAATACCCTCATTTTGTAAAATTACCAAAATACCCCTAATTTACAAAATTACAGAAA
1 AATTACCGAAATACCCTCAGTTTATAAAATTACCAAAACACCCCTAATTTACAAAATTACAGAAA
46002645 TACC
66 TACC
46002649 CTTGATTTGT
Statistics
Matches: 59, Mismatches: 7, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
80 2 0.03
81 55 0.93
82 2 0.03
ACGTcount: A:0.43, C:0.23, G:0.06, T:0.29
Consensus pattern (81 bp):
AATTACCGAAATACCCTCAGTTTATAAAATTACCAAAACACCCCTAATTTACAAAATTACAGAAA
TACCACTGGTTTATGA
Found at i:46002658 original size:54 final size:54
Alignment explanation
Indices: 46002499--46002671 Score: 190
Period size: 54 Copynumber: 3.2 Consensus size: 54
46002489 TGTAGGATAG
* * *
46002499 AATTACCACAATACCCCTAGTTTATAAAATTACCA-AAACACCTCTAG-TTTGTAA
1 AATTACCAAAATACCCCTAGTTTATAAAATTA-CAGAAATACC-CTTGATTTGTAA
* * * * *
46002553 AATTACCAAAATACCACTGGTTTATGAAATTACCGAAATACCC-TCATTTTGTAA
1 AATTACCAAAATACCCCTAGTTTATAAAATTACAGAAATACCCTTGA-TTTGTAA
* * *
46002607 AATTACCAAAATACCCCTAATTTACAAAATTACAGAAATACCCTTGATTTGTAG
1 AATTACCAAAATACCCCTAGTTTATAAAATTACAGAAATACCCTTGATTTGTAA
*
46002661 ATTTACCAAAA
1 AATTACCAAAA
46002672 CACCTTTGTA
Statistics
Matches: 98, Mismatches: 17, Indels: 8
0.80 0.14 0.07
Matches are distributed among these distances:
53 2 0.02
54 94 0.96
55 2 0.02
ACGTcount: A:0.42, C:0.21, G:0.07, T:0.30
Consensus pattern (54 bp):
AATTACCAAAATACCCCTAGTTTATAAAATTACAGAAATACCCTTGATTTGTAA
Found at i:46002758 original size:26 final size:27
Alignment explanation
Indices: 46002710--46002773 Score: 69
Period size: 27 Copynumber: 2.4 Consensus size: 27
46002700 ACCCCTAACA
*
46002710 GGTAAAAAGACCGTAAAGCCCC-TATAG
1 GGTAAAATGACCGTAAA-CCCCTTATAG
* *
46002737 GGTAAAATGACCGTAATA-CCCTTGTAT
1 GGTAAAATGACCGTAA-ACCCCTTATAG
46002764 GGTAAAATGA
1 GGTAAAATGA
46002774 TGAATACGCC
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
26 3 0.09
27 28 0.88
28 1 0.03
ACGTcount: A:0.39, C:0.17, G:0.22, T:0.22
Consensus pattern (27 bp):
GGTAAAATGACCGTAAACCCCTTATAG
Done.