Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A06
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 115140250
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2234201 characters in sequence are not A, C, G, or T
File 141 of 345
Found at i:47612943 original size:46 final size:46
Alignment explanation
Indices: 47612833--47612965 Score: 171
Period size: 46 Copynumber: 2.9 Consensus size: 46
47612823 GAATTATGAG
*
47612833 GCATCCAAACTCGTTGAGTTGTGTTCCGAGTTCACTTATGGATGCAA
1 GCATCCCAACTCGTTGAGTTGTGTTCCGAGTTCA-TTATGGATGCAA
* *
47612880 GCATCCGAACTCGTTGAGTTGTGTTCCGAGTTCATTATGGATGTGAA
1 GCATCCCAACTCGTTGAGTTGTGTTCCGAGTTCATTATGGATG-CAA
* * *
47612927 -CA-CCCAAGCTCATTGAGTTGCGTTCCGAGTTAATTATGG
1 GCATCCCAA-CTCGTTGAGTTGTGTTCCGAGTTCATTATGG
47612966 GTGAAATTAT
Statistics
Matches: 78, Mismatches: 6, Indels: 5
0.88 0.07 0.06
Matches are distributed among these distances:
45 4 0.05
46 39 0.50
47 35 0.45
ACGTcount: A:0.23, C:0.20, G:0.25, T:0.32
Consensus pattern (46 bp):
GCATCCCAACTCGTTGAGTTGTGTTCCGAGTTCATTATGGATGCAA
Found at i:47631708 original size:29 final size:29
Alignment explanation
Indices: 47631669--47631731 Score: 126
Period size: 29 Copynumber: 2.2 Consensus size: 29
47631659 AATTTCTAAA
47631669 AATTTTATGGTAAGAAGATATGTGAGTCT
1 AATTTTATGGTAAGAAGATATGTGAGTCT
47631698 AATTTTATGGTAAGAAGATATGTGAGTCT
1 AATTTTATGGTAAGAAGATATGTGAGTCT
47631727 AATTT
1 AATTT
47631732 CCAAAATTTC
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 34 1.00
ACGTcount: A:0.35, C:0.03, G:0.22, T:0.40
Consensus pattern (29 bp):
AATTTTATGGTAAGAAGATATGTGAGTCT
Found at i:47633308 original size:18 final size:18
Alignment explanation
Indices: 47633275--47633386 Score: 107
Period size: 18 Copynumber: 6.2 Consensus size: 18
47633265 AGTTTCATTT
* *
47633275 AGTAACATTCAATTATTC
1 AGTAACAATCAGTTATTC
* *
47633293 AGTAGCAATTAGTTATTC
1 AGTAACAATCAGTTATTC
* **
47633311 AGTAACAATCATTTGCTC
1 AGTAACAATCAGTTATTC
* *
47633329 AGTAGCAATTAGTTATTC
1 AGTAACAATCAGTTATTC
* * *
47633347 GGTAACGATCAATTATTC
1 AGTAACAATCAGTTATTC
*
47633365 AGTAACAGTCAGTTATTC
1 AGTAACAATCAGTTATTC
47633383 AGTA
1 AGTA
47633387 CTTTTATTTA
Statistics
Matches: 71, Mismatches: 23, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
18 71 1.00
ACGTcount: A:0.35, C:0.15, G:0.14, T:0.36
Consensus pattern (18 bp):
AGTAACAATCAGTTATTC
Found at i:47633331 original size:36 final size:36
Alignment explanation
Indices: 47633275--47633386 Score: 134
Period size: 36 Copynumber: 3.1 Consensus size: 36
47633265 AGTTTCATTT
* *
47633275 AGTAACATTCAATTATTCAGTAGCAATTAGTTATTC
1 AGTAACAATCAATTACTCAGTAGCAATTAGTTATTC
* *
47633311 AGTAACAATCATTTGCTCAGTAGCAATTAGTTATTC
1 AGTAACAATCAATTACTCAGTAGCAATTAGTTATTC
* * * * * *
47633347 GGTAACGATCAATTATTCAGTAACAGTCAGTTATTC
1 AGTAACAATCAATTACTCAGTAGCAATTAGTTATTC
47633383 AGTA
1 AGTA
47633387 CTTTTATTTA
Statistics
Matches: 63, Mismatches: 13, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
36 63 1.00
ACGTcount: A:0.35, C:0.15, G:0.14, T:0.36
Consensus pattern (36 bp):
AGTAACAATCAATTACTCAGTAGCAATTAGTTATTC
Found at i:47633603 original size:44 final size:44
Alignment explanation
Indices: 47633550--47633640 Score: 112
Period size: 44 Copynumber: 2.1 Consensus size: 44
47633540 CCGAAGTAAC
* *
47633550 AGTAACAGTACGACACACA-AGGTGCCTCATTGACTTAAAGTCGA
1 AGTAACAGTACGACACACATA-GTGCCTCATCGACTCAAAGTCGA
* ** *
47633594 AGTAACAGTATGACACTTATAGTGCCTCATCGACTCAAGGTCGA
1 AGTAACAGTACGACACACATAGTGCCTCATCGACTCAAAGTCGA
47633638 AGT
1 AGT
47633641 GTAACATCCT
Statistics
Matches: 40, Mismatches: 6, Indels: 2
0.83 0.12 0.04
Matches are distributed among these distances:
44 39 0.98
45 1 0.03
ACGTcount: A:0.34, C:0.22, G:0.21, T:0.23
Consensus pattern (44 bp):
AGTAACAGTACGACACACATAGTGCCTCATCGACTCAAAGTCGA
Found at i:47634938 original size:28 final size:27
Alignment explanation
Indices: 47634906--47634989 Score: 72
Period size: 28 Copynumber: 3.2 Consensus size: 27
47634896 AACTTCAATC
47634906 ACGTGTGTAGTACTAAGTGCAGGCTACT
1 ACGTGTGTAGTACTAAGT-CAGGCTACT
* * *
47634934 ACGTGTATCAG-A-T-GGTTAGG-T-C-
1 ACGTGTGT-AGTACTAAGTCAGGCTACT
47634956 ACGTGTGTAGTACTAAGTTCAGGCTACT
1 ACGTGTGTAGTACTAAG-TCAGGCTACT
47634984 ACGTGT
1 ACGTGT
47634990 ACCAGATAAT
Statistics
Matches: 42, Mismatches: 6, Indels: 16
0.66 0.09 0.25
Matches are distributed among these distances:
21 2 0.05
22 8 0.19
23 2 0.05
24 2 0.05
25 7 0.17
26 3 0.07
27 2 0.05
28 14 0.33
29 2 0.05
ACGTcount: A:0.24, C:0.17, G:0.29, T:0.31
