Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A06
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 115140250
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2234201 characters in sequence are not A, C, G, or T
File 136 of 345
Found at i:46003406 original size:25 final size:25
Alignment explanation
Indices: 46003378--46003426 Score: 71
Period size: 25 Copynumber: 2.0 Consensus size: 25
46003368 TTACAATATG
* * *
46003378 AAAATGACTATTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
46003403 AAAATGACCATTATACCCCTAGGT
1 AAAATGACCATTATACCCCTAGGT
46003427 TTTAATTATA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.35, C:0.22, G:0.14, T:0.29
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:46003486 original size:20 final size:20
Alignment explanation
Indices: 46003461--46003527 Score: 100
Period size: 20 Copynumber: 3.4 Consensus size: 20
46003451 GATATGATAT
*
46003461 ACATGAT-TGATATGATATGC
1 ACATGATATG-TATGAAATGC
*
46003481 ACATGATATGTATAAAATGC
1 ACATGATATGTATGAAATGC
46003501 ACATGATATGTATGAAATGC
1 ACATGATATGTATGAAATGC
46003521 ACATGAT
1 ACATGAT
46003528 GTATTCATAA
Statistics
Matches: 43, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
20 41 0.95
21 2 0.05
ACGTcount: A:0.40, C:0.10, G:0.18, T:0.31
Consensus pattern (20 bp):
ACATGATATGTATGAAATGC
Found at i:46003650 original size:25 final size:26
Alignment explanation
Indices: 46003577--46003686 Score: 138
Period size: 26 Copynumber: 4.3 Consensus size: 26
46003567 GAGGAAGTGC
46003577 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
46003603 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
* ***
46003629 AAAAGGGCTT-TTCCCCAGTTTACCA
1 AAAAGGGCTTATGCCCCAGTTTATTG
*
46003654 AAAAGGGCTT-TGCCCTAG-TTATT-
1 AAAAGGGCTTATGCCCCAGTTTATTG
46003677 AAAAGAGGCT
1 AAAAG-GGCT
46003687 AGGCCTCCAG
Statistics
Matches: 75, Mismatches: 8, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
23 5 0.07
24 7 0.09
25 27 0.36
26 36 0.48
ACGTcount: A:0.29, C:0.20, G:0.22, T:0.29
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTATTG
Found at i:46003878 original size:42 final size:42
Alignment explanation
Indices: 46003819--46003912 Score: 143
Period size: 42 Copynumber: 2.2 Consensus size: 42
46003809 TAGTCTCCCC
* ** *
46003819 AAATGGGCTTGCATACATTCATTGGTATTTCATATGATATTG
1 AAATGGGCTTGCATACATCCATTGACATTACATATGATATTG
*
46003861 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
1 AAATGGGCTTGCATACATCCATTGACATTACATATGATATTG
46003903 AAATGGGCTT
1 AAATGGGCTT
46003913 ATGGGCCATA
Statistics
Matches: 47, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
42 47 1.00
ACGTcount: A:0.30, C:0.14, G:0.20, T:0.36
Consensus pattern (42 bp):
AAATGGGCTTGCATACATCCATTGACATTACATATGATATTG
Found at i:46004041 original size:31 final size:31
Alignment explanation
Indices: 46003934--46004043 Score: 166
Period size: 31 Copynumber: 3.5 Consensus size: 31
46003924 CGTTTACAGT
* *
46003934 AAAGGCTTCGGCCCAGTGAAATGATTTATGA
1 AAAGGCTTCAGCCCAGTGATATGATTTATGA
* **
46003965 AAATGCTTCAGCATAGTGATATGATTTATGA
1 AAAGGCTTCAGCCCAGTGATATGATTTATGA
46003996 AAAGGCTTCAGCCCAGTGATATGATTTATGA
1 AAAGGCTTCAGCCCAGTGATATGATTTATGA
*
46004027 AAAGGCTTCGGCCCAGT
1 AAAGGCTTCAGCCCAGT
46004044 AACCGTTAAA
Statistics
Matches: 70, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
31 70 1.00
ACGTcount: A:0.32, C:0.16, G:0.24, T:0.28
Consensus pattern (31 bp):
AAAGGCTTCAGCCCAGTGATATGATTTATGA
Found at i:46005502 original size:56 final size:55
Alignment explanation
Indices: 46005463--46005679 Score: 248
Period size: 56 Copynumber: 3.9 Consensus size: 55
46005453 CCTCATACAG
46005463 GGTATTACTCAGACACATATATCAGAATCACATATCGATGCCAACATATTAAACGT
1 GGTATTACTCAGACACATATATCAGAATCACATATCGATGCCAACATA-TAAACGT
*
46005519 GGTCTTACTC-GTACACATATATCA-AAGTCACATATCGATGCCAACATATGAAACGT
1 GGTATTACTCAG-ACACATATATCAGAA-TCACATATCGATGCCAACATAT-AAACGT
* * *
46005575 GG-ACTTACTCACACACATATATCGGAATCACATATCGATGCCAACGTATCAAACGT
1 GGTA-TTACTCAGACACATATATCAGAATCACATATCGATGCCAACATAT-AAACGT
* * * *
46005631 CG-ACTTACT-TGCACACTTATATCAGAGTCACATATCGATGCC-ACATATA
1 GGTA-TTACTCAG-ACACATATATCAGAATCACATATCGATGCCAACATATA
46005680 CATCCAGGTA
Statistics
Matches: 141, Mismatches: 13, Indels: 16
0.83 0.08 0.09
Matches are distributed among these distances:
54 1 0.01
55 9 0.06
56 129 0.91
57 2 0.01
ACGTcount: A:0.36, C:0.24, G:0.13, T:0.26
Consensus pattern (55 bp):
GGTATTACTCAGACACATATATCAGAATCACATATCGATGCCAACATATAAACGT
Found at i:46005638 original size:112 final size:111
Alignment explanation
Indices: 46005467--46005678 Score: 325
Period size: 112 Copynumber: 1.9 Consensus size: 111
46005457 ATACAGGGTA
* * * * *
46005467 TTACTCAGACACATATATCAGAATCACATATCGATGCCAACATATTAAACGTGGTCTTACTCGTA
1 TTACTCACACACATATATCAGAATCACATATCGATGCCAACATATCAAACGTCGACTTACTCGCA
46005532 CACATATATCAAAGTCACATATCGATGCCAACATATGAAACGTGGAC
66 CACATATATCAAAGTCACATATCGATGCC-ACATATGAAACGTGGAC
* * *
46005579 TTACTCACACACATATATCGGAATCACATATCGATGCCAACGTATCAAACGTCGACTTACTTGCA
1 TTACTCACACACATATATCAGAATCACATATCGATGCCAACATATCAAACGTCGACTTACTCGCA
* *
46005644 CACTTATATCAGAGTCACATATCGATGCCACATAT
66 CACATATATCAAAGTCACATATCGATGCCACATAT
46005679 ACATCCAGGT
Statistics
Matches: 90, Mismatches: 10, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
111 6 0.07
112 84 0.93
ACGTcount: A:0.36, C:0.25, G:0.13, T:0.26
Consensus pattern (111 bp):
TTACTCACACACATATATCAGAATCACATATCGATGCCAACATATCAAACGTCGACTTACTCGCA
CACATATATCAAAGTCACATATCGATGCCACATATGAAACGTGGAC
Found at i:46011688 original size:56 final size:56
Alignment explanation
Indices: 46011628--46011834 Score: 272
Period size: 56 Copynumber: 3.7 Consensus size: 56
46011618 ATACAGGGTA
* * * * * *
46011628 TTACTCGTACACAAATATCGGAATCACATATCGATGCTAATGTATTAAACGTGGTC
1 TTACTCGCACACATATATCAGAATCACATATCGATGCCAACGTATTAAACGTGGAC
* * * *
46011684 TTACTCGCACACATATATCAGATTCACATATCGATGCCAACATATGAAACGTAGAC
1 TTACTCGCACACATATATCAGAATCACATATCGATGCCAACGTATTAAACGTGGAC
*
46011740 TTACTCGCACACATATATCGGAATCACATATCGATGCCAACGTATTAAACGTGGAC
1 TTACTCGCACACATATATCAGAATCACATATCGATGCCAACGTATTAAACGTGGAC
* * *
46011796 TTACTTGCACAC-TCATATAAGAGTCACATATCGATGCCA
1 TTACTCGCACACAT-ATATCAGAATCACATATCGATGCCA
46011835 CATATACATC
Statistics
Matches: 131, Mismatches: 19, Indels: 2
0.86 0.12 0.01
Matches are distributed among these distances:
55 1 0.01
56 130 0.99
ACGTcount: A:0.35, C:0.24, G:0.14, T:0.27
Consensus pattern (56 bp):
TTACTCGCACACATATATCAGAATCACATATCGATGCCAACGTATTAAACGTGGAC
Found at i:46011792 original size:112 final size:111
Alignment explanation
Indices: 46011628--46011839 Score: 327
Period size: 112 Copynumber: 1.9 Consensus size: 111
46011618 ATACAGGGTA
* * * *
46011628 TTACTCGTACACAAATATCGGAATCACATATCGATGCTAATGTATTAAACGTGGTCTTACTCGCA
1 TTACTCGCACACAAATATCGGAATCACATATCGATGCCAACGTATTAAACGTGGACTTACTCGCA
* *
46011693 CACAT-ATATCAGATTCACATATCGATGCCAACATATGAAACGTAGAC
66 CAC-TCATATAAGAGTCACATATCGATGCC-ACATATGAAACGTAGAC
* *
46011740 TTACTCGCACACATATATCGGAATCACATATCGATGCCAACGTATTAAACGTGGACTTACTTGCA
1 TTACTCGCACACAAATATCGGAATCACATATCGATGCCAACGTATTAAACGTGGACTTACTCGCA
46011805 CACTCATATAAGAGTCACATATCGATGCCACATAT
66 CACTCATATAAGAGTCACATATCGATGCCACATAT
46011840 ACATCCAGGT
Statistics
Matches: 91, Mismatches: 8, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
111 7 0.08
112 84 0.92
ACGTcount: A:0.35, C:0.24, G:0.14, T:0.27
Consensus pattern (111 bp):
TTACTCGCACACAAATATCGGAATCACATATCGATGCCAACGTATTAAACGTGGACTTACTCGCA
CACTCATATAAGAGTCACATATCGATGCCACATATGAAACGTAGAC
Found at i:46015832 original size:8 final size:8
Alignment explanation
Indices: 46015814--46015843 Score: 51
Period size: 8 Copynumber: 3.6 Consensus size: 8
46015804 ATGCAAATTA
46015814 TGTGTATTT
1 TGTG-ATTT
46015823 TGTGATTT
1 TGTGATTT
46015831 TGTGATTT
1 TGTGATTT
46015839 TGTGA
1 TGTGA
46015844 AATAGGGACT
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
8 17 0.81
9 4 0.19
ACGTcount: A:0.13, C:0.00, G:0.27, T:0.60
Consensus pattern (8 bp):
TGTGATTT
Found at i:46016201 original size:29 final size:29
Alignment explanation
Indices: 46016150--46016212 Score: 110
Period size: 29 Copynumber: 2.2 Consensus size: 29
46016140 ATGAATCGGA
46016150 AGCTTTGGCACTAAGTGTGCGATTTAAACT
1 AGCTTTGGCACTAAGTGTGCGATTT-AACT
46016180 AGCTTTGGCAC-AAGTGTGCGATTTAACT
1 AGCTTTGGCACTAAGTGTGCGATTTAACT
46016208 AGCTT
1 AGCTT
46016213 CAACTACTTA
Statistics
Matches: 33, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
28 9 0.27
29 13 0.39
30 11 0.33
ACGTcount: A:0.25, C:0.17, G:0.24, T:0.33
Consensus pattern (29 bp):
AGCTTTGGCACTAAGTGTGCGATTTAACT
Found at i:46022918 original size:39 final size:40
Alignment explanation
Indices: 46022834--46022918 Score: 109
Period size: 40 Copynumber: 2.1 Consensus size: 40
46022824 ACTTAATTCA
* * *
46022834 CCAGCATTAAGCCTGCGGGACTTTAAACCCGGATACAATC
1 CCAGCATGAAGCCAGCGGGACTCTAAACCCGGATACAATC
* *
46022874 CCAGCATGAAGCCAGCGGGTCTCT-AACCCGGATGCAATC
1 CCAGCATGAAGCCAGCGGGACTCTAAACCCGGATACAATC
*
46022913 TCAGCA
1 CCAGCA
46022919 CAATTCATTT
Statistics
Matches: 39, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
39 19 0.49
40 20 0.51
ACGTcount: A:0.28, C:0.32, G:0.22, T:0.18
Consensus pattern (40 bp):
CCAGCATGAAGCCAGCGGGACTCTAAACCCGGATACAATC
Found at i:46023041 original size:44 final size:45
Alignment explanation
Indices: 46022988--46023095 Score: 148
Period size: 47 Copynumber: 2.4 Consensus size: 45
46022978 TGCACACTTT
*
46022988 TCACAATTGGTCATTCGGCCTTATCACATAT-CACTTACACATAT-A
1 TCAC-ATTGGCCATTCGGCCTTATCACATATACACTTACACAT-TCA
*
46023033 TCACATTGGCCATTCGGCCTTATCACATATACACACTTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATAT--ACACTTACACATTCA
46023080 TCACATTGGCCATTCG
1 TCACATTGGCCATTCG
46023096 ATCTTAAGCT
Statistics
Matches: 57, Mismatches: 2, Indels: 6
0.88 0.03 0.09
Matches are distributed among these distances:
44 25 0.44
45 4 0.07
46 1 0.02
47 27 0.47
ACGTcount: A:0.28, C:0.30, G:0.10, T:0.32
Consensus pattern (45 bp):
TCACATTGGCCATTCGGCCTTATCACATATACACTTACACATTCA
Found at i:46025222 original size:34 final size:34
Alignment explanation
Indices: 46025179--46025246 Score: 127
Period size: 34 Copynumber: 2.0 Consensus size: 34
46025169 ATGAAACAAC
*
46025179 AACCATCACCCTTATTAATTACCATAGCCGAAAG
1 AACCATCACCCCTATTAATTACCATAGCCGAAAG
46025213 AACCATCACCCCTATTAATTACCATAGCCGAAAG
1 AACCATCACCCCTATTAATTACCATAGCCGAAAG
46025247 CCCTACTCAT
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 33 1.00
ACGTcount: A:0.38, C:0.31, G:0.09, T:0.22
Consensus pattern (34 bp):
AACCATCACCCCTATTAATTACCATAGCCGAAAG
Found at i:46025721 original size:22 final size:20
Alignment explanation
Indices: 46025681--46025721 Score: 55
Period size: 20 Copynumber: 1.9 Consensus size: 20
46025671 AGTCCTATTA
*
46025681 ACTAAATTCACATGCAATTG
1 ACTAAATTCACATGAAATTG
46025701 ACTAAATTCAAACATGAAATT
1 ACTAAATTC--ACATGAAATT
46025722 TTCACACATG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 9 0.50
22 9 0.50
ACGTcount: A:0.46, C:0.17, G:0.07, T:0.29
Consensus pattern (20 bp):
ACTAAATTCACATGAAATTG
Found at i:46038622 original size:28 final size:30
Alignment explanation
Indices: 46038556--46038622 Score: 111
Period size: 28 Copynumber: 2.3 Consensus size: 30
46038546 ATGAATCAGA
*
46038556 AGCTTTGGCACTAAGTGTGCGATTTAAACT
1 AGCTTCGGCACTAAGTGTGCGATTTAAACT
46038586 AGCTTCGGCAC-AAGTGTGCGATTT-AACT
1 AGCTTCGGCACTAAGTGTGCGATTTAAACT
46038614 AGCTTCGGC
1 AGCTTCGGC
46038623 TACTTGAGGC
Statistics
Matches: 36, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
28 13 0.36
29 13 0.36
30 10 0.28
ACGTcount: A:0.24, C:0.21, G:0.25, T:0.30
Consensus pattern (30 bp):
AGCTTCGGCACTAAGTGTGCGATTTAAACT
Found at i:46052198 original size:28 final size:28
