Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A06
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 115140250
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2234201 characters in sequence are not A, C, G, or T
File 140 of 345
Found at i:47277666 original size:39 final size:39
Alignment explanation
Indices: 47277607--47277839 Score: 376
Period size: 39 Copynumber: 6.0 Consensus size: 39
47277597 AAGACACTGA
47277607 AAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGG
1 AAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGG
* * *
47277646 AAATATATCCGGGCTAAAGTCTCGCAGGTTTCGTGCTGG
1 AAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGG
* *
47277685 AAATATATCCGGGCCAAAGTCCCGCAGGCTTCGTGCTGG
1 AAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGG
* *
47277724 AAATGTATCCGGACTTAAGTCCCGCAGGCTTCGTGCTGG
1 AAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGG
*
47277763 AAATGTATCCGGGCCAAAGTCCCGCAGGCTTCGTGCTGG
1 AAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGG
* *
47277802 AAATGTATCCGGGTTAAAGTCCCGCAGGCTTTGTGCTG
1 AAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTG
47277840 ATAATATAAT
Statistics
Matches: 178, Mismatches: 16, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 178 1.00
ACGTcount: A:0.21, C:0.25, G:0.29, T:0.24
Consensus pattern (39 bp):
AAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGG
Found at i:47278063 original size:12 final size:12
Alignment explanation
Indices: 47278046--47278072 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
47278036 ATAAGTGTTA
47278046 TGACTATAAATG
1 TGACTATAAATG
47278058 TGACTATAAATG
1 TGACTATAAATG
47278070 TGA
1 TGA
47278073 TTGTGATATA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.41, C:0.07, G:0.19, T:0.33
Consensus pattern (12 bp):
TGACTATAAATG
Found at i:47289709 original size:34 final size:35
Alignment explanation
Indices: 47289647--47289725 Score: 115
Period size: 34 Copynumber: 2.3 Consensus size: 35
47289637 CCCATCTCAG
*
47289647 TACAGTATCAAATATACAGTAGGGCCTTAGCCCAT
1 TACAGTATCAAATACACAGTAGGGCCTTAGCCCAT
* *
47289682 TACAGTATCAGA-ACACATTAGGGCCTTAGCCCAT
1 TACAGTATCAAATACACAGTAGGGCCTTAGCCCAT
*
47289716 CACAGTATCA
1 TACAGTATCA
47289726 TTAACATTCA
Statistics
Matches: 40, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
34 29 0.73
35 11 0.28
ACGTcount: A:0.34, C:0.25, G:0.16, T:0.24
Consensus pattern (35 bp):
TACAGTATCAAATACACAGTAGGGCCTTAGCCCAT
Found at i:47291831 original size:9 final size:8
Alignment explanation
Indices: 47291797--47291828 Score: 64
Period size: 8 Copynumber: 4.0 Consensus size: 8
47291787 GTATATTCGT
47291797 TTGTAAAA
1 TTGTAAAA
47291805 TTGTAAAA
1 TTGTAAAA
47291813 TTGTAAAA
1 TTGTAAAA
47291821 TTGTAAAA
1 TTGTAAAA
47291829 ATTTTAAATA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.12, T:0.38
Consensus pattern (8 bp):
TTGTAAAA
Found at i:47291836 original size:9 final size:9
Alignment explanation
Indices: 47291797--47291836 Score: 50
Period size: 8 Copynumber: 4.8 Consensus size: 9
47291787 GTATATTCGT
47291797 TTGT-AAAA
1 TTGTAAAAA
47291805 TTGT-AAAA
1 TTGTAAAAA
47291813 TTGT-AAAA
1 TTGTAAAAA
47291821 TTGTAAAAA
1 TTGTAAAAA
*
47291830 TTTTAAA
1 TTGTAAA
47291837 TAGACTGATT
Statistics
Matches: 30, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
8 20 0.67
9 10 0.33
ACGTcount: A:0.50, C:0.00, G:0.10, T:0.40
Consensus pattern (9 bp):
TTGTAAAAA
Found at i:47294548 original size:33 final size:33
Alignment explanation
Indices: 47294511--47294575 Score: 85
Period size: 33 Copynumber: 2.0 Consensus size: 33
47294501 ACAATAATGC
* * * *
47294511 AGATAAATTGCCAATATCTGCAAACAATCTACA
1 AGATAAACTACCAATATATGCAAACAAGCTACA
*
47294544 AGATAAACTACCAATATATGCAGACAAGCTAC
1 AGATAAACTACCAATATATGCAAACAAGCTAC
47294576 TAGTAACTAT
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
33 27 1.00
ACGTcount: A:0.46, C:0.22, G:0.11, T:0.22
Consensus pattern (33 bp):
AGATAAACTACCAATATATGCAAACAAGCTACA
Found at i:47295697 original size:20 final size:20
Alignment explanation
Indices: 47295663--47295700 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
47295653 GACTAAACCG
**
47295663 AAAACTTAGGGAATTTTTAC
1 AAAACTTAGAAAATTTTTAC
47295683 AAAACTTAGAAAATTTTT
1 AAAACTTAGAAAATTTTT
47295701 GCTATGTAAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.45, C:0.08, G:0.11, T:0.37
Consensus pattern (20 bp):
AAAACTTAGAAAATTTTTAC
Found at i:47309597 original size:16 final size:16
Alignment explanation
Indices: 47309576--47309609 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
47309566 AGATGAGCAA
47309576 TGATTTAAGTTTGGGG
1 TGATTTAAGTTTGGGG
47309592 TGATTTAAGTTTGGGG
1 TGATTTAAGTTTGGGG
47309608 TG
1 TG
47309610 TGTAGACTGA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.18, C:0.00, G:0.38, T:0.44
Consensus pattern (16 bp):
TGATTTAAGTTTGGGG
Found at i:47320445 original size:22 final size:22
Alignment explanation
Indices: 47320393--47320457 Score: 78
Period size: 22 Copynumber: 3.0 Consensus size: 22
47320383 TTAAAGCCTT
* *
47320393 CTGATTATGGCTTTGTGTCAAC
1 CTGATTATGGCTCTGTGCCAAC
*
47320415 CT-ACATATGGCTCTGTGCCAAC
1 CTGA-TTATGGCTCTGTGCCAAC
*
47320437 CTGATTATGGCTGTGTGCCAA
1 CTGATTATGGCTCTGTGCCAA
47320458 ACGTATTTGC
Statistics
Matches: 36, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
21 1 0.03
22 34 0.94
23 1 0.03
ACGTcount: A:0.20, C:0.23, G:0.23, T:0.34
Consensus pattern (22 bp):
CTGATTATGGCTCTGTGCCAAC
Found at i:47320646 original size:27 final size:27
Alignment explanation
Indices: 47320616--47320717 Score: 134
Period size: 27 Copynumber: 3.8 Consensus size: 27
47320606 ATTTTGTTAA
* *
47320616 GTGGCTTTGCCACATTATCTGTTTCTG
1 GTGGCTCTGCCACAATATCTGTTTCTG
*
47320643 GTGGCTATGCCACAAATATCTG-TTCTG
1 GTGGCTCTGCCAC-AATATCTGTTTCTG
*
47320670 GTGGCTCTGCCACAATATCTGTATCTG
1 GTGGCTCTGCCACAATATCTGTTTCTG
* *
47320697 GTGACTCTGTCACAATATCTG
1 GTGGCTCTGCCACAATATCTG
47320718 ATAACTGAGC
Statistics
Matches: 67, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
26 8 0.12
27 52 0.78
28 7 0.10
ACGTcount: A:0.19, C:0.24, G:0.22, T:0.36
Consensus pattern (27 bp):
GTGGCTCTGCCACAATATCTGTTTCTG
Found at i:47320892 original size:6 final size:6
Alignment explanation
Indices: 47320854--47320973 Score: 68
Period size: 6 Copynumber: 19.3 Consensus size: 6
47320844 TTGCATTCAC
* * *
47320854 ATTCTG ATTTTTG ATTCTG -TTACCTG ATACTG ATTCTG ATTTTG ATTCTG
1 ATTCTG A-TTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG
* * * * *
47320904 -TTACCTG ATACTA ATTCTG ATTCTG ATTCTG -TCACCTA ATTCTG ATTCTT
1 ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG
47320954 ATTCTG ATTCT- AGTTCTG AT
1 ATTCTG ATTCTG A-TTCTG AT
47320974 AATGTTTCTT
Statistics
Matches: 86, Mismatches: 16, Indels: 24
0.68 0.13 0.19
Matches are distributed among these distances:
5 6 0.07
6 63 0.73
7 14 0.16
8 3 0.03
ACGTcount: A:0.20, C:0.17, G:0.13, T:0.49
Consensus pattern (6 bp):
ATTCTG
Found at i:47320900 original size:31 final size:31
Alignment explanation
Indices: 47320854--47320989 Score: 150
Period size: 31 Copynumber: 4.4 Consensus size: 31
47320844 TTGCATTCAC
*
47320854 ATTCTGATTTTTGATTCTGTTACCTGATACTG
1 ATTCTGA-TTCTGATTCTGTTACCTGATACTG
* *
47320886 ATTCTGATTTTGATTCTGTTACCTGATACTA
1 ATTCTGATTCTGATTCTGTTACCTGATACTG
* * *
47320917 ATTCTGATTCTGATTCTGTCACCTAATTCTG
1 ATTCTGATTCTGATTCTGTTACCTGATACTG
* *
47320948 ATTCTTATTCTGATTCTAGTT--CTGATAATG
1 ATTCTGATTCTGATTCT-GTTACCTGATACTG
* *
47320978 TTTCTTATTCTG
1 ATTCTGATTCTG
47320990 GAATGGGTTA
Statistics
Matches: 91, Mismatches: 12, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
30 17 0.19
31 65 0.71
32 9 0.10
ACGTcount: A:0.20, C:0.17, G:0.13, T:0.50
Consensus pattern (31 bp):
ATTCTGATTCTGATTCTGTTACCTGATACTG
Found at i:47324732 original size:13 final size:13
Alignment explanation
Indices: 47324714--47324741 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
47324704 TCGTATTGTT
47324714 ATCCCTGTTTAGA
1 ATCCCTGTTTAGA
47324727 ATCCCTGTTTAGA
1 ATCCCTGTTTAGA
47324740 AT
1 AT
47324742 ACTTTAGTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.25, C:0.21, G:0.14, T:0.39
Consensus pattern (13 bp):
ATCCCTGTTTAGA
Found at i:47324813 original size:27 final size:27
Alignment explanation
Indices: 47324769--47324842 Score: 67
Period size: 27 Copynumber: 2.7 Consensus size: 27
47324759 TTCAGAAATG
* * *
47324769 CCCTCGACTTGTAAAATTACCAAAGTA
1 CCCTCGATTTATAGAATTACCAAAGTA
* ***
47324796 CCCTCGATTTATAGAATTACTATTTTA
1 CCCTCGATTTATAGAATTACCAAAGTA
* *
47324823 CCCTTGATTTACAGAATTAC
1 CCCTCGATTTATAGAATTAC
47324843 TGTTTTACCC
Statistics
Matches: 38, Mismatches: 9, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
27 38 1.00
ACGTcount: A:0.32, C:0.23, G:0.09, T:0.35
Consensus pattern (27 bp):
CCCTCGATTTATAGAATTACCAAAGTA
Found at i:47324843 original size:27 final size:27
Alignment explanation
Indices: 47324794--47324858 Score: 103
Period size: 27 Copynumber: 2.4 Consensus size: 27
47324784 ATTACCAAAG
*
47324794 TACCCTCGATTTATAGAATTACTATTT
1 TACCCTCGATTTACAGAATTACTATTT
* *
47324821 TACCCTTGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACTATTT
47324848 TACCCTCGATT
1 TACCCTCGATT
47324859 GTGAAATTAC
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 34 1.00
ACGTcount: A:0.26, C:0.22, G:0.09, T:0.43
Consensus pattern (27 bp):
TACCCTCGATTTACAGAATTACTATTT
Found at i:47324880 original size:27 final size:26
Alignment explanation
Indices: 47324850--47324992 Score: 92
Period size: 27 Copynumber: 5.3 Consensus size: 26
47324840 TACTGTTTTA
**
47324850 CCCTCGATTGTGAAATTACTGAAATAC
1 CCCT-GATTGTGAAATTACCAAAATAC
* * *
47324877 CCCT-ATAGGGTAGAATTATCAAAATAC
1 CCCTGATTGTG-A-AATTACCAAAATAC
* * *
47324904 CCTTAGTTTGTAAAATTACCAAAATAC
1 CCCT-GATTGTGAAATTACCAAAATAC
* * *
47324931 CACTGGTTTGTGAAATTACCGAAATA-
1 CCCT-GATTGTGAAATTACCAAAATAC
* *
47324957 CCCTCAATTTGTAAAATTACCAAAATAC
1 CCCT-GA-TTGTGAAATTACCAAAATAC
47324985 CCCTGATT
1 CCCTGATT
47324993 TACAAAATTA
Statistics
Matches: 87, Mismatches: 23, Indels: 13
0.71 0.19 0.11
Matches are distributed among these distances:
25 4 0.05
26 6 0.07
27 70 0.80
28 5 0.06
29 2 0.02
ACGTcount: A:0.37, C:0.21, G:0.12, T:0.30
Consensus pattern (26 bp):
CCCTGATTGTGAAATTACCAAAATAC
Found at i:47324931 original size:54 final size:54
Alignment explanation
Indices: 47324848--47324991 Score: 141
Period size: 54 Copynumber: 2.7 Consensus size: 54
47324838 ATTACTGTTT
* * ** *
47324848 TACCCTCGA-TTGTGAAATTACTGAAATACCCCT-ATAGGGT-AGAATTATCAAAA
1 TACCCTCAATTTGTAAAATTACCAAAATACCCCTGAT-GGGTGA-AATTACCAAAA
* * * * ** *
47324901 TACCCTTAGTTTGTAAAATTACCAAAATACCACTGGTTTGTGAAATTACCGAAA
1 TACCCTCAATTTGTAAAATTACCAAAATACCCCTGATGGGTGAAATTACCAAAA
47324955 TACCCTCAATTTGTAAAATTACCAAAATACCCCTGAT
1 TACCCTCAATTTGTAAAATTACCAAAATACCCCTGAT
47324992 TTACAAAATT
Statistics
Matches: 72, Mismatches: 16, Indels: 5
0.77 0.17 0.05
Matches are distributed among these distances:
53 6 0.08
54 64 0.89
55 2 0.03
ACGTcount: A:0.38, C:0.21, G:0.12, T:0.30
Consensus pattern (54 bp):
TACCCTCAATTTGTAAAATTACCAAAATACCCCTGATGGGTGAAATTACCAAAA
Found at i:47325001 original size:54 final size:54
Alignment explanation
Indices: 47324890--47325070 Score: 175
Period size: 54 Copynumber: 3.3 Consensus size: 54
47324880 TATAGGGTAG
* * ***
47324890 AATTATCA-AAATACCCTTAGTTTGTAAAATTACCAAAATACCACTGGTTTGTGA
1 AATTA-CAGAAATACCCTCAATTTGTAAAATTACCAAAATACCACTGGTTTACAA
* * *
47324944 AATTACCGAAATACCCTCAATTTGTAAAATTACCAAAATACCCCTGATTTACAA
1 AATTACAGAAATACCCTCAATTTGTAAAATTACCAAAATACCACTGGTTTACAA
* * * * *** *
47324998 AATTATAGAAATACCCTTGACTTTCTAAAAATTATGGAAATACCATTGGTTTACAA
1 AATTACAGAAATACCC-TCAATTTGT-AAAATTACCAAAATACCACTGGTTTACAA
*
47325054 AATTACTGAAATACCCT
1 AATTACAGAAATACCCT
47325071 TGGTTTGTAG
Statistics
Matches: 103, Mismatches: 21, Indels: 5
0.80 0.16 0.04
Matches are distributed among these distances:
53 1 0.01
54 58 0.56
55 7 0.07
56 37 0.36
ACGTcount: A:0.41, C:0.19, G:0.09, T:0.31
Consensus pattern (54 bp):
AATTACAGAAATACCCTCAATTTGTAAAATTACCAAAATACCACTGGTTTACAA
Found at i:47325073 original size:27 final size:27