Consensus pattern (27 bp):
ACGTGTGTAGTACTAAGTCAGGCTACT
Found at i:47635042 original size:49 final size:50
Alignment explanation
Indices: 47634850--47635046 Score: 220
Period size: 50 Copynumber: 3.9 Consensus size: 50
47634840 ATCTATTGTG
* * * *
47634850 AGGTCATGTGTGTAGTACTAAGTGTAGGCTACTATGCGTACCCGATAACTT
1 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAA-TT
* * * **
47634901 CA-ATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTT
1 -AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAATT
* *
47634951 AGGTCACGTGTGTAGTACTAAGTTCAGGCTACTACGTGTACCAGATAATT
1 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAATT
* * *
47635001 -GGTC-GGATGTGTAGTACTAAGTGCAGGCTACTATGCATACCAGATA
1 AGGTCACG-TGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATA
47635047 GATTTGGCTA
Statistics
Matches: 124, Mismatches: 19, Indels: 7
0.83 0.13 0.05
Matches are distributed among these distances:
48 1 0.01
49 40 0.32
50 45 0.36
51 37 0.30
52 1 0.01
ACGTcount: A:0.27, C:0.18, G:0.26, T:0.29
Consensus pattern (50 bp):
AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAATT
Found at i:47637451 original size:13 final size:12
Alignment explanation
Indices: 47637429--47637463 Score: 52
Period size: 13 Copynumber: 2.8 Consensus size: 12
47637419 CAAAATTCCC
47637429 TTTCTTCTTTCT
1 TTTCTTCTTTCT
47637441 TTTCTTTCTTTCT
1 TTTC-TTCTTTCT
*
47637454 TTCCTTCTTT
1 TTTCTTCTTT
47637464 TCTTCTCTAT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
12 10 0.48
13 11 0.52
ACGTcount: A:0.00, C:0.26, G:0.00, T:0.74
Consensus pattern (12 bp):
TTTCTTCTTTCT
Found at i:47637510 original size:12 final size:11
Alignment explanation
Indices: 47637428--47637511 Score: 51
Period size: 12 Copynumber: 6.8 Consensus size: 11
47637418 TCAAAATTCC
*
47637428 CTTTCTTCTTT
1 CTTTCTTTTTT
47637439 CTTTTCTTTCTTT
1 C-TTTCTTT-TTT
47637452 CTTTCCTTCTTTT
1 CTTT-CTT-TTTT
*
47637465 CTTCTCTATTTT
1 CTT-TCTTTTTT
*
47637477 CGTTTCATATTTT
1 C-TTTC-TTTTTT
*
47637490 GTTTCCTTTTTT
1 CTTT-CTTTTTT
47637502 CATTTCTTTT
1 C-TTTCTTTT
47637512 GTTTCTTTTA
Statistics
Matches: 59, Mismatches: 5, Indels: 17
0.73 0.06 0.21
Matches are distributed among these distances:
11 1 0.02
12 29 0.49
13 27 0.46
14 2 0.03
ACGTcount: A:0.05, C:0.23, G:0.02, T:0.70
Consensus pattern (11 bp):
CTTTCTTTTTT
Found at i:47637953 original size:16 final size:17
Alignment explanation
Indices: 47637932--47637975 Score: 51
Period size: 15 Copynumber: 2.8 Consensus size: 17
47637922 ATCTATTTCA
*
47637932 TAATATAATATCAA-TT
1 TAATATAATATCAACAT
47637948 TAATATAA-AT-AACAT
1 TAATATAATATCAACAT
47637963 TAATA-AATATCAA
1 TAATATAATATCAA
47637976 ATATAAGACC
Statistics
Matches: 24, Mismatches: 1, Indels: 6
0.77 0.03 0.19
Matches are distributed among these distances:
14 4 0.17
15 10 0.42
16 10 0.42
ACGTcount: A:0.57, C:0.07, G:0.00, T:0.36
Consensus pattern (17 bp):
TAATATAATATCAACAT
Found at i:47642763 original size:36 final size:35
Alignment explanation
Indices: 47642723--47642834 Score: 107
Period size: 36 Copynumber: 3.1 Consensus size: 35
47642713 AATTTCATTT
* *
47642723 AGTAACATTCAAATATTCAGTAGCAATTAGTTATTC
1 AGTAACA-TCAATTATTCAGTAGCAATCAGTTATTC
* ** *
47642759 AGTAACAATCATTTGCTCAGTAGCAATCAATTATTC
1 AGTAAC-ATCAATTATTCAGTAGCAATCAGTTATTC
* * * *
47642795 GGTAACGATCAATTATTCAGTAACAGTCAGTCATTC
1 AGTAAC-ATCAATTATTCAGTAGCAATCAGTTATTC
47642831 AGTA
1 AGTA
47642835 CTTTTATTTA
Statistics
Matches: 59, Mismatches: 16, Indels: 2
0.77 0.21 0.03
Matches are distributed among these distances:
36 58 0.98
37 1 0.02
ACGTcount: A:0.37, C:0.17, G:0.13, T:0.33
Consensus pattern (35 bp):
AGTAACATCAATTATTCAGTAGCAATCAGTTATTC
Found at i:47642805 original size:18 final size:18
Alignment explanation
Indices: 47642753--47642818 Score: 69
Period size: 18 Copynumber: 3.7 Consensus size: 18
47642743 TAGCAATTAG
* *
47642753 TTATTCAGTAACAATCAT
1 TTATTCAGTAACGATCAA
** * *
47642771 TTGCTCAGTAGCAATCAA
1 TTATTCAGTAACGATCAA
*
47642789 TTATTCGGTAACGATCAA
1 TTATTCAGTAACGATCAA
47642807 TTATTCAGTAAC
1 TTATTCAGTAAC
47642819 AGTCAGTCAT
Statistics
Matches: 38, Mismatches: 10, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
18 38 1.00
ACGTcount: A:0.35, C:0.18, G:0.12, T:0.35
Consensus pattern (18 bp):
TTATTCAGTAACGATCAA
Found at i:47656121 original size:6 final size:6
Alignment explanation
Indices: 47656091--47656230 Score: 56
Period size: 6 Copynumber: 22.7 Consensus size: 6
47656081 AAGAAATATT
* * * *