Alignment explanation
Indices: 46052126--46052254 Score: 140
Period size: 27 Copynumber: 4.7 Consensus size: 28
46052116 CGACCATATA
46052126 AATGGCACTTAGTGTGCGATA-CATCCAG
1 AATGGCACTTAGTGTGCGA-AGCATCCAG
* *
46052154 AATGGCA-TTAGTGTGCGAAGTATCGATG
1 AATGGCACTTAGTGTGCGAAGCATCCA-G
*
46052182 -ATGGCACTTAGTGTGCGAAACATCCAG
1 AATGGCACTTAGTGTGCGAAGCATCCAG
* * **
46052209 AATGG-ACTTAGTGTGCGAGGTATCGGG
1 AATGGCACTTAGTGTGCGAAGCATCCAG
*
46052236 AATGGCACCTAGTGTGCGA
1 AATGGCACTTAGTGTGCGA
46052255 GACATTGAAT
Statistics
Matches: 85, Mismatches: 11, Indels: 10
0.80 0.10 0.09
Matches are distributed among these distances:
26 1 0.01
27 44 0.52
28 40 0.47
ACGTcount: A:0.27, C:0.17, G:0.31, T:0.25
Consensus pattern (28 bp):
AATGGCACTTAGTGTGCGAAGCATCCAG
Found at i:46052211 original size:55 final size:55
Alignment explanation
Indices: 46052126--46052259 Score: 191
Period size: 55 Copynumber: 2.4 Consensus size: 55
46052116 CGACCATATA
* *
46052126 AATGGCACTTAGTGTGCGATACATCCAGAATGG-CATTAGTGTGCGAAGTATCGATG
1 AATGGCACTTAGTGTGCGAAACATCCAGAATGGAC-TTAGTGTGCGAAGTATCG-GG
*
46052182 -ATGGCACTTAGTGTGCGAAACATCCAGAATGGACTTAGTGTGCGAGGTATCGGG
1 AATGGCACTTAGTGTGCGAAACATCCAGAATGGACTTAGTGTGCGAAGTATCGGG
* *
46052236 AATGGCACCTAGTGTGCGAGACAT
1 AATGGCACTTAGTGTGCGAAACAT
46052260 TGAATATTCA
Statistics
Matches: 71, Mismatches: 5, Indels: 5
0.88 0.06 0.06
Matches are distributed among these distances:
54 1 0.01
55 69 0.97
56 1 0.01
ACGTcount: A:0.28, C:0.17, G:0.31, T:0.25
Consensus pattern (55 bp):
AATGGCACTTAGTGTGCGAAACATCCAGAATGGACTTAGTGTGCGAAGTATCGGG
Found at i:46052344 original size:32 final size:31
Alignment explanation
Indices: 46052305--46052432 Score: 166
Period size: 32 Copynumber: 4.0 Consensus size: 31
46052295 TATGAGATTG
* *
46052305 GTACAAGATAGTATAGGTATGTATGAAAATTC
1 GTACAAGATGGTACAGGTATGTA-GAAAATTC
*
46052337 GCACAAGATGGTACAGGTATGTACGAAAATTC
1 GTACAAGATGGTACAGGTATGTA-GAAAATTC
* *
46052369 GTACAAGATGGTATAGGTATGTACAGAAATTC
1 GTACAAGATGGTACAGGTATGTAGA-AAATTC
*
46052401 GTACAAGATGGTACAGGTATGTACAGAAATTC
1 GTACAAGATGGTACAGGTATGTAGA-AAATTC
46052433 AATTGAGTAT
Statistics
Matches: 87, Mismatches: 8, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
31 1 0.01
32 86 0.99
ACGTcount: A:0.38, C:0.11, G:0.24, T:0.27
Consensus pattern (31 bp):
GTACAAGATGGTACAGGTATGTAGAAAATTC
Found at i:46052383 original size:64 final size:65
Alignment explanation
Indices: 46052305--46052429 Score: 200
Period size: 64 Copynumber: 1.9 Consensus size: 65
46052295 TATGAGATTG
*
46052305 GTACAAGATAGTATAGGTATGTA-TGAAAATTCGCACAAGATGGTACAGGTATGTAC-GAAAATT
1 GTACAAGATAGTATAGGTATGTACAG-AAATTCGCACAAGATGGTACAGGTATGTACAGAAAATT
46052368 C
65 C
* *
46052369 GTACAAGATGGTATAGGTATGTACAGAAATTCGTACAAGATGGTACAGGTATGTACAGAAA
1 GTACAAGATAGTATAGGTATGTACAGAAATTCGCACAAGATGGTACAGGTATGTACAGAAA
46052430 TTCAATTGAG
Statistics
Matches: 56, Mismatches: 3, Indels: 3
0.90 0.05 0.05
Matches are distributed among these distances:
64 51 0.91
65 5 0.09
ACGTcount: A:0.39, C:0.10, G:0.25, T:0.26
Consensus pattern (65 bp):
GTACAAGATAGTATAGGTATGTACAGAAATTCGCACAAGATGGTACAGGTATGTACAGAAAATTC
Found at i:46066693 original size:42 final size:42
Alignment explanation
Indices: 46066629--46066741 Score: 122
Period size: 43 Copynumber: 2.6 Consensus size: 42
46066619 CTCGATTTGA
* *
46066629 GATTTACATGTAAGACCATGTCTGGGATATAGGCA-TCATATCT
1 GATTT-CATGTAAGACCATGTCTGGGACAGAGGCATTCATAT-T
*
46066672 GATTTCATGTAAGACTC-TGTCTGGGACAGAGGCATTGATATT
1 GATTTCATGTAAGAC-CATGTCTGGGACAGAGGCATTCATATT
* * *
46066714 GAATTACATGTAAGACCACGTCTAGGAC
1 G-ATTTCATGTAAGACCATGTCTGGGAC
46066742 GTCGGCATTG
Statistics
Matches: 60, Mismatches: 6, Indels: 8
0.81 0.08 0.11
Matches are distributed among these distances:
42 28 0.47
43 32 0.53
ACGTcount: A:0.30, C:0.17, G:0.23, T:0.30
Consensus pattern (42 bp):
GATTTCATGTAAGACCATGTCTGGGACAGAGGCATTCATATT
Found at i:46068996 original size:6 final size:6
Alignment explanation
Indices: 46068980--46069018 Score: 60
Period size: 6 Copynumber: 6.5 Consensus size: 6
46068970 TTACCATCTC
* *
46068980 TTTCTT CTTCTT TTTCTT TTTCTT TTTCTT TTTATT TTT
1 TTTCTT TTTCTT TTTCTT TTTCTT TTTCTT TTTCTT TTT
46069019 GCCAAAATAT
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
6 30 1.00
ACGTcount: A:0.03, C:0.15, G:0.00, T:0.82
Consensus pattern (6 bp):
TTTCTT
Found at i:46074370 original size:32 final size:32
Alignment explanation
Indices: 46074329--46074398 Score: 104
Period size: 32 Copynumber: 2.2 Consensus size: 32
46074319 CACAGCTTAC
* *
46074329 AGCCATCAGTAGCAGTAATTTGATTGGCACAA
1 AGCCATCAGTAGCAGTAATATGATCGGCACAA
* *
46074361 AGCCATCAGTAGCTGTAATATGATCGGCACAC
1 AGCCATCAGTAGCAGTAATATGATCGGCACAA
46074393 AGCCAT
1 AGCCAT
46074399 GGGTAAATAT
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
32 34 1.00
ACGTcount: A:0.33, C:0.23, G:0.21, T:0.23
Consensus pattern (32 bp):
AGCCATCAGTAGCAGTAATATGATCGGCACAA
Found at i:46074846 original size:27 final size:26
Alignment explanation
Indices: 46074817--46075132 Score: 303
Period size: 27 Copynumber: 11.8 Consensus size: 26
46074807 ATTTTGCCTT
* *
46074817 ACAGGGGTATTTCGTTAATTTTACACT
1 ACAGGGGTATTTCGGTAATTTTACA-A
* * *
46074844 ACAAGGGTATTTCGATAATTTTACACT
1 ACAGGGGTATTTCGGTAATTTTACA-A
* *
46074871 ACAGGGGTATTTCGATAATTTTACACT
1 ACAGGGGTATTTCGGTAATTTTACA-A
** * *
46074898 ACAACGGTATTTCGATAATTTTACATT
1 ACAGGGGTATTTCGGTAATTTTACA-A
* *
46074925 ACAGGGGTATTTTGGTAATTTTACACC
1 ACAGGGGTATTTCGGTAATTTTACA-A
*
46074952 ACAGGGGTATTTTGGTAATTTTACAA
1 ACAGGGGTATTTCGGTAATTTTACAA
* * * *
46074978 ATTAGGGGTATTTTGATAATTTTATAA
1 A-CAGGGGTATTTCGGTAATTTTACAA
*
46075005 ACTAGGGGTATTTTGGTAATTTTACAA
1 AC-AGGGGTATTTCGGTAATTTTACAA
***
46075032 ACTAGGGGTATTTTAATAATTTTACAA
1 AC-AGGGGTATTTCGGTAATTTTACAA
46075059 ACTA--GGTATTTCGGTAATTTTACAA
1 AC-AGGGGTATTTCGGTAATTTTACAA
*
46075084 ATCGGGGGTATTTCGGTAATTTTACAA
1 A-CAGGGGTATTTCGGTAATTTTACAA
*
46075111 ACTGAGGGTATTTCGGTAATTT
1 ACAG-GGGTATTTCGGTAATTT
46075133 AAAAACTGGG
Statistics
Matches: 257, Mismatches: 26, Indels: 12
0.87 0.09 0.04
Matches are distributed among these distances:
25 19 0.07
26 4 0.02
27 234 0.91
ACGTcount: A:0.30, C:0.11, G:0.19, T:0.40
Consensus pattern (26 bp):
ACAGGGGTATTTCGGTAATTTTACAA
Found at i:46077522 original size:24 final size:24
Alignment explanation
Indices: 46077473--46077523 Score: 84
Period size: 24 Copynumber: 2.1 Consensus size: 24
46077463 TTAAAATCAA
*
46077473 GATAGCTTAATCTATCTATTTCGG
1 GATAGCTTAATCTATCTATCTCGG
*
46077497 GATAGCTTAATCTATCTATCTGGG
1 GATAGCTTAATCTATCTATCTCGG
46077521 GAT
1 GAT
46077524 CAATTTGAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.25, C:0.16, G:0.20, T:0.39
Consensus pattern (24 bp):
GATAGCTTAATCTATCTATCTCGG
Found at i:46079937 original size:34 final size:34
Alignment explanation
Indices: 46079899--46079963 Score: 103
Period size: 34 Copynumber: 1.9 Consensus size: 34
46079889 TATGCCCTTA
46079899 ACAGTAGCAATATCAGTGTGGGCCTTAGCCCGCT
1 ACAGTAGCAATATCAGTGTGGGCCTTAGCCCGCT
* * *
46079933 ACAGTAGCAGTATCAGTTTGGTCCTTAGCCC
1 ACAGTAGCAATATCAGTGTGGGCCTTAGCCC
46079964 AATTTAGTAC
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
34 28 1.00
ACGTcount: A:0.23, C:0.26, G:0.25, T:0.26
Consensus pattern (34 bp):
ACAGTAGCAATATCAGTGTGGGCCTTAGCCCGCT
Found at i:46095861 original size:54 final size:54
Alignment explanation
Indices: 46095493--46095841 Score: 407
Period size: 54 Copynumber: 6.5 Consensus size: 54
46095483 GAGTGTTACA
* * ** * *
46095493 AAGGTCGTGATCGTCAATCAGTGGACCGTGAGAATT-GTAAAATCTTGAAAGTAG
1 AAGGTCATGATCGTAAATCAGCAGACTGTGA-AATTCGTAAAATCTCGAAAGTAG
* *
46095547 AAGGTCATGATTGTAAATTAGCAGACTGTGAAATTCGTAAAATCTCGAAAGTAG
1 AAGGTCATGATCGTAAATCAGCAGACTGTGAAATTCGTAAAATCTCGAAAGTAG
* * * *
46095601 AAGGTCATGATTGGAAATCTGCAGACTGTGAAATTCGTAAAATCTCGAAAGTGG
1 AAGGTCATGATCGTAAATCAGCAGACTGTGAAATTCGTAAAATCTCGAAAGTAG
* * **
46095655 AAGGTCATGATCATAAATCGGCAGACCAT-AAGATTCGTAAAATCTCGAAAGTAG
1 AAGGTCATGATCGTAAATCAGCAGACTGTGAA-ATTCGTAAAATCTCGAAAGTAG
** * * *
46095709 AAGGTGGTGATCGTAAATCAACAGACTGTGAAATTCGTAAAATCTCAAAAGCAG
1 AAGGTCATGATCGTAAATCAGCAGACTGTGAAATTCGTAAAATCTCGAAAGTAG
* * * * *
46095763 AAGGTCGTGATCGTGAATCAGC-GAACCGCGAGATTCGTAAAATCTCGAAAGTAG
1 AAGGTCATGATCGTAAATCAGCAG-ACTGTGAAATTCGTAAAATCTCGAAAGTAG
*
46095817 AAGGTCATGATCGTAAATTAGCAGA
1 AAGGTCATGATCGTAAATCAGCAGA
46095842 TCGCGAGATT
Statistics
Matches: 251, Mismatches: 39, Indels: 10
0.84 0.13 0.03
Matches are distributed among these distances:
53 7 0.03
54 241 0.96
55 3 0.01
ACGTcount: A:0.37, C:0.14, G:0.24, T:0.24
Consensus pattern (54 bp):
AAGGTCATGATCGTAAATCAGCAGACTGTGAAATTCGTAAAATCTCGAAAGTAG
Found at i:46098932 original size:54 final size:54
Alignment explanation
Indices: 46098873--46098980 Score: 216
Period size: 54 Copynumber: 2.0 Consensus size: 54
46098863 TTTAAGGAAG
46098873 ATACATCTAAACCAAATAGCTGAGTTTATTTGAAAATAAATAAATGGAAGCGTT
1 ATACATCTAAACCAAATAGCTGAGTTTATTTGAAAATAAATAAATGGAAGCGTT
46098927 ATACATCTAAACCAAATAGCTGAGTTTATTTGAAAATAAATAAATGGAAGCGTT
1 ATACATCTAAACCAAATAGCTGAGTTTATTTGAAAATAAATAAATGGAAGCGTT
46098981 GGAAGGCAGC
Statistics
Matches: 54, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
54 54 1.00
ACGTcount: A:0.44, C:0.11, G:0.15, T:0.30
Consensus pattern (54 bp):
ATACATCTAAACCAAATAGCTGAGTTTATTTGAAAATAAATAAATGGAAGCGTT
Found at i:46111024 original size:44 final size:43
Alignment explanation
Indices: 46110955--46111047 Score: 159
Period size: 44 Copynumber: 2.1 Consensus size: 43
46110945 ATAGACTACC
46110955 GGATAAAGATGATGTCAATTATTAATAATAGTAAGAAGAAAAG
1 GGATAAAGATGATGTCAATTATTAATAATAGTAAGAAGAAAAG
*
46110998 GGATAAAGATGATAGTCAATTATTAATAATAGTAATAAGAAAAG
1 GGATAAAGATGAT-GTCAATTATTAATAATAGTAAGAAGAAAAG
*
46111042 GTATAA
1 GGATAA
46111048 CCAAAGTTTA
Statistics
Matches: 47, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
43 13 0.28
44 34 0.72
ACGTcount: A:0.52, C:0.02, G:0.19, T:0.27
Consensus pattern (43 bp):
GGATAAAGATGATGTCAATTATTAATAATAGTAAGAAGAAAAG
Found at i:46114268 original size:32 final size:34
Alignment explanation
Indices: 46114232--46114296 Score: 89
Period size: 34 Copynumber: 2.0 Consensus size: 34
46114222 TAACAGCGGT
*
46114232 ACTGGGCCAGAG-CCCTT-TTCAGATTACAATAA
1 ACTGGGCCAGAGCCCCTTATTCAGATAACAATAA
**
46114264 ACTGGGCCTTAGCCCCTTATTCAGATAACAATA
1 ACTGGGCCAGAGCCCCTTATTCAGATAACAATA
46114297 TGGCCCATAG
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
32 10 0.36
33 5 0.18
34 13 0.46
ACGTcount: A:0.31, C:0.26, G:0.17, T:0.26
Consensus pattern (34 bp):
ACTGGGCCAGAGCCCCTTATTCAGATAACAATAA
Found at i:46114318 original size:137 final size:138
Alignment explanation
Indices: 46114082--46114358 Score: 520
Period size: 137 Copynumber: 2.0 Consensus size: 138
46114072 AGCCCATCCA
*
46114082 GGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAAACTGGGCCTTAGCCCCTTAT
1 GGTAACAGCGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAAACTGGGCCTTAGCCCCTTAT
*
46114147 TCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAACATATGCAAG
66 TCAGATAACAATATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAACATATGCAAG
46114212 CCCATTTG
131 CCCATTTG
46114220 GGTAACAGCGGTACTGGGCCAGAGCCCTTTTCAGATTACAAT-AAACTGGGCCTTAGCCCCTTAT
1 GGTAACAGCGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAAACTGGGCCTTAGCCCCTTAT
*
46114284 TCAGATAACAATATGGCCCATAGGCCTATTTCAAAATACATGCAACATCAGTAAACATATGCAAG
66 TCAGATAACAATATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAACATATGCAAG
46114349 CCCATTTG
131 CCCATTTG
46114357 GG
1 GG
46114359 GAGACTACTC
Statistics
Matches: 136, Mismatches: 3, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
137 95 0.70
138 41 0.30
ACGTcount: A:0.32, C:0.25, G:0.19, T:0.25
Consensus pattern (138 bp):
GGTAACAGCGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAAACTGGGCCTTAGCCCCTTAT
TCAGATAACAATATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAACATATGCAAG
CCCATTTG
Found at i:46116174 original size:26 final size:26
Alignment explanation
Indices: 46116145--46116304 Score: 248
Period size: 26 Copynumber: 6.2 Consensus size: 26
46116135 TAAAATTCCC
*
46116145 ATCATGGAACATTTACCTAAATCATT
1 ATCATGGAACATTTACCTAAACCATT
*
46116171 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAAACCATT
* *
46116197 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAAACCATT
*
46116223 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAAACCATT
* *
46116249 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAAACCATT
*
46116275 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAAACCATT
46116301 ATCA
1 ATCA
46116305 ATTTGTACCA
Statistics
Matches: 124, Mismatches: 10, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 124 1.00
ACGTcount: A:0.36, C:0.23, G:0.07, T:0.34
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAAACCATT
Found at i:46116223 original size:52 final size:52
Alignment explanation
Indices: 46116145--46116304 Score: 295
Period size: 52 Copynumber: 3.1 Consensus size: 52
46116135 TAAAATTCCC
*
46116145 ATCATGGAACATTTACCTAAAT-CATTATCATGGAACATTTACCTAACCCATT
1 ATCATGGAATATTTACCT-AATCCATTATCATGGAACATTTACCTAACCCATT
46116197 ATCATGGAATATTTACCTAATCCATTATCATGGAACATTTACCTAACCCATT
1 ATCATGGAATATTTACCTAATCCATTATCATGGAACATTTACCTAACCCATT
46116249 ATCATGGAATATTTACCTAATCCATTATCATGGAACATTTACCTAACCCATT
1 ATCATGGAATATTTACCTAATCCATTATCATGGAACATTTACCTAACCCATT
46116301 ATCA
1 ATCA
46116305 ATTTGTACCA
Statistics
Matches: 106, Mismatches: 1, Indels: 2
0.97 0.01 0.02
Matches are distributed among these distances:
51 3 0.03
52 103 0.97
ACGTcount: A:0.36, C:0.23, G:0.07, T:0.34
Consensus pattern (52 bp):
ATCATGGAATATTTACCTAATCCATTATCATGGAACATTTACCTAACCCATT
Found at i:46120095 original size:48 final size:48
Alignment explanation
Indices: 46120021--46120240 Score: 186
Period size: 48 Copynumber: 4.7 Consensus size: 48
46120011 CATATCGATG
* * *
46120021 CCGATGCCATATCCCAGATATGGTCTTACACTAGCTCTCATATATCTGTA
1 CCGATG-CATGTCCCAGACAT-GTCTTACACTAGCTCTCATATATCCGTA
* * * * *
46120071 CTGGTGCATGTCCCAGACATGTCTTACACTGGCTCTCTTATATCCGTG
1 CCGATGCATGTCCCAGACATGTCTTACACTAGCTCTCATATATCCGTA
* *
46120119 CCGATGCATGTCCCAGACATGTCTTACACTAG----CACATCT-CGTA
1 CCGATGCATGTCCCAGACATGTCTTACACTAGCTCTCATATATCCGTA
* * * * * *
46120162 GCCGATGCAAGTCCCAAACATGTCTTACACTAGCT-T-ACATCTCAAG-G
1 -CCGATGCATGTCCCAGACATGTCTTACACTAGCTCTCATATATC-CGTA
* *
46120209 CCGATGCATGTTCCAGAGATGTCTTACACTAG
1 CCGATGCATGTCCCAGACATGTCTTACACTAG
46120241 TTTTCGTCTT
Statistics
Matches: 141, Mismatches: 23, Indels: 16
0.78 0.13 0.09
Matches are distributed among these distances:
43 3 0.02
44 34 0.24
46 34 0.24
48 54 0.38
49 12 0.09
50 4 0.03
ACGTcount: A:0.25, C:0.29, G:0.18, T:0.29
Consensus pattern (48 bp):
CCGATGCATGTCCCAGACATGTCTTACACTAGCTCTCATATATCCGTA
Found at i:46120231 original size:46 final size:45
Alignment explanation
Indices: 46120075--46120267 Score: 185
Period size: 46 Copynumber: 4.2 Consensus size: 45
46120065 TCTGTACTGG
* * **
46120075 TGCATGTCCCAGACATGTCTTACACTGGCTCT-CTTATATCCGTGCCGA
1 TGCATGTCCCAGACATGTCTTACACTAGCT-TAC--ATCT-CAAGCCGA
*
46120123 TGCATGTCCCAGACATGTCTTACACTAGC--ACATCTCGTAGCCGA
1 TGCATGTCCCAGACATGTCTTACACTAGCTTACATCTC-AAGCCGA
* *
46120167 TGCAAGTCCCAAACATGTCTTACACTAGCTTACATCTCAAGGCCGA
1 TGCATGTCCCAGACATGTCTTACACTAGCTTACATCTCAA-GCCGA
* * * * * *
46120213 TGCATGTTCCAGAGATGTCTTACACTAGTTTTCGTCTTAATGCCGA
1 TGCATGTCCCAGACATGTCTTACACTAGCTTACATCTCAA-GCCGA
46120259 TGCATGTCC
1 TGCATGTCC
46120268 AGCATTTCAT
Statistics
Matches: 123, Mismatches: 17, Indels: 12
0.81 0.11 0.08
Matches are distributed among these distances:
43 1 0.01
44 35 0.28
45 1 0.01
46 58 0.47
48 28 0.23
ACGTcount: A:0.23, C:0.29, G:0.18, T:0.30
Consensus pattern (45 bp):
TGCATGTCCCAGACATGTCTTACACTAGCTTACATCTCAAGCCGA
Found at i:46126263 original size:48 final size:48
Alignment explanation
Indices: 46126211--46126465 Score: 251
Period size: 48 Copynumber: 5.5 Consensus size: 48
46126201 TATCCCAGTT
* * *
46126211 ATGTCTTACACCGGCTCCCATATATCCGTGCTGATGCATGTCCCAGAC
1 ATGTCTTACACTGGCTCACATATATCCGTGCCGATGCATGTCCCAGAC
* *
46126259 ATGTCTTACACTGGCTCTCTTATATCCGTGCCGATGCATGTCCCAGAC
1 ATGTCTTACACTGGCTCACATATATCCGTGCCGATGCATGTCCCAGAC
* * * ** *
46126307 ATATCTTACACTAG--CACAT-CA--CGTAGCTAATGCATGTCCCAAAC
1 ATGTCTTACACTGGCTCACATATATCCGT-GCCGATGCATGTCCCAGAC
* * *
46126351 ATGTCTTACACTGGCTTAC--ATCTCAAG-GCCGATGCATGTCCCAGAC
1 ATGTCTTACACTGGCTCACATATATC-CGTGCCGATGCATGTCCCAGAC
* ** *
46126397 ATGTCTTACACTAGCATTTCATA-ATGCG-GCCGATGCATGTCCCAGAC
1 ATGTCTTACACTGGC-TCACATATATCCGTGCCGATGCATGTCCCAGAC
46126444 ATGTCTTACACTGGCTCACATA
1 ATGTCTTACACTGGCTCACATA
46126466 ACAGCAGTGT
Statistics
Matches: 168, Mismatches: 29, Indels: 22
0.77 0.13 0.10
Matches are distributed among these distances:
43 3 0.02
44 28 0.17
45 1 0.01
46 40 0.24
47 37 0.22
48 58 0.35
49 1 0.01
ACGTcount: A:0.25, C:0.30, G:0.17, T:0.28
Consensus pattern (48 bp):
ATGTCTTACACTGGCTCACATATATCCGTGCCGATGCATGTCCCAGAC
Found at i:46126358 original size:44 final size:44
Alignment explanation
Indices: 46126292--46126455 Score: 168
Period size: 46 Copynumber: 3.6 Consensus size: 44
46126282 ATCCGTGCCG
* * *
46126292 ATGCATGTCCCAGACATATCTTACACTAGCACATCACGTA-GCTA
1 ATGCATGTCCCAGACATGTCTTACACTAGCACATCAC-AAGGCCA
* * * *
46126336 ATGCATGTCCCAAACATGTCTTACACTGGCTTACATCTCAAGGCCG
1 ATGCATGTCCCAGACATGTCTTACACTAGC--ACATCACAAGGCCA
** * *
46126382 ATGCATGTCCCAGACATGTCTTACACTAGCATTTCATAATGCGGCCG
1 ATGCATGTCCCAGACATGTCTTACACTAGCACATCACAA---GGCCA
46126429 ATGCATGTCCCAGACATGTCTTACACT
1 ATGCATGTCCCAGACATGTCTTACACT
46126456 GGCTCACATA
Statistics
Matches: 101, Mismatches: 13, Indels: 9
0.82 0.11 0.07
Matches are distributed among these distances:
44 32 0.32
45 1 0.01
46 36 0.36
47 32 0.32
ACGTcount: A:0.27, C:0.29, G:0.16, T:0.27
Consensus pattern (44 bp):
ATGCATGTCCCAGACATGTCTTACACTAGCACATCACAAGGCCA
Found at i:46126408 original size:90 final size:91
Alignment explanation
Indices: 46126244--46126465 Score: 270
Period size: 93 Copynumber: 2.4 Consensus size: 91
46126234 ATCCGTGCTG
*
46126244 ATGCATGTCCCAGACATGTCTTACACTGGCTCT-CTTATATCCGTGCCGATGCATGTCCCAGACA
1 ATGCATGTCCCAGACATGTCTTACACTGGCT-TAC--ATATCAGTGCCGATGCATGTCCCAGACA
* * *
46126308 TATCTTACACTAGCA-CATCACGTAGCTA
63 TATCTTACACTAGCATCATAACGCAGCCA
* * *
46126336 ATGCATGTCCCAAACATGTCTTACACTGGCTTACATCTCAAG-GCCGATGCATGTCCCAGACATG
1 ATGCATGTCCCAGACATGTCTTACACTGGCTTACATATC-AGTGCCGATGCATGTCCCAGACATA
* * *
46126400 TCTTACACTAGCATTTCATAATGCGGCCG
65 TCTTACACTAGCA--TCATAACGCAGCCA
*
46126429 ATGCATGTCCCAGACATGTCTTACACTGGCTCACATA
1 ATGCATGTCCCAGACATGTCTTACACTGGCTTACATA
46126466 ACAGCAGTGT
Statistics
Matches: 112, Mismatches: 13, Indels: 9
0.84 0.10 0.07
Matches are distributed among these distances:
90 38 0.34
91 2 0.02
92 31 0.28
93 41 0.37
ACGTcount: A:0.26, C:0.30, G:0.17, T:0.27
Consensus pattern (91 bp):
ATGCATGTCCCAGACATGTCTTACACTGGCTTACATATCAGTGCCGATGCATGTCCCAGACATAT
CTTACACTAGCATCATAACGCAGCCA
Found at i:46130866 original size:15 final size:15
Alignment explanation
Indices: 46130841--46130895 Score: 71
Period size: 15 Copynumber: 3.8 Consensus size: 15
46130831 TCATATATAT
46130841 TATATAATTCAATCAA
1 TATA-AATTCAATCAA
46130857 TATAAATTCAATC-A
1 TATAAATTCAATCAA
*
46130871 -A-AATTTCAATCAA
1 TATAAATTCAATCAA
46130884 TATAAATTCAAT
1 TATAAATTCAAT
46130896 AAATTCATCG
Statistics
Matches: 34, Mismatches: 2, Indels: 7
0.79 0.05 0.16
Matches are distributed among these distances:
12 9 0.26
13 2 0.06
14 2 0.06
15 17 0.50
16 4 0.12
ACGTcount: A:0.51, C:0.13, G:0.00, T:0.36
Consensus pattern (15 bp):
TATAAATTCAATCAA
Found at i:46132082 original size:22 final size:22
Alignment explanation
Indices: 46132057--46132105 Score: 55
Period size: 22 Copynumber: 2.2 Consensus size: 22
46132047 AAGCTTCAAA
46132057 CCTTCAATT-TTCCCTTTTCTCC
1 CCTTC-ATTCTTCCCTTTTCTCC
* * *
46132079 CCTTCTTTCTTTCTTTTTCTCC
1 CCTTCATTCTTCCCTTTTCTCC
46132101 CCTTC
1 CCTTC
46132106 TCTCTGTTTC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
21 2 0.09
22 21 0.91
ACGTcount: A:0.04, C:0.41, G:0.00, T:0.55
Consensus pattern (22 bp):
CCTTCATTCTTCCCTTTTCTCC
Found at i:46132170 original size:5 final size:5
Alignment explanation
Indices: 46132157--46132290 Score: 206
Period size: 5 Copynumber: 27.2 Consensus size: 5
46132147 TTCTTTAGTT
46132157 TATATA TATAA TATAA TATAA TATAA TATAA TATAA TAT-A TATAA TATAA
1 TATA-A TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA
46132207 -ATAA TATAA TATAA T-TAA TATAA TATAA TATAA TATAA T-TAA TATAA
1 TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA
46132254 TAT-A TATAA TATAA TATAATA TATAA TATAA TATAA T
1 TATAA TATAA TATAA TAT-A-A TATAA TATAA TATAA T
46132291 TAAAACATAA
Statistics
Matches: 121, Mismatches: 0, Indels: 15
0.89 0.00 0.11
Matches are distributed among these distances:
4 20 0.17
5 91 0.75
6 6 0.05
7 4 0.03
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (5 bp):
TATAA
Found at i:46132211 original size:38 final size:38
Alignment explanation
Indices: 46132157--46132333 Score: 204
Period size: 38 Copynumber: 4.6 Consensus size: 38
46132147 TTCTTTAGTT
46132157 TATAT-ATATAATATAATATAATATAATATAATATAATA
1 TATATAATATAA-ATAATATAATATAATATAATATAATA
46132195 TATATAATATAAATAATATAATATAAT-TAATATAATA
1 TATATAATATAAATAATATAATATAATATAATATAATA
*
46132232 TAATATAATATAATTAATATAATAT-ATATAATATAATA
1 T-ATATAATATAAATAATATAATATAATATAATATAATA
* * *
46132270 TA-AT-ATATAATATAATATAATTAAAACATAA-AGTATTA
1 TATATAATATAA-ATAATATAA-TATAATATAATA-TAATA
46132308 TTATATAATAATATAATAATATAATA
1 -TATATAAT-ATA-AATAATATAATA
46132334 ATATACTAAA
Statistics
Matches: 122, Mismatches: 5, Indels: 21
0.82 0.03 0.14
Matches are distributed among these distances:
35 6 0.05
36 10 0.08
37 17 0.14
38 62 0.51
39 8 0.07
40 2 0.02
41 4 0.03
42 12 0.10
43 1 0.01
ACGTcount: A:0.58, C:0.01, G:0.01, T:0.41
Consensus pattern (38 bp):
TATATAATATAAATAATATAATATAATATAATATAATA
Found at i:46132236 original size:52 final size:51
Alignment explanation
Indices: 46132169--46132333 Score: 212
Period size: 52 Copynumber: 3.2 Consensus size: 51
46132159 TATATATAAT
46132169 ATAATATAATATAATATAATATAATATATATAATATAAATAATATAATATA
1 ATAATATAATATAATATAATATAATATATATAATATAAATAATATAATATA
*
46132220 ATTAATATAATATAATATAATATAAT-TAATATAATATATATAATATAATATA
1 A-TAATATAATATAATATAATATAATAT-ATATAATATAAATAATATAATATA
* * * *
46132272 AT-ATATAATATAATATAAT-TAAAACATA-AAGTATTATTATATAATAATATA
1 ATAATATAATATAATATAATATAATATATATAA-TATAAATA-AT-ATAATATA
46132323 ATAATATAATA
1 ATAATATAATA
46132334 ATATACTAAA
Statistics
Matches: 101, Mismatches: 6, Indels: 13
0.84 0.05 0.11
Matches are distributed among these distances:
48 2 0.02
49 11 0.11
50 19 0.19
51 13 0.13
52 56 0.55
ACGTcount: A:0.59, C:0.01, G:0.01, T:0.40
Consensus pattern (51 bp):
ATAATATAATATAATATAATATAATATATATAATATAAATAATATAATATA
Found at i:46138084 original size:21 final size:21
Alignment explanation
Indices: 46138058--46138098 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
46138048 AAGCTTGAAG
*
46138058 GCTAAACAGAAGCACATAAGT
1 GCTAAACAGAAACACATAAGT
*
46138079 GCTAAACAGAAACCCATAAG
1 GCTAAACAGAAACACATAAG
46138099 GGTTGAGCTG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.49, C:0.22, G:0.17, T:0.12
Consensus pattern (21 bp):
GCTAAACAGAAACACATAAGT
Found at i:46138153 original size:21 final size:21
Alignment explanation
Indices: 46138083--46138159 Score: 73
Period size: 21 Copynumber: 3.7 Consensus size: 21
46138073 ATAAGTGCTA