Alignment explanation
Indices: 47324898--47325077 Score: 121
Period size: 27 Copynumber: 6.6 Consensus size: 27
47324888 AGAATTATCA
* * *
47324898 AAATACCCTTAGTTTGTAAAATTACCA
1 AAATACCCTTGGTTTGCAAAATTACCG
**
47324925 AAATACCAC-TGGTTTGTGAAATTACCG
1 AAATACC-CTTGGTTTGCAAAATTACCG
*** * *
47324952 AAATACCCTCAATTTGTAAAATTACCA
1 AAATACCCTTGGTTTGCAAAATTACCG
* * * **
47324979 AAATACCCCTGATTTACAAAATTATAG
1 AAATACCCTTGGTTTGCAAAATTACCG
* **
47325006 AAATACCCTTGACTTT-CTAAAAATTATGG
1 AAATACCCTTG-GTTTGC--AAAATTACCG
* * *
47325035 AAATACCATTGGTTTACAAAATTACTG
1 AAATACCCTTGGTTTGCAAAATTACCG
47325062 AAATACCCTTGGTTTG
1 AAATACCCTTGGTTTG
47325078 TAGATTTACC
Statistics
Matches: 122, Mismatches: 25, Indels: 12
0.77 0.16 0.08
Matches are distributed among these distances:
26 1 0.01
27 94 0.77
28 7 0.06
29 20 0.16
ACGTcount: A:0.39, C:0.18, G:0.11, T:0.32
Consensus pattern (27 bp):
AAATACCCTTGGTTTGCAAAATTACCG
Found at i:47325160 original size:27 final size:27
Alignment explanation
Indices: 47325130--47325221 Score: 123
Period size: 27 Copynumber: 3.4 Consensus size: 27
47325120 ACCCCTATTA
*
47325130 GGTAAAAAGACCGTAAAGCCCCTGTAG
1 GGTAAAATGACCGTAAAGCCCCTGTAG
* *
47325157 GGTAAAGTGATCGTAAAGCCCCTGTAG
1 GGTAAAATGACCGTAAAGCCCCTGTAG
* *
47325184 GGTAAAGTGACCGTAATA-CCCCTGTAT
1 GGTAAAATGACCGTAA-AGCCCCTGTAG
47325211 GGTAAAATGAC
1 GGTAAAATGAC
47325222 GAATATGCCC
Statistics
Matches: 58, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
27 57 0.98
28 1 0.02
ACGTcount: A:0.34, C:0.20, G:0.26, T:0.21
Consensus pattern (27 bp):
GGTAAAATGACCGTAAAGCCCCTGTAG
Found at i:47326053 original size:26 final size:26
Alignment explanation
Indices: 47326024--47326224 Score: 280
Period size: 26 Copynumber: 7.8 Consensus size: 26
47326014 GAGGAAGTGC
47326024 AAAAGGGCTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTACCG
* **
47326050 AAAAGGGCTTATGCACCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTACCG
47326076 AAAAGGGCTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTACCG
**
47326102 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTACCG
* *
47326128 AAAAGGGCTTATGCCCTAGATTACCG
1 AAAAGGGCTTATGCCCCAGTTTACCG
* * **
47326154 AAAATGGCTTATGCCCTAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTACCG
47326180 AAAAGGGCTT-TGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTACCG
*
47326205 AAAAGGGCTT-TTCCCCAGTT
1 AAAAGGGCTTATGCCCCAGTT
47326225 ATTAAAGAGG
Statistics
Matches: 154, Mismatches: 21, Indels: 1
0.88 0.12 0.01
Matches are distributed among these distances:
25 31 0.20
26 123 0.80
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.28
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTACCG
Found at i:47326102 original size:52 final size:51
Alignment explanation
Indices: 47326024--47326224 Score: 323
Period size: 52 Copynumber: 3.9 Consensus size: 51
47326014 GAGGAAGTGC
47326024 AAAAGGGCTTATGCCCCAGTTTACCGAAAAGGGCTTATGCACCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTACCGAAAAGGGCTTATGC-CCAGTTTATTG
47326076 AAAAGGGCTTATGCCCCAGTTTACCGAAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTACCGAAAAGGGCTTATG-CCCAGTTTATTG
* * *
47326128 AAAAGGGCTTATGCCCTAGATTACCGAAAATGGCTTATGCCCTAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTACCGAAAAGGGCTTATGCCC-AGTTTATTG
* *
47326180 AAAAGGGCTT-TGCCCCAGTTTACCGAAAAGGGCTTTTCCCCAGTT
1 AAAAGGGCTTATGCCCCAGTTTACCGAAAAGGGCTTATGCCCAGTT
47326225 ATTAAAGAGG
Statistics
Matches: 139, Mismatches: 8, Indels: 6
0.91 0.05 0.04
Matches are distributed among these distances:
50 4 0.03
51 29 0.21
52 105 0.76
53 1 0.01
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.28
Consensus pattern (51 bp):
AAAAGGGCTTATGCCCCAGTTTACCGAAAAGGGCTTATGCCCAGTTTATTG
Found at i:47326428 original size:42 final size:42
Alignment explanation
Indices: 47326369--47326460 Score: 148
Period size: 42 Copynumber: 2.2 Consensus size: 42
47326359 TAGTCTCCCC
* ** *
47326369 AAATGGGCTTGCATACATTCATTGGTATTTCATGTGATATTG
1 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
47326411 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
1 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
47326453 AAATGGGC
1 AAATGGGC
47326461 CTAAGGGCCA
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 46 1.00
ACGTcount: A:0.29, C:0.14, G:0.22, T:0.35
Consensus pattern (42 bp):
AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
Found at i:47326519 original size:31 final size:31
Alignment explanation
Indices: 47326484--47326564 Score: 135
Period size: 31 Copynumber: 2.6 Consensus size: 31
47326474 CGTTTACAGT
*
47326484 AAAGGCTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTAATATGATTTATGA
*
47326515 AAAGGCTTCGGCTCAGTAATATGATTTATGA
1 AAAGGCTTCGGCCCAGTAATATGATTTATGA
*
47326546 AAAGGCTTCGGTCCAGTAA
1 AAAGGCTTCGGCCCAGTAA
47326565 CCGTTAAACG
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
31 46 1.00
ACGTcount: A:0.31, C:0.16, G:0.25, T:0.28
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGATTTATGA
Found at i:47335231 original size:22 final size:22
Alignment explanation
Indices: 47335206--47335249 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
47335196 TTTCTATGGA
47335206 TGATTCACCAAAAATATCTACT
1 TGATTCACCAAAAATATCTACT
47335228 TGATTCACCAAAAATATCTACT
1 TGATTCACCAAAAATATCTACT
47335250 AACTTTTCTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.41, C:0.23, G:0.05, T:0.32
Consensus pattern (22 bp):
TGATTCACCAAAAATATCTACT
Found at i:47338852 original size:98 final size:99
Alignment explanation
Indices: 47338719--47338917 Score: 373
Period size: 98 Copynumber: 2.0 Consensus size: 99
47338709 TATCTTTCAT
* *
47338719 ATCCTTCCATAATCTATCAAAATACCAATAACTCATGCATGGGTAATTTTTTGAACATGAACCTT
1 ATCCTTCCATAATCCATCAAAATACCAATAACTCATGCATGGGTAATTTTTTGAACATGAACCCT
47338784 AGCATGAAATATGGGTAGAAATGGAGAGAG-AAA
66 AGCATGAAATATGGGTAGAAATGGAGAGAGCAAA
47338817 ATCCTTCCATAATCCATCAAAATACCAATAACTCATGCATGGGTAATTTTTTGAACATGAACCCT
1 ATCCTTCCATAATCCATCAAAATACCAATAACTCATGCATGGGTAATTTTTTGAACATGAACCCT
47338882 AGCATGAAATATGGGTAGAAATGGAGAGAGCAAA
66 AGCATGAAATATGGGTAGAAATGGAGAGAGCAAA
47338916 AT
1 AT
47338918 ACTGGGATTT
Statistics
Matches: 98, Mismatches: 2, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
98 93 0.95
99 5 0.05
ACGTcount: A:0.40, C:0.17, G:0.17, T:0.27
Consensus pattern (99 bp):
ATCCTTCCATAATCCATCAAAATACCAATAACTCATGCATGGGTAATTTTTTGAACATGAACCCT
AGCATGAAATATGGGTAGAAATGGAGAGAGCAAA
Found at i:47346217 original size:17 final size:17
Alignment explanation
Indices: 47346195--47346228 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
47346185 GGGTACGAGG
47346195 CATTACCGGACTTACAT
1 CATTACCGGACTTACAT
47346212 CATTACCGGACTTACAT
1 CATTACCGGACTTACAT
47346229 TGCAAACAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.29, C:0.29, G:0.12, T:0.29
Consensus pattern (17 bp):
CATTACCGGACTTACAT
Found at i:47349143 original size:20 final size:21
Alignment explanation
Indices: 47349118--47349157 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
47349108 CTCTTGAAAC
*
47349118 AGGGCA-CATGCCCGTGTGGA
1 AGGGCAGCACGCCCGTGTGGA
*
47349138 AGGGCAGCACGGCCGTGTGG
1 AGGGCAGCACGCCCGTGTGG
47349158 TCATTATAAC
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 6 0.35
21 11 0.65
ACGTcount: A:0.17, C:0.25, G:0.45, T:0.12
Consensus pattern (21 bp):
AGGGCAGCACGCCCGTGTGGA
Found at i:47350537 original size:51 final size:51
Alignment explanation
Indices: 47350461--47350563 Score: 161
Period size: 51 Copynumber: 2.0 Consensus size: 51
47350451 CCTCATAACC
** * *
47350461 CTATCATGTAATGCCCGCTCATTGAGCTACTCATTGGTTTGCACTCAAGGT
1 CTATCATGTAATGCCCGCTCATTGAGCTACTCACAGATCTGCACTCAAGGT
*
47350512 CTATCATGTAATGCTCGCTCATTGAGCTACTCACAGATCTGCACTCAAGGT
1 CTATCATGTAATGCCCGCTCATTGAGCTACTCACAGATCTGCACTCAAGGT
47350563 C
1 C
47350564 AGTACCTGGA
Statistics
Matches: 47, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
51 47 1.00
ACGTcount: A:0.23, C:0.27, G:0.18, T:0.31
Consensus pattern (51 bp):
CTATCATGTAATGCCCGCTCATTGAGCTACTCACAGATCTGCACTCAAGGT
Found at i:47352488 original size:48 final size:48
Alignment explanation
Indices: 47352319--47352585 Score: 309
Period size: 48 Copynumber: 5.6 Consensus size: 48
47352309 TGAGATTCCT
47352319 TGTAAGACCATGTCTGGGACATGGCATCGGC-ATCCGA-GATATGTGCCTA-
1 TGTAAGACCATGTCTGGGACATGGCATCGGCGAT--GATG-TATGTGCC-AG
*
47352368 TGTAAGACCATGTCTGGGACATGGCATCGGTGAAAT-ATGTA--TGCCAG
1 TGTAAGACCATGTCTGGGACATGGCATCGGCG--ATGATGTATGTGCCAG
* * * *
47352415 TCTAAGACCATGTCTGGGACATGGCATCCGCGATGATGTACGTGCCGG
1 TGTAAGACCATGTCTGGGACATGGCATCGGCGATGATGTATGTGCCAG
47352463 TGTAAGACCATGTCTGGGACATGGCATCGGCGATGATGTATGTGCCAG
1 TGTAAGACCATGTCTGGGACATGGCATCGGCGATGATGTATGTGCCAG
* * *
47352511 TGTAAGACCATGTTTGGGACATGGCATCAGCGATGA--TATGTGGATTCA-
1 TGTAAGACCATGTCTGGGACATGGCATCGGCGATGATGTATGT-G--CCAG
*
47352559 TGTAAGACCATGTCAGGGACATGGCAT
1 TGTAAGACCATGTCTGGGACATGGCAT
47352586 TGGTACTTTA
Statistics
Matches: 193, Mismatches: 14, Indels: 23
0.84 0.06 0.10
Matches are distributed among these distances:
45 2 0.01
46 11 0.06
47 34 0.18
48 108 0.56
49 35 0.18
50 1 0.01
52 2 0.01
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.25
Consensus pattern (48 bp):
TGTAAGACCATGTCTGGGACATGGCATCGGCGATGATGTATGTGCCAG
Found at i:47352579 original size:144 final size:143
Alignment explanation
Indices: 47352319--47352585 Score: 373
Period size: 144 Copynumber: 1.9 Consensus size: 143
47352309 TGAGATTCCT
47352319 TGTAAGACCATGTCTGGGACATGGCATCGGCATCCGAGATATGTGCCTATGTAAGACCATGTCTG
1 TGTAAGACCATGTCTGGGACATGGCATCGGCAT-CGAGATATGTGCCTATGTAAGACCATGTCTG
* *
47352384 GGACATGGCATCGGTGAAATATGTATGCCAGTCTAAGACCATGTCTGGGACATGGCATCCGCGAT
65 GGACATGGCATCGGTGAAATATGGATGCCAGTCTAAGACCATGTCAGGGACATGGCATCCGCGAT
47352449 GATGTACGTGCCGG
130 GATGTACGTGCCGG
*
47352463 TGTAAGACCATGTCTGGGACATGGCATCGGCGAT-GATG-TATGTGCC-AGTGTAAGACCATGTT
1 TGTAAGACCATGTCTGGGACATGGCATCGGC-ATCGA-GATATGTGCCTA-TGTAAGACCATGTC
* * * *
47352525 TGGGACATGGCATCAGCGATGATATGTGGAT-TCA-TGTAAGACCATGTCAGGGACATGGCAT
63 TGGGACATGGCATC-G-G-TGAAATATGGATGCCAGTCTAAGACCATGTCAGGGACATGGCAT
47352586 TGGTACTTTA
Statistics
Matches: 110, Mismatches: 7, Indels: 12
0.85 0.05 0.09
Matches are distributed among these distances:
142 1 0.01
143 37 0.34
144 58 0.53
145 5 0.05
146 9 0.08
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.25
Consensus pattern (143 bp):
TGTAAGACCATGTCTGGGACATGGCATCGGCATCGAGATATGTGCCTATGTAAGACCATGTCTGG
GACATGGCATCGGTGAAATATGGATGCCAGTCTAAGACCATGTCAGGGACATGGCATCCGCGATG
ATGTACGTGCCGG
Found at i:47358845 original size:19 final size:20
Alignment explanation
Indices: 47358808--47358845 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
47358798 ATAAGGTGGT
47358808 AAGATGATGAATGATGTTTA
1 AAGATGATGAATGATGTTTA
47358828 AAGATG-TGATAT-ATGTTT
1 AAGATGATGA-ATGATGTTT
47358846 TGGTGGTACC
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.37, C:0.00, G:0.24, T:0.39
Consensus pattern (20 bp):
AAGATGATGAATGATGTTTA
Found at i:47364518 original size:48 final size:47
Alignment explanation
Indices: 47364354--47364620 Score: 279
Period size: 48 Copynumber: 5.6 Consensus size: 47
47364344 TGAGATTCCA
*
47364354 TGTAAGACCATGTCTGGGACATGGCATCG-GCATCTGA-GATATGTGCCTG
1 TGTAAGACCATGTCTGGGACATGGCATCGCG-A--TGATG-TATGTGCCAG
* * * * *
47364403 TGTAAGACCATGTTTGGGACATGGCATCGACGATAATATGTATG-CAG
1 TGTAAGACCATGTCTGGGACATGGCATCG-CGATGATGTATGTGCCAG
* * ** * * *
47364450 TGTAAGACCTTGTTTGGGACATTTCATCGGTGATGATGTACGTGCCGG
1 TGTAAGACCATGTCTGGGACATGGCATC-GCGATGATGTATGTGCCAG
* * *
47364498 TGTAAGACCATGTCTTGGACATGGCATTCCCGATGATGTATGTGCTAG
1 TGTAAGACCATGTCTGGGACATGGCA-TCGCGATGATGTATGTGCCAG
*
47364546 TGTAAGACCATGTCTGGGACATGGCATCAGCGATGATATATGTGCCAG
1 TGTAAGACCATGTCTGGGACATGGCATC-GCGATGATGTATGTGCCAG
*
47364594 TGTAAGACTATGTCTGGGACATGGCAT
1 TGTAAGACCATGTCTGGGACATGGCAT
47364621 TGGTACTGCA
Statistics
Matches: 180, Mismatches: 31, Indels: 15
0.80 0.14 0.07
Matches are distributed among these distances:
47 37 0.21
48 111 0.62
49 30 0.17
50 1 0.01
51 1 0.01
ACGTcount: A:0.24, C:0.18, G:0.29, T:0.29
Consensus pattern (47 bp):
TGTAAGACCATGTCTGGGACATGGCATCGCGATGATGTATGTGCCAG