47656091 ATCAGA A-CTAGA ATCAAA ATGAGA ATCAGA ATCAAA ATCAG- GTGACAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA AT--CAGA
* * * * * *
47656140 ATTAGA ATCAGA ATTAGA ATCAGA ATTAG- GTGACAGA ATCAAA ATCAGT
1 ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA AT--CAGA ATCAGA ATCAGA
* *
47656189 ATCAGGTA A-CAAA ATCAGT ATCAGGTA A-CAGA ATCAGA ATCA
1 ATCA-G-A ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA ATCA
47656231 AAAAGTGAAT
Statistics
Matches: 96, Mismatches: 24, Indels: 28
0.65 0.16 0.19
Matches are distributed among these distances:
5 7 0.07
6 73 0.76
7 12 0.12
8 4 0.04
ACGTcount: A:0.49, C:0.14, G:0.18, T:0.20
Consensus pattern (6 bp):
ATCAGA
Found at i:47656153 original size:12 final size:12
Alignment explanation
Indices: 47656136--47656168 Score: 66
Period size: 12 Copynumber: 2.8 Consensus size: 12
47656126 AATCAGGTGA
47656136 CAGAATTAGAAT
1 CAGAATTAGAAT
47656148 CAGAATTAGAAT
1 CAGAATTAGAAT
47656160 CAGAATTAG
1 CAGAATTAG
47656169 GTGACAGAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.48, C:0.09, G:0.18, T:0.24
Consensus pattern (12 bp):
CAGAATTAGAAT
Found at i:47656153 original size:37 final size:37
Alignment explanation
Indices: 47656100--47656206 Score: 126
Period size: 37 Copynumber: 2.9 Consensus size: 37
47656090 TATCAGAACT
*
47656100 AGAATCAAAATGAGAATCAGAATCAAAATCAGGTGAC
1 AGAATCAAAATCAGAATCAGAATCAAAATCAGGTGAC
* * * * *
47656137 AGAATTAGAATCAGAATTAGAATCAGAATTAGGTGAC
1 AGAATCAAAATCAGAATCAGAATCAAAATCAGGTGAC
*
47656174 AGAATCAAAATCAGTATCAGGTAA-CAAAATCAG
1 AGAATCAAAATCAGAATCA-G-AATCAAAATCAG
47656207 TATCAGGTAA
Statistics
Matches: 56, Mismatches: 12, Indels: 3
0.79 0.17 0.04
Matches are distributed among these distances:
37 46 0.82
38 8 0.14
39 2 0.04
ACGTcount: A:0.50, C:0.12, G:0.19, T:0.20
Consensus pattern (37 bp):
AGAATCAAAATCAGAATCAGAATCAAAATCAGGTGAC
Found at i:47656203 original size:19 final size:19
Alignment explanation
Indices: 47656179--47656230 Score: 86
Period size: 19 Copynumber: 2.7 Consensus size: 19
47656169 GTGACAGAAT
47656179 CAAAATCAGTATCAGGTAA
1 CAAAATCAGTATCAGGTAA
47656198 CAAAATCAGTATCAGGTAA
1 CAAAATCAGTATCAGGTAA
* *
47656217 CAGAATCAGAATCA
1 CAAAATCAGTATCA
47656231 AAAAGTGAAT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 31 1.00
ACGTcount: A:0.48, C:0.17, G:0.15, T:0.19
Consensus pattern (19 bp):
CAAAATCAGTATCAGGTAA
Found at i:47656229 original size:25 final size:25
Alignment explanation
Indices: 47656148--47656230 Score: 79
Period size: 25 Copynumber: 3.6 Consensus size: 25
47656138 GAATTAGAAT
* * * *
47656148 CAGAATTAGAATCAGAATTAGGTGA
1 CAGAATCAGAATCAGTATCAGGTAA
*
47656173 CAGAATCAAAATCAGTATCAGGTAA
1 CAGAATCAGAATCAGTATCAGGTAA
47656198 C---A--A-AATCAGTATCAGGTAA
1 CAGAATCAGAATCAGTATCAGGTAA
47656217 CAGAATCAGAATCA
1 CAGAATCAGAATCA
47656231 AAAAGTGAAT
Statistics
Matches: 47, Mismatches: 5, Indels: 12
0.73 0.08 0.19
Matches are distributed among these distances:
19 17 0.36
20 1 0.02
22 2 0.04
24 1 0.02
25 26 0.55
ACGTcount: A:0.47, C:0.14, G:0.18, T:0.20
Consensus pattern (25 bp):
CAGAATCAGAATCAGTATCAGGTAA
Found at i:47656625 original size:22 final size:22
Alignment explanation
Indices: 47656591--47656655 Score: 69
Period size: 22 Copynumber: 3.0 Consensus size: 22
47656581 GCAAGTATGT
*
47656591 TTGGCACACAGCCATAATCAGG
1 TTGGCACAAAGCCATAATCAGG
* * *
47656613 TTGGCATAGAGCCAT-ATGTAGG
1 TTGGCACAAAGCCATAAT-CAGG
*
47656635 TTGGCGCAAAGCCATAATCAG
1 TTGGCACAAAGCCATAATCAG
47656656 AATAATTGGC
Statistics
Matches: 34, Mismatches: 7, Indels: 4
0.76 0.16 0.09
Matches are distributed among these distances:
21 2 0.06
22 30 0.88
23 2 0.06
ACGTcount: A:0.31, C:0.22, G:0.26, T:0.22
Consensus pattern (22 bp):
TTGGCACAAAGCCATAATCAGG
Found at i:47657153 original size:26 final size:27
Alignment explanation
Indices: 47657044--47657183 Score: 174
Period size: 27 Copynumber: 5.2 Consensus size: 27
47657034 GGGTAAAATG
* * * * *
47657044 GTAATTTTACCTTATAAGGGTATCTCG
1 GTAATTCTACCCTACAAGGGTATTTCA
*
47657071 GTAATTCTACCCTACAAGGGTATTTCG
1 GTAATTCTACCCTACAAGGGTATTTCA
*
47657098 GTATTTCTACCCTACAAGGGTATTTCA
1 GTAATTCTACCCTACAAGGGTATTTCA
* *
47657125 GTAATTCTACCCTATAGGGGTATTT-A
1 GTAATTCTACCCTACAAGGGTATTTCA
*
47657151 GTAATTCTACCCTACAGGGGTATTTCA
1 GTAATTCTACCCTACAAGGGTATTTCA
*
47657178 ATAATT
1 GTAATT
47657184 TTGTAAATCG
Statistics
Matches: 101, Mismatches: 11, Indels: 2
0.89 0.10 0.02
Matches are distributed among these distances:
26 25 0.25
27 76 0.75
ACGTcount: A:0.27, C:0.19, G:0.17, T:0.37