46138083 AACAGAAACCCATAAGGGTTG
1 AACAGAAACCCATAAGGGTTG
* * * * * *
46138104 AGCTGAAGCTCATAAGCGCTG
1 AACAGAAACCCATAAGGGTTG
* *
46138125 AACGGAAACCCATTAGGGTTG
1 AACAGAAACCCATAAGGGTTG
*
46138146 AACAGAAACTCATA
1 AACAGAAACCCATA
46138160 TGAGTTAAAT
Statistics
Matches: 40, Mismatches: 16, Indels: 0
0.71 0.29 0.00
Matches are distributed among these distances:
21 40 1.00
ACGTcount: A:0.39, C:0.21, G:0.23, T:0.17
Consensus pattern (21 bp):
AACAGAAACCCATAAGGGTTG
Found at i:46138158 original size:42 final size:42
Alignment explanation
Indices: 46138062--46138159 Score: 124
Period size: 42 Copynumber: 2.3 Consensus size: 42
46138052 TTGAAGGCTA
* *
46138062 AACAGAAGCACATAAGTGCTAAACAGAAACCCATAAGGGTTG
1 AACAGAAGCTCATAAGCGCTAAACAGAAACCCATAAGGGTTG
* * * * *
46138104 AGCTGAAGCTCATAAGCGCTGAACGGAAACCCATTAGGGTTG
1 AACAGAAGCTCATAAGCGCTAAACAGAAACCCATAAGGGTTG
*
46138146 AACAGAAACTCATA
1 AACAGAAGCTCATA
46138160 TGAGTTAAAT
Statistics
Matches: 46, Mismatches: 10, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
42 46 1.00
ACGTcount: A:0.41, C:0.20, G:0.22, T:0.16
Consensus pattern (42 bp):
AACAGAAGCTCATAAGCGCTAAACAGAAACCCATAAGGGTTG
Found at i:46144925 original size:40 final size:40
Alignment explanation
Indices: 46144855--46145113 Score: 285
Period size: 40 Copynumber: 6.5 Consensus size: 40
46144845 AAATCACGTA
* * * * **
46144855 CCTTCGGAATTTAA-CCGGATATAGTTACTCGTTCAAATG
1 CCTTCGGGACTTAACCCGGATTTAGTAACTCGCACAAATG
* *
46144894 CCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAACCCGGATT-TAGTAACTCGCACAAATG
46144934 CCTTCGGGACTTAACCCGGATTTAGTAACTCGCACAAATG
1 CCTTCGGGACTTAACCCGGATTTAGTAACTCGCACAAATG
46144974 CCTTCGGGACTTAACCCGGATTTAGTAACTCGCACAAATG
1 CCTTCGGGACTTAACCCGGATTTAGTAACTCGCACAAATG
** *
46145014 CCTTC-GGATCTTAGTCCGGATTTAGTAACTCGTACAAATG
1 CCTTCGGGA-CTTAACCCGGATTTAGTAACTCGCACAAATG
** * * * *
46145054 CCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCACAAA-G
1 CCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCACAAATG
*
46145094 CCTTCGGGACTTAGCCCGGA
1 CCTTCGGGACTTAACCCGGA
46145114 CATCATTCAA
Statistics
Matches: 195, Mismatches: 19, Indels: 11
0.87 0.08 0.05
Matches are distributed among these distances:
39 14 0.07
40 169 0.87
41 12 0.06
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.27
Consensus pattern (40 bp):
CCTTCGGGACTTAACCCGGATTTAGTAACTCGCACAAATG
Found at i:46153038 original size:39 final size:39
Alignment explanation
Indices: 46152876--46153100 Score: 276
Period size: 40 Copynumber: 5.7 Consensus size: 39
46152866 GCTACTCGTT
* *
46152876 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAT-TAGTAACTCGCA
*
46152916 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGA-TTAGTAACTCGCA
*
46152956 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGA-TTAGTAACTCGCA
* *
46152996 CAAATGCCTTC-GGATCTTAGTCCGGATTAGTAACTCGTA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTAGTAACTCGCA
* * * *
46153035 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGAT-TAGTAAC-TCGCA
46153076 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
46153101 CATCATTCAA
Statistics
Matches: 169, Mismatches: 11, Indels: 10
0.89 0.06 0.05
Matches are distributed among these distances:
39 42 0.25
40 116 0.69
41 11 0.07
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (39 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTAGTAACTCGCA
Found at i:46153060 original size:119 final size:120
Alignment explanation
Indices: 46152876--46153100 Score: 296
Period size: 119 Copynumber: 1.9 Consensus size: 120
46152866 GCTACTCGTT
*
46152876 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
* *
46152941 ATTTAGTAAC-TCGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
66 ATATAGTAACTTAGCACAAA-GCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* * * **
46152996 CAAATGCCTTC-GGATCTTAGTCCGGAT-TAGTAACTCGTACAAATGCCTTC-GGATCTTAGTCC
1 CAAATGCCTTCGGGA-CATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCC
* * *
46153058 GGATATGGTCACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
64 GGATATAGTAACTTAGCACAAAGCCTTCGGGACTTAACCCGGA
46153101 CATCATTCAA
Statistics
Matches: 91, Mismatches: 11, Indels: 7
0.83 0.10 0.06
Matches are distributed among these distances:
118 3 0.03
119 60 0.66
120 28 0.31
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (120 bp):
CAAATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
ATATAGTAACTTAGCACAAAGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:46162006 original size:21 final size:21
Alignment explanation
Indices: 46161973--46162059 Score: 77
Period size: 21 Copynumber: 4.2 Consensus size: 21
46161963 AACAGAAGCA
* *
46161973 CATAAGTGCTGAACAGAAACC
1 CATAAGGGCTGAACGGAAACC
* * * *
46161994 CATAAGGGTTGAATGGAAGCT
1 CATAAGGGCTGAACGGAAACC
*
46162015 CATAA-AGCTGAACGGAAACC
1 CATAAGGGCTGAACGGAAACC
* * *
46162035 CATTAGGGTTGAACGGAAACT
1 CATAAGGGCTGAACGGAAACC
46162056 CATA
1 CATA
46162060 TGAGTTAACT
Statistics
Matches: 49, Mismatches: 16, Indels: 2
0.73 0.24 0.03
Matches are distributed among these distances:
20 14 0.29
21 35 0.71
ACGTcount: A:0.39, C:0.18, G:0.24, T:0.18
Consensus pattern (21 bp):
CATAAGGGCTGAACGGAAACC
Found at i:46162033 original size:41 final size:41
Alignment explanation
Indices: 46161980--46162059 Score: 124
Period size: 41 Copynumber: 2.0 Consensus size: 41
46161970 GCACATAAGT
* *
46161980 GCTGAACAGAAACCCATAAGGGTTGAATGGAAGCTCATAAA
1 GCTGAACAGAAACCCATAAGGGTTGAACGGAAACTCATAAA
* *
46162021 GCTGAACGGAAACCCATTAGGGTTGAACGGAAACTCATA
1 GCTGAACAGAAACCCATAAGGGTTGAACGGAAACTCATA
46162060 TGAGTTAACT
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
41 35 1.00
ACGTcount: A:0.39, C:0.19, G:0.25, T:0.17
Consensus pattern (41 bp):
GCTGAACAGAAACCCATAAGGGTTGAACGGAAACTCATAAA
Found at i:46166305 original size:40 final size:40
Alignment explanation
Indices: 46166268--46166451 Score: 198
Period size: 40 Copynumber: 4.7 Consensus size: 40
46166258 GCTACTCGTT
*
46166268 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
* * *
46166308 CAATTGCCTTCGGGACTTAACCCGGATTTAGTAACGCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* *
46166348 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * * * *
46166387 CAATTGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
46166428 CAAA-GCCTTC-GGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
46166452 CATCATTCAA
Statistics
Matches: 121, Mismatches: 19, Indels: 9
0.81 0.13 0.06
Matches are distributed among these distances:
38 2 0.02
39 41 0.34
40 69 0.57
41 9 0.07
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:46166412 original size:79 final size:81
Alignment explanation
Indices: 46166268--46166451 Score: 216
Period size: 79 Copynumber: 2.3 Consensus size: 81
46166258 GCTACTCGTT
* *
46166268 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAATTGCCTTCGGGACTTAACCCG
1 CAAATGCCTTCGGG-CTTAGCCCGGAATATAGTAACTCGCACAATTGCCTTCGGGACTTAACCCG
* *
46166332 GATTTAGTAAC-GCGCA
65 GATATAGTAACTGAGCA
* **
46166348 CAAATGCCTTCGGGCTTAGCCCGGAAT-TAGTATCTCGCACAATTGCCTTC-GGATCTTAGTCCG
1 CAAATGCCTTCGGGCTTAGCCCGGAATATAGTAACTCGCACAATTGCCTTCGGGA-CTTAACCCG
* * *
46166411 GATATGGTCACTTAGCA
65 GATATAGTAACTGAGCA
*
46166428 CAAA-GCCTTCGGACTTAGCCCGGA
1 CAAATGCCTTCGGGCTTAGCCCGGA
46166452 CATCATTCAA
Statistics
Matches: 90, Mismatches: 11, Indels: 7
0.83 0.10 0.06
Matches are distributed among these distances:
78 3 0.03
79 65 0.72
80 22 0.24
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.25
Consensus pattern (81 bp):
CAAATGCCTTCGGGCTTAGCCCGGAATATAGTAACTCGCACAATTGCCTTCGGGACTTAACCCGG
ATATAGTAACTGAGCA
Found at i:46174884 original size:22 final size:21
Alignment explanation
Indices: 46174829--46174908 Score: 79
Period size: 23 Copynumber: 3.5 Consensus size: 21
46174819 ATATATCAGT
46174829 TTGTAAGAGCTTACTGTTCTCAGC
1 TTGT-AGAGCTTACTGTT-T-AGC
*
46174853 TCGTATGAGCTTACTGTTTAGC
1 TTGTA-GAGCTTACTGTTTAGC
*
46174875 TTGTCAGAGCTTACCGTTTTAGC
1 TTGT-AGAGCTTACTG-TTTAGC
46174898 TTAGTAGAGCT
1 TT-GTAGAGCT
46174909 ACTATTGATC
Statistics
Matches: 49, Mismatches: 3, Indels: 9
0.80 0.05 0.15
Matches are distributed among these distances:
22 15 0.31
23 17 0.35
24 17 0.35
ACGTcount: A:0.20, C:0.19, G:0.23, T:0.39
Consensus pattern (21 bp):
TTGTAGAGCTTACTGTTTAGC
Found at i:46175789 original size:16 final size:16
Alignment explanation
Indices: 46175768--46175799 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
46175758 TATGTAACGC
*
46175768 CCCAAAAATCTCGAAA
1 CCCAAAAATCCCGAAA
46175784 CCCAAAAATCCCGAAA
1 CCCAAAAATCCCGAAA
46175800 TCCCGAACTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.50, C:0.34, G:0.06, T:0.09
Consensus pattern (16 bp):
CCCAAAAATCCCGAAA
Found at i:46177373 original size:29 final size:29
Alignment explanation
Indices: 46177331--46177469 Score: 174
Period size: 29 Copynumber: 4.9 Consensus size: 29
46177321 TGGATGTGAC
* *
46177331 TGGGCCTAACGGGCCATATAAATGTGATT
1 TGGGCCTAATGGGCCATATAAAGGTGATT
*
46177360 TGGGCCTAATGGGCCATATACAGGTGATT
1 TGGGCCTAATGGGCCATATAAAGGTGATT
*
46177389 TGGGCCTAATGGGCCATATACAGGTGATT
1 TGGGCCTAATGGGCCATATAAAGGTGATT
* **
46177418 TGGGCCTAAT-GGCCATATGAATATGA-T
1 TGGGCCTAATGGGCCATATAAAGGTGATT
* * *
46177445 TGGGCTTAATGGGCCAGATACAGGT
1 TGGGCCTAATGGGCCATATAAAGGT
46177470 ATGTGAAATT
Statistics
Matches: 96, Mismatches: 13, Indels: 3
0.86 0.12 0.03
Matches are distributed among these distances:
27 10 0.10
28 21 0.22
29 65 0.68
ACGTcount: A:0.26, C:0.17, G:0.30, T:0.27
Consensus pattern (29 bp):
TGGGCCTAATGGGCCATATAAAGGTGATT
Found at i:46200393 original size:52 final size:50
Alignment explanation
Indices: 46200317--46200414 Score: 124
Period size: 52 Copynumber: 1.9 Consensus size: 50
46200307 ATGAACAAAT
* *
46200317 GAGTTACTTAATACATGACTTAATTTAATGATGCAAACTTTAACTAACGTGG
1 GAGTTACATAATACATGACATAATTT-ATGATGCAAA-TTTAACTAACGTGG
* * * *
46200369 GAGTTACATAATGCATGTCATAATTTATTATGCAAATTTAAGTAAC
1 GAGTTACATAATACATGACATAATTTATGATGCAAATTTAACTAAC
46200415 ATGATGTATT
Statistics
Matches: 40, Mismatches: 6, Indels: 2
0.83 0.12 0.04
Matches are distributed among these distances:
50 9 0.22
51 9 0.22
52 22 0.55
ACGTcount: A:0.38, C:0.12, G:0.14, T:0.36
Consensus pattern (50 bp):
GAGTTACATAATACATGACATAATTTATGATGCAAATTTAACTAACGTGG
Found at i:46203890 original size:80 final size:79
Alignment explanation
Indices: 46203709--46203954 Score: 277
Period size: 80 Copynumber: 3.1 Consensus size: 79
46203699 GGGCATTACA
* * ** *
46203709 GTCATTTTACCCTATAGGG-GTATTACAGTCATTTTACCCTACAAGGGTATTAC-AGTCATTTTA
1 GTCATTTTACCCTAT-GGGAGTATTTCGGTCATTTTACCCTA-TGGGGTATTTCTAGTCATTTTA
*
46203772 TCTTATAGGGGTATTTG
64 -CATATAGGGGTATTTG
46203789 GAAT-ATTTTACCCTATGGGAGTATTTCGGTCATTTTACCCTATGGGGCTATTTCTA-TCATTTT
1 G--TCATTTTACCCTATGGGAGTATTTCGGTCATTTTACCCTATGGGG-TATTTCTAGTCATTTT
*
46203852 ACATATGGGGGTATTTAG
63 ACATATAGGGGTATTT-G
*
46203870 GTCATTTTACCCTATGGGAGTATTTCGGTCATTTTATCCTATGGGGATATTT-TAGTCATTTTAC
1 GTCATTTTACCCTATGGGAGTATTTCGGTCATTTTACCCTATGGGG-TATTTCTAGTCATTTTA-
* *
46203934 CCTATAGAGGTATTTCG
64 CATATAGGGGTATTT-G
46203951 GTCA
1 GTCA
46203955 CCATTTCGAC
Statistics
Matches: 144, Mismatches: 13, Indels: 17
0.83 0.07 0.10
Matches are distributed among these distances:
79 3 0.02
80 75 0.52
81 64 0.44
82 2 0.01
ACGTcount: A:0.23, C:0.16, G:0.20, T:0.41
Consensus pattern (79 bp):
GTCATTTTACCCTATGGGAGTATTTCGGTCATTTTACCCTATGGGGTATTTCTAGTCATTTTACA
TATAGGGGTATTTG
Found at i:46203948 original size:27 final size:26
Alignment explanation
Indices: 46203683--46203954 Score: 228
Period size: 27 Copynumber: 10.1 Consensus size: 26
46203673 GGTAAATCAA
* * * *
46203683 TCATTTTTCCTTATAGGGGCATTACAG
1 TCATTTTACCCTAT-GGGGTATTTCAG
*
46203710 TCATTTTACCCTATAGGGGTATTACAG