Found at i:47364614 original size:144 final size:143
Alignment explanation
Indices: 47364354--47364615 Score: 347
Period size: 143 Copynumber: 1.8 Consensus size: 143
47364344 TGAGATTCCA
* *
47364354 TGTAAGACCATGTCTGGGACATGGCATCGGCATCTGAGATATGTGCCTGTGTAAGACCATGTTTG
1 TGTAAGACCATGTCTGGGACATGGCATCCGCA-CTGAGATATGTGCCTGTGTAAGACCATGTCTG
* *
47364419 GGACATGGCATCGACGATAATATGTATGCAGTGTAAGACCTTGTTTGGGACATTTCATCGGTGAT
65 GGACATGGCATCGACGATAATATATATGCAGTGTAAGACCTTGTCTGGGACATTTCATCGGTGAT
47364484 GATGTACGTGCCGG
130 GATGTACGTGCCGG
*
47364498 TGTAAGACCATGTCTTGGACATGGCATTCC-CGA-TGATG-TATGTG-CTAGTGTAAGACCATGT
1 TGTAAGACCATGTCTGGGACATGGCA-TCCGC-ACTGA-GATATGTGCCT-GTGTAAGACCATGT
* *
47364559 CTGGGACATGGCATC-AGCGATGATATATGTGCCAGTGTAAGA-CTATGTCTGGGACAT
62 CTGGGACATGGCATCGA-CGATAATATATATG-CAGTGTAAGACCT-TGTCTGGGACAT
47364616 GGCATTGGTA
Statistics
Matches: 104, Mismatches: 7, Indels: 14
0.83 0.06 0.11
Matches are distributed among these distances:
142 3 0.03
143 50 0.48
144 48 0.46
145 3 0.03
ACGTcount: A:0.24, C:0.18, G:0.29, T:0.29
Consensus pattern (143 bp):
TGTAAGACCATGTCTGGGACATGGCATCCGCACTGAGATATGTGCCTGTGTAAGACCATGTCTGG
GACATGGCATCGACGATAATATATATGCAGTGTAAGACCTTGTCTGGGACATTTCATCGGTGATG
ATGTACGTGCCGG
Found at i:47366115 original size:30 final size:30
Alignment explanation
Indices: 47366069--47366128 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
47366059 TTCCCGAGCC
47366069 TAGGGGAAAAAGTGTAATTATGCAAAAGTT
1 TAGGGGAAAAAGTGTAATTATGCAAAAGTT
* *
47366099 TAGGGGCAAAAA-TGTAATTTTGCCAAAGTT
1 TAGGGG-AAAAAGTGTAATTATGCAAAAGTT
47366129 CGTATTAAAT
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
30 22 0.81
31 5 0.19
ACGTcount: A:0.40, C:0.07, G:0.25, T:0.28
Consensus pattern (30 bp):
TAGGGGAAAAAGTGTAATTATGCAAAAGTT
Found at i:47375711 original size:11 final size:11
Alignment explanation
Indices: 47375695--47375722 Score: 56
Period size: 11 Copynumber: 2.5 Consensus size: 11
47375685 ATTAATGAAG
47375695 AAATTGGATAA
1 AAATTGGATAA
47375706 AAATTGGATAA
1 AAATTGGATAA
47375717 AAATTG
1 AAATTG
47375723 ATTTACGTGC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.54, C:0.00, G:0.18, T:0.29
Consensus pattern (11 bp):
AAATTGGATAA
Found at i:47376451 original size:98 final size:98
Alignment explanation
Indices: 47376302--47376582 Score: 353
Period size: 98 Copynumber: 2.9 Consensus size: 98
47376292 TGACATGTGT
* * *
47376302 GCTAGTATAAGA-CATGTCTGGGATAT-GCATCGGCCA-C-ATTATGAGAGCCAGTGTAAGACCA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGG-CATCGATGATGAGAGCCAGTGTAAGACCA
*
47376363 TGTCTGGGACATGGCATCGGCATTG-AGATGAGA
65 TGTCTGGGACATGGCATCGGCATCGAAGATGAGA
47376396 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCATCGATAGATGAGAGCCAGTGTAAGACCA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCATCGAT-GATGAGAGCCAGTGTAAGACCA
* *
47376461 TGTCTGGGACATGGCATCGGCCTCGATATATGAGA
65 TGTCTGGGACATGGCATCGGCATCGA-AGATGAGA
* * * * *
47376496 G-TCAGTGTAAGACCATGTTTGGGACATGGCATCGACTTTGATG-TGTGAGCCAGTGTAAGACCA
1 GCT-AGTGTAAGACCATGTCTGGGACATGGCATCGGCATCGATGATGAGAGCCAGTGTAAGACCA
*
47376559 TGT-TCGGGACATGGCGTCGGCATC
65 TGTCT-GGGACATGGCATCGGCATC
47376583 TTCCCCTATG
Statistics
Matches: 165, Mismatches: 13, Indels: 14
0.86 0.07 0.07
Matches are distributed among these distances:
94 11 0.07
95 15 0.09
96 8 0.05
97 3 0.02
98 83 0.50
99 2 0.01
100 43 0.26
ACGTcount: A:0.26, C:0.19, G:0.31, T:0.24
Consensus pattern (98 bp):
GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCATCGATGATGAGAGCCAGTGTAAGACCAT
GTCTGGGACATGGCATCGGCATCGAAGATGAGA
Found at i:47376463 original size:50 final size:50
Alignment explanation
Indices: 47376309--47376582 Score: 343
Period size: 50 Copynumber: 5.6 Consensus size: 50
47376299 TGTGCTAGTA
* *
47376309 TAAGA-CATGTCTGGGATAT-GCATCGGCCA-C-AT-TATGAGAGCCAGTG
1 TAAGACCATGTCTGGGACATGGCATCGG-CATCGATAGATGAGAGCCAGTG
* *
47376355 TAAGACCATGTCTGGGACATGGCATCGGCATTG--AGATGAGAGCTAGTG
1 TAAGACCATGTCTGGGACATGGCATCGGCATCGATAGATGAGAGCCAGTG
47376403 TAAGACCATGTCTGGGACATGGCATCGGCATCGATAGATGAGAGCCAGTG
1 TAAGACCATGTCTGGGACATGGCATCGGCATCGATAGATGAGAGCCAGTG
* * *
47376453 TAAGACCATGTCTGGGACATGGCATCGGCCTCGATATATGAGAGTCAGTG
1 TAAGACCATGTCTGGGACATGGCATCGGCATCGATAGATGAGAGCCAGTG
* * * * *
47376503 TAAGACCATGTTTGGGACATGGCATCGACTTTGAT-G-TGTGAGCCAGTG
1 TAAGACCATGTCTGGGACATGGCATCGGCATCGATAGATGAGAGCCAGTG
*
47376551 TAAGACCATGT-TCGGGACATGGCGTCGGCATC
1 TAAGACCATGTCT-GGGACATGGCATCGGCATC
47376583 TTCCCCTATG
Statistics
Matches: 200, Mismatches: 20, Indels: 14
0.85 0.09 0.06
Matches are distributed among these distances:
46 5 0.03
47 16 0.08
48 87 0.44
50 92 0.46
ACGTcount: A:0.26, C:0.19, G:0.31, T:0.24
Consensus pattern (50 bp):
TAAGACCATGTCTGGGACATGGCATCGGCATCGATAGATGAGAGCCAGTG
Found at i:47377603 original size:23 final size:24
Alignment explanation
Indices: 47377563--47377607 Score: 74
Period size: 23 Copynumber: 1.9 Consensus size: 24
47377553 CAAGTCCTAC
*
47377563 CCATCCAGCCTCTACACTCCATCT
1 CCATCCAACCTCTACACTCCATCT
47377587 CCATCCAACC-CTACACTCCAT
1 CCATCCAACCTCTACACTCCAT
47377608 GTGGGGATAA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
23 11 0.55
24 9 0.45
ACGTcount: A:0.24, C:0.51, G:0.02, T:0.22
Consensus pattern (24 bp):
CCATCCAACCTCTACACTCCATCT
Found at i:47377854 original size:27 final size:27
Alignment explanation
Indices: 47377824--47377876 Score: 79
Period size: 27 Copynumber: 2.0 Consensus size: 27
47377814 AAACATATAT
* * *
47377824 CACATAGGGGCAAAACAGTCATTTTAC
1 CACATAAGGGAAAAACACTCATTTTAC
47377851 CACATAAGGGAAAAACACTCATTTTA
1 CACATAAGGGAAAAACACTCATTTTA
47377877 TCAATTACGG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.42, C:0.21, G:0.15, T:0.23
Consensus pattern (27 bp):
CACATAAGGGAAAAACACTCATTTTAC
Found at i:47383901 original size:47 final size:46
Alignment explanation
Indices: 47383792--47383901 Score: 159
Period size: 46 Copynumber: 2.3 Consensus size: 46
47383782 AGCTTAAGAT
*
47383792 CGAATGGCCAATGTGATGAATGTGAAAGTGTGTATATGTGATAAGGC
1 CGAATGGCCAATGTGATGAATGTGAAAG-GTGAATATGTGATAAGGC
*
47383839 CGAATGGCCAATGTGATGATATGTGTAA-GTGAATATGTGATAAGGC
1 CGAATGGCCAATGTGATGA-ATGTGAAAGGTGAATATGTGATAAGGC
*
47383885 CGAATGACCAATTGTGA
1 CGAATGGCCAA-TGTGA
47383902 AAAGTGTGCA
Statistics
Matches: 58, Mismatches: 3, Indels: 4
0.89 0.05 0.06
Matches are distributed among these distances:
46 27 0.47
47 24 0.41
48 7 0.12
ACGTcount: A:0.33, C:0.10, G:0.30, T:0.27
Consensus pattern (46 bp):
CGAATGGCCAATGTGATGAATGTGAAAGGTGAATATGTGATAAGGC
Found at i:47384027 original size:39 final size:40
Alignment explanation
Indices: 47383972--47384056 Score: 109
Period size: 40 Copynumber: 2.1 Consensus size: 40
47383962 AAATGAATTG
* * * *
47383972 TGCTGAGATTGCATCCGGG-TTAGAGACCCGCTGGCTTCA
1 TGCTGGGATTGCATCCGGGTTTAAAGACCCGCAGGCTTAA
* *
47384011 TGCTGGGATTGTATCCGGGTTTAAAGTCCCGCAGGCTTAA
1 TGCTGGGATTGCATCCGGGTTTAAAGACCCGCAGGCTTAA
47384051 TGCTGG
1 TGCTGG
47384057 TGAATTAAGT
Statistics
Matches: 39, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
39 17 0.44
40 22 0.56
ACGTcount: A:0.18, C:0.22, G:0.32, T:0.28
Consensus pattern (40 bp):
TGCTGGGATTGCATCCGGGTTTAAAGACCCGCAGGCTTAA
Found at i:47386657 original size:40 final size:40
Alignment explanation
Indices: 47386602--47386917 Score: 560
Period size: 40 Copynumber: 7.9 Consensus size: 40
47386592 CTCGCCGATG
*
47386602 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGAGTTAT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTAT
* *
47386642 ATCCGGGCTAAGTCCCGAAGAGCATACGTGCTGGTGATAT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTAT
*
47386682 ATCCGGGCTAAGTCCTGAAGAGCATTCGTGCTGGTGTTAT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTAT
47386722 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTAT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTAT
*
47386762 ATCCGGGCTAAGTCCCGAAAAGCATTCGTGCTGGTGTTAT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTAT
*
47386802 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGAGTTAT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTAT
47386842 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTAT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTAT
* *
47386882 ATCCGGGCTAGGTCCCGAAGAGCATTCATGCTGGTG
1 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTG
47386918 ATGTGTATTC
Statistics
Matches: 263, Mismatches: 13, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 263 1.00
ACGTcount: A:0.22, C:0.22, G:0.30, T:0.26
Consensus pattern (40 bp):
ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTAT
Found at i:47387131 original size:25 final size:25
Alignment explanation
Indices: 47387081--47387131 Score: 59
Period size: 25 Copynumber: 2.0 Consensus size: 25
47387071 TGTGTAACAA
* *
47387081 CAAATGAATAGGGGCACTATGTGTG
1 CAAATGAATAGAGGCACTATGAGTG
*
47387106 CAAATGATTAGAGGCACTGA-GAGTG
1 CAAATGAATAGAGGCACT-ATGAGTG
47387131 C
1 C
47387132 GAGTTCTTCA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
25 21 0.95
26 1 0.05
ACGTcount: A:0.33, C:0.14, G:0.31, T:0.22
Consensus pattern (25 bp):
CAAATGAATAGAGGCACTATGAGTG
Found at i:47390834 original size:45 final size:46
Alignment explanation
Indices: 47390737--47390845 Score: 150
Period size: 45 Copynumber: 2.3 Consensus size: 46
47390727 AACTTAAGAT
*
47390737 CGAATGGCCAATGTGATGAATGTGAAAGTGTGTATATGTGATAAGGC
1 CGAATGGCCAATGTGATGAATGTGAAAG-GTGAATATGTGATAAGGC
*
47390784 CGAATGGCCAATGTGAT-ATATGTGTAA-GTGAATATGTGATAAGGC
1 CGAATGGCCAATGTGATGA-ATGTGAAAGGTGAATATGTGATAAGGC
*
47390829 CGAATGACCAATTGTGA
1 CGAATGGCCAA-TGTGA
47390846 AAAGTGTGCA
Statistics
Matches: 57, Mismatches: 3, Indels: 5
0.88 0.05 0.08
Matches are distributed among these distances:
45 27 0.47
46 6 0.11
47 24 0.42
ACGTcount: A:0.33, C:0.10, G:0.29, T:0.28
Consensus pattern (46 bp):
CGAATGGCCAATGTGATGAATGTGAAAGGTGAATATGTGATAAGGC
Found at i:47393364 original size:38 final size:38
Alignment explanation
Indices: 47393322--47393396 Score: 123
Period size: 38 Copynumber: 2.0 Consensus size: 38
47393312 AAAGACCCAC
*
47393322 AGGCTTCGTGCTGGTAAAATATCCGGGTTAAATCCCGT
1 AGGCTTCGTGCTGGTAAAATATCCGGGATAAATCCCGT
**
47393360 AGGCTTCGTGCTGGTATTATATCCGGGATAAATCCCG
1 AGGCTTCGTGCTGGTAAAATATCCGGGATAAATCCCG
47393397 CAAGCCTAGT
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
38 34 1.00
ACGTcount: A:0.23, C:0.21, G:0.27, T:0.29
Consensus pattern (38 bp):
AGGCTTCGTGCTGGTAAAATATCCGGGATAAATCCCGT
Found at i:47393413 original size:38 final size:38
Alignment explanation
Indices: 47393329--47393424 Score: 111
Period size: 38 Copynumber: 2.5 Consensus size: 38
47393319 CACAGGCTTC
** * * * * *
47393329 GTGCTGGTAAAATATCCGGGTTAAATCCCGTAGGCTTC
1 GTGCTGGTATTATATCCGGGATAAATCCCGCAAGCCTA
47393367 GTGCTGGTATTATATCCGGGATAAATCCCGCAAGCCTA
1 GTGCTGGTATTATATCCGGGATAAATCCCGCAAGCCTA
* *
47393405 GTGTTGGTATTATATTCGGG
1 GTGCTGGTATTATATCCGGG
47393425 CCTTCGTGCC
Statistics
Matches: 49, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
38 49 1.00
ACGTcount: A:0.23, C:0.19, G:0.27, T:0.31
Consensus pattern (38 bp):
GTGCTGGTATTATATCCGGGATAAATCCCGCAAGCCTA
Found at i:47393478 original size:43 final size:43
Alignment explanation
Indices: 47393417--47393519 Score: 163
Period size: 43 Copynumber: 2.4 Consensus size: 43
47393407 GTTGGTATTA
*
47393417 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTG-CTGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCACGCTTCGTGTC-GGTGATGTG
*
47393460 TATTCGGGCCTTCGTGCCTAGCACTCTTCGTGTCGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCACGCTTCGTGTCGGTGATGTG
*
47393503 TATTTGGGCCTTCGTGC
1 TATTCGGGCCTTCGTGC
47393520 ACGAAGATGT
Statistics
Matches: 56, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
43 55 0.98
44 1 0.02
ACGTcount: A:0.09, C:0.24, G:0.32, T:0.35
Consensus pattern (43 bp):
TATTCGGGCCTTCGTGCCTAGCACGCTTCGTGTCGGTGATGTG
Found at i:47393534 original size:71 final size:71
Alignment explanation
Indices: 47393454--47393590 Score: 229
Period size: 71 Copynumber: 1.9 Consensus size: 71
47393444 TCGTGCTGGT
* * *
47393454 GATGTGTATTCGGGCCTTCGTGCCTAGCACTCTTCGTGTCGGTGATGTGTATTTGGGCCTTCGTG