Consensus pattern (27 bp):
GTAATTCTACCCTACAAGGGTATTTCA
Found at i:47657198 original size:27 final size:26
Alignment explanation
Indices: 47657168--47657271 Score: 73
Period size: 27 Copynumber: 3.8 Consensus size: 26
47657158 TACCCTACAG
*
47657168 GGGTATTTCAATAATTTTGTAAATCGA
1 GGGTATTT-AGTAATTTTGTAAATCGA
** * *
47657195 GGGTAAAATGGTAATTTTGTAAATCGG
1 GGGT-ATTTAGTAATTTTGTAAATCGA
** ** *
47657222 GGGTACTTTTTTAATTTTACAAGTCGA
1 GGGTA-TTTAGTAATTTTGTAAATCGA
*
47657249 GGGTATTTCAGTAATTTGGTAAA
1 GGGTATTT-AGTAATTTTGTAAA
47657272 CTAAAGTATT
Statistics
Matches: 55, Mismatches: 19, Indels: 6
0.69 0.24 0.08
Matches are distributed among these distances:
26 4 0.07
27 49 0.89
28 2 0.04
ACGTcount: A:0.31, C:0.07, G:0.23, T:0.39
Consensus pattern (26 bp):
GGGTATTTAGTAATTTTGTAAATCGA
Found at i:47658440 original size:19 final size:21
Alignment explanation
Indices: 47658417--47658464 Score: 57
Period size: 20 Copynumber: 2.4 Consensus size: 21
47658407 TTATTTTTTT
*
47658417 CCTAATTACTCTTAATT-AAG
1 CCTAATTACACTTAATTAAAG
47658437 -CTAAATT-CACTTAATTAAAG
1 CCT-AATTACACTTAATTAAAG
47658457 CCTAATTA
1 CCTAATTA
47658465 ACCACTCGAT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
19 10 0.43
20 11 0.48
21 2 0.09
ACGTcount: A:0.40, C:0.19, G:0.04, T:0.38
Consensus pattern (21 bp):
CCTAATTACACTTAATTAAAG
Found at i:47662502 original size:45 final size:45
Alignment explanation
Indices: 47662451--47662540 Score: 180
Period size: 45 Copynumber: 2.0 Consensus size: 45
47662441 TGGGAACGTG
47662451 ATCAAATCTCGTTCATTTTATTAGATATTTAATTTTTCTTGTTTT
1 ATCAAATCTCGTTCATTTTATTAGATATTTAATTTTTCTTGTTTT
47662496 ATCAAATCTCGTTCATTTTATTAGATATTTAATTTTTCTTGTTTT
1 ATCAAATCTCGTTCATTTTATTAGATATTTAATTTTTCTTGTTTT
47662541 TATTTTTTTA
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
45 45 1.00
ACGTcount: A:0.24, C:0.11, G:0.07, T:0.58
Consensus pattern (45 bp):
ATCAAATCTCGTTCATTTTATTAGATATTTAATTTTTCTTGTTTT
Found at i:47667171 original size:27 final size:27
Alignment explanation
Indices: 47667127--47667589 Score: 135
Period size: 27 Copynumber: 17.1 Consensus size: 27
47667117 TTAGTTTACC
* * *
47667127 AAATTACTAAAATGCCCTCAATTTGTA
1 AAATTACCAAAATACCCTCAATTTATA
* *
47667154 AAATTACCAAAGTACCCTCGATTTATA
1 AAATTACCAAAATACCCTCAATTTATA
* **** *
47667181 GAATTACCGTTTTACCCTCAATTTACA
1 AAATTACCAAAATACCCTCAATTTATA
*** ** *
47667208 AAATTACCATTTTACCCTTGATTTACA
1 AAATTACCAAAATACCCTCAATTTATA
**** *
47667235 AAATTACCGTTTTACCCTCGATTTATA
1 AAATTACCAAAATACCCTCAATTTATA
* * *** *
47667262 GAATTATCATTTTACCCTCGATTTATA
1 AAATTACCAAAATACCCTCAATTTATA
* **** * *
47667289 GAATTACCGTTTTACTCTCGATTTATA
1 AAATTACCAAAATACCCTCAATTTATA
* *** *
47667316 GAATTACCATTTTACCCTCGATTTATA
1 AAATTACCAAAATACCCTCAATTTATA
* **** * **
47667343 GAATTACCGCTTTACCTTTGATTTATA
1 AAATTACCAAAATACCCTCAATTTATA
* **** * *
47667370 GAATTACCTTTTTACCCTCTATTTACA
1 AAATTACCAAAATACCCTCAATTTATA
** * * * *
47667397 AAATTACTGAAATACTCTTAGTTTACA
1 AAATTACCAAAATACCCTCAATTTATA
* *
47667424 AAATTACCAAAATACCCTCGA-TCAGTA
1 AAATTACCAAAATACCCTCAATTTA-TA
** *
47667451 AAATTACCAAAATACCC-CTGGTTTGTA
1 AAATTACCAAAATACCCTC-AATTTATA
* ** *
47667478 AAATTACTAAAATACCC-CTGGTTTGTA
1 AAATTACCAAAATACCCTC-AATTTATA
**
47667505 AAATTACCAAAATACCC-CTGGTTTATA
1 AAATTACCAAAATACCCTC-AATTTATA
* **
47667532 AAATTACCAAAATACCC-CTGATTTACG
1 AAATTACCAAAATACCCTC-AATTTATA
* * * *
47667559 AAATTATCAAAATACTCTCGATTTGTA
1 AAATTACCAAAATACCCTCAATTTATA
47667586 AAAT
1 AAAT
47667590 ATCGAAATAC
Statistics
Matches: 363, Mismatches: 69, Indels: 8
0.82 0.16 0.02
Matches are distributed among these distances:
26 3 0.01
27 358 0.99
28 2 0.01
ACGTcount: A:0.35, C:0.21, G:0.08, T:0.36
Consensus pattern (27 bp):
AAATTACCAAAATACCCTCAATTTATA
Found at i:47667211 original size:54 final size:54
Alignment explanation
Indices: 47667141--47667403 Score: 319
Period size: 54 Copynumber: 4.9 Consensus size: 54
47667131 TACTAAAATG
* ***
47667141 CCCTCAATTTGTAAAATTACCAAAGTACCCTCGATTTATAGAATTACCGTTTTA
1 CCCTCAATTTATAAAATTACCATTTTACCCTCGATTTATAGAATTACCGTTTTA
* * * *
47667195 CCCTCAATTTACAAAATTACCATTTTACCCTTGATTTACAAAATTACCGTTTTA
1 CCCTCAATTTATAAAATTACCATTTTACCCTCGATTTATAGAATTACCGTTTTA
* * *
47667249 CCCTCGATTTATAGAATTATCATTTTACCCTCGATTTATAGAATTACCGTTTTA
1 CCCTCAATTTATAAAATTACCATTTTACCCTCGATTTATAGAATTACCGTTTTA
* * * *
47667303 CTCTCGATTTATAGAATTACCATTTTACCCTCGATTTATAGAATTACCGCTTTA
1 CCCTCAATTTATAAAATTACCATTTTACCCTCGATTTATAGAATTACCGTTTTA
* ** * * * * *