1 TCATTTTACCCTAT-GGGGTATTTCAG
** *
46203737 TCATTTTACCCTACAAGGGTATTACAG
1 TCATTTTACCCTA-TGGGGTATTTCAG
* * * *
46203764 TCATTTTATCTTATAGGGGTATTTGGAA
1 TCATTTTACCCTAT-GGGGTATTT-CAG
*
46203792 T-ATTTTACCCTATGGGAGTATTTCGG
1 TCATTTTACCCTATGGG-GTATTTCAG
46203818 TCATTTTACCCTATGGGGCTATTTCTA-
1 TCATTTTACCCTATGGGG-TATTTC-AG
*
46203845 TCATTTTA-CATATGGGGGTATTT-AGG
1 TCATTTTACCCTAT-GGGGTATTTCA-G
*
46203871 TCATTTTACCCTATGGGAGTATTTCGG
1 TCATTTTACCCTATGGG-GTATTTCAG
* *
46203898 TCATTTTATCCTATGGGGATATTTTAG
1 TCATTTTACCCTATGGGG-TATTTCAG
* *
46203925 TCATTTTACCCTATAGAGGTATTTCGG
1 TCATTTTACCCTAT-GGGGTATTTCAG
46203952 TCA
1 TCA
46203955 CCATTTCGAC
Statistics
Matches: 202, Mismatches: 28, Indels: 30
0.78 0.11 0.12
Matches are distributed among these distances:
24 1 0.00
26 26 0.13
27 170 0.84
28 5 0.02
ACGTcount: A:0.23, C:0.16, G:0.19, T:0.42
Consensus pattern (26 bp):
TCATTTTACCCTATGGGGTATTTCAG
Found at i:46206413 original size:40 final size:40
Alignment explanation
Indices: 46206352--46206522 Score: 258
Period size: 40 Copynumber: 4.3 Consensus size: 40
46206342 CCTTCGAGGT
* *
46206352 TTAG-CCGGATATAGCT-ACTCGCTCAAATGCCTTCGGGAC
1 TTAGCCCGGTTATAG-TAACTCGCACAAATGCCTTCGGGAC
* *
46206391 TTAGCGCGGTTATAGTAACTCGCACAATTGCCTTCGGGAC
1 TTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGAC
*
46206431 TTAGCCCGGTTATAGTAACTCGCACAATTGCCTTCGGGAC
1 TTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGAC
*
46206471 TTGGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGG-C
1 TTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGAC
46206510 TTAGCCCGGTTAT
1 TTAGCCCGGTTAT
46206523 CAATCCGAAT
Statistics
Matches: 122, Mismatches: 8, Indels: 4
0.91 0.06 0.03
Matches are distributed among these distances:
39 18 0.15
40 104 0.85
ACGTcount: A:0.22, C:0.27, G:0.24, T:0.27
Consensus pattern (40 bp):
TTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGAC
Found at i:46211836 original size:40 final size:40
Alignment explanation
Indices: 46211781--46211975 Score: 311
Period size: 40 Copynumber: 4.9 Consensus size: 40
46211771 GGATATAGCT
* *
46211781 ACTCGCTCAAATGCCTTCGGGACTTAGCGCGGTTATAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTA
* *
46211821 ACTCGTACAATTGCCTTCGGGACTTAGCCCGGTTATAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTA
* *
46211861 ACTCGCACAATTGCCTTCGGGACTTGGCCCGGTTATAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTA
* *
46211901 ACTTGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTA
46211941 ACTCGCACAAATGCCTTCGGG-CTTAGCCCGGTTAT
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTAT
46211976 CAATCCGAAT
Statistics
Matches: 143, Mismatches: 12, Indels: 1
0.92 0.08 0.01
Matches are distributed among these distances:
39 13 0.09
40 130 0.91
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.27
Consensus pattern (40 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTA
Found at i:46215196 original size:30 final size:30
Alignment explanation
Indices: 46215162--46215219 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
46215152 TTTTCGAGCA
* * *
46215162 TAGGGGTAAAATGGTTATTTTGCCAAAGTC
1 TAGGGGCAAAATGGTCATTTTACCAAAGTC
46215192 TAGGGGCAAAATGGTCATTTTACCAAAG
1 TAGGGGCAAAATGGTCATTTTACCAAAG
46215220 ATGTGAATTT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.33, C:0.12, G:0.26, T:0.29
Consensus pattern (30 bp):
TAGGGGCAAAATGGTCATTTTACCAAAGTC
Found at i:46215619 original size:46 final size:46
Alignment explanation
Indices: 46215562--46215733 Score: 186
Period size: 46 Copynumber: 3.7 Consensus size: 46
46215552 TCTTATGTAC
* * *
46215562 CAGTGTAAGACATGTCTGAGACATGCATTGGCCACATTATGTGTGA
1 CAGTGTAAGACATGTCTGGGACATGCATCGGCCACATTATGGGTGA
* * *
46215608 CAGTATAAGACATGTCAGGGACATGCATCGGCCACATTATGGGTGC
1 CAGTGTAAGACATGTCTGGGACATGCATCGGCCACATTATGGGTGA
* * * * *
46215654 CAGTGTAAGACCATGTCTGGGACATGGCATCAGCGTAGA-GATGAGTG-
1 CAGTGTAAGA-CATGTCTGGGACAT-GCATCGGC-CACATTATGGGTGA
*
46215701 CTAGTGTAAGACGTGTCTGGGACATGCATCGGC
1 C-AGTGTAAGACATGTCTGGGACATGCATCGGC
46215734 TAAGAGTTGT
Statistics
Matches: 107, Mismatches: 15, Indels: 8
0.82 0.12 0.06
Matches are distributed among these distances:
46 56 0.52
47 27 0.25
48 22 0.21
49 2 0.02
ACGTcount: A:0.27, C:0.19, G:0.30, T:0.24
Consensus pattern (46 bp):
CAGTGTAAGACATGTCTGGGACATGCATCGGCCACATTATGGGTGA
Found at i:46215754 original size:44 final size:47
Alignment explanation
Indices: 46215650--46215873 Score: 154
Period size: 49 Copynumber: 4.7 Consensus size: 47
46215640 CACATTATGG
*
46215650 GTGCCAGTGTAAGACCATGTCTGGGACATGGCATCAGCGTAGAGATGA
1 GTGCTAGTGTAAGA-CATGTCTGGGACATGGCATCAGCGTAGAGATGA
* * *
46215698 GTGCTAGTGTAAGACGTGTCTGGGACAT-GCATCGGC-TA-AGA-GTT
1 GTGCTAGTGTAAGACATGTCTGGGACATGGCATCAGCGTAGAGATG-A
*** * * * *
46215742 GTGCTAGTGTAAGACATGTCCAAGACAT-GCATTAGCACGTATATACGA
1 GTGCTAGTGTAAGACATGTCTGGGACATGGCATCAG--CGTAGAGATGA
* * * * * * *
46215790 GAGATAGTATAAGACCATGTCTGGGACGTGGCATCAGCCTCGATGAGGA
1 GTGCTAGTGTAAGA-CATGTCTGGGACATGGCATCAGCGTAGA-GATGA
* *
46215839 -TAGCCAGTGTAAGACCATATCTGGGACATGGCATC
1 GT-GCTAGTGTAAGA-CATGTCTGGGACATGGCATC
46215874 GGCAACTTAT
Statistics
Matches: 135, Mismatches: 31, Indels: 19
0.73 0.17 0.10
Matches are distributed among these distances:
43 1 0.01
44 32 0.24
45 2 0.01
46 8 0.06
47 15 0.11
48 29 0.21
49 42 0.31
50 6 0.04
ACGTcount: A:0.28, C:0.19, G:0.30, T:0.23
Consensus pattern (47 bp):
GTGCTAGTGTAAGACATGTCTGGGACATGGCATCAGCGTAGAGATGA
Found at i:46216687 original size:55 final size:54
Alignment explanation
Indices: 46216604--46216709 Score: 176
Period size: 55 Copynumber: 1.9 Consensus size: 54
46216594 TGCACTTAAA
46216604 ATTTTAAGTCAGTATTGTACACAGGCAGGCCACACAAGTGTGTGCCATGGCCGT
1 ATTTTAAGTCAGTATTGTACACAGGCAGGCCACACAAGTGTGTGCCATGGCCGT
* **
46216658 ATTTTAAAGTCAGTATTGTACACGGGCAGGCCACACTGGTGTGTGCCATGGC
1 ATTTT-AAGTCAGTATTGTACACAGGCAGGCCACACAAGTGTGTGCCATGGC
46216710 TGTGTTAAAG
Statistics
Matches: 48, Mismatches: 3, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
54 5 0.10
55 43 0.90
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (54 bp):
ATTTTAAGTCAGTATTGTACACAGGCAGGCCACACAAGTGTGTGCCATGGCCGT
Found at i:46216734 original size:53 final size:55
Alignment explanation
Indices: 46216609--46216736 Score: 161
Period size: 55 Copynumber: 2.4 Consensus size: 55
46216599 TTAAAATTTT
* * *
46216609 AAGTCAGTATTGTACACAGGCAGGCCACACAAGTGTGTGCCATGGCCGTATTTTA
1 AAGTCAGTATTGCACACGGGCAGGCCACACAAGTGTGTGCCATGGCCGTATGTTA
* ** *
46216664 AAGTCAGTATTGTACACGGGCAGGCCACACTGGTGTGTGCCATGG-C-TGTGTTA
1 AAGTCAGTATTGCACACGGGCAGGCCACACAAGTGTGTGCCATGGCCGTATGTTA
* *
46216717 AAGTTAGTGTTGCACACGGG
1 AAGTCAGTATTGCACACGGG
46216737 ATAAGGGCAC
Statistics
Matches: 65, Mismatches: 8, Indels: 2
0.87 0.11 0.03
Matches are distributed among these distances:
53 22 0.34
54 1 0.02
55 42 0.65
ACGTcount: A:0.24, C:0.20, G:0.30, T:0.26
Consensus pattern (55 bp):
AAGTCAGTATTGCACACGGGCAGGCCACACAAGTGTGTGCCATGGCCGTATGTTA
Found at i:46222202 original size:19 final size:19
Alignment explanation
Indices: 46222180--46222216 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
46222170 AAAAAAATCA
46222180 TAAAAATATAAAAATATTT
1 TAAAAATATAAAAATATTT
* *
46222199 TAAAATTTTAAAAATATT
1 TAAAAATATAAAAATATT
46222217 AAATATTAAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (19 bp):
TAAAAATATAAAAATATTT
Found at i:46222203 original size:27 final size:26
Alignment explanation
Indices: 46222173--46222223 Score: 66
Period size: 27 Copynumber: 1.9 Consensus size: 26
46222163 ATTTTTTAAA
46222173 AAAATCATAAAAATATAAAAATATTTT
1 AAAATCATAAAAATAT-AAAATATTTT
** *
46222200 AAAATTTTAAAAATATTAAATATT
1 AAAATCATAAAAATATAAAATATT
46222224 AAATATTTAT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
26 7 0.33
27 14 0.67
ACGTcount: A:0.61, C:0.02, G:0.00, T:0.37
Consensus pattern (26 bp):
AAAATCATAAAAATATAAAATATTTT
Found at i:46222265 original size:32 final size:31
Alignment explanation
Indices: 46222229--46222377 Score: 86
Period size: 30 Copynumber: 5.0 Consensus size: 31
46222219 ATATTAAATA
* * *
46222229 TTTATATAAACTTATATAATTTATAAAAAAAC
1 TTTATA-AAAATTATAAAAATTATAAAAAAAC
46222261 TTTATAAAAATTATAAAAATTAT-AAAAAA-
1 TTTATAAAAATTATAAAAATTATAAAAAAAC
*
46222290 -TTATAAAAATATTAAAAAAATT-T----AAAC
1 TTTAT-AAAA-ATTATAAAAATTATAAAAAAAC
** *
46222317 -TTAT-AAAATTATAAAAAGAATCATAAAAA-
1 TTTATAAAAATTATAAAAATTAT-AAAAAAAC
* *
46222346 TTTATAATAAATTCTAATACATTATAAAAAAA
1 TTTATAA-AAATTATAA-AAATTATAAAAAAA
46222378 TTAAGAACAT
Statistics
Matches: 92, Mismatches: 12, Indels: 26
0.71 0.09 0.20
Matches are distributed among these distances:
24 9 0.10
25 4 0.04
26 3 0.03
27 4 0.04
28 4 0.04
29 5 0.05
30 24 0.26
31 15 0.16
32 20 0.22
33 4 0.04
ACGTcount: A:0.60, C:0.04, G:0.01, T:0.35
Consensus pattern (31 bp):
TTTATAAAAATTATAAAAATTATAAAAAAAC
Found at i:46222279 original size:10 final size:10
Alignment explanation
Indices: 46222262--46222376 Score: 84
Period size: 10 Copynumber: 12.0 Consensus size: 10
46222252 TAAAAAAACT
46222262 TTAT-AAAAA
1 TTATAAAAAA
46222271 TTAT-AAAAA
1 TTATAAAAAA
46222280 TTATAAAAAA
1 TTATAAAAAA
46222290 TTATAAAAATA
1 TTATAAAAA-A
46222301 TTA-AAAAAA
1 TTATAAAAAA
*
46222310 TT-T--AAAC
1 TTATAAAAAA
46222317 TTAT--AAAA
1 TTATAAAAAA
46222325 TTATAAAAAGAA
1 TTAT-AAAA-AA
* *
46222337 TCATAAAAAT
1 TTATAAAAAA
*
46222347 TTATAATAAA
1 TTATAAAAAA
* * *
46222357 TTCTAATACA
1 TTATAAAAAA
46222367 TTATAAAAAA
1 TTATAAAAAA
46222377 ATTAAGAACA
Statistics
Matches: 86, Mismatches: 12, Indels: 15
0.76 0.11 0.13
Matches are distributed among these distances:
7 5 0.06
8 8 0.09
9 16 0.19
10 42 0.49
11 10 0.12
12 5 0.06
ACGTcount: A:0.63, C:0.03, G:0.01, T:0.33
Consensus pattern (10 bp):
TTATAAAAAA
Found at i:46222316 original size:77 final size:77
Alignment explanation
Indices: 46222235--46222381 Score: 192
Period size: 77 Copynumber: 1.9 Consensus size: 77
46222225 AATATTTATA
* *
46222235 TAAACTTATATAATTTATAAAAA-AACTTTATAAAAA-TTATAA-AAATTATAAAAAATTATAAA
1 TAAACTTATA-AAATTATAAAAAGAA--TCATAAAAATTTATAATAAATTATAAAAAATTATAAA
*
46222297 AATATTAAAAAAATT
63 AAAATTAAAAAAATT
* * *
46222312 TAAACTTATAAAATTATAAAAAGAATCATAAAAATTTATAATAAATTCTAATACATTATAAAAAA
1 TAAACTTATAAAATTATAAAAAGAATCATAAAAATTTATAATAAATTATAAAAAATTATAAAAAA
46222377 ATTAA
66 ATTAA
46222382 GAACATTTTT
Statistics
Matches: 61, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
75 8 0.13
76 17 0.28
77 36 0.59
ACGTcount: A:0.61, C:0.04, G:0.01, T:0.34
Consensus pattern (77 bp):
TAAACTTATAAAATTATAAAAAGAATCATAAAAATTTATAATAAATTATAAAAAATTATAAAAAA
ATTAAAAAAATT
Found at i:46222982 original size:9 final size:8
Alignment explanation
Indices: 46222911--46222989 Score: 50
Period size: 9 Copynumber: 8.8 Consensus size: 8
46222901 TTTTAAAATA
46222911 AATTTTAT
1 AATTTTAT
* *
46222919 ATTTTTTT
1 AATTTTAT
*
46222927 GAATTTTTT
1 -AATTTTAT
46222936 ATATTTTAT
1 A-ATTTTAT
46222945 AAGTTTATAT
1 AA-TTT-TAT
46222955 AATTTTTAAAT
1 AA-TTTT--AT
46222966 AATTTTAT
1 AATTTTAT
46222974 AACTTTTAT
1 AA-TTTTAT
46222983 AAATTTT
1 -AATTTT
46222990 TTATAAATGA
Statistics
Matches: 58, Mismatches: 5, Indels: 15
0.74 0.06 0.19
Matches are distributed among these distances:
8 12 0.21
9 28 0.48
10 14 0.24
11 4 0.07
ACGTcount: A:0.34, C:0.01, G:0.03, T:0.62
Consensus pattern (8 bp):
AATTTTAT
Found at i:46223113 original size:18 final size:19
Alignment explanation
Indices: 46223090--46223125 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
46223080 TTTAAAATAT
46223090 ATTTTTAT-ATTTTTAATG
1 ATTTTTATAATTTTTAATG
46223108 ATTTTTATAATTTTTAAT
1 ATTTTTATAATTTTTAAT
46223126 AAAAAATGAA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
18 8 0.47
19 9 0.53
ACGTcount: A:0.31, C:0.00, G:0.03, T:0.67