1 GATGTGTATTCGGGCCTTCGTGCCTAGCACGCTTCGTGCCGGTGATGTGTATTCGGGCCTTCGTG
47393519 CACGAA
66 CACGAA
* *
47393525 GATGTGTATTCGGGCCTTCGTGCCTAGTAGGCTTCGTGCCGGTGATGTGTATTCGGGCCTTCGTG
1 GATGTGTATTCGGGCCTTCGTGCCTAGCACGCTTCGTGCCGGTGATGTGTATTCGGGCCTTCGTG
47393590 C
66 C
47393591 CTAGCAGGCG
Statistics
Matches: 61, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
71 61 1.00
ACGTcount: A:0.11, C:0.23, G:0.33, T:0.34
Consensus pattern (71 bp):
GATGTGTATTCGGGCCTTCGTGCCTAGCACGCTTCGTGCCGGTGATGTGTATTCGGGCCTTCGTG
CACGAA
Found at i:47393608 original size:43 final size:43
Alignment explanation
Indices: 47393525--47393612 Score: 140
Period size: 43 Copynumber: 2.0 Consensus size: 43
47393515 CGTGCACGAA
* * **
47393525 GATGTGTATTCGGGCCTTCGTGCCTAGTAGGCTTCGTGCCGGT
1 GATGTGTATTCGGGCCTTCGTGCCTAGCAGGCGTAATGCCGGT
47393568 GATGTGTATTCGGGCCTTCGTGCCTAGCAGGCGTAATGCCGGT
1 GATGTGTATTCGGGCCTTCGTGCCTAGCAGGCGTAATGCCGGT
47393611 GA
1 GA
47393613 AATGATATGT
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
43 41 1.00
ACGTcount: A:0.12, C:0.23, G:0.35, T:0.30
Consensus pattern (43 bp):
GATGTGTATTCGGGCCTTCGTGCCTAGCAGGCGTAATGCCGGT
Found at i:47419662 original size:50 final size:50
Alignment explanation
Indices: 47419546--47419784 Score: 266
Period size: 50 Copynumber: 4.8 Consensus size: 50
47419536 AGGTGACAAC
* * * ** * *
47419546 GCCATGTCTCAGACATGGTCTTACACTAGCTCTCA-A-ATTAAAGTCGAT
1 GCCATGTCCCAAACATGGTCTTACACTAACTCTCATATATCGATGCCGAT
* * * *
47419594 GACATGTCCCAAACATGGTCTTAGACTAACTCTCGTATATCGAGGCCGAT
1 GCCATGTCCCAAACATGGTCTTACACTAACTCTCATATATCGATGCCGAT
* * * * * *
47419644 TCCATGTCCCAAATATGGTCTTGCACTGACTTTCATATATCGATGCCAAT
1 GCCATGTCCCAAACATGGTCTTACACTAACTCTCATATATCGATGCCGAT
** *
47419694 GCCATGTCCCAAACATGGTCTTACACTGGCTCTCATCTATCGATGCCGAT
1 GCCATGTCCCAAACATGGTCTTACACTAACTCTCATATATCGATGCCGAT
* *
47419744 GCCATGTCCCAGACATGGTCTTACACTATCTCTCATATATC
1 GCCATGTCCCAAACATGGTCTTACACTAACTCTCATATATC
47419785 CCTAGCATCA
Statistics
Matches: 158, Mismatches: 31, Indels: 2
0.83 0.16 0.01
Matches are distributed among these distances:
48 29 0.18
49 1 0.01
50 128 0.81
ACGTcount: A:0.26, C:0.28, G:0.16, T:0.30
Consensus pattern (50 bp):
GCCATGTCCCAAACATGGTCTTACACTAACTCTCATATATCGATGCCGAT
Found at i:47430773 original size:20 final size:20
Alignment explanation
Indices: 47430748--47430789 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
47430738 TTAGAGACTA
*
47430748 AAACTTCTGGA-AAATTTTTG
1 AAACTTCT-GATAAATATTTG
47430768 AAACTTCTGATAAATATTTG
1 AAACTTCTGATAAATATTTG
47430788 AA
1 AA
47430790 GCATAAAACA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
19 2 0.10
20 18 0.90
ACGTcount: A:0.40, C:0.10, G:0.12, T:0.38
Consensus pattern (20 bp):
AAACTTCTGATAAATATTTG
Found at i:47434060 original size:79 final size:81
Alignment explanation
Indices: 47433936--47434119 Score: 227
Period size: 79 Copynumber: 2.3 Consensus size: 81
47433926 GCTACTCGTT
* *
47433936 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAATGCCTTCGGGA-CTTAACCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAATGCCTTC-GGATCTTAACCCG
* *
47433999 GATTTAGTAAC-TCGCA
65 GATATAGTAACTTAGCA
* **
47434015 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCAC-AATGCCTTCGGATCTTAACCCG
* *
47434078 GATATGGTCACTTAGCA
65 GATATAGTAACTTAGCA
47434095 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
47434120 CATCATTCAA
Statistics
Matches: 91, Mismatches: 9, Indels: 9
0.83 0.08 0.08
Matches are distributed among these distances:
78 24 0.26
79 48 0.53
80 19 0.21
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (81 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAATGCCTTCGGATCTTAACCCGG
ATATAGTAACTTAGCA
Found at i:47434119 original size:40 final size:40
Alignment explanation
Indices: 47433917--47434119 Score: 229
Period size: 39 Copynumber: 5.1 Consensus size: 40
47433907 CGGAATTTAA
** *
47433917 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
47433957 CCGGTTATAGTAACTCGCAC-AATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
47433996 CCGGATTTAGTAACTCGCACAAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
47434035 CCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
47434075 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
47434115 CCGGA
1 CCGGA
47434120 CATCATTCAA
Statistics
Matches: 139, Mismatches: 16, Indels: 16
0.81 0.09 0.09
Matches are distributed among these distances:
38 2 0.01
39 68 0.49
40 57 0.41
41 12 0.09
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:47441778 original size:79 final size:82
Alignment explanation
Indices: 47441667--47441851 Score: 229
Period size: 79 Copynumber: 2.3 Consensus size: 82
47441657 GCTACTCGTT
* * *
47441667 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAATTGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
* *
47441730 GGATTTAGTAAC-TCGCA
65 GGATATAGTAACTTAGCA
* **
47441747 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
* *
47441810 GATATGGTCACTTAGCA
66 GATATAGTAACTTAGCA
47441827 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
47441852 CATCATTCAA
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 3 0.03
79 54 0.59
80 34 0.37
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (82 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
GATATAGTAACTTAGCA
Found at i:47441851 original size:40 final size:40
Alignment explanation
Indices: 47441648--47441851 Score: 229
Period size: 40 Copynumber: 5.1 Consensus size: 40
47441638 CGGAATTTAA
** *
47441648 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
47441688 CCGGTTATAGTAACTCGCACAATTGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
47441728 CCGGATTTAGTAACTCGCACAAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
47441767 CCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
47441807 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
47441847 CCGGA
1 CCGGA
47441852 CATCATTCAA
Statistics
Matches: 139, Mismatches: 18, Indels: 14
0.81 0.11 0.08
Matches are distributed among these distances:
38 2 0.01
39 33 0.24
40 92 0.66
41 12 0.09
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:47444675 original size:5 final size:5
Alignment explanation
Indices: 47444667--47444708 Score: 52
Period size: 5 Copynumber: 8.6 Consensus size: 5
47444657 ATTTTATGTT
*
47444667 ATATA ATAT- A-ATA ATATA ATATA ATATA ACAATA ATATA ATA
1 ATATA ATATA ATATA ATATA ATATA ATATA A-TATA ATATA ATA
47444709 ACATAATATC
Statistics
Matches: 32, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
3 2 0.06
4 2 0.06
5 24 0.75
6 4 0.12
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.36
Consensus pattern (5 bp):
ATATA
Found at i:47444685 original size:13 final size:13
Alignment explanation
Indices: 47444667--47444717 Score: 57
Period size: 13 Copynumber: 3.7 Consensus size: 13
47444657 ATTTTATGTT
47444667 ATATAATATAATA
1 ATATAATATAATA
47444680 ATATAATATAATATA
1 ATATAATAT-A-ATA
*
47444695 ACAATAATATAATA
1 A-TATAATATAATA
*
47444709 ACATAATAT
1 ATATAATAT
47444718 CATTTACTTA
Statistics
Matches: 33, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
13 16 0.48
14 5 0.15
15 5 0.15
16 7 0.21
ACGTcount: A:0.61, C:0.04, G:0.00, T:0.35
Consensus pattern (13 bp):
ATATAATATAATA
Found at i:47466348 original size:43 final size:43
Alignment explanation
Indices: 47466300--47466445 Score: 133
Period size: 43 Copynumber: 3.4 Consensus size: 43
47466290 TGTGATTTCA
47466300 TGTAAGACCATG-CTTGGGACATTGGCAAT-GTATTA-AGATTACG
1 TGTAAGACCATGTC-TGGGACATTGGC-ATCGTATTATA-ATTACG
*
47466343 TGTAAGACCATGTCTGGGACATTGGCATCGTATTATAATTTCG
1 TGTAAGACCATGTCTGGGACATTGGCATCGTATTATAATTACG
* * * **
47466386 TGTAAGAATC-TGTCTGGGAAAGTGGCATCGATATGTAT--TTATA
1 TGTAAG-ACCATGTCTGGGACATTGGCATCG-TAT-TATAATTACG
*
47466429 TGTAAGACCATATCTGG
1 TGTAAGACCATGTCTGG
47466446 CATTGTACAA
Statistics
Matches: 87, Mismatches: 9, Indels: 14
0.79 0.08 0.13
Matches are distributed among these distances:
42 4 0.05
43 73 0.84
44 7 0.08
45 3 0.03
ACGTcount: A:0.29, C:0.14, G:0.25, T:0.33
Consensus pattern (43 bp):
TGTAAGACCATGTCTGGGACATTGGCATCGTATTATAATTACG
Found at i:47469124 original size:635 final size:635
Alignment explanation
Indices: 47467914--47469190 Score: 2527
Period size: 635 Copynumber: 2.0 Consensus size: 635
47467904 GAGAATGATG
47467914 TGTATTGATCGGTAATGCCTTATAACCCTATTCTAGCGATGGATATGGGTTAGGGGTGTTACATG
1 TGTATTGATCGGTAATGCCTTATAACCCTATTCTAGCGATGGATATGGGTTAGGGGTGTTACATG
47467979 TGTGAGGGACACAGCCTCAGGCACGGGCATGTGTCTCGACCGTGTGAAGTCTGCACCTATTTCAT
66 TGTGAGGGACACAGCCTCAGGCACGGGCATGTGTCTCGACCGTGTGAAGTCTGCACCTATTTCAT
*
47468044 GAAAATTAAATTAACCACATGGCCTAGCACATGGGCATGTGACTTGGCCTTGTGATCTCAACTTG
131 GAAAATTAAATTAACCACATGGCCTAGCACATGGGCATGTGACTTGGCCGTGTGATCTCAACTTG
47468109 TTCATGCTTTGTAAAACAGAAAGTTTCACGGCTTAGAGACACGGGCGTGTGTGACCACACGGCCT
196 TTCATGCTTTGTAAAACAGAAAGTTTCACGGCTTAGAGACACGGGCGTGTGTGACCACACGGCCT
47468174 GCCCACACAAGCATGTCCCAAACCACACAGGCGTGTAACCCCTGTTCATAGAAAAAGATTTTCTA
261 GCCCACACAAGCATGTCCCAAACCACACAGGCGTGTAACCCCTGTTCATAGAAAAAGATTTTCTA
47468239 AGTTTTGTAAAAATTTCTATAGTTGTCAATTTAGTCCTGAACCACTTCCAAAGCATGTTTTGGGC
326 AGTTTTGTAAAAATTTCTATAGTTGTCAATTTAGTCCTGAACCACTTCCAAAGCATGTTTTGGGC
47468304 GTAGGCTCGTATTAGGGACTTTATGATTGAATACAAATGGTTTTAATTTGGATGAAAATTTATGC
391 GTAGGCTCGTATTAGGGACTTTATGATTGAATACAAATGGTTTTAATTTGGATGAAAATTTATGC
47468369 CTTGGAATTGTATGTTTGTAACACCCCTTACCCGTATCCAATGCCAAAATAGGGTACAAGGCATT
456 CTTGGAATTGTATGTTTGTAACACCCCTTACCCGTATCCAATGCCAAAATAGGGTACAAGGCATT
47468434 ACCAGACTTATACACAAGCAATAATACAAAATCGAGACATAAATTTCCATCTGAATTTAAAACTT
521 ACCAGACTTATACACAAGCAATAATACAAAATCGAGACATAAATTTCCATCTGAATTTAAAACTT
47468499 TTCATTTTCAATTATGTTGTCCCTAAAACGAACCTGCGAGGCCCAAAACA
586 TTCATTTTCAATTATGTTGTCCCTAAAACGAACCTGCGAGGCCCAAAACA
47468549 TGTATTGATCGGTAATGCCTTATAACCCTATTCTAGCGATGGATATGGGTTAGGGGTGTTACATG
1 TGTATTGATCGGTAATGCCTTATAACCCTATTCTAGCGATGGATATGGGTTAGGGGTGTTACATG
47468614 TGTGAGGGACACAGCCTCAGGCACGGGCATGTGTCTCGACCGTGTGAAGTCTGCACCTATTTCAT
66 TGTGAGGGACACAGCCTCAGGCACGGGCATGTGTCTCGACCGTGTGAAGTCTGCACCTATTTCAT
47468679 GAAAATTAAATTAACCACATGGCCTAGCACATGGGCATGTGACTTGGCCGTGTGATCTCAACTTG
131 GAAAATTAAATTAACCACATGGCCTAGCACATGGGCATGTGACTTGGCCGTGTGATCTCAACTTG
47468744 TTCATGCTTTGTAAAACAGAAAGTTTCACGGCTTAGAGACACGGGCGTGTGTGACCACACGGCCT
196 TTCATGCTTTGTAAAACAGAAAGTTTCACGGCTTAGAGACACGGGCGTGTGTGACCACACGGCCT
47468809 GCCCACACAAGCATGTCCCAAACCACACAGGCGTGTAACCCCTGTTCATAGAAAAAGATTTTCTA
261 GCCCACACAAGCATGTCCCAAACCACACAGGCGTGTAACCCCTGTTCATAGAAAAAGATTTTCTA
*
47468874 AGTTTTGTAAAAATTTCTATAGTTGTCAGTTTAGTCCTGAACCACTTCCAAAGCATGTTTTGGGC
326 AGTTTTGTAAAAATTTCTATAGTTGTCAATTTAGTCCTGAACCACTTCCAAAGCATGTTTTGGGC
47468939 GTAGGCTCGTATTAGGGACTTTATGATTGAATACAAATGGTTTTAATTTGGATGAAAATTTATGC
391 GTAGGCTCGTATTAGGGACTTTATGATTGAATACAAATGGTTTTAATTTGGATGAAAATTTATGC
*
47469004 CTTGGAATTGTATGTTTGTAACACCCCTTACCCGTATCCAATGCCAGAATAGGGTACAAGGCATT
456 CTTGGAATTGTATGTTTGTAACACCCCTTACCCGTATCCAATGCCAAAATAGGGTACAAGGCATT
47469069 ACCAGACTTATACACAAGCAATAATACAAAATCGAGACATAAATTTCCATCTGAATTTAAAACTT
521 ACCAGACTTATACACAAGCAATAATACAAAATCGAGACATAAATTTCCATCTGAATTTAAAACTT
47469134 TTCATTTTCAATTATGTTGTCCCTAAAACGAACCTGCGAGGCCCAAAACA
586 TTCATTTTCAATTATGTTGTCCCTAAAACGAACCTGCGAGGCCCAAAACA
47469184 TGTATTG
1 TGTATTG
47469191 GAGGTGGTTT
Statistics
Matches: 639, Mismatches: 3, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
635 639 1.00
ACGTcount: A:0.30, C:0.21, G:0.20, T:0.29
Consensus pattern (635 bp):
TGTATTGATCGGTAATGCCTTATAACCCTATTCTAGCGATGGATATGGGTTAGGGGTGTTACATG
TGTGAGGGACACAGCCTCAGGCACGGGCATGTGTCTCGACCGTGTGAAGTCTGCACCTATTTCAT
GAAAATTAAATTAACCACATGGCCTAGCACATGGGCATGTGACTTGGCCGTGTGATCTCAACTTG
TTCATGCTTTGTAAAACAGAAAGTTTCACGGCTTAGAGACACGGGCGTGTGTGACCACACGGCCT
GCCCACACAAGCATGTCCCAAACCACACAGGCGTGTAACCCCTGTTCATAGAAAAAGATTTTCTA
AGTTTTGTAAAAATTTCTATAGTTGTCAATTTAGTCCTGAACCACTTCCAAAGCATGTTTTGGGC
GTAGGCTCGTATTAGGGACTTTATGATTGAATACAAATGGTTTTAATTTGGATGAAAATTTATGC
CTTGGAATTGTATGTTTGTAACACCCCTTACCCGTATCCAATGCCAAAATAGGGTACAAGGCATT
ACCAGACTTATACACAAGCAATAATACAAAATCGAGACATAAATTTCCATCTGAATTTAAAACTT
TTCATTTTCAATTATGTTGTCCCTAAAACGAACCTGCGAGGCCCAAAACA