47667357 CCTTTGATTTATAGAATTACCTTTTTACCCTCTATTTACAAAATTAC
1 CCCTCAATTTATAAAATTACCATTTTACCCTCGATTTATAGAATTAC
47667404 TGAAATACTC
Statistics
Matches: 184, Mismatches: 25, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
54 184 1.00
ACGTcount: A:0.30, C:0.22, G:0.07, T:0.40
Consensus pattern (54 bp):
CCCTCAATTTATAAAATTACCATTTTACCCTCGATTTATAGAATTACCGTTTTA
Found at i:47667256 original size:81 final size:81
Alignment explanation
Indices: 47667166--47667403 Score: 325
Period size: 81 Copynumber: 2.9 Consensus size: 81
47667156 ATTACCAAAG
* * *
47667166 TACCCTCGATTTATAGAATTACCGTTTTACCCTCAATTTACAAAATTACCATTTTACCCTTGATT
1 TACCCTCGATTTATAGAATTACCGTTTTACCCTCGATTTATAGAATTACCATTTTACCCTTGATT
*
47667231 TACAAAATTACCGTTT
66 TACAAAATTACCATTT
* * * * *
47667247 TACCCTCGATTTATAGAATTATCATTTTACCCTCGATTTATAGAATTACCGTTTTACTCTCGATT
1 TACCCTCGATTTATAGAATTACCGTTTTACCCTCGATTTATAGAATTACCATTTTACCCTTGATT
* *
47667312 TATAGAATTACCATTT
66 TACAAAATTACCATTT
* * * *
47667328 TACCCTCGATTTATAGAATTACCGCTTTACCTTTGATTTATAGAATTACCTTTTTACCCTCT-AT
1 TACCCTCGATTTATAGAATTACCGTTTTACCCTCGATTTATAGAATTACCATTTTACCCT-TGAT
47667392 TTACAAAATTAC
65 TTACAAAATTAC
47667404 TGAAATACTC
Statistics
Matches: 135, Mismatches: 21, Indels: 2
0.85 0.13 0.01
Matches are distributed among these distances:
81 135 1.00
ACGTcount: A:0.29, C:0.22, G:0.07, T:0.42
Consensus pattern (81 bp):
TACCCTCGATTTATAGAATTACCGTTTTACCCTCGATTTATAGAATTACCATTTTACCCTTGATT
TACAAAATTACCATTT
Found at i:47667440 original size:54 final size:54
Alignment explanation
Indices: 47667382--47667573 Score: 201
Period size: 54 Copynumber: 3.6 Consensus size: 54
47667372 ATTACCTTTT
** * * * *
47667382 TACCCTCT-ATTTACAAAATTACTGAAATACTCTTAGTTTACAAAATTACCAAAA
1 TACCC-CTGATTTACAAAATTACCAAAATACCCCTGGTTTATAAAATTACCAAAA
* * * *
47667436 TA-CCCTCGA-TCAGTAAAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAA
1 TACCCCT-GATTTA-CAAAATTACCAAAATACCCCTGGTTTATAAAATTACCAAAA
* **
47667490 TACCCCTGGTTTGTAAAATTACCAAAATACCCCTGGTTTATAAAATTACCAAAA
1 TACCCCTGATTTACAAAATTACCAAAATACCCCTGGTTTATAAAATTACCAAAA
* *
47667544 TACCCCTGATTTACGAAATTATCAAAATAC
1 TACCCCTGATTTACAAAATTACCAAAATAC
47667574 TCTCGATTTG
Statistics
Matches: 113, Mismatches: 20, Indels: 10
0.79 0.14 0.07
Matches are distributed among these distances:
52 2 0.02
53 4 0.04
54 102 0.90
55 5 0.04
ACGTcount: A:0.41, C:0.22, G:0.07, T:0.30
Consensus pattern (54 bp):
TACCCCTGATTTACAAAATTACCAAAATACCCCTGGTTTATAAAATTACCAAAA
Found at i:47667467 original size:81 final size:81
Alignment explanation
Indices: 47667382--47667573 Score: 219
Period size: 81 Copynumber: 2.4 Consensus size: 81
47667372 ATTACCTTTT
* * *
47667382 TACCCTCT-ATTTACAAAATTACTGAAATACTCTTAGTTTACAAAATTACCAAAATA-CCCTCGA
1 TACCC-CTGATTTACAAAATTACTAAAATACCCCTAGTTTACAAAATTACCAAAATACCCCTCGA
47667445 TCAGTAAAATTACCAAAA
65 TCA-TAAAATTACCAAAA
* ** * ** * *
47667463 TACCCCTGGTTTGTAAAATTACTAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCCTGGTT
1 TACCCCTGATTTACAAAATTACTAAAATACCCCTAGTTTACAAAATTACCAAAATACCCCTCGAT
*
47667528 TATAAAATTACCAAAA
66 CATAAAATTACCAAAA
*
47667544 TACCCCTGATTTACGAAATTA-TCAAAATAC
1 TACCCCTGATTTACAAAATTACT-AAAATAC
47667574 TCTCGATTTG
Statistics
Matches: 92, Mismatches: 16, Indels: 6
0.81 0.14 0.05
Matches are distributed among these distances:
80 3 0.03
81 82 0.89
82 7 0.08
ACGTcount: A:0.41, C:0.22, G:0.07, T:0.30
Consensus pattern (81 bp):
TACCCCTGATTTACAAAATTACTAAAATACCCCTAGTTTACAAAATTACCAAAATACCCCTCGAT
CATAAAATTACCAAAA
Found at i:47667584 original size:81 final size:82
Alignment explanation
Indices: 47667382--47667604 Score: 217
Period size: 81 Copynumber: 2.8 Consensus size: 82
47667372 ATTACCTTTT
* * * ** *
47667382 TACCCTCT-ATTTACAAAATTACTGAAATA-CTCTTAGTTTACAAAATTACCAAAATA-CCCTCG
1 TACCC-CTGATTTACAAAATTACTAAAATACCCCTGA-TTTGTAAAATTACCAAAATACCCCTGG
47667444 ATCAGTAAAATTACCAAAA
64 ATCAGTAAAATTACCAAAA
* ** * *
47667463 TACCCCTGGTTTGTAAAATTACTAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCCTGGTT
1 TACCCCTGATTTACAAAATTACTAAAATACCCCTGATTTGTAAAATTACCAAAATACCCCTGGAT
*
47667528 TA-TAAAATTACCAAAA
66 CAGTAAAATTACCAAAA
* * * *
47667544 TACCCCTGATTTACGAAATTA-TCAAAATA-CTCTCGATTTGTAAAA-TATCGAAATACCCCTG
1 TACCCCTGATTTACAAAATTACT-AAAATACCCCT-GATTTGTAAAATTACCAAAATACCCCTG
47667605 TAGGGTAGAA
Statistics
Matches: 117, Mismatches: 20, Indels: 11
0.79 0.14 0.07
Matches are distributed among these distances:
80 20 0.17
81 87 0.74
82 10 0.09
ACGTcount: A:0.39, C:0.22, G:0.08, T:0.30
Consensus pattern (82 bp):