Consensus pattern (19 bp):
ATTTTTATAATTTTTAATG
Found at i:46223120 original size:9 final size:9
Alignment explanation
Indices: 46222908--46223123 Score: 56
Period size: 10 Copynumber: 23.1 Consensus size: 9
46222898 TTTTTTTAAA
*
46222908 ATAAATTTT
1 ATAATTTTT
46222917 AT-ATTTTT
1 ATAATTTTT
*
46222925 TTGAATTTTT
1 AT-AATTTTT
46222935 -T-ATATTTT
1 ATAAT-TTTT
*
46222943 ATAAGTTTAT
1 ATAA-TTTTT
46222953 ATAATTTTT
1 ATAATTTTT
46222962 A-AATAATTTT
1 ATAAT--TTTT
*
46222972 ATAACTTTT
1 ATAATTTTT
46222981 ATAAATTTTTT
1 AT-AA-TTTTT
** *
46222992 ATAAATGATG
1 AT-AATTTTT
*
46223002 AGAATTTTT
1 ATAATTTTT
*
46223011 AGGAATTTTT
1 A-TAATTTTT
46223021 -TAAGTTTTAT
1 ATAA-TTTT-T
46223031 ATAA--TTT
1 ATAATTTTT
46223038 ATAA-TTTT
1 ATAATTTTT
* *
46223046 AGAAGTTTAT
1 ATAA-TTTTT
* *
46223056 ATAAAATATT
1 AT-AATTTTT
* *
46223066 A-AAATATT
1 ATAATTTTT
46223074 ATAATTTTT
1 ATAATTTTT
46223083 AAAATATATTTTT
1 ---ATA-ATTTTT
46223096 AT-ATTTTT
1 ATAATTTTT
*
46223104 AATGATTTTT
1 -ATAATTTTT
46223114 ATAATTTTT
1 ATAATTTTT
46223123 A
1 A
46223124 ATAAAAAATG
Statistics
Matches: 158, Mismatches: 23, Indels: 52
0.68 0.10 0.22
Matches are distributed among these distances:
7 7 0.04
8 37 0.23
9 40 0.25
10 48 0.30
11 17 0.11
12 3 0.02
13 6 0.04
ACGTcount: A:0.38, C:0.00, G:0.05, T:0.56
Consensus pattern (9 bp):
ATAATTTTT
Found at i:46225950 original size:13 final size:13
Alignment explanation
Indices: 46225932--46225959 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
46225922 ACCCCTGCTT
46225932 TATTTAATTCTTC
1 TATTTAATTCTTC
46225945 TATTTAATTCTTC
1 TATTTAATTCTTC
46225958 TA
1 TA
46225960 CAAGAATAAC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.25, C:0.14, G:0.00, T:0.61
Consensus pattern (13 bp):
TATTTAATTCTTC
Found at i:46228977 original size:21 final size:21
Alignment explanation
Indices: 46228951--46228991 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
46228941 AGACGAGCAA
* *
46228951 TACTCCACAGCAGGTGGAGTG
1 TACTCCAAAACAGGTGGAGTG
46228972 TACTCCAAAACAGGTGGAGT
1 TACTCCAAAACAGGTGGAGT
46228992 TTGAGCAGAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.29, C:0.22, G:0.29, T:0.20
Consensus pattern (21 bp):
TACTCCAAAACAGGTGGAGTG
Found at i:46234677 original size:6 final size:6
Alignment explanation
Indices: 46234668--46234715 Score: 53
Period size: 6 Copynumber: 7.8 Consensus size: 6
46234658 TAGGTGACAA
* *
46234668 AATCAG AATCAG AATCAG TATCAGG TAA-CAG AATCAA AATCAG AATCA
1 AATCAG AATCAG AATCAG AATCA-G -AATCAG AATCAG AATCAG AATCA
46234716 ATATCAGGTA
Statistics
Matches: 35, Mismatches: 4, Indels: 6
0.78 0.09 0.13
Matches are distributed among these distances:
5 2 0.06
6 29 0.83
7 3 0.09
8 1 0.03
ACGTcount: A:0.50, C:0.17, G:0.15, T:0.19
Consensus pattern (6 bp):
AATCAG
Found at i:46234703 original size:31 final size:31
Alignment explanation
Indices: 46234610--46234744 Score: 130
Period size: 31 Copynumber: 4.4 Consensus size: 31
46234600 TAACCCATTA
* * *
46234610 CAGAATAAGAAACATTATCA-G-AACTAGAAT
1 CAGAATCAGAATCAGTATCAGGTAAC-AGAAT
* * * * * *
46234640 CAGAATCAAAATTAGAATTAGGTGACAAAAT
1 CAGAATCAGAATCAGTATCAGGTAACAGAAT
46234671 CAGAATCAGAATCAGTATCAGGTAACAGAAT
1 CAGAATCAGAATCAGTATCAGGTAACAGAAT
* *
46234702 CAAAATCAGAATCAATATCAGGTAACAGAAT
1 CAGAATCAGAATCAGTATCAGGTAACAGAAT
* *
46234733 TAAAATCAGAAT
1 CAGAATCAGAAT
46234745 GTGAATGCAA
Statistics
Matches: 85, Mismatches: 18, Indels: 3
0.80 0.17 0.03
Matches are distributed among these distances:
30 13 0.15
31 70 0.82
32 2 0.02
ACGTcount: A:0.51, C:0.13, G:0.15, T:0.21
Consensus pattern (31 bp):
CAGAATCAGAATCAGTATCAGGTAACAGAAT
Found at i:46234716 original size:12 final size:12
Alignment explanation
Indices: 46234665--46234722 Score: 55
Period size: 12 Copynumber: 4.8 Consensus size: 12
46234655 AATTAGGTGA
46234665 CAAAATCAGAAT
1 CAAAATCAGAAT
* *
46234677 CAGAATCAGTAT
1 CAAAATCAGAAT
*
46234689 CAGGTAA-CAGAAT
1 CA--AAATCAGAAT
46234702 CAAAATCAGAAT
1 CAAAATCAGAAT
*
46234714 CAATATCAG
1 CAAAATCAG
46234723 GTAACAGAAT
Statistics
Matches: 37, Mismatches: 6, Indels: 6
0.76 0.12 0.12
Matches are distributed among these distances:
11 2 0.05
12 26 0.70
13 7 0.19
14 2 0.05
ACGTcount: A:0.50, C:0.17, G:0.14, T:0.19
Consensus pattern (12 bp):
CAAAATCAGAAT
Found at i:46234732 original size:19 final size:19
Alignment explanation
Indices: 46234677--46234732 Score: 54
Period size: 19 Copynumber: 3.3 Consensus size: 19
46234667 AAATCAGAAT
*
46234677 CAGAATCAGTATCAGGTAA
1 CAGAATCAATATCAGGTAA
46234696 CAGAATCAA-A--A--T--
1 CAGAATCAATATCAGGTAA
46234708 CAGAATCAATATCAGGTAA
1 CAGAATCAATATCAGGTAA
46234727 CAGAAT
1 CAGAAT
46234733 TAAAATCAGA
Statistics
Matches: 29, Mismatches: 1, Indels: 14
0.66 0.02 0.32
Matches are distributed among these distances:
12 9 0.31
13 1 0.03
14 1 0.03
15 1 0.03
16 1 0.03
17 1 0.03
18 1 0.03
19 14 0.48
ACGTcount: A:0.48, C:0.16, G:0.16, T:0.20
Consensus pattern (19 bp):
CAGAATCAATATCAGGTAA
Found at i:46235287 original size:27 final size:27
Alignment explanation
Indices: 46235257--46235373 Score: 112
Period size: 27 Copynumber: 4.3 Consensus size: 27
46235247 AGGGTAAAAT
* *
46235257 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTTTACCCTACAAGGGTATTTC
* *
46235284 GGTAATTCTACCTTAC-AGGAGTATTTC
1 GGTAATTTTACCCTACAAGG-GTATTTC
* ** * * *
46235311 AGTAATAATATCCTATAGGGGTATTTC
1 GGTAATTTTACCCTACAAGGGTATTTC
46235338 GGT-ATTTCTACCCTACAAGGGTATTTC
1 GGTAATTT-TACCCTACAAGGGTATTTC
46235365 GGTAATTTT
1 GGTAATTTT
46235374 GTAAATCAAG
Statistics
Matches: 69, Mismatches: 17, Indels: 8
0.73 0.18 0.09
Matches are distributed among these distances:
26 5 0.07
27 58 0.84
28 6 0.09
ACGTcount: A:0.26, C:0.18, G:0.19, T:0.37
Consensus pattern (27 bp):
GGTAATTTTACCCTACAAGGGTATTTC
Found at i:46235383 original size:27 final size:27
Alignment explanation
Indices: 46235353--46235809 Score: 330
Period size: 27 Copynumber: 16.9 Consensus size: 27
46235343 TTCTACCCTA
* **
46235353 CAAGGGTATTTCGGTAATTTTGTAAAT
1 CAAGGGTATTTTGGTAATTTTACAAAT
*** * * **
46235380 CAAGGGTAAAATAGTAATTCTGTAAAT
1 CAAGGGTATTTTGGTAATTTTACAAAT
* *
46235407 CAAGGGTACTTTGGTAATTTTACAAGT
1 CAAGGGTATTTTGGTAATTTTACAAAT
* * *** * **
46235434 CGAGGGTACTTCAATAATTTTATAGGT
1 CAAGGGTATTTTGGTAATTTTACAAAT
* ** *
46235461 CGAGGGTATTTCAGTAATTTCACAAAT
1 CAAGGGTATTTTGGTAATTTTACAAAT
* *
46235488 TAGGGGTATTTTGGTAATTTTACAAA-
1 CAAGGGTATTTTGGTAATTTTACAAAT
* *
46235514 CTAGGGGTATTTTGATAATTTTACAAA-
1 C-AAGGGTATTTTGGTAATTTTACAAAT
* ** *
46235541 CTAGGGGTATTTTGGTAATTTTGTAAAC
1 C-AAGGGTATTTTGGTAATTTTACAAAT
46235569 CAAGGGTATTTTGGTAATTTTACAAA-
1 CAAGGGTATTTTGGTAATTTTACAAAT
* * * *
46235595 CTAGGGGTATTTTGGTGATTTTATAAAC
1 C-AAGGGTATTTTGGTAATTTTACAAAT
* *
46235623 CAAGGGTATTCTAGTAATTTTACAAA-
1 CAAGGGTATTTTGGTAATTTTACAAAT
* *
46235649 CCAGTGGTATTTTGGTAATTTTATAAA-
1 CAAG-GGTATTTTGGTAATTTTACAAAT
* * *
46235676 CTAATGGTATTCTAGTAATTTTACAAAT
1 C-AAGGGTATTTTGGTAATTTTACAAAT
* * ** *
46235704 TAGGGGTATTTTGGTAATTTTGTAAAC
1 CAAGGGTATTTTGGTAATTTTACAAAT
46235731 CAAGGGTATTTTGGTAATTTTACAAAT
1 CAAGGGTATTTTGGTAATTTTACAAAT
* * * * *
46235758 CGAGGATATTTGGGTAATTTTATAAAC
1 CAAGGGTATTTTGGTAATTTTACAAAT
** *
46235785 CTGGGGTACTTTGGTAATTTTACAA
1 CAAGGGTATTTTGGTAATTTTACAA
46235810 CTGGGGGTAT
Statistics
Matches: 342, Mismatches: 81, Indels: 14
0.78 0.19 0.03
Matches are distributed among these distances:
26 4 0.01
27 335 0.98
28 3 0.01
ACGTcount: A:0.32, C:0.09, G:0.21, T:0.39
Consensus pattern (27 bp):
CAAGGGTATTTTGGTAATTTTACAAAT
Found at i:46235506 original size:54 final size:53
Alignment explanation
Indices: 46235463--46235819 Score: 366
Period size: 54 Copynumber: 6.6 Consensus size: 53
46235453 TTATAGGTCG
* * *
46235463 AGGGTATTTCAGTAATTTCACAAATTAGGGGTATTTTGGTAATTTTACAAACTA
1 AGGGTATTTCAGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTATAAAC-A
* * *
46235517 GGGGTATTT-TGATAATTTTACAAACTAGGGGTATTTTGGTAATTTTGTAAACCA
1 AGGGTATTTCAG-TAATTTTACAAACTAGGGGTATTTTGGTAATTTTATAAA-CA
** *
46235571 AGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTGATTTTATAAACCA
1 AGGGTATTTCAGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTATAAA-CA
* *
46235625 AGGGTA-TTCTAGTAATTTTACAAACCAGTGGTATTTTGGTAATTTTATAAACTA
1 AGGGTATTTC-AGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTATAAAC-A
* * *
46235679 ATGGTA-TTCTAGTAATTTTACAAATTAGGGGTATTTTGGTAATTTTGTAAACCA
1 AGGGTATTTC-AGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTATAAA-CA
** * * * *
46235733 AGGGTATTTTGGTAATTTTACAAA-TCGAGGATATTTGGGTAATTTTATAAACCT
1 AGGGTATTTCAGTAATTTTACAAACTAG-GGGTATTTTGGTAATTTTATAAA-CA
* * *
46235787 GGGGTACTTT-GGTAATTTTAC-AACTGGGGGTAT
1 AGGGTA-TTTCAGTAATTTTACAAACTAGGGGTAT
46235820 ATCAGTAATT
Statistics
Matches: 262, Mismatches: 31, Indels: 21
0.83 0.10 0.07
Matches are distributed among these distances:
53 13 0.05
54 241 0.92
55 8 0.03
ACGTcount: A:0.31, C:0.08, G:0.21, T:0.40
Consensus pattern (53 bp):
AGGGTATTTCAGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTATAAACA
Found at i:46235791 original size:81 final size:80
Alignment explanation
Indices: 46235491--46235805 Score: 364
Period size: 81 Copynumber: 3.9 Consensus size: 80
46235481 CACAAATTAG
* * *
46235491 GGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGATAATTTTACAAACTAGGGGTATTTTGG
1 GGGTATTTTGGTAATTTTACAAACGAGGGGTATTTTGGTAATTTTATAAACT-GGGGTATTTTGG
46235556 TAATTTTGTAAACCAA
65 TAATTTTGTAAACCAA
* * ** * *
46235572 GGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTGATTTTATAAACCAAGGGTATTCTAG
1 GGGTATTTTGGTAATTTTACAAACGAGGGGTATTTTGGTAATTTTATAAA-CTGGGGTATTTTGG
**
46235637 TAATTTTACAAACC-A
65 TAATTTTGTAAACCAA
* * ** * * * *
46235652 GTGGTATTTTGGTAATTTTATAAACTAATGGTATTCTAGTAATTTTACAAATTAGGGGTATTTTG
1 G-GGTATTTTGGTAATTTTACAAACGAGGGGTATTTTGGTAATTTTATAAACT-GGGGTATTTTG
46235717 GTAATTTTGTAAACCAA
64 GTAATTTTGTAAACCAA
* * *
46235734 GGGTATTTTGGTAATTTTACAAATCGA-GGATATTTGGGTAATTTTATAAACCTGGGGTACTTTG
1 GGGTATTTTGGTAATTTTACAAA-CGAGGGGTATTTTGGTAATTTTATAAA-CTGGGGTATTTTG
46235798 GTAATTTT
64 GTAATTTT
46235806 ACAACTGGGG
Statistics
Matches: 195, Mismatches: 33, Indels: 12
0.81 0.14 0.05
Matches are distributed among these distances:
80 2 0.01
81 187 0.96
82 6 0.03
ACGTcount: A:0.30, C:0.08, G:0.21, T:0.42
Consensus pattern (80 bp):
GGGTATTTTGGTAATTTTACAAACGAGGGGTATTTTGGTAATTTTATAAACTGGGGTATTTTGGT
AATTTTGTAAACCAA
Found at i:46246376 original size:27 final size:25
Alignment explanation
Indices: 46246340--46246459 Score: 123
Period size: 27 Copynumber: 4.5 Consensus size: 25
46246330 ATAATGTGAA
* *
46246340 AGAGTCACCAGTACAGATGATCGTGGC
1 AGAGCCACCAG-ACAGAT-ATTGTGGC
*
46246367 AGGGCCACCAGAACAGATATATGTGGC
1 AGAGCCACCAG-ACAGATAT-TGTGGC
46246394 AGAGCCACCAGATCAGATATTTGTGGC
1 AGAGCCACCAGA-CAGATA-TTGTGGC
*
46246421 AGAGCCACCAGATCAGATATTTGTCGC
1 AGAGCCACCAGA-CAGATA-TTGTGGC
*
46246448 ATAGCCACCAGA
1 AGAGCCACCAGA
46246460 ACGCTTCCTC
Statistics
Matches: 83, Mismatches: 7, Indels: 6
0.86 0.07 0.06
Matches are distributed among these distances:
26 3 0.04
27 79 0.95
28 1 0.01
ACGTcount: A:0.32, C:0.24, G:0.26, T:0.18
Consensus pattern (25 bp):
AGAGCCACCAGACAGATATTGTGGC
Found at i:46246404 original size:54 final size:54
Alignment explanation
Indices: 46246321--46246459 Score: 149
Period size: 54 Copynumber: 2.6 Consensus size: 54
46246311 AGCATGGCTG
* ** * *
46246321 CCAGAATAGATA-ATGTGAAAGAGTCACCAG-TACAGATGA-TCGTGGCAGGGCCA
1 CCAGAACAGATATATGTGGCAGAGCCACCAGAT-CAGAT-ATTCGTGGCAGAGCCA
*
46246374 CCAGAACAGATATATGTGGCAGAGCCACCAGATCAGATATTTGTGGCAGAGCCA
1 CCAGAACAGATATATGTGGCAGAGCCACCAGATCAGATATTCGTGGCAGAGCCA
* * * *
46246428 CCAGATCAGATATTTGTCGCATAGCCACCAGA
1 CCAGAACAGATATATGTGGCAGAGCCACCAGA
46246460 ACGCTTCCTC
Statistics