Found at i:47472171 original size:10 final size:10
Alignment explanation
Indices: 47472146--47472184 Score: 51
Period size: 10 Copynumber: 3.9 Consensus size: 10
47472136 GTGCAATTCT
*
47472146 ATCAAAAATA
1 ATCAAAATTA
*
47472156 ACCAAAATTA
1 ATCAAAATTA
47472166 ATCAAAATTA
1 ATCAAAATTA
*
47472176 ATTAAAATT
1 ATCAAAATT
47472185 CAACATGTTC
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
10 25 1.00
ACGTcount: A:0.62, C:0.10, G:0.00, T:0.28
Consensus pattern (10 bp):
ATCAAAATTA
Found at i:47480616 original size:29 final size:29
Alignment explanation
Indices: 47480574--47480629 Score: 112
Period size: 29 Copynumber: 1.9 Consensus size: 29
47480564 GTGGTAAGGT
47480574 GTTAGCTTGCCTTGGGGTCCCGTGTTTGA
1 GTTAGCTTGCCTTGGGGTCCCGTGTTTGA
47480603 GTTAGCTTGCCTTGGGGTCCCGTGTTT
1 GTTAGCTTGCCTTGGGGTCCCGTGTTT
47480630 TAGTCCCTGT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 27 1.00
ACGTcount: A:0.05, C:0.21, G:0.34, T:0.39
Consensus pattern (29 bp):
GTTAGCTTGCCTTGGGGTCCCGTGTTTGA
Found at i:47483849 original size:49 final size:50
Alignment explanation
Indices: 47483793--47484024 Score: 281
Period size: 49 Copynumber: 4.7 Consensus size: 50
47483783 GGACAAAATG
* * *
47483793 GTACTAAGTGTAGGCTACTATGTGTACCGGATAATT-GGTCGCATGTGTA
1 GTACTAAGTGCAGGCTACTATGTGTACCAGATAATTAGGTCACATGTGTA
* * *
47483842 GTACTAAGTGCAGGCTACTATGCGTACCAGATAACTTCA-ATCACGTGTGTA
1 GTACTAAGTGCAGGCTACTATGTGTACCAGATAA-TT-AGGTCACATGTGTA
* * * **
47483893 GTGCTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCACATGTGTA
1 GTACTAAGTGCAGGCTACTATGTGTACCAGATAATTAGGTCACATGTGTA
* * * *
47483943 GTACTAAGTGCAGGCTACTACGTGTACCGGATAATT-GGTCGCGTGTGTA
1 GTACTAAGTGCAGGCTACTATGTGTACCAGATAATTAGGTCACATGTGTA
*
47483992 GTACTAAGTGCAGGCTACTATGCGTACCAGATA
1 GTACTAAGTGCAGGCTACTATGTGTACCAGATA
47484025 GCCTTGTCTA
Statistics
Matches: 155, Mismatches: 24, Indels: 8
0.83 0.13 0.04
Matches are distributed among these distances:
49 73 0.47
50 45 0.29
51 37 0.24
ACGTcount: A:0.26, C:0.18, G:0.27, T:0.29
Consensus pattern (50 bp):
GTACTAAGTGCAGGCTACTATGTGTACCAGATAATTAGGTCACATGTGTA
Found at i:47483955 original size:101 final size:98
Alignment explanation
Indices: 47483793--47484024 Score: 293
Period size: 101 Copynumber: 2.3 Consensus size: 98
47483783 GGACAAAATG
* * * *
47483793 GTACTAAGTGTAGGCTACTATGTGTACCGGATAATTGGTCGCATGTGTAGTACTAAGTGCAGGCT
1 GTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCACATGTGTAGTACTAAGTGCAGGCT
*
47483858 ACTATGCGTACCAGATAACTTCAATCACGTGTGTA
66 ACTACGCGTACCAGATAA-TT-AATCACGTGTGTA
* * **
47483893 GTGCTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCACATGTGTAGTACTAAGTGCAGGC
1 GTACTAAGTGCAGGCTACTACGTGTACCAGATAATT-GGTCACATGTGTAGTACTAAGTGCAGGC
* * ** *
47483958 TACTACGTGTACCGGATAATTGGTCGCGTGTGTA
65 TACTACGCGTACCAGATAATTAATCACGTGTGTA
* *
47483992 GTACTAAGTGCAGGCTACTATGCGTACCAGATA
1 GTACTAAGTGCAGGCTACTACGTGTACCAGATA
47484025 GCCTTGTCTA
Statistics
Matches: 112, Mismatches: 19, Indels: 3
0.84 0.14 0.02
Matches are distributed among these distances:
99 38 0.34
100 31 0.28
101 43 0.38
ACGTcount: A:0.26, C:0.18, G:0.27, T:0.29
Consensus pattern (98 bp):
GTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCACATGTGTAGTACTAAGTGCAGGCT
ACTACGCGTACCAGATAATTAATCACGTGTGTA
Found at i:47487542 original size:23 final size:22
Alignment explanation
Indices: 47487516--47487589 Score: 71
Period size: 23 Copynumber: 3.3 Consensus size: 22
47487506 CTTTATGGTG
47487516 TATTCTGTGTTACCTATGTGACA
1 TATTCTGTGTTACCTATGTG-CA
** *
47487539 TATTCTGT-AAAGCCTTTGTGGCA
1 TATTCTGTGTTA-CCTATGT-GCA
47487562 TATTCCT-TGTTACCTATGTGCA
1 TATT-CTGTGTTACCTATGTGCA
47487584 TATTCT
1 TATTCT
47487590 ATAAAGCCTT
Statistics
Matches: 41, Mismatches: 6, Indels: 10
0.72 0.11 0.18
Matches are distributed among these distances:
21 2 0.05
22 8 0.20
23 27 0.66
24 4 0.10
ACGTcount: A:0.20, C:0.19, G:0.16, T:0.45
Consensus pattern (22 bp):
TATTCTGTGTTACCTATGTGCA
Found at i:47487566 original size:46 final size:45
Alignment explanation
Indices: 47487495--47487610 Score: 162
Period size: 46 Copynumber: 2.6 Consensus size: 45
47487485 ACACATAATG
* * **
47487495 TTCTGTAAAGTCTTTATGGTGTATT-CTGTGTTACCTATGTGACATA
1 TTCTGTAAAGCCTTTGTGGCATATTCCT-TGTTACCTATGTG-CATA
47487541 TTCTGTAAAGCCTTTGTGGCATATTCCTTGTTACCTATGTGCATA
1 TTCTGTAAAGCCTTTGTGGCATATTCCTTGTTACCTATGTGCATA
*
47487586 TTCTATAAAGCCTTTGTGGCATATT
1 TTCTGTAAAGCCTTTGTGGCATATT
47487611 TCATGTAACT
Statistics
Matches: 64, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
45 28 0.44
46 34 0.53
47 2 0.03
ACGTcount: A:0.22, C:0.16, G:0.18, T:0.44
Consensus pattern (45 bp):
TTCTGTAAAGCCTTTGTGGCATATTCCTTGTTACCTATGTGCATA
Found at i:47487600 original size:45 final size:46
Alignment explanation
Indices: 47487523--47487610 Score: 160
Period size: 45 Copynumber: 1.9 Consensus size: 46
47487513 GTGTATTCTG
*
47487523 TGTTACCTATGTGACATATTCTGTAAAGCCTTTGTGGCATATTCCT
1 TGTTACCTATGTGACATATTCTATAAAGCCTTTGTGGCATATTCCT
47487569 TGTTACCTATGTG-CATATTCTATAAAGCCTTTGTGGCATATT
1 TGTTACCTATGTGACATATTCTATAAAGCCTTTGTGGCATATT
47487611 TCATGTAACT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
45 28 0.68
46 13 0.32
ACGTcount: A:0.23, C:0.18, G:0.17, T:0.42
Consensus pattern (46 bp):
TGTTACCTATGTGACATATTCTATAAAGCCTTTGTGGCATATTCCT
Found at i:47487610 original size:23 final size:22
Alignment explanation
Indices: 47487532--47487610 Score: 72
Period size: 23 Copynumber: 3.5 Consensus size: 22
47487522 GTGTTACCTA
*
47487532 TGTGACATATTCTGTAAAGCCTT
1 TGTGGCATATTCT-TAAAGCCTT
** *
47487555 TGTGGCATATTCCTTGTTA-CCTA
1 TGTGGCATATT-CTT-AAAGCCTT
47487578 TGT-GCATATTCTATAAAGCCTT
1 TGTGGCATATTCT-TAAAGCCTT
47487600 TGTGGCATATT
1 TGTGGCATATT
47487611 TCATGTAACT
Statistics
Matches: 44, Mismatches: 7, Indels: 10
0.72 0.11 0.16
Matches are distributed among these distances:
21 3 0.07
22 14 0.32
23 24 0.55
24 3 0.07
ACGTcount: A:0.23, C:0.18, G:0.18, T:0.42
Consensus pattern (22 bp):
TGTGGCATATTCTTAAAGCCTT
Found at i:47488915 original size:24 final size:24
Alignment explanation
Indices: 47488877--47488950 Score: 112
Period size: 24 Copynumber: 3.1 Consensus size: 24
47488867 CATGTATTGA
*
47488877 CATTCAAATCAGCACACATAGTGC
1 CATTCAAATCCGCACACATAGTGC
* *
47488901 CATTCAATTTCGCACACATAGTGC
1 CATTCAAATCCGCACACATAGTGC
*
47488925 CATTCAAATCCGCACACTTAGTGC
1 CATTCAAATCCGCACACATAGTGC
47488949 CA
1 CA
47488951 ATGTTGACCC
Statistics
Matches: 44, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 44 1.00
ACGTcount: A:0.32, C:0.31, G:0.12, T:0.24
Consensus pattern (24 bp):
CATTCAAATCCGCACACATAGTGC
Found at i:47492609 original size:29 final size:29
Alignment explanation
Indices: 47492567--47492630 Score: 110
Period size: 29 Copynumber: 2.2 Consensus size: 29
47492557 GGCTACCCCA
* *
47492567 TGTGCCCTAAAAATGGCCACACATGCTCG
1 TGTGCCCTAAAAATGGCCACACACGCCCG
47492596 TGTGCCCTAAAAATGGCCACACACGCCCG
1 TGTGCCCTAAAAATGGCCACACACGCCCG
47492625 TGTGCC
1 TGTGCC
47492631 AGGCCATGCC
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
29 33 1.00
ACGTcount: A:0.25, C:0.34, G:0.22, T:0.19
Consensus pattern (29 bp):
TGTGCCCTAAAAATGGCCACACACGCCCG
Found at i:47494350 original size:50 final size:49
Alignment explanation
Indices: 47494273--47494414 Score: 212
Period size: 50 Copynumber: 2.8 Consensus size: 49
47494263 GGATCACAGC
* *
47494273 TCGATGACAATGCCATGACCCAGACATGATCTTACATGGGATCTCTTAAG
1 TCGATG-CAATGCCATGTCCCAGACATGGTCTTACATGGGATCTCTTAAG
* * *
47494323 TCGATGCCAATGTCATGTCCCAAACATGGTCTTACATGGGATCTCTTATG
1 TCGATG-CAATGCCATGTCCCAGACATGGTCTTACATGGGATCTCTTAAG
47494373 TCGATGCAAGTGCCATGTCCCAGACATGGTCTTACATGGGAT
1 TCGATGCAA-TGCCATGTCCCAGACATGGTCTTACATGGGAT
47494415 TTCATATCAA
Statistics
Matches: 83, Mismatches: 8, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
49 3 0.04
50 80 0.96
ACGTcount: A:0.26, C:0.24, G:0.22, T:0.28
Consensus pattern (49 bp):
TCGATGCAATGCCATGTCCCAGACATGGTCTTACATGGGATCTCTTAAG
Found at i:47496469 original size:29 final size:28
Alignment explanation
Indices: 47496437--47496531 Score: 91
Period size: 29 Copynumber: 3.3 Consensus size: 28
47496427 GGCCGTCTGT
* *
47496437 GACACACATCCGTATGATAATTCGTGTAC
1 GACACACA-CCGTATGATAGTTCGTGTGC
* * **
47496466 GACACACAACCCTATCATAGGCCGTGTGC
1 GACACAC-ACCGTATGATAGTTCGTGTGC
* *
47496495 GACACACGACCGTGTGATAGTTCGTGTGT
1 GACACAC-ACCGTATGATAGTTCGTGTGC
47496524 GACACACA
1 GACACACA
47496532 GTCTAGGCCA
Statistics
Matches: 52, Mismatches: 13, Indels: 3
0.76 0.19 0.04
Matches are distributed among these distances:
28 1 0.02
29 50 0.96
30 1 0.02
ACGTcount: A:0.28, C:0.27, G:0.22, T:0.22
Consensus pattern (28 bp):
GACACACACCGTATGATAGTTCGTGTGC
Found at i:47503105 original size:14 final size:14
Alignment explanation
Indices: 47503086--47503118 Score: 59
Period size: 14 Copynumber: 2.4 Consensus size: 14
47503076 CCTAATGTCG
47503086 TCAATCTTAGGGTT
1 TCAATCTTAGGGTT
47503100 TCAATCTTAGGGTT
1 TCAATCTTAGGGTT
47503114 T-AATC
1 TCAATC
47503119 ACACATAATT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 4 0.21
14 15 0.79
ACGTcount: A:0.24, C:0.15, G:0.18, T:0.42
Consensus pattern (14 bp):
TCAATCTTAGGGTT
Found at i:47506933 original size:27 final size:25
Alignment explanation
Indices: 47506875--47506934 Score: 75
Period size: 25 Copynumber: 2.3 Consensus size: 25
47506865 CATAAAAGCT
* * *
47506875 TTTCTTTCATATTTCGCTATAGGCT
1 TTTCTTTCATATTTCGCCAAAGGCG
47506900 TTTCTTTCATATTTCGCCACAAAGGCG
1 TTTCTTTCATATTTCG-C-CAAAGGCG
47506927 TTTCTTTC
1 TTTCTTTC
47506935 CTGACATGTT
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
25 16 0.53
26 1 0.03
27 13 0.43
ACGTcount: A:0.17, C:0.23, G:0.12, T:0.48
Consensus pattern (25 bp):
TTTCTTTCATATTTCGCCAAAGGCG
Found at i:47508609 original size:4 final size:4
Alignment explanation
Indices: 47508602--47508653 Score: 54
Period size: 4 Copynumber: 13.5 Consensus size: 4
47508592 TTTTCCTTTT
* * * *
47508602 TTTA TTTA TAT- TTTA TTTA TTAA TTAA TTTA TTTA TCTA TTTA -TTA
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA
47508648 TTTA TT
1 TTTA TT
47508654 ATTACTATTA
Statistics
Matches: 40, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
3 5 0.12
4 35 0.88
ACGTcount: A:0.29, C:0.02, G:0.00, T:0.69
Consensus pattern (4 bp):
TTTA
Found at i:47508648 original size:27 final size:27
Alignment explanation
Indices: 47508602--47508654 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
47508592 TTTTCCTTTT
47508602 TTTATTTATATTTTATTTATTAATTAA
1 TTTATTTATATTTTATTTATTAATTAA
* *
47508629 TTTATTTATCTATTTA-TTATTTATTA
1 TTTATTTATAT-TTTATTTATTAATTA
47508655 TTACTATTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
27 19 0.83
28 4 0.17
ACGTcount: A:0.30, C:0.02, G:0.00, T:0.68
Consensus pattern (27 bp):
TTTATTTATATTTTATTTATTAATTAA
Found at i:47508664 original size:16 final size:15
Alignment explanation
Indices: 47508614--47508664 Score: 52
Period size: 16 Copynumber: 3.3 Consensus size: 15
47508604 TATTTATATT
47508614 TTATTTATTAATTA-A
1 TTATTTATT-ATTATA
47508629 TTTATTTATCTATT-TA
1 -TTATTTAT-TATTATA
47508645 TTATTTATTATTACTA
1 TTATTTATTATTA-TA
47508661 TTAT
1 TTAT
47508665 AGACATTATT
Statistics
Matches: 31, Mismatches: 0, Indels: 8
0.79 0.00 0.21
Matches are distributed among these distances:
14 4 0.13
15 8 0.26
16 18 0.58
17 1 0.03
ACGTcount: A:0.31, C:0.04, G:0.00, T:0.65
Consensus pattern (15 bp):
TTATTTATTATTATA
Found at i:47509364 original size:12 final size:12
Alignment explanation
Indices: 47509347--47509567 Score: 72
Period size: 12 Copynumber: 18.5 Consensus size: 12
47509337 AGCATGACAA
47509347 TTTTATGTATAT
1 TTTTATGTATAT
47509359 TTTTATG-AT-T
1 TTTTATGTATAT
47509369 GTCTTGTGAT-TAATAT
1 -T-TT-T-ATGT-ATAT
47509385 TATTTTATGTATAT
1 T-TT-TATGTATAT
*
47509399 CTTTATGTAT-T
1 TTTTATGTATAT
47509410 TTTT-TGTATAT
1 TTTTATGTATAT
* * *
47509421 ATTTATGCATAAC
1 TTTTATGTAT-AT
*
47509434 TCTT-TGTATAT
1 TTTTATGTATAT
*
47509445 TCTTATGTAT-T
1 TTTTATGTATAT
47509456 ATTTTAT-TATAT
1 -TTTTATGTATAT
*
47509468 TGTTTCT-T-TAT
1 T-TTTATGTATAT
* * *
47509479 TGTCATAG-GTAT
1 TTTTAT-GTATAT
*
47509491 TTTTATGTACAT
1 TTTTATGTATAT