TACCCCTGATTTACAAAATTACTAAAATACCCCTGATTTGTAAAATTACCAAAATACCCCTGGAT
CAGTAAAATTACCAAAA
Found at i:47667588 original size:54 final size:54
Alignment explanation
Indices: 47667423--47667604 Score: 183
Period size: 54 Copynumber: 3.4 Consensus size: 54
47667413 CTTAGTTTAC
* * *
47667423 AAAATTACCAAAATA-CCCTCGA-TCAGTAAAATTACCAAAATACCCCTGGTTTGT
1 AAAATTACCAAAATACCCCT-GATTTA-CAAAATTACCAAAATACCCCTGATTTGT
* * ** * *
47667477 AAAATTACTAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCCTGGTTTAT
1 AAAATTACCAAAATACCCCTGATTTACAAAATTACCAAAATACCCCTGATTTGT
* * *
47667531 AAAATTACCAAAATACCCCTGATTTACGAAATTATCAAAATA-CTCTCGATTTGT
1 AAAATTACCAAAATACCCCTGATTTACAAAATTACCAAAATACCCCT-GATTTGT
* *
47667585 AAAA-TATCGAAATACCCCTG
1 AAAATTACCAAAATACCCCTG
47667605 TAGGGTAGAA
Statistics
Matches: 109, Mismatches: 16, Indels: 7
0.83 0.12 0.05
Matches are distributed among these distances:
53 17 0.16
54 87 0.80
55 5 0.05
ACGTcount: A:0.41, C:0.22, G:0.09, T:0.29
Consensus pattern (54 bp):
AAAATTACCAAAATACCCCTGATTTACAAAATTACCAAAATACCCCTGATTTGT
Found at i:47667633 original size:27 final size:27
Alignment explanation
Indices: 47667593--47667753 Score: 216
Period size: 27 Copynumber: 6.0 Consensus size: 27
47667583 GTAAAATATC
*
47667593 GAAATACCCCTGTAGGGTAGAATTACT
1 GAAATACCCATGTAGGGTAGAATTACT
* *
47667620 GAAATGCCCATGTAGGGTAGAATTACC
1 GAAATACCCATGTAGGGTAGAATTACT
47667647 GAAATACTCC-TGTAGGGTAGAATTACT
1 GAAATAC-CCATGTAGGGTAGAATTACT
*
47667674 GAAATACCCCTGTAGGGTAGAATTACT
1 GAAATACCCATGTAGGGTAGAATTACT
* *
47667701 AAAATACCCATGTAGGGTAGAATTACC
1 GAAATACCCATGTAGGGTAGAATTACT
* * * *
47667728 GAGATACCCTTGTGGGGTAAAATTAC
1 GAAATACCCATGTAGGGTAGAATTAC
47667754 CATTTTGCCC
Statistics
Matches: 119, Mismatches: 13, Indels: 4
0.88 0.10 0.03
Matches are distributed among these distances:
26 2 0.02
27 115 0.97
28 2 0.02
ACGTcount: A:0.34, C:0.17, G:0.23, T:0.25
Consensus pattern (27 bp):
GAAATACCCATGTAGGGTAGAATTACT
Found at i:47667692 original size:81 final size:81
Alignment explanation
Indices: 47667593--47667753 Score: 261
Period size: 81 Copynumber: 2.0 Consensus size: 81
47667583 GTAAAATATC
* *
47667593 GAAATACCCCTGTAGGGTAGAATTACTGAAATGCCCATGTAGGGTAGAATTACCGAAATACTCC-
1 GAAATACCCCTGTAGGGTAGAATTACTAAAATACCCATGTAGGGTAGAATTACCGAAATAC-CCT
*
47667657 TGTAGGGTAGAATTACT
65 TGTAGGGTAAAATTACT
*
47667674 GAAATACCCCTGTAGGGTAGAATTACTAAAATACCCATGTAGGGTAGAATTACCGAGATACCCTT
1 GAAATACCCCTGTAGGGTAGAATTACTAAAATACCCATGTAGGGTAGAATTACCGAAATACCCTT
*
47667739 GTGGGGTAAAATTAC
66 GTAGGGTAAAATTAC
47667754 CATTTTGCCC
Statistics
Matches: 74, Mismatches: 5, Indels: 2
0.91 0.06 0.02
Matches are distributed among these distances:
80 2 0.03
81 72 0.97
ACGTcount: A:0.34, C:0.17, G:0.23, T:0.25
Consensus pattern (81 bp):
GAAATACCCCTGTAGGGTAGAATTACTAAAATACCCATGTAGGGTAGAATTACCGAAATACCCTT
GTAGGGTAAAATTACT
Found at i:47668009 original size:24 final size:25
Alignment explanation
Indices: 47667957--47668023 Score: 100
Period size: 25 Copynumber: 2.7 Consensus size: 25
47667947 AGGAAGTGCT
*
47667957 AAAAA-GGCTATGCCCCAGTTTACC
1 AAAAAGGGCTTTGCCCCAGTTTACC
* *
47667981 GAAAAGGGCTTTGCCCCAGTTTATC
1 AAAAAGGGCTTTGCCCCAGTTTACC
47668006 AAAAAGGGCTTTGCCCCA
1 AAAAAGGGCTTTGCCCCA
47668024 TTATTAAAAG
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
24 4 0.11
25 34 0.89
ACGTcount: A:0.30, C:0.27, G:0.21, T:0.22
Consensus pattern (25 bp):
AAAAAGGGCTTTGCCCCAGTTTACC
Found at i:47685981 original size:30 final size:30
Alignment explanation
Indices: 47685945--47686004 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
47685935 ATTTAATACG
*
47685945 AACTTTTACAAAATTACATTTTTGCCCCTA
1 AACTTTTACAAAATTACACTTTTGCCCCTA
* *
47685975 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTTACAAAATTACACTTTTGCCCCTA
47686005 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.05, T:0.40
Consensus pattern (30 bp):
AACTTTTACAAAATTACACTTTTGCCCCTA
Found at i:47692235 original size:42 final size:42
Alignment explanation
Indices: 47692172--47692283 Score: 145
Period size: 42 Copynumber: 2.7 Consensus size: 42
47692162 TAGTATCGTT
* *
47692172 TCAACGCCATATCCACGATATGGTCTTACATGAAAT-ATCATA
1 TCAACGCCATATCCCCGATATGGTCTTACACGAAATCA-CATA
* * *
47692214 TCAACGCCATGTCCCCAATATGGTCTTATACGAAATCACATA
1 TCAACGCCATATCCCCGATATGGTCTTACACGAAATCACATA
* *
47692256 TCAAGGCCATATCCCGGATATGGTCTTA
1 TCAACGCCATATCCCCGATATGGTCTTA
47692284 TACAGAATCT
Statistics
Matches: 60, Mismatches: 9, Indels: 2
0.85 0.13 0.03