Matches: 73, Mismatches: 10, Indels: 5
0.83 0.11 0.06
Matches are distributed among these distances:
53 12 0.16
54 60 0.82
55 1 0.01
ACGTcount: A:0.34, C:0.22, G:0.25, T:0.19
Consensus pattern (54 bp):
CCAGAACAGATATATGTGGCAGAGCCACCAGATCAGATATTCGTGGCAGAGCCA
Found at i:46246626 original size:28 final size:26
Alignment explanation
Indices: 46246564--46246637 Score: 85
Period size: 28 Copynumber: 2.8 Consensus size: 26
46246554 AAATTAACCC
** *
46246564 TAGGGGTATAACGGTAATTTTACACC
1 TAGGGGTATAATAGTAATTTTACACA
*
46246590 TAGGGGTATAATAGTAATTTTCCATACA
1 TAGGGGTATAATAGTAATTTT--ACACA
*
46246618 TAGGGGTATTATAGTAATTT
1 TAGGGGTATAATAGTAATTT
46246638 AGCTACTTTT
Statistics
Matches: 41, Mismatches: 5, Indels: 2
0.85 0.10 0.04
Matches are distributed among these distances:
26 19 0.46
28 22 0.54
ACGTcount: A:0.32, C:0.09, G:0.22, T:0.36
Consensus pattern (26 bp):
TAGGGGTATAATAGTAATTTTACACA
Found at i:46246896 original size:16 final size:15
Alignment explanation
Indices: 46246875--46246904 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
46246865 AAAATACCGA
46246875 CTTTTCGGCATTTTGG
1 CTTTTCGGC-TTTTGG
46246891 CTTTTCGGCTTTTG
1 CTTTTCGGCTTTTG
46246905 CCAATCTAGT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.03, C:0.20, G:0.23, T:0.53
Consensus pattern (15 bp):
CTTTTCGGCTTTTGG
Found at i:46248108 original size:26 final size:26
Alignment explanation
Indices: 46248079--46248188 Score: 193
Period size: 26 Copynumber: 4.2 Consensus size: 26
46248069 CATGAAATTC
*
46248079 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGGAACATTTACCTAACCCA
46248105 TTATCATGGAACATTTACCTAACCCA
1 TTATCATGGAACATTTACCTAACCCA
*
46248131 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGGAACATTTACCTAACCCA
*
46248157 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGGAACATTTACCTAACCCA
46248183 TTATCA
1 TTATCA
46248189 ATTTGTATCA
Statistics
Matches: 82, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 82 1.00
ACGTcount: A:0.35, C:0.25, G:0.06, T:0.34
Consensus pattern (26 bp):
TTATCATGGAACATTTACCTAACCCA
Found at i:46249919 original size:22 final size:22
Alignment explanation
Indices: 46249894--46249951 Score: 107
Period size: 22 Copynumber: 2.6 Consensus size: 22
46249884 TGTTTGAGTT
*
46249894 AAATTAAAAAATTGAACATTTC
1 AAATTAAAATATTGAACATTTC
46249916 AAATTAAAATATTGAACATTTC
1 AAATTAAAATATTGAACATTTC
46249938 AAATTAAAATATTG
1 AAATTAAAATATTG
46249952 TTATAGTATA
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
22 35 1.00
ACGTcount: A:0.53, C:0.07, G:0.05, T:0.34
Consensus pattern (22 bp):
AAATTAAAATATTGAACATTTC
Found at i:46250163 original size:43 final size:45
Alignment explanation
Indices: 46250097--46250181 Score: 111
Period size: 43 Copynumber: 1.9 Consensus size: 45
46250087 TATTTTAGAA
* *
46250097 AAATTTTAAAATTTTAACCTTTTTATATAT-TTTTTAATTTTTTT
1 AAATTTTAAAATTTTAACCTTTTTATAAATATTTTGAATTTTTTT
* **
46250141 AAATTTT-AAATTTTGATTTTTTTATAAATATTTTGAATTTT
1 AAATTTTAAAATTTTAACCTTTTTATAAATATTTTGAATTTT
46250182 AAAAATTATT
Statistics
Matches: 35, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
43 18 0.51
44 17 0.49
ACGTcount: A:0.33, C:0.02, G:0.02, T:0.62
Consensus pattern (45 bp):
AAATTTTAAAATTTTAACCTTTTTATAAATATTTTGAATTTTTTT
Found at i:46250181 original size:18 final size:19
Alignment explanation
Indices: 46250160--46250198 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
46250150 ATTTTGATTT
*
46250160 TTTTATAAA-TATTTTGAA
1 TTTTAAAAATTATTTTGAA
46250178 TTTTAAAAATTATTTTGAA
1 TTTTAAAAATTATTTTGAA
46250197 TT
1 TT
46250199 ATTTTGTAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 8 0.42
19 11 0.58
ACGTcount: A:0.38, C:0.00, G:0.05, T:0.56
Consensus pattern (19 bp):
TTTTAAAAATTATTTTGAA
Found at i:46253988 original size:17 final size:18
Alignment explanation
Indices: 46253949--46253994 Score: 51
Period size: 17 Copynumber: 2.7 Consensus size: 18
46253939 GGTATATGCA
* *
46253949 AATGAGTATATTTTCATG
1 AATGAGTATAATTGCATG
*
46253967 GATGAGTA-AATTGCATG
1 AATGAGTATAATTGCATG
46253984 AATGAG-ATAAT
1 AATGAGTATAAT
46253995 GCCTTGTTTG
Statistics
Matches: 23, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
16 1 0.04
17 15 0.65
18 7 0.30
ACGTcount: A:0.39, C:0.04, G:0.22, T:0.35
Consensus pattern (18 bp):
AATGAGTATAATTGCATG
Found at i:46257477 original size:15 final size:16
Alignment explanation
Indices: 46257448--46257486 Score: 53
Period size: 15 Copynumber: 2.5 Consensus size: 16
46257438 AATTGTTTTC
*
46257448 TTTTTCATTTAAATAA
1 TTTTTTATTTAAATAA
46257464 TTTTTTATTT-AATAA
1 TTTTTTATTTAAATAA
*
46257479 CTTTTTAT
1 TTTTTTAT
46257487 CTTTCCAATT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
15 12 0.57
16 9 0.43
ACGTcount: A:0.31, C:0.05, G:0.00, T:0.64
Consensus pattern (16 bp):
TTTTTTATTTAAATAA
Found at i:46259483 original size:53 final size:54
Alignment explanation
Indices: 46259413--46259603 Score: 222
Period size: 55 Copynumber: 3.5 Consensus size: 54
46259403 TTTTGAACTT
* *
46259413 ACCACTGCCATGTCTTGACATGGTCTTACGTGGTATCCTTGCCTTAT-GTACTC
1 ACCAATGCCATGCCTTGACATGGTCTTACGTGGTATCCTTGCCTTATAGTACTC
* * *
46259466 ACCAATGCCATGCCTTGACATGGTCTTACATGGGACCCTTGCCTTATAGTAACTC
1 ACCAATGCCATGCCTTGACATGGTCTTACGTGGTATCCTTGCCTTATAGT-ACTC
* * * * * * * *
46259521 ATCAATGCCATGTCATGACATGGTCTTATGTGATTTCCTTGCCTTATAGAACTT
1 ACCAATGCCATGCCTTGACATGGTCTTACGTGGTATCCTTGCCTTATAGTACTC
* * *
46259575 ATCAATGCCATACCTTGGCATGGTCTTAC
1 ACCAATGCCATGCCTTGACATGGTCTTAC
46259604 ATGATATCTT
Statistics
Matches: 115, Mismatches: 21, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
53 42 0.37
54 29 0.25
55 44 0.38
ACGTcount: A:0.22, C:0.26, G:0.18, T:0.34
Consensus pattern (54 bp):
ACCAATGCCATGCCTTGACATGGTCTTACGTGGTATCCTTGCCTTATAGTACTC
Found at i:46259546 original size:55 final size:55
Alignment explanation
Indices: 46259418--46259606 Score: 226
Period size: 53 Copynumber: 3.5 Consensus size: 55
46259408 AACTTACCAC
* * * *
46259418 TGCCATGTCTTGACATGGTCTTACGTGGTATCCTTGCCTTAT-GT-ACTCACCAA
1 TGCCATGCCTTGACATGGTCTTACATGGGATCCTTGCCTTATAGTAACTCATCAA
*
46259471 TGCCATGCCTTGACATGGTCTTACATGGGACCCTTGCCTTATAGTAACTCATCAA
1 TGCCATGCCTTGACATGGTCTTACATGGGATCCTTGCCTTATAGTAACTCATCAA
* * * *
46259526 TGCCATGTCATGACATGGTCTT--ATGTGATTTCCTTGCCTTATAG-AACTTATCAA
1 TGCCATGCCTTGACATGGTCTTACATGGGA--TCCTTGCCTTATAGTAACTCATCAA
* *
46259580 TGCCATACCTTGGCATGGTCTTACATG
1 TGCCATGCCTTGACATGGTCTTACATG
46259607 ATATCTTTGT
Statistics
Matches: 116, Mismatches: 14, Indels: 9
0.83 0.10 0.06
Matches are distributed among these distances:
53 43 0.37
54 29 0.25
55 41 0.35
56 3 0.03
ACGTcount: A:0.22, C:0.25, G:0.19, T:0.35
Consensus pattern (55 bp):
TGCCATGCCTTGACATGGTCTTACATGGGATCCTTGCCTTATAGTAACTCATCAA
Found at i:46263224 original size:28 final size:27
Alignment explanation
Indices: 46263161--46263312 Score: 241
Period size: 27 Copynumber: 5.6 Consensus size: 27
46263151 ATATTAAGTC
* *
46263161 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
46263188 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
*
46263216 CGCACACTTAGTGCTACATAGTCAACT
1 CGCACACTTAGTGCTACATAATCAACT
*
46263243 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
*
46263271 CGCACACTTAGTGCTACATAATCAATT
1 CGCACACTTAGTGCTACATAATCAACT
46263298 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
46263313 GCACAATTTA
Statistics
Matches: 118, Mismatches: 5, Indels: 4
0.93 0.04 0.03
Matches are distributed among these distances:
27 66 0.56
28 52 0.44
ACGTcount: A:0.32, C:0.29, G:0.13, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:46263245 original size:55 final size:55
Alignment explanation
Indices: 46263161--46263312 Score: 259
Period size: 55 Copynumber: 2.8 Consensus size: 55
46263151 ATATTAAGTC
* *
46263161 CGCACACTCAGTGCTATATAATCAACTCGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCTACATAATCAAACT
* *
46263216 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCTACATAATCAAACT
*
46263271 CGCACACTTAGTGCTACATAATCAATTCGCACACTTAGTGCT
1 CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCT
46263313 GCACAATTTA
Statistics
Matches: 91, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
55 91 1.00
ACGTcount: A:0.32, C:0.29, G:0.13, T:0.26
Consensus pattern (55 bp):
CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCTACATAATCAAACT
Found at i:46267997 original size:48 final size:48
Alignment explanation
Indices: 46267930--46268075 Score: 168
Period size: 48 Copynumber: 3.0 Consensus size: 48
46267920 CTGGGCTATC
* * *
46267930 GGCATCGATATGTGATCCCATGTAAGACCATATCATGGACATGGCATT
1 GGCATCGACATGCGATCCCATGTAAGACCATATCTTGGACATGGCATT
* * *
46267978 GGCATCGACCTGCGTTCCCATGTAAGACCATGT-TTGGGACATGGCATT
1 GGCATCGACATGCGATCCCATGTAAGACCATATCTT-GGACATGGCATT
* * * * * *
46268026 AGCATCGATATGTGATCCCATATAAGACCATATCTTAGATATGGCATT
1 GGCATCGACATGCGATCCCATGTAAGACCATATCTTGGACATGGCATT
46268074 GG
1 GG
46268076 AATCCTATCA
Statistics
Matches: 80, Mismatches: 16, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
47 1 0.01
48 77 0.96
49 2 0.03
ACGTcount: A:0.27, C:0.21, G:0.23, T:0.28
Consensus pattern (48 bp):
GGCATCGACATGCGATCCCATGTAAGACCATATCTTGGACATGGCATT
Found at i:46273544 original size:16 final size:16
Alignment explanation
Indices: 46273523--46273556 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
46273513 CCTTGTTCAA
46273523 TAAAAAAAATAATACT
1 TAAAAAAAATAATACT
* *
46273539 TAAAAAATATAATGCT
1 TAAAAAAAATAATACT
46273555 TA
1 TA
46273557 TGATAATTTT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.62, C:0.06, G:0.03, T:0.29
Consensus pattern (16 bp):
TAAAAAAAATAATACT
Found at i:46276236 original size:70 final size:70
Alignment explanation
Indices: 46276146--46276285 Score: 253
Period size: 70 Copynumber: 2.0 Consensus size: 70
46276136 AAGTATAGGG
*
46276146 GTAAAATAGTAATTTTACCCAAGTATAAATTTTGGGTCATTTTGAGTAATATATGTATTAAACGA
1 GTAAAATAGTAATTTTACCCAAGTATAAATTTTGGGTCATTTTGAGTAATATATGTATTAAACAA
46276211 GCTAA
66 GCTAA
* *
46276216 GTAAAATAGTAATTTTACCCAAGTATGAATTTTGGGTCATTTTGAGTAATGTATGTATTAAACAA
1 GTAAAATAGTAATTTTACCCAAGTATAAATTTTGGGTCATTTTGAGTAATATATGTATTAAACAA
46276281 GCTAA
66 GCTAA
46276286 ATTTGGTATT
Statistics
Matches: 67, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
70 67 1.00
ACGTcount: A:0.38, C:0.09, G:0.16, T:0.37
Consensus pattern (70 bp):
GTAAAATAGTAATTTTACCCAAGTATAAATTTTGGGTCATTTTGAGTAATATATGTATTAAACAA
GCTAA
Found at i:46279854 original size:16 final size:15
Alignment explanation
Indices: 46279829--46279858 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
46279819 CTAGATCGGC
46279829 AAAAGCCGAAAAGCA
1 AAAAGCCGAAAAGCA
46279844 AAAATGCCGAAAAGC
1 AAAA-GCCGAAAAGC
46279859 CGGTATTTTG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 4 0.29
16 10 0.71
ACGTcount: A:0.57, C:0.20, G:0.20, T:0.03
Consensus pattern (15 bp):
AAAAGCCGAAAAGCA
Found at i:46280147 original size:28 final size:28
Alignment explanation
Indices: 46280107--46280171 Score: 112
Period size: 28 Copynumber: 2.3 Consensus size: 28
46280097 ATGTACTAGA
*
46280107 ATACCCCTATGTATGCAAAATTACCATT
1 ATACCCCTATGTATGCAAAATGACCATT
*
46280135 ATACCCCTATGTATGCAAAATGACCTTT
1 ATACCCCTATGTATGCAAAATGACCATT
46280163 ATACCCCTA
1 ATACCCCTA
46280172 GGGTTAATTT
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
28 35 1.00
ACGTcount: A:0.34, C:0.28, G:0.08, T:0.31
Consensus pattern (28 bp):
ATACCCCTATGTATGCAAAATGACCATT
Found at i:46280335 original size:27 final size:27
Alignment explanation
Indices: 46280277--46280366 Score: 119
Period size: 28 Copynumber: 3.2 Consensus size: 27
46280267 AGGAAGCGTC
46280277 CTGGTGGCTA-TGCCACAAATTATCTGTT
1 CTGGTGGC-ACTGCCACAAA-TATCTGTT
* *
46280305 CTGGTGGCCCTGCCACATATATCTGTT
1 CTGGTGGCACTGCCACAAATATCTGTT