*
47509503 TTTTATGGATAT
1 TTTTATGTATAT
**
47509515 AATT-TGTATAT
1 TTTTATGTATAT
* *
47509526 TTTCACT-TATAA
1 TTTTA-TGTATAT
* * *
47509538 ATTTGTATATAT
1 TTTTATGTATAT
47509550 TTTTATGTATAT
1 TTTTATGTATAT
47509562 TTTTAT
1 TTTTAT
47509568 CTTTAATTTA
Statistics
Matches: 151, Mismatches: 36, Indels: 44
0.65 0.16 0.19
Matches are distributed among these distances:
10 8 0.05
11 34 0.23
12 86 0.57
13 7 0.05
14 8 0.05
15 7 0.05
16 1 0.01
ACGTcount: A:0.25, C:0.05, G:0.10, T:0.60
Consensus pattern (12 bp):
TTTTATGTATAT
Found at i:47509417 original size:22 final size:24
Alignment explanation
Indices: 47509382--47509467 Score: 83
Period size: 24 Copynumber: 3.7 Consensus size: 24
47509372 TTGTGATTAA
*
47509382 TATTATTTTATGTATATCTTTATG
1 TATTATTTTATGTATATATTTATG
47509406 TATT-TTTT-TGTATATATTTATG
1 TATTATTTTATGTATATATTTATG
* * *
47509428 CATAACTCTT-TGTATAT-TCTTATG
1 TATTA-TTTTATGTATATAT-TTATG
47509452 TATTATTTTAT-TATAT
1 TATTATTTTATGTATAT
47509468 TGTTTCTTTA
Statistics
Matches: 51, Mismatches: 7, Indels: 9
0.76 0.10 0.13
Matches are distributed among these distances:
22 15 0.29
23 13 0.25
24 23 0.45
ACGTcount: A:0.26, C:0.06, G:0.07, T:0.62
Consensus pattern (24 bp):
TATTATTTTATGTATATATTTATG
Found at i:47509560 original size:36 final size:36
Alignment explanation
Indices: 47509519--47509592 Score: 98
Period size: 36 Copynumber: 2.1 Consensus size: 36
47509509 GGATATAATT
*
47509519 TGTATATTTTCA-CTTATAAATTTGTATAT-ATTTTTA
1 TGTATATTTTCATCTT-T-AATTTATATATAATTTTTA
*
47509555 TGTATATTTTTATCTTTAATTTATATATAATTTTTA
1 TGTATATTTTCATCTTTAATTTATATATAATTTTTA
47509591 TG
1 TG
47509593 AACATTGTTT
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
35 10 0.29
36 21 0.62
37 3 0.09
ACGTcount: A:0.30, C:0.04, G:0.05, T:0.61
Consensus pattern (36 bp):
TGTATATTTTCATCTTTAATTTATATATAATTTTTA
Found at i:47510260 original size:37 final size:37
Alignment explanation
Indices: 47510199--47510344 Score: 242
Period size: 37 Copynumber: 4.0 Consensus size: 37
47510189 TACGTATGAT
* *
47510199 CACTTATCAC-TTG-TCCCTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
*
47510234 CACCTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
47510271 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
*
47510308 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
47510345 TAAAGCTATC
Statistics
Matches: 104, Mismatches: 5, Indels: 2
0.94 0.05 0.02
Matches are distributed among these distances:
35 9 0.09
36 3 0.03
37 92 0.88
ACGTcount: A:0.25, C:0.22, G:0.16, T:0.37
Consensus pattern (37 bp):
CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
Found at i:47510361 original size:46 final size:46
Alignment explanation
Indices: 47510308--47510576 Score: 340
Period size: 46 Copynumber: 5.6 Consensus size: 46
47510298 TAAGTGTAGC
* **
47510308 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGCTAAAGCTAT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
* *
47510354 CACTTATCACTTTGTCTCTTGATCAGATAAGTATAGCCGAAGCTAT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
47510400 CACTTATCACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
1 CACTTATCAC---T---TTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
47510452 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
* ** *
47510498 TACTTATCACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTAC
1 CACTTATCAC--T----TTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
*
47510550 CACTTATCACTTTATCACTTGATCAGA
1 CACTTATCACTTTGTCACTTGATCAGA
47510577 AGTACTCAAA
Statistics
Matches: 200, Mismatches: 11, Indels: 24
0.85 0.05 0.10
Matches are distributed among these distances:
46 112 0.56
48 1 0.00
49 2 0.01
50 1 0.00
52 84 0.42
ACGTcount: A:0.28, C:0.22, G:0.14, T:0.35
Consensus pattern (46 bp):
CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
Found at i:47510427 original size:52 final size:52
Alignment explanation
Indices: 47510351--47510570 Score: 308
Period size: 52 Copynumber: 4.3 Consensus size: 52
47510341 TAGCTAAAGC
* * *
47510351 TATCACTTATCACTTTGTCTCTTGATCAGATAAGTATAGCCGAAGCTATCACT
1 TATCACTTTTCAC-TTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACT
47510404 TATCACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACT
1 TATCACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACT
*
47510456 TATCAC---T---TTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATTACT
1 TATCACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACT
* ** *
47510502 TATCACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTACCACT
1 TATCACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACT
47510554 TATCACTTTATCACTTG
1 TATCACTTT-TCACTTG
47510571 ATCAGAAGTA
Statistics
Matches: 150, Mismatches: 10, Indels: 14
0.86 0.06 0.08
Matches are distributed among these distances:
46 44 0.29
49 1 0.01
52 87 0.58
53 18 0.12
ACGTcount: A:0.28, C:0.23, G:0.14, T:0.35
Consensus pattern (52 bp):
TATCACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACT
Found at i:47510473 original size:98 final size:98
Alignment explanation
Indices: 47510308--47510576 Score: 439
Period size: 98 Copynumber: 2.7 Consensus size: 98
47510298 TAAGTGTAGC
* * *
47510308 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGCTAAAGCTATCACTTATCACTTTGTCTCT
1 CACTTTTCAC-TTGTCACTTGATCAGATAAGTGTAGCTAAAGCTATCACTTATCACTTTGTCACT
47510373 TGATCAGATAAGTATAGCCGAAGCTATCACTTAT
65 TGATCAGATAAGTATAGCCGAAGCTATCACTTAT
**
47510407 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACTTATCACTTTGTCACTT
1 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTATCACTTATCACTTTGTCACTT
* *
47510472 GATCAGATAAGTGTAGCCGAAGCTATTACTTAT
66 GATCAGATAAGTATAGCCGAAGCTATCACTTAT
* * *
47510505 CACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTTATCACTT
1 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTATCACTTATCACTTTGTCACTT
47510570 GATCAGA
66 GATCAGA
47510577 AGTACTCAAA
Statistics
Matches: 158, Mismatches: 12, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
98 149 0.94
99 9 0.06
ACGTcount: A:0.28, C:0.22, G:0.14, T:0.35
Consensus pattern (98 bp):
CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTATCACTTATCACTTTGTCACTT
GATCAGATAAGTATAGCCGAAGCTATCACTTAT
Found at i:47517423 original size:32 final size:31
Alignment explanation
Indices: 47517367--47517427 Score: 86
Period size: 32 Copynumber: 1.9 Consensus size: 31
47517357 AGCATTTACT
47517367 AAACATTGGAAATTAGATAACACTAGTTTAAA
1 AAACATTGGAAATTAGATAACACTA-TTTAAA
* **
47517399 AAACCTTGGAAATTAGATGTCACTATTTA
1 AAACATTGGAAATTAGATAACACTATTTA
47517428 CAAATGCTTC
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
31 4 0.15
32 22 0.85
ACGTcount: A:0.44, C:0.11, G:0.13, T:0.31
Consensus pattern (31 bp):
AAACATTGGAAATTAGATAACACTATTTAAA
Found at i:47521555 original size:61 final size:61
Alignment explanation
Indices: 47521460--47521582 Score: 237
Period size: 61 Copynumber: 2.0 Consensus size: 61
47521450 ATTTGCCCAA
47521460 TGGTAACTTTTTTTCTTATATAAGCCTAAGTCATTTTCCACTCTTTTCACTCAAATCTAAT
1 TGGTAACTTTTTTTCTTATATAAGCCTAAGTCATTTTCCACTCTTTTCACTCAAATCTAAT
*
47521521 TGGTAACTTTTTTTCTTATATGAGCCTAAGTCATTTTCCACTCTTTTCACTCAAATCTAAT
1 TGGTAACTTTTTTTCTTATATAAGCCTAAGTCATTTTCCACTCTTTTCACTCAAATCTAAT
47521582 T
1 T
47521583 CTCTTCATTC
Statistics
Matches: 61, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
61 61 1.00
ACGTcount: A:0.25, C:0.21, G:0.07, T:0.46
Consensus pattern (61 bp):
TGGTAACTTTTTTTCTTATATAAGCCTAAGTCATTTTCCACTCTTTTCACTCAAATCTAAT
Found at i:47523674 original size:43 final size:43
Alignment explanation
Indices: 47523605--47523696 Score: 98
Period size: 43 Copynumber: 2.1 Consensus size: 43
47523595 AACTGAACGT
* * *
47523605 ATTTTCTGTTGACATGTCAAGGAAAGCACGCCCAGCTGGACT-C
1 ATTTTCTGCTAACATGTCAAGGAAAGCACGCCCAACTGGA-TGC
* * *
47523648 ATTTTCTGCTAACATGT-TAGGTAAAGCGCGTCCAACTGGATGC
1 ATTTTCTGCTAACATGTCAAGG-AAAGCACGCCCAACTGGATGC
47523691 ATTTTC
1 ATTTTC
47523697 CCTGACATTT
Statistics
Matches: 41, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
42 4 0.10
43 37 0.90
ACGTcount: A:0.25, C:0.23, G:0.22, T:0.30
Consensus pattern (43 bp):
ATTTTCTGCTAACATGTCAAGGAAAGCACGCCCAACTGGATGC
Found at i:47526254 original size:48 final size:48
Alignment explanation
Indices: 47526040--47526268 Score: 180
Period size: 48 Copynumber: 4.8 Consensus size: 48
47526030 GGGTTGATGA
* * * * * *
47526040 GATCCCGTATAAGACCATATCTAGGAAATGGTATCGGCATTGATATGT
1 GATCCCATGTAAGACCATATCTGGGACATGGCATCGGCATCGATATGT
* * * * *
47526088 GATCCCATGTAAGACCATGTCTGAGACATGTCATTGGCATCGATATGA
1 GATCCCATGTAAGACCATATCTGGGACATGGCATCGGCATCGATATGT
* * * * *
47526136 GAACATCATGTAAGACCATAGCT-GG--AT--TATCGGCTTCGATATGTGT
1 GATC-CCATGTAAGACCATATCTGGGACATGGCATCGGCATCGATA--TGT
* * * * *
47526182 GATCCCATGTAAGAGCGTGTCTGGGACATGGCATTGGCATCGATAAGT
1 GATCCCATGTAAGACCATATCTGGGACATGGCATCGGCATCGATATGT
* * *
47526230 GGTCCCATGTAAGACCATATCTGGGATATGGCAACGGCA
1 GATCCCATGTAAGACCATATCTGGGACATGGCATCGGCA
47526269 CCCTACTATG
Statistics
Matches: 136, Mismatches: 37, Indels: 16
0.72 0.20 0.08
Matches are distributed among these distances:
44 11 0.08
45 13 0.10
46 9 0.07
48 77 0.57
49 15 0.11
50 11 0.08
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.27
Consensus pattern (48 bp):
GATCCCATGTAAGACCATATCTGGGACATGGCATCGGCATCGATATGT
Found at i:47531279 original size:46 final size:45
Alignment explanation
Indices: 47531193--47531411 Score: 190
Period size: 46 Copynumber: 4.7 Consensus size: 45
47531183 AGGGTAAGGT
*
47531193 GTCGATGCCATGTCCCAGACATGGTTTTACACTGACTATCATCTCATA
1 GTCGATG-CATGTCCCAGACAT-GTCTTACACTGACTATCATCTCA-A
*
47531241 GTCGATGCATGTCCCAGACATGTCTTACACTGACTATCATCTCGAG
1 GTCGATGCATGTCCCAGACATGTCTTACACTGACTATCATCTC-AA
* * *
47531287 GTCGGTGCATGTCCCAAACATATCTTACACT-AGC-ACTCATCTCAA
1 GTCGATGCATGTCCCAGACATGTCTTACACTGA-CTA-TCATCTCAA
* * * * * ***
47531332 TGCCAATGCCATGTCCCAGACATGGTCTTACACTGGCTTTCATAATGTG
1 -GTCGATG-CATGTCCCAGACAT-GTCTTACACTGACTATCAT-CTCAA
* * *
47531381 GCCAACGCATGTCCCAGACATGTCTTACACT
1 GTCGATGCATGTCCCAGACATGTCTTACACT
47531412 AGCTCACATA
Statistics
Matches: 144, Mismatches: 18, Indels: 20
0.79 0.10 0.11
Matches are distributed among these distances:
45 3 0.02
46 71 0.49
47 42 0.29
48 27 0.19
49 1 0.01
ACGTcount: A:0.25, C:0.29, G:0.17, T:0.28
Consensus pattern (45 bp):
GTCGATGCATGTCCCAGACATGTCTTACACTGACTATCATCTCAA
Found at i:47533810 original size:79 final size:81
Alignment explanation
Indices: 47533674--47533858 Score: 227
Period size: 79 Copynumber: 2.3 Consensus size: 81
47533664 TTGAATGATG
* *
47533674 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAAT
47533738 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
47533753 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
47533815 ATTGTGCGAGTTACTATA
64 ATTGTGCGAGATACTATA
* *
47533833 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
47533859 AACGAGTAGC
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 1 0.01
79 57 0.63
80 33 0.36
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAAT
TGTGCGAGATACTATA
Found at i:47533872 original size:40 final size:40
Alignment explanation
Indices: 47533675--47533858 Score: 207
Period size: 40 Copynumber: 4.6 Consensus size: 40
47533665 TGAATGATGT
* * * *
47533675 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* * *
47533715 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
47533755 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
* *
47533793 TCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
47533834 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
47533859 AACGAGTAGC
Statistics
Matches: 124, Mismatches: 13, Indels: 14
0.82 0.09 0.09
Matches are distributed among these distances:
39 35 0.28
40 79 0.64
41 10 0.08
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:47533880 original size:79 final size:79
Alignment explanation
Indices: 47533727--47533891 Score: 201
Period size: 79 Copynumber: 2.1 Consensus size: 79
47533717 GGACTAAGAT
* * **
47533727 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
*
47533792 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