Matches are distributed among these distances:
42 59 0.98
43 1 0.02
ACGTcount: A:0.32, C:0.26, G:0.14, T:0.28
Consensus pattern (42 bp):
TCAACGCCATATCCCCGATATGGTCTTACACGAAATCACATA
Found at i:47699912 original size:40 final size:40
Alignment explanation
Indices: 47699814--47700076 Score: 316
Period size: 40 Copynumber: 6.6 Consensus size: 40
47699804 TCCTCGTTCA
* * * * *
47699814 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
47699853 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
*
47699893 ACTGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
47699933 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
47699973 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * * * * *
47700013 AAGGCCTTC-GGATCTTAATCCGGATATATTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACG
* *
47700053 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
47700077 CAGCATTCAA
Statistics
Matches: 198, Mismatches: 22, Indels: 7
0.87 0.10 0.03
Matches are distributed among these distances:
39 37 0.19
40 153 0.77
41 8 0.04
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:47707863 original size:40 final size:40
Alignment explanation
Indices: 47707765--47708027 Score: 316
Period size: 40 Copynumber: 6.6 Consensus size: 40
47707755 TCCTCGTTCA
* * * * *
47707765 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
47707804 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
*
47707844 ACTGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
47707884 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
47707924 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * * * * *
47707964 AAGGCCTTC-GGATCTTAATCCGGATATATTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACG
* *
47708004 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
47708028 CAGCATTCAA
Statistics
Matches: 198, Mismatches: 22, Indels: 7
0.87 0.10 0.03
Matches are distributed among these distances:
39 37 0.19
40 153 0.77
41 8 0.04
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:47720641 original size:56 final size:57
Alignment explanation
Indices: 47720542--47720664 Score: 146
Period size: 56 Copynumber: 2.2 Consensus size: 57
47720532 CATTATAGAA
* * *
47720542 AGGATTTAGCCTGGACTGGTAATCCTGATATAGCCCTCTTGAGCATATG-T-ACATAT
1 AGGATTTAGCCCGGACGGGTAATCCTGATATAGCCCTCTTGAGCATATGTTGA-AAAT
* *
47720598 AGGATTTAGCCCGGACGGGTAATCCTGAT-TAAG-CTTTTGTGAGCATATGTTGAAAAT
1 AGGATTTAGCCCGGACGGGTAATCCTGATAT-AGCCCTCT-TGAGCATATGTTGAAAAT
47720655 AGGATTTAGC
1 AGGATTTAGC
47720665 TTGGACAAGT
Statistics
Matches: 58, Mismatches: 5, Indels: 7
0.83 0.07 0.10
Matches are distributed among these distances:
55 4 0.07
56 39 0.67
57 14 0.24
58 1 0.02
ACGTcount: A:0.28, C:0.16, G:0.24, T:0.32
Consensus pattern (57 bp):
AGGATTTAGCCCGGACGGGTAATCCTGATATAGCCCTCTTGAGCATATGTTGAAAAT
Found at i:47723904 original size:28 final size:29
Alignment explanation
Indices: 47723872--47723986 Score: 146
Period size: 29 Copynumber: 4.0 Consensus size: 29
47723862 TACCTGTATC
* *
47723872 TGGCCCATTAAGCCC-AATCATATTCATA
1 TGGCCCATTAGGCCCAAATCACATTCATA
*
47723900 TGGCCCATTAGGCCCAAATCACCTGT-ATA
1 TGGCCCATTAGGCCCAAATCACAT-TCATA
*
47723929 TGGCCCATTAGGCCCAAATCACATTTATA
1 TGGCCCATTAGGCCCAAATCACATTCATA
* *
47723958 TGGCCCGTTAGGCCC-AGTCACATTCATA
1 TGGCCCATTAGGCCCAAATCACATTCATA
47723986 T
1 T
47723987 TCATGCTCAC
Statistics
Matches: 77, Mismatches: 7, Indels: 6
0.86 0.08 0.07
Matches are distributed among these distances:
28 27 0.35
29 49 0.64
30 1 0.01
ACGTcount: A:0.28, C:0.30, G:0.16, T:0.27
Consensus pattern (29 bp):
TGGCCCATTAGGCCCAAATCACATTCATA
Found at i:47723933 original size:57 final size:58
Alignment explanation
Indices: 47723863--47723973 Score: 170
Period size: 58 Copynumber: 1.9 Consensus size: 58
47723853 AATTTCACAT
* *
47723863 ACCTGTATCTGGCCCATTAAGCCC-AATCATATTCATATGGCCCATTAGGCCCAAATC
1 ACCTGTATATGGCCCATTAAGCCCAAATCACATTCATATGGCCCATTAGGCCCAAATC
* * *
47723920 ACCTGTATATGGCCCATTAGGCCCAAATCACATTTATATGGCCCGTTAGGCCCA
1 ACCTGTATATGGCCCATTAAGCCCAAATCACATTCATATGGCCCATTAGGCCCA
47723974 GTCACATTCA
Statistics
Matches: 48, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
57 22 0.46
58 26 0.54
ACGTcount: A:0.27, C:0.31, G:0.16, T:0.26
Consensus pattern (58 bp):
ACCTGTATATGGCCCATTAAGCCCAAATCACATTCATATGGCCCATTAGGCCCAAATC
Found at i:47724214 original size:8 final size:8
Alignment explanation
Indices: 47724197--47724232 Score: 54
Period size: 8 Copynumber: 4.5 Consensus size: 8
47724187 GTAGCCAAAC