46280332 CTGGTGGCACTGCCACAAAATATCTGTAT
1 CTGGTGGCACTGCCAC-AAATATCTGT-T
46280361 CTGGTG
1 CTGGTG
46280367 ACTCTATCAC
Statistics
Matches: 55, Mismatches: 4, Indels: 5
0.86 0.06 0.08
Matches are distributed among these distances:
27 23 0.42
28 25 0.45
29 7 0.13
ACGTcount: A:0.20, C:0.24, G:0.23, T:0.32
Consensus pattern (27 bp):
CTGGTGGCACTGCCACAAATATCTGTT
Found at i:46280377 original size:29 final size:28
Alignment explanation
Indices: 46280289--46280377 Score: 81
Period size: 27 Copynumber: 3.2 Consensus size: 28
46280279 GGTGGCTATG
* * * *
46280289 CCACAAATTATCTGTTCTGGTGGCCCTG
1 CCACAAAATATCTGTTCTGGTGACACTA
* * *
46280317 CCAC-ATATATCTGTTCTGGTGGCACTG
1 CCACAAAATATCTGTTCTGGTGACACTA
*
46280344 CCACAAAATATCTGTATCTGGTGACTCTA
1 CCACAAAATATCTGT-TCTGGTGACACTA
*
46280373 TCACA
1 CCACA
46280378 TTTTCTGTAT
Statistics
Matches: 51, Mismatches: 8, Indels: 3
0.82 0.13 0.05
Matches are distributed among these distances:
27 24 0.47
28 13 0.25
29 14 0.27
ACGTcount: A:0.24, C:0.27, G:0.18, T:0.31
Consensus pattern (28 bp):
CCACAAAATATCTGTTCTGGTGACACTA
Found at i:46280385 original size:55 final size:56
Alignment explanation
Indices: 46280277--46280391 Score: 137
Period size: 55 Copynumber: 2.1 Consensus size: 56
46280267 AGGAAGCGTC
* * *
46280277 CTGGTGGCTATGCCACAAATTATCTGTTCTGGTGGCCCTGCCACATATATCTGT-T
1 CTGGTGGCTATGCCACAAAATATCTGTTCTGGTGACCCTACCACATATATCTGTAT
* * *
46280332 CTGGTGGC-ACTGCCACAAAATATCTGTATCTGGTGACTCTATCACAT-TTTCTGTAT
1 CTGGTGGCTA-TGCCACAAAATATCTGT-TCTGGTGACCCTACCACATATATCTGTAT
46280388 CTGG
1 CTGG
46280392 CAGCCATGCT
Statistics
Matches: 51, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
54 1 0.02
55 30 0.59
56 20 0.39
ACGTcount: A:0.20, C:0.24, G:0.21, T:0.35
Consensus pattern (56 bp):
CTGGTGGCTATGCCACAAAATATCTGTTCTGGTGACCCTACCACATATATCTGTAT
Found at i:46283665 original size:15 final size:17
Alignment explanation
Indices: 46283645--46283676 Score: 50
Period size: 15 Copynumber: 2.0 Consensus size: 17
46283635 TAGCATGTTC
46283645 TACCAAA-TCA-ATTCA
1 TACCAAACTCACATTCA
46283660 TACCAAACTCACATTCA
1 TACCAAACTCACATTCA
46283677 CAAGTGTCAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
15 7 0.47
16 3 0.20
17 5 0.33
ACGTcount: A:0.44, C:0.31, G:0.00, T:0.25
Consensus pattern (17 bp):
TACCAAACTCACATTCA
Found at i:46287144 original size:14 final size:15
Alignment explanation
Indices: 46287112--46287158 Score: 51
Period size: 15 Copynumber: 3.2 Consensus size: 15
46287102 CCAAACATTA
* * *
46287112 AAATTAAAACACAAA
1 AAATTAACACATAAT
46287127 AAATTAACACAT-AT
1 AAATTAACACATAAT
*
46287141 AAATTCACACATAAT
1 AAATTAACACATAAT
46287156 AAA
1 AAA
46287159 CACAGAAAAT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
14 12 0.44
15 15 0.56
ACGTcount: A:0.64, C:0.15, G:0.00, T:0.21
Consensus pattern (15 bp):
AAATTAACACATAAT
Found at i:46288336 original size:12 final size:12
Alignment explanation
Indices: 46288306--46288339 Score: 52
Period size: 11 Copynumber: 2.9 Consensus size: 12
46288296 ATCATGTTAC
*
46288306 AACATTAACAAA
1 AACATTAAAAAA
46288318 AAC-TTAAAAAA
1 AACATTAAAAAA
46288329 AACATTAAAAA
1 AACATTAAAAA
46288340 CAAGACAAAG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
11 10 0.50
12 10 0.50
ACGTcount: A:0.71, C:0.12, G:0.00, T:0.18
Consensus pattern (12 bp):
AACATTAAAAAA
Found at i:46294916 original size:16 final size:17
Alignment explanation
Indices: 46294895--46294928 Score: 52
Period size: 16 Copynumber: 2.0 Consensus size: 17
46294885 TTACCATGCA
46294895 TATAACAT-TTAAATGT
1 TATAACATATTAAATGT
46294911 TATAACATAATTAAATGT
1 TATAACAT-ATTAAATGT
46294929 AAATTTACCA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 8 0.50
18 8 0.50
ACGTcount: A:0.47, C:0.06, G:0.06, T:0.41
Consensus pattern (17 bp):
TATAACATATTAAATGT
Found at i:46296918 original size:25 final size:25
Alignment explanation
Indices: 46296859--46296919 Score: 61
Period size: 25 Copynumber: 2.4 Consensus size: 25
46296849 GTACATATAT
* * *
46296859 GCACATACAAGCTATGAATTGGTAT
1 GCACATACGAGCTATAAATTGGTAA
* *
46296884 GCTC-TCACGAGCTGTAAATTGGTAA
1 GCACAT-ACGAGCTATAAATTGGTAA
46296909 GCACATACGAG
1 GCACATACGAG
46296920 ATGAGAATCA
Statistics
Matches: 28, Mismatches: 6, Indels: 4
0.74 0.16 0.11
Matches are distributed among these distances:
24 1 0.04
25 26 0.93
26 1 0.04
ACGTcount: A:0.33, C:0.20, G:0.23, T:0.25
Consensus pattern (25 bp):
GCACATACGAGCTATAAATTGGTAA
Found at i:46296985 original size:25 final size:25
Alignment explanation
Indices: 46296874--46296993 Score: 79
Period size: 25 Copynumber: 4.8 Consensus size: 25
46296864 TACAAGCTAT
*
46296874 GAATTGGTATGCTCTCACGAGCTGTA
1 GAATTGGTAAGCTCTCACGAGCT-TA
* * *
46296900 -AATTGGTAAGCACAT-ACGAGATGA
1 GAATTGGTAAGCTC-TCACGAGCTTA
** *
46296924 GAATCAGTAAGCTCTCATGAGC-T-
1 GAATTGGTAAGCTCTCACGAGCTTA
* *
46296947 GCTATCGGTAAGCTCAT-ACGAGCTTA
1 G-AATTGGTAAGCTC-TCACGAGCTTA
*
46296973 GAATTGGTAAGCTTTCACGAG
1 GAATTGGTAAGCTCTCACGAG
46296994 TTGCAATTAG
Statistics
Matches: 70, Mismatches: 16, Indels: 17
0.68 0.16 0.17
Matches are distributed among these distances:
23 1 0.01
24 19 0.27
25 48 0.69
26 2 0.03
ACGTcount: A:0.30, C:0.18, G:0.25, T:0.27
Consensus pattern (25 bp):
GAATTGGTAAGCTCTCACGAGCTTA
Found at i:46300324 original size:32 final size:32
Alignment explanation
Indices: 46300283--46300346 Score: 128
Period size: 32 Copynumber: 2.0 Consensus size: 32
46300273 AACTCTGATG
46300283 CCTTTAGGCGATATTATATGTCCCAAAAAACT
1 CCTTTAGGCGATATTATATGTCCCAAAAAACT
46300315 CCTTTAGGCGATATTATATGTCCCAAAAAACT
1 CCTTTAGGCGATATTATATGTCCCAAAAAACT
46300347 GACTTCTCGA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.34, C:0.22, G:0.12, T:0.31
Consensus pattern (32 bp):
CCTTTAGGCGATATTATATGTCCCAAAAAACT
Found at i:46307685 original size:27 final size:27
Alignment explanation
Indices: 46307652--46307795 Score: 171
Period size: 27 Copynumber: 5.3 Consensus size: 27
46307642 TACTGAAATG
*
46307652 CCCTCGATTTGTAAAATTACCATTTTA
1 CCCTCGATTTATAAAATTACCATTTTA
* * * *
46307679 CCTTCGATTTATAGAATTACCGTTTCA
1 CCCTCGATTTATAAAATTACCATTTTA
* * **
46307706 CCATCGATTTAAAAAATTAATATTTTA
1 CCCTCGATTTATAAAATTACCATTTTA
*
46307733 CCCTCGATTTACAAAATTACCATTTTA
1 CCCTCGATTTATAAAATTACCATTTTA
* * *
46307760 CCCTCAATTTACAAAATTACCTTTTTA
1 CCCTCGATTTATAAAATTACCATTTTA
46307787 CCCTCGATT
1 CCCTCGATT
46307796 GTGAAATTAC
Statistics
Matches: 98, Mismatches: 19, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 98 1.00
ACGTcount: A:0.32, C:0.23, G:0.06, T:0.40
Consensus pattern (27 bp):
CCCTCGATTTATAAAATTACCATTTTA
Found at i:46307868 original size:54 final size:54
Alignment explanation
Indices: 46307794--46307949 Score: 163
Period size: 54 Copynumber: 2.9 Consensus size: 54
46307784 TTACCCTCGA
* * **
46307794 TTGTGAAATTACTGAAATACCCCT-GTAGGATAGAATTACCAAAATACCCCTAGT
1 TTGTGAAATTACCGAAATACCCCTAGTAGG-TAAAATTACCAAAATACCAATAGT
* * ** * *
46307848 TTGTAAAATTACCAAAATACCCCTAGTTTGTAAAATTACCGAAATACCAATGGT
1 TTGTGAAATTACCGAAATACCCCTAGTAGGTAAAATTACCAAAATACCAATAGT
* **
46307902 TTGTGAAATTACCGAAATA-CCCTCAATTTGTAAAATTACCAAAATACC
1 TTGTGAAATTACCGAAATACCCCT-AGTAGGTAAAATTACCAAAATACC
46307950 TTTGATTTAC
Statistics
Matches: 86, Mismatches: 14, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
53 4 0.05
54 79 0.92
55 3 0.03
ACGTcount: A:0.40, C:0.20, G:0.12, T:0.29
Consensus pattern (54 bp):
TTGTGAAATTACCGAAATACCCCTAGTAGGTAAAATTACCAAAATACCAATAGT
Found at i:46307957 original size:27 final size:27
Alignment explanation
Indices: 46307827--46308063 Score: 174
Period size: 27 Copynumber: 8.7 Consensus size: 27
46307817 TGTAGGATAG
*
46307827 AATTACCAAAATACCCCT-AGTTTGTAA
1 AATTACCAAAATACCCTTGA-TTTGTAA
*
46307854 AATTACCAAAATACCCCT-AGTTTGTAA
1 AATTACCAAAATACCCTTGA-TTTGTAA
* ** * *
46307881 AATTACCGAAATACCAATGGTTTGTGA
1 AATTACCAAAATACCCTTGATTTGTAA
* **
46307908 AATTACCGAAATACCCTCAATTTGTAA
1 AATTACCAAAATACCCTTGATTTGTAA
* **
46307935 AATTACCAAAATACCTTTGATTTACAA
1 AATTACCAAAATACCCTTGATTTGTAA
* *
46307962 AATTA-TAGAAATACCCTTGACTTTCTAAA
1 AATTACCA-AAATACCCTTGA-TTTGT-AA
** * **
46307991 AATTATAAAAATACCATTGATTTACAA
1 AATTACCAAAATACCCTTGATTTGTAA
** * *
46308018 AATTACTGAAATACCCTTGGTTTGTAG
1 AATTACCAAAATACCCTTGATTTGTAA
* *
46308045 ATTTACCAAAACACCCTTG
1 AATTACCAAAATACCCTTG
46308064 TAGGATGAAA
Statistics
Matches: 168, Mismatches: 37, Indels: 10
0.78 0.17 0.05
Matches are distributed among these distances:
26 1 0.01
27 142 0.85
28 6 0.04
29 18 0.11
30 1 0.01
ACGTcount: A:0.41, C:0.19, G:0.09, T:0.32
Consensus pattern (27 bp):
AATTACCAAAATACCCTTGATTTGTAA
Found at i:46307964 original size:81 final size:81
Alignment explanation
Indices: 46307827--46307976 Score: 196
Period size: 81 Copynumber: 1.9 Consensus size: 81
46307817 TGTAGGATAG
* ** *
46307827 AATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCCTAGTTTGTAAAATTACCGAAA
1 AATTACCAAAATACCCCTAATTTGTAAAATTACCAAAATACCCCTAGTTTACAAAATTACAGAAA
46307892 TACCAATGGTTTGTGA
66 TACCAATGGTTTGTGA
* * * *
46307908 AATTACCGAAATA-CCCTCAATTTGTAAAATTACCAAAATA-CCTTTGATTTACAAAATTATAGA
1 AATTACCAAAATACCCCT-AATTTGTAAAATTACCAAAATACCCCTAG-TTTACAAAATTACAGA
46307971 AATACC
64 AATACC
46307977 CTTGACTTTC
Statistics
Matches: 59, Mismatches: 8, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
80 8 0.14
81 51 0.86
ACGTcount: A:0.42, C:0.19, G:0.09, T:0.30
Consensus pattern (81 bp):
AATTACCAAAATACCCCTAATTTGTAAAATTACCAAAATACCCCTAGTTTACAAAATTACAGAAA
TACCAATGGTTTGTGA
Found at i:46309037 original size:24 final size:25
Alignment explanation
Indices: 46308955--46309048 Score: 145
Period size: 25 Copynumber: 3.8 Consensus size: 25
46308945 AGGAAGTGCT
* *
46308955 AAAAGGGCTATGCCCTAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTACCG
*
46308980 AAAAGGGCTTTGCCCTAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTACCG
*
46309005 AAAAGGGCTTTGCCCCAGTTTATC-
1 AAAAGGGCTTTGCCCCAGTTTACCG
46309029 AAAAGGGCTTTGCCCCAGTT
1 AAAAGGGCTTTGCCCCAGTT
46309049 ATTAAAAGAG
Statistics
Matches: 66, Mismatches: 3, Indels: 1
0.94 0.04 0.01
Matches are distributed among these distances:
24 20 0.30
25 46 0.70
ACGTcount: A:0.26, C:0.24, G:0.23, T:0.27
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTACCG
Found at i:46309061 original size:24 final size:24
Alignment explanation
Indices: 46308955--46309061 Score: 126
Period size: 25 Copynumber: 4.4 Consensus size: 24
46308945 AGGAAGTGCT
* * *
46308955 AAAAGGGCTATGCCCTAGTTTACC
1 AAAAGGGCTTTGCCCCAGTTTATC
* *
46308979 GAAAAGGGCTTTGCCCTAGTTTACC
1 -AAAAGGGCTTTGCCCCAGTTTATC
46309004 GAAAAGGGCTTTGCCCCAGTTTATC
1 -AAAAGGGCTTTGCCCCAGTTTATC
*
46309029 AAAAGGGCTTTGCCCCAG-TTATT
1 AAAAGGGCTTTGCCCCAGTTTATC
46309052 AAAAGAGGCT
1 AAAAG-GGCT
46309062 AGGCCTCCAG
Statistics
Matches: 77, Mismatches: 4, Indels: 3
0.92 0.05 0.04
Matches are distributed among these distances:
23 9 0.12
24 22 0.29
25 46 0.60
ACGTcount: A:0.28, C:0.22, G:0.23, T:0.26
Consensus pattern (24 bp):
AAAAGGGCTTTGCCCCAGTTTATC
Found at i:46309302 original size:31 final size:31
Alignment explanation
Indices: 46309267--46309407 Score: 237
Period size: 31 Copynumber: 4.5 Consensus size: 31
46309257 TGTTTACAGT
46309267 AAAGGCTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
* * *
46309298 AAAGGTTTTGGCCCAGAGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
*
46309329 TAAGGCTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
*
46309360 TAAGGCTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
46309391 AAAGGCTTCGGCCCAGT
1 AAAGGCTTCGGCCCAGT
46309408 AACTGTTAAA
Statistics
Matches: 102, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 102 1.00
ACGTcount: A:0.28, C:0.16, G:0.26, T:0.30
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGATTTATGA
Done.