47533806 CCGAAGGCAATTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCAATTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C
* *
47533869 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
47533885 CCGAAGG
1 CCGAAGG
47533892 TACGTGATTT
Statistics
Matches: 74, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
78 2 0.03
79 47 0.64
80 25 0.34
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:47543943 original size:13 final size:13
Alignment explanation
Indices: 47543927--47543959 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
47543917 TTCAATTAAA
*
47543927 TTAGTTAATTAGT
1 TTAGATAATTAGT
47543940 TTAGATAATTAGT
1 TTAGATAATTAGT
47543953 TTA-ATAA
1 TTAGATAA
47543960 ACAAACCCTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.39, C:0.00, G:0.12, T:0.48
Consensus pattern (13 bp):
TTAGATAATTAGT
Found at i:47547764 original size:5 final size:5
Alignment explanation
Indices: 47547754--47547808 Score: 51
Period size: 5 Copynumber: 10.6 Consensus size: 5
47547744 CCCACTTTGA
*
47547754 TTTAT TTTAT TTTATT TTTATT TTTAT TTTCAT TTCAAT TTTA- -TTAT
1 TTTAT TTTAT TTTA-T TTTA-T TTTAT TTT-AT TT-TAT TTTAT TTTAT
47547801 TTTAT TTT
1 TTTAT TTT
47547809 GAAAGACATA
Statistics
Matches: 43, Mismatches: 2, Indels: 10
0.78 0.04 0.18
Matches are distributed among these distances:
3 3 0.07
5 21 0.49
6 19 0.44
ACGTcount: A:0.20, C:0.04, G:0.00, T:0.76
Consensus pattern (5 bp):
TTTAT
Found at i:47549207 original size:30 final size:30
Alignment explanation
Indices: 47549173--47549233 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
47549163 TTCCCGAGCC
47549173 TAGGGGAAAAAGTGTAAATATGCAAAAGTT
1 TAGGGGAAAAAGTGTAAATATGCAAAAGTT
* * * * *
47549203 TAGGGGCAAAATTGTAATTTTGCCAAAGTT
1 TAGGGGAAAAAGTGTAAATATGCAAAAGTT
47549233 T
1 T
47549234 GAGTTAAGGA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.39, C:0.07, G:0.25, T:0.30
Consensus pattern (30 bp):
TAGGGGAAAAAGTGTAAATATGCAAAAGTT
Found at i:47549880 original size:63 final size:66
Alignment explanation
Indices: 47549737--47549883 Score: 169
Period size: 63 Copynumber: 2.2 Consensus size: 66
47549727 AGTGCACATT
* * *
47549737 ATGTGTACAAGAGAGCTACGAGACATTATGATGTAGCTAGGTCGCATGGGTGATACTATGTGTAC
1 ATGTGTACAAGAGAGCTACGAGA-ATTATAATG-AGCTAGGTCACATGGGTGATACTAAGTGTAC
47549802 ACC
64 ACC
* * *
47549805 ATGTAG-ATAAGAGAGCTACGAG-A-TA-AACTG-GCTAGGTCACATGGGTGGTACTAAGTGTTC
1 ATGT-GTACAAGAGAGCTACGAGAATTATAA-TGAGCTAGGTCACATGGGTGATACTAAGTGTAC
47549865 ACC
64 ACC
47549868 ATGTGTACAAGAGAGC
1 ATGTGTACAAGAGAGC
47549884 CAAAATTATG
Statistics
Matches: 69, Mismatches: 7, Indels: 11
0.79 0.08 0.13
Matches are distributed among these distances:
62 1 0.01
63 42 0.61
64 1 0.01
65 4 0.06
66 1 0.01
68 19 0.28
69 1 0.01
ACGTcount: A:0.31, C:0.16, G:0.29, T:0.24
Consensus pattern (66 bp):
ATGTGTACAAGAGAGCTACGAGAATTATAATGAGCTAGGTCACATGGGTGATACTAAGTGTACAC
C
Found at i:47557138 original size:48 final size:48
Alignment explanation
Indices: 47557058--47557280 Score: 199
Period size: 48 Copynumber: 4.7 Consensus size: 48
47557048 GGGTTGATGA
* * * * *
47557058 GATCCCGTATAAGACCATATCTGGGATATGGCATCGGCATCGGTATGT
1 GATCCCATGTAAGACCATGTCTGGGACATGGCATCGGCATCGATATGT
* * *
47557106 GATCTCATGTAAGACCATGTCTGGGACATGGCATCGGCATCGGTATGA
1 GATCCCATGTAAGACCATGTCTGGGACATGGCATCGGCATCGATATGT
* * *
47557154 G-TACACCGTGTAAGACCATAGT-TGGG-C-T---ATCAGCTTCGATATGTGT
1 GAT-C-CCATGTAAGACCAT-GTCTGGGACATGGCATCGGCATCGATA--TGT
* * *
47557200 GATCCCATGTAAGAGCATGTCTGGGACATGGCATTGGCATCGATAAGT
1 GATCCCATGTAAGACCATGTCTGGGACATGGCATCGGCATCGATATGT
* * *
47557248 GGTCCCATGTAAGACCATATCTGGGATATGGCA
1 GATCCCATGTAAGACCATGTCTGGGACATGGCA
47557281 ATGACACCCT
Statistics
Matches: 141, Mismatches: 22, Indels: 24
0.75 0.12 0.13
Matches are distributed among these distances:
44 12 0.09
45 16 0.11
46 5 0.04
47 4 0.03
48 76 0.54
49 16 0.11
50 12 0.09
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.26
Consensus pattern (48 bp):
GATCCCATGTAAGACCATGTCTGGGACATGGCATCGGCATCGATATGT
Found at i:47563839 original size:79 final size:82
Alignment explanation
Indices: 47563728--47563912 Score: 238
Period size: 79 Copynumber: 2.3 Consensus size: 82
47563718 GCTACTCGTT
* *
47563728 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
* *
47563791 GGATTTAGTAAC-TCGCA
65 GGATATAGTAACTTAGCA
* **
47563808 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
* *
47563871 GATATGGTCACTTAGCA
66 GATATAGTAACTTAGCA
47563888 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
47563913 CATCATTCAA
Statistics
Matches: 92, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 3 0.03
79 55 0.60
80 34 0.37
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (82 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
GATATAGTAACTTAGCA
Found at i:47563912 original size:40 final size:40
Alignment explanation
Indices: 47563709--47563912 Score: 238
Period size: 40 Copynumber: 5.1 Consensus size: 40
47563699 CGGAATTTAA
** *
47563709 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
47563749 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
47563789 CCGGATTTAGTAACTCGCACAAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
47563828 CCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
47563868 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
47563908 CCGGA
1 CCGGA
47563913 CATCATTCAA
Statistics
Matches: 141, Mismatches: 16, Indels: 14
0.82 0.09 0.08
Matches are distributed among these distances:
38 2 0.01
39 33 0.23
40 94 0.67
41 12 0.09
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:47571621 original size:39 final size:40
Alignment explanation
Indices: 47571576--47571758 Score: 207
Period size: 39 Copynumber: 4.6 Consensus size: 40
47571566 GCTCCTCGTT
*
47571576 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
*
47571616 C-AATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGG-TTATAGTAACTCGCA
* *
47571655 CAAATGCCTTCGGG-CTTAGCCCGG-AATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCGCA
* * * * *
47571694 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGTTATAGTAAC-TCGCA
47571735 CAAA-GCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGG
47571759 ACATCATTCA
Statistics
Matches: 122, Mismatches: 12, Indels: 18
0.80 0.08 0.12
Matches are distributed among these distances:
38 2 0.02
39 65 0.53
40 43 0.35
41 12 0.10
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:47571703 original size:79 final size:81
Alignment explanation
Indices: 47571576--47571759 Score: 227
Period size: 79 Copynumber: 2.3 Consensus size: 81
47571566 GCTCCTCGTT
* *
47571576 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAATGCCTTCGGGA-CTTAACCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAATGCCTTC-GGATCTTAACCCG
* *
47571639 GATTTAGTAAC-TCGCA
65 GATATAGTAACTTAGCA
* **
47571655 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCAC-AATGCCTTCGGATCTTAACCCG
* *
47571718 GATATGGTCACTTAGCA
65 GATATAGTAACTTAGCA
47571735 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
47571760 CATCATTCAA
Statistics
Matches: 91, Mismatches: 9, Indels: 9
0.83 0.08 0.08
Matches are distributed among these distances:
78 24 0.26
79 48 0.53
80 19 0.21
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (81 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAATGCCTTCGGATCTTAACCCGG
ATATAGTAACTTAGCA
Found at i:47580380 original size:48 final size:48
Alignment explanation
Indices: 47580253--47580824 Score: 432
Period size: 48 Copynumber: 11.8 Consensus size: 48
47580243 GTAAAATGTA
* * * * **
47580253 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATATCGATGTT
1 GATGCCATGTTCCAAACATGGTCTTACACTAGC-C-CACATATCGATGCC
* * * * * *
47580303 GATGCGAAGTTTCAAACATCGTCTTACACTAGCCCACATGTCGAGGCC
1 GATGCCATGTTCCAAACATGGTCTTACACTAGCCCACATATCGATGCC
* * * * * *
47580351 AATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATATCGAGGCT
1 GATGCCATGTTCCAAACATGGTCTTACACTAGC-C-CACATATCGATGCC
* * * * * * *
47580401 AATGCTATGTCCCAAACATGGTCTTACACTATCACTCATATCAATGCC
1 GATGCCATGTTCCAAACATGGTCTTACACTAGCCCACATATCGATGCC
* * * *
47580449 GATGCCATGTTCCAAACATGGTCTTAAACTGGCTCACATATCAATGCC
1 GATGCCATGTTCCAAACATGGTCTTACACTAGCCCACATATCGATGCC
* * * * ** *
47580497 GATGCCATGTTCTAGATATGGTCTTACACTGGTTCACATATCGATGCT
1 GATGCCATGTTCCAAACATGGTCTTACACTAGCCCACATATCGATGCC
** * * *
47580545 GATGCCATGTTTTAAACATGGTCTTACACTAGCTCTCATAT--ATTGCG
1 GATGCCATGTTCCAAACATGGTCTTACACTAGCCCACATATCGA-TGCC
* * * * * * * * * *
47580592 GCTGTTACATG-TCCAGATATGGTCTTACAATATCTCTCATATCAATGCT
1 GATG--CCATGTTCCAAACATGGTCTTACACTAGCCCACATATCGATGCC
* * **** * *
47580641 GATGCCATGTTCTAAACATGGTCATACACTAGTTTTCATATCAATGTC
1 GATGCCATGTTCCAAACATGGTCTTACACTAGCCCACATATCGATGCC
* * *
47580689 GATGCCATGTTCTAAACATGGTCTTACACT-GACTCACATATCAATGCC
1 GATGCCATGTTCCAAACATGGTCTTACACTAG-CCCACATATCGATGCC
* * *
47580737 GATGCCATGTTCCAAACATTGTCTTACACTGGCTCACATATCGATGCC
1 GATGCCATGTTCCAAACATGGTCTTACACTAGCCCACATATCGATGCC
* * *
47580785 GATGCCATGTTTCAAACATGGTATTACACTAGCTCACATA
1 GATGCCATGTTCCAAACATGGTCTTACACTAGCCCACATA
47580825 ACCCTAGTAT
Statistics
Matches: 426, Mismatches: 86, Indels: 22
0.80 0.16 0.04
Matches are distributed among these distances:
46 1 0.00
47 11 0.03
48 333 0.78
49 13 0.03
50 68 0.16
ACGTcount: A:0.27, C:0.25, G:0.17, T:0.31
Consensus pattern (48 bp):
GATGCCATGTTCCAAACATGGTCTTACACTAGCCCACATATCGATGCC
Found at i:47580615 original size:144 final size:144
Alignment explanation
Indices: 47580253--47580824 Score: 517
Period size: 144 Copynumber: 3.9 Consensus size: 144
47580243 GTAAAATGTA
* * * * * ** * * *
47580253 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATATCGATGTTGATGCGAAGTTTCAA
1 GATGCCATGTTCTAAACATGGTCTTACACTAGCTCTC--ATATCAATGCCGATGCCATGTTCCAA
* * * * * * * * * *
47580318 ACATCGTCTTACACTAGCCCACATGTCGAGGCCAATGCCATGTCCCAGACATGGTCTTACACTAG
64 ACATGGTCTTAAACTGGCTCACATATCAATGCCGATGCCATGTTCTAGACATGGTCTTACACT-G
* * *
47580383 CTCTCATATATCGAGGCT
128 GT-TCACATATCGATGCT
* * * * * *
47580401 AATGCTATGTCCCAAACATGGTCTTACACTATCACTCATATCAATGCCGATGCCATGTTCCAAAC
1 GATGCCATGTTCTAAACATGGTCTTACACTAGCTCTCATATCAATGCCGATGCCATGTTCCAAAC
*
47580466 ATGGTCTTAAACTGGCTCACATATCAATGCCGATGCCATGTTCTAGATATGGTCTTACACTGGTT
66 ATGGTCTTAAACTGGCTCACATATCAATGCCGATGCCATGTTCTAGACATGGTCTTACACTGGTT
47580531 CACATATCGATGCT
131 CACATATCGATGCT
* * * * * *
47580545 GATGCCATGTTTTAAACATGGTCTTACACTAGCTCTCATAT-ATTGCGGCTGTTACATG-TCCAG
1 GATGCCATGTTCTAAACATGGTCTTACACTAGCTCTCATATCAATGCCGATG--CCATGTTCCAA
* ** * * * * *
47580608 ATATGGTCTTACAA-TATCTCTCATATCAATGCTGATGCCATGTTCTAAACATGGTCATACACTA
64 ACATGGTCTTA-AACTGGCTCACATATCAATGCCGATGCCATGTTCTAGACATGGTCTTACACTG
** *
47580672 GTTTTCATATCAATG-T
128 GTTCACATATCGATGCT
*
47580688 CGATGCCATGTTCTAAACATGGTCTTACACT-GACTCACATATCAATGCCGATGCCATGTTCCAA
1 -GATGCCATGTTCTAAACATGGTCTTACACTAG-CTCTCATATCAATGCCGATGCCATGTTCCAA
* * * * * *
47580752 ACATTGTCTTACACTGGCTCACATATCGATGCCGATGCCATGTT-TCAAACATGGTATTACACTA
64 ACATGGTCTTAAACTGGCTCACATATCAATGCCGATGCCATGTTCT-AGACATGGTCTTACACTG
*
47580816 GCTCACATA
128 GTTCACATA
47580825 ACCCTAGTAT
Statistics
Matches: 345, Mismatches: 70, Indels: 22
0.79 0.16 0.05
Matches are distributed among these distances:
143 15 0.04
144 212 0.61
145 15 0.04
146 72 0.21
148 31 0.09
ACGTcount: A:0.27, C:0.25, G:0.17, T:0.31
Consensus pattern (144 bp):
GATGCCATGTTCTAAACATGGTCTTACACTAGCTCTCATATCAATGCCGATGCCATGTTCCAAAC
ATGGTCTTAAACTGGCTCACATATCAATGCCGATGCCATGTTCTAGACATGGTCTTACACTGGTT
CACATATCGATGCT
Found at i:47580802 original size:96 final size:95
Alignment explanation
Indices: 47580253--47580824 Score: 493
Period size: 96 Copynumber: 5.9 Consensus size: 95
47580243 GTAAAATGTA
* * * ** * *
47580253 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATATCGATGTTGATGCGAAGTTTCAA
1 GATGCCATGTTCCAAACATGGTCTTACACTGG--CTCACATATCGATGCCGATGCCATG-TTCAA
* * * * *
47580318 ACATCGTCTTACACTAGCCCACATGTCGAGGCC
63 ACATGGTCTTACACTAGCTCACATATCAATGCC
* * * * * * ** * *
47580351 AATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATATCGAGGCTAATGCTATGTCCCAA
1 GATGCCATGTTCCAAACATGGTCTTACACT-G-GCTCACATATCGATGCCGATGCCATGT-TCAA
* * *
47580416 ACATGGTCTTACACTATCACTCATATCAATGCC
63 ACATGGTCTTACACTAGCTCACATATCAATGCC
* * * *
47580449 GATGCCATGTTCCAAACATGGTCTTAAACTGGCTCACATATCAATGCCGATGCCATGTTCTAGAT
1 GATGCCATGTTCCAAACATGGTCTTACACTGGCTCACATATCGATGCCGATGCCATGTTC-AAAC
* * * *
47580514 ATGGTCTTACACTGGTTCACATATCGATGCT
65 ATGGTCTTACACTAGCTCACATATCAATGCC
** * * * * * * *
47580545 GATGCCATGTTTTAAACATGGTCTTACACTAGCTCTCATAT--ATTGCGGCTGTTACATGTCCAG
1 GATGCCATGTTCCAAACATGGTCTTACACTGGCTCACATATCGA-TGCCGATG--CCATGTTCAA
* * * * *
47580608 ATATGGTCTTACAATATCTCTCATATCAATGCT
63 ACATGGTCTTACACTAGCTCACATATCAATGCC
* * * * ** * *
47580641 GATGCCATGTTCTAAACATGGTCATACACTAGTTTTCATATCAATGTCGATGCCATGTTCTAAAC
1 GATGCCATGTTCCAAACATGGTCTTACACTGGCTCACATATCGATGCCGATGCCATGTTC-AAAC
47580706 ATGGTCTTACACT-GACTCACATATCAATGCC
65 ATGGTCTTACACTAG-CTCACATATCAATGCC
*
47580737 GATGCCATGTTCCAAACATTGTCTTACACTGGCTCACATATCGATGCCGATGCCATGTTTCAAAC
1 GATGCCATGTTCCAAACATGGTCTTACACTGGCTCACATATCGATGCCGATGCCATG-TTCAAAC
*
47580802 ATGGTATTACACTAGCTCACATA
65 ATGGTCTTACACTAGCTCACATA
47580825 ACCCTAGTAT
Statistics
Matches: 385, Mismatches: 76, Indels: 28
0.79 0.16 0.06
Matches are distributed among these distances:
94 1 0.00
95 13 0.03
96 248 0.64
97 17 0.04
98 105 0.27
99 1 0.00
ACGTcount: A:0.27, C:0.25, G:0.17, T:0.31
Consensus pattern (95 bp):
GATGCCATGTTCCAAACATGGTCTTACACTGGCTCACATATCGATGCCGATGCCATGTTCAAACA
TGGTCTTACACTAGCTCACATATCAATGCC
Found at i:47585282 original size:32 final size:32
Alignment explanation
Indices: 47585245--47585307 Score: 126
Period size: 32 Copynumber: 2.0 Consensus size: 32
47585235 GGTGCAAAAG
47585245 TAGAGTTCTATAAGTTAAAGGTATCAACTAGC
1 TAGAGTTCTATAAGTTAAAGGTATCAACTAGC
47585277 TAGAGTTCTATAAGTTAAAGGTATCAACTAG
1 TAGAGTTCTATAAGTTAAAGGTATCAACTAG
47585308 TTATGAAATT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 31 1.00
ACGTcount: A:0.38, C:0.11, G:0.19, T:0.32
Consensus pattern (32 bp):
TAGAGTTCTATAAGTTAAAGGTATCAACTAGC
Found at i:47587430 original size:24 final size:24
Alignment explanation
Indices: 47587380--47587433 Score: 67
Period size: 24 Copynumber: 2.2 Consensus size: 24
47587370 AATCGAATTT
*
47587380 GCACACATAGTGCTCGTCACACTC
1 GCACACATAGTGCTAGTCACACTC
47587404 GCACACATAGTGCCATAG-CACAC-C
1 GCACACATAGTG-C-TAGTCACACTC
47587428 GCACAC
1 GCACAC
47587434 TCAGTGCATT
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
24 19 0.70
25 6 0.22
26 2 0.07
ACGTcount: A:0.30, C:0.39, G:0.17, T:0.15
Consensus pattern (24 bp):
GCACACATAGTGCTAGTCACACTC
Found at i:47590292 original size:16 final size:16
Alignment explanation
Indices: 47590271--47590306 Score: 72
Period size: 16 Copynumber: 2.2 Consensus size: 16
47590261 GGTATTAATA
47590271 AGGTTGAATGCATTTG
1 AGGTTGAATGCATTTG
47590287 AGGTTGAATGCATTTG
1 AGGTTGAATGCATTTG
47590303 AGGT
1 AGGT
47590307 GCCTTGTTGG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.25, C:0.06, G:0.33, T:0.36
Consensus pattern (16 bp):
AGGTTGAATGCATTTG
Found at i:47593816 original size:38 final size:38
Alignment explanation
Indices: 47593755--47593855 Score: 121
Period size: 38 Copynumber: 2.6 Consensus size: 38
47593745 ATTTGATGTG
* *
47593755 TATCCGGGCTTAAAGACCCGCAGGCTTCGTGCTGGTAAAA
1 TATCCGGG-TTAAA-TCCCGCAGGCTTCGTGCTAGTAAAA
**
47593795 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTAGTATTA
1 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTAGTAAAA
** *
47593833 TATCCCAGATAAATCCCGCAGGC
1 TATCCGGGTTAAATCCCGCAGGC
47593856 CTAGTGTTGG
Statistics
Matches: 54, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
38 41 0.76
39 5 0.09
40 8 0.15
ACGTcount: A:0.25, C:0.27, G:0.24, T:0.25
Consensus pattern (38 bp):
TATCCGGGTTAAATCCCGCAGGCTTCGTGCTAGTAAAA
Found at i:47593919 original size:43 final size:43
Alignment explanation
Indices: 47593871--47594037 Score: 190
Period size: 43 Copynumber: 3.6 Consensus size: 43
47593861 GTTGGTATTA
*
47593871 TATTCGAGCCTTCGTGCCTAACAGGCTTCGTGCCGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAACAGGCTTCGTGCCGGTGATGTG
*
47593914 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCAGGCTTCGTGCCAGTGATGTG
1 TATTCGGGCCTTCGTGCCTA--A----------CAGGCTTCGTGCCGGTGATGTG
*
47593969 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAACAGGCTTCGTGCCGGTGATGTG
*
47594012 TATTCGGGCCTTCGTGCCTAGCAGGC
1 TATTCGGGCCTTCGTGCCTAACAGGC
47594038 GTAATGTCGG
Statistics
Matches: 108, Mismatches: 4, Indels: 24
0.79 0.03 0.18
Matches are distributed among these distances:
43 66 0.61
45 1 0.01
55 41 0.38
ACGTcount: A:0.11, C:0.27, G:0.32, T:0.29
Consensus pattern (43 bp):
TATTCGGGCCTTCGTGCCTAACAGGCTTCGTGCCGGTGATGTG
Found at i:47593952 original size:12 final size:12
Alignment explanation
Indices: 47593935--47593961 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
47593925 TCGTGCCTAG
47593935 CAGGCTTCGTGC
1 CAGGCTTCGTGC
47593947 CAGGCTTCGTGC
1 CAGGCTTCGTGC
47593959 CAG
1 CAG
47593962 TGATGTGTAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.11, C:0.33, G:0.33, T:0.22
Consensus pattern (12 bp):
CAGGCTTCGTGC
Found at i:47593968 original size:55 final size:55
Alignment explanation
Indices: 47593892--47594002 Score: 213
Period size: 55 Copynumber: 2.0 Consensus size: 55
47593882 TCGTGCCTAA
*
47593892 CAGGCTTCGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGC
1 CAGGCTTCGTGCCAGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGC
47593947 CAGGCTTCGTGCCAGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGC
1 CAGGCTTCGTGCCAGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGC
47594002 C
1 C
47594003 GGTGATGTGT
Statistics
Matches: 55, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
55 55 1.00
ACGTcount: A:0.10, C:0.28, G:0.33, T:0.29
Consensus pattern (55 bp):
CAGGCTTCGTGCCAGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGC
Found at i:47593986 original size:27 final size:27
Alignment explanation
Indices: 47593896--47593986 Score: 73
Period size: 27 Copynumber: 3.3 Consensus size: 27
47593886 GCCTAACAGG
*
47593896 CTTCGTGCCGGTGATGTGTATTCGGGC
1 CTTCGTGCCAGTGATGTGTATTCGGGC
* * *
47593923 CTTCGTGCCTAG-CA-G-G-CTTCGTGCCAGG
1 CTTCGTGCC-AGTGATGTGTATTCG-G---GC
47593951 CTTCGTGCCAGTGATGTGTATTCGGGC
1 CTTCGTGCCAGTGATGTGTATTCGGGC
47593978 CTTCGTGCC
1 CTTCGTGCC
47593987 TAGCAGGCTT
Statistics
Matches: 48, Mismatches: 7, Indels: 18
0.66 0.10 0.25
Matches are distributed among these distances:
24 4 0.08
25 2 0.04
26 1 0.02
27 22 0.46
28 12 0.25
29 1 0.02
30 2 0.04
31 4 0.08
ACGTcount: A:0.09, C:0.27, G:0.33, T:0.31
Consensus pattern (27 bp):
CTTCGTGCCAGTGATGTGTATTCGGGC
Found at i:47594049 original size:43 final size:43
Alignment explanation
Indices: 47593956--47594050 Score: 145
Period size: 43 Copynumber: 2.2 Consensus size: 43
47593946 CCAGGCTTCG
* * **
47593956 TGCCAGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCG
1 TGCCGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCGTAA
47593999 TGCCGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCGTAA
1 TGCCGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCGTAA
*
47594042 TGTCGGTGA
1 TGCCGGTGA
47594051 AATGATATGT
Statistics
Matches: 47, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
43 47 1.00
ACGTcount: A:0.13, C:0.23, G:0.35, T:0.29
Consensus pattern (43 bp):
TGCCGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCGTAA
Found at i:47594072 original size:98 final size:98
Alignment explanation
Indices: 47593872--47594073 Score: 255
Period size: 98 Copynumber: 2.1 Consensus size: 98
47593862 TTGGTATTAT
47593872 ATTCGAGCCTTCGTGCCTAACAGGCTTCGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTAGCA
1 ATTCGAGCCTTCGTGCCTAACAGGCTTCGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTAGCA
* ** *** * *
47593937 GGCTTCGTGCCAGGCTTCGTGCCAGTGATGTGT
66 GGCGTAATGCCAGGCTAAATGACAGTGATGTGA
* *
47593970 ATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTAGCA
1 ATTCGAGCCTTCGTGCCTAACAGGCTTCGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTAGCA
* * *
47594035 GGCGTAATGTC-GG-TGAAATGATATGTTATGTGA
66 GGCGTAATGCCAGGCT-AAATGACA-GTGATGTGA
47594068 ATTCGA
1 ATTCGA
47594074 TGTTCCTTGT
Statistics
Matches: 88, Mismatches: 14, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
96 1 0.01
97 5 0.06
98 82 0.93
ACGTcount: A:0.15, C:0.23, G:0.32, T:0.30
Consensus pattern (98 bp):
ATTCGAGCCTTCGTGCCTAACAGGCTTCGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTAGCA
GGCGTAATGCCAGGCTAAATGACAGTGATGTGA
Found at i:47596476 original size:32 final size:32
Alignment explanation
Indices: 47596435--47596496 Score: 99
Period size: 32 Copynumber: 1.9 Consensus size: 32
47596425 GCTTCAAAAC
*
47596435 TTAGTTTAAAGTTTCGTCT-AAAGTTTCCAACA
1 TTAGTTTAAAGTTTCAT-TGAAAGTTTCCAACA
47596467 TTAGTTTAAAGTTTCATTGAAAGTTTCCAA
1 TTAGTTTAAAGTTTCATTGAAAGTTTCCAA
47596497 TGTTTTAATG
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
31 1 0.04
32 27 0.96
ACGTcount: A:0.32, C:0.13, G:0.13, T:0.42
Consensus pattern (32 bp):
TTAGTTTAAAGTTTCATTGAAAGTTTCCAACA
Found at i:47600674 original size:24 final size:20
Alignment explanation
Indices: 47600645--47600696 Score: 52
Period size: 24 Copynumber: 2.5 Consensus size: 20
47600635 ATTTATCAAA
47600645 ATAAATATTAGATTAAATATAAT
1 ATAAATATT--ATTAAA-ATAAT
*
47600668 ATTAAATCTTATTAAAATAAT
1 A-TAAATATTATTAAAATAAT
47600689 A-AAATATT
1 ATAAATATT
47600697 TATCTACAAG
Statistics
Matches: 26, Mismatches: 2, Indels: 6
0.76 0.06 0.18
Matches are distributed among these distances:
19 6 0.23
21 6 0.23
22 6 0.23
23 1 0.04
24 7 0.27
ACGTcount: A:0.56, C:0.02, G:0.02, T:0.40
Consensus pattern (20 bp):
ATAAATATTATTAAAATAAT
Found at i:47607364 original size:31 final size:31
Alignment explanation
Indices: 47607281--47607366 Score: 129
Period size: 31 Copynumber: 2.8 Consensus size: 31
47607271 TCAATCTCAG
* *
47607281 CATAT-ACTGGGCCAAAGCCTTCACATTATT
1 CATATCACTGGGCCGAAGCCTTTACATTATT
* *
47607311 AATATCACTGGGCCGAAGCCTTTTCATTATT
1 CATATCACTGGGCCGAAGCCTTTACATTATT
47607342 CATATCACTGGGCCGAAGCCTTTAC
1 CATATCACTGGGCCGAAGCCTTTAC
47607367 TGTAACGATA
Statistics
Matches: 49, Mismatches: 6, Indels: 1
0.88 0.11 0.02
Matches are distributed among these distances:
30 4 0.08
31 45 0.92
ACGTcount: A:0.27, C:0.27, G:0.16, T:0.30
Consensus pattern (31 bp):
CATATCACTGGGCCGAAGCCTTTACATTATT
Found at i:47607707 original size:11 final size:11
Alignment explanation
Indices: 47607676--47607723 Score: 57
Period size: 11 Copynumber: 4.6 Consensus size: 11
47607666 AAATGAGTAC
47607676 ATCATGTGCAT
1 ATCATGTGCAT
*
47607687 ATCA--TACAT
1 ATCATGTGCAT
47607696 ATCATGTGCAT
1 ATCATGTGCAT
*
47607707 ATCATGT-CAA
1 ATCATGTGCAT
47607717 ATCATGT
1 ATCATGT
47607724 ACATCAAAAT
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
9 8 0.25
10 9 0.28
11 15 0.47
ACGTcount: A:0.33, C:0.19, G:0.12, T:0.35
Consensus pattern (11 bp):
ATCATGTGCAT
Found at i:47607788 original size:25 final size:25
Alignment explanation
Indices: 47607760--47607807 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
47607750 ATAATTAAAC
* *
47607760 CCTAGGGGTAAAATGGTCATTTTTA
1 CCTAGGGGCAAAATAGTCATTTTTA
47607785 CCTAGGGGCAAAATAGTCATTTT
1 CCTAGGGGCAAAATAGTCATTTT
47607808 CATATTATAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.29, C:0.15, G:0.23, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAATAGTCATTTTTA
Found at i:47612865 original size:47 final size:47
Alignment explanation
Indices: 47612788--47612913 Score: 141
Period size: 47 Copynumber: 2.7 Consensus size: 47
47612778 GGAAATTGAG
* * * *
47612788 ATCCGAACTCGTTGAGTTGCGTTCCTAGTTCGTGA-GAAT-TATG-AGGC
1 ATCCGAACTCGTTGAGTTGTGTTCCGAGTTC---ACGAATGGATGCAAGC
* **
47612835 ATCCAAACTCGTTGAGTTGTGTTCCGAGTTCACTTATGGATGCAAGC
1 ATCCGAACTCGTTGAGTTGTGTTCCGAGTTCACGAATGGATGCAAGC
47612882 ATCCGAACTCGTTGAGTTGTGTTCCGAGTTCA
1 ATCCGAACTCGTTGAGTTGTGTTCCGAGTTCA
47612914 TTATGGATGT
Statistics
Matches: 68, Mismatches: 8, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
44 1 0.01
45 2 0.03
46 3 0.04
47 62 0.91
ACGTcount: A:0.21, C:0.21, G:0.25, T:0.33
Consensus pattern (47 bp):
ATCCGAACTCGTTGAGTTGTGTTCCGAGTTCACGAATGGATGCAAGC
Done.