*
47724197 TTTCGACA
1 TTTCGGCA
47724205 TTTCGGCA
1 TTTCGGCA
*
47724213 TTTCGGCT
1 TTTCGGCA
47724221 TTTCGGCA
1 TTTCGGCA
47724229 TTTC
1 TTTC
47724233 AACTTTTGCC
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
8 25 1.00
ACGTcount: A:0.11, C:0.25, G:0.19, T:0.44
Consensus pattern (8 bp):
TTTCGGCA
Found at i:47724238 original size:16 final size:16
Alignment explanation
Indices: 47724205--47724239 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
47724195 ACTTTCGACA
**
47724205 TTTCGGCATTTCGGCT
1 TTTCGGCATTTCAACT
47724221 TTTCGGCATTTCAACT
1 TTTCGGCATTTCAACT
47724237 TTT
1 TTT
47724240 GCCGATACAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.11, C:0.23, G:0.17, T:0.49
Consensus pattern (16 bp):
TTTCGGCATTTCAACT
Found at i:47725334 original size:16 final size:16
Alignment explanation
Indices: 47725313--47725345 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
47725303 GAAAGTTTGG
47725313 GATTTCGGGATTTTTA
1 GATTTCGGGATTTTTA
47725329 GATTTCGGGATTTTTA
1 GATTTCGGGATTTTTA
47725345 G
1 G
47725346 GGTGTTACAG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.18, C:0.06, G:0.27, T:0.48
Consensus pattern (16 bp):
GATTTCGGGATTTTTA
Found at i:47729595 original size:30 final size:30
Alignment explanation
Indices: 47729561--47729621 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
47729551 TCCTTAACTC
47729561 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
47729591 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
47729621 A
1 A
47729622 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:47730073 original size:11 final size:11
Alignment explanation
Indices: 47730059--47730093 Score: 61
Period size: 11 Copynumber: 3.2 Consensus size: 11
47730049 ACTTTTGGCA
47730059 TTATTTTCGCT
1 TTATTTTCGCT
47730070 TTATTTTCGCT
1 TTATTTTCGCT
*
47730081 TTATTTTCCCT
1 TTATTTTCGCT
47730092 TT
1 TT
47730094 TTATTTCTTT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
11 23 1.00
ACGTcount: A:0.09, C:0.20, G:0.06, T:0.66
Consensus pattern (11 bp):
TTATTTTCGCT
Found at i:47734551 original size:23 final size:23
Alignment explanation
Indices: 47734525--47734590 Score: 80
Period size: 23 Copynumber: 2.8 Consensus size: 23
47734515 TAACAGTTTT
47734525 TTAATTTTAAAATAATTAAATAA
1 TTAATTTTAAAATAATTAAATAA
**
47734548 TTAATTTTAATGTAATTAAATAA
1 TTAATTTTAAAATAATTAAATAA
*
47734571 TT-ATTAGTGAAAATAATTAA
1 TTAATT--TTAAAATAATTAA
47734591 TTTGGGTTGA
Statistics
Matches: 36, Mismatches: 5, Indels: 3
0.82 0.11 0.07
Matches are distributed among these distances:
22 3 0.08
23 23 0.64
24 10 0.28
ACGTcount: A:0.52, C:0.00, G:0.05, T:0.44
Consensus pattern (23 bp):
TTAATTTTAAAATAATTAAATAA
Found at i:47734664 original size:17 final size:15
Alignment explanation
Indices: 47734632--47734676 Score: 54
Period size: 17 Copynumber: 2.8 Consensus size: 15
47734622 TTATTGGGGG
*
47734632 TTAATTTGAGTTAAAT
1 TTAATTT-AATTAAAT
47734648 TTAAATATTAATTAAAT
1 TT-AAT-TTAATTAAAT
47734665 TTAATTTAATTA
1 TTAATTTAATTA
47734677 TAAAATAAGA
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
15 7 0.27
16 5 0.19
17 12 0.46
18 2 0.08
ACGTcount: A:0.44, C:0.00, G:0.04, T:0.51
Consensus pattern (15 bp):
TTAATTTAATTAAAT
Found at i:47734680 original size:17 final size:17
Alignment explanation
Indices: 47734642--47734676 Score: 56
Period size: 17 Copynumber: 2.2 Consensus size: 17
47734632 TTAATTTGAG
47734642 TTAAATTTAAATATTAA
1 TTAAATTTAAATATTAA
47734659 TTAAATTT-AAT-TTAA
1 TTAAATTTAAATATTAA
47734674 TTA
1 TTA
47734677 TAAAATAAGA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
15 7 0.39
16 3 0.17
17 8 0.44
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (17 bp):
TTAAATTTAAATATTAA
Found at i:47736857 original size:14 final size:15
Alignment explanation
Indices: 47736838--47736874 Score: 58
Period size: 15 Copynumber: 2.5 Consensus size: 15
47736828 TTGTTGCTTA
47736838 ATAACAC-ATGATTG
1 ATAACACGATGATTG
*
47736852 ATAACACGGTGATTG
1 ATAACACGATGATTG
47736867 ATAACACG
1 ATAACACG
47736875 GTGTGTGAGG
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
14 7 0.33
15 14 0.67
ACGTcount: A:0.41, C:0.16, G:0.19, T:0.24
Consensus pattern (15 bp):
ATAACACGATGATTG
Found at i:47736866 original size:15 final size:15
Alignment explanation
Indices: 47736846--47736877 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
47736836 TAATAACACA
47736846 TGATTGATAACACGG
1 TGATTGATAACACGG
47736861 TGATTGATAACACGG
1 TGATTGATAACACGG
47736876 TG
1 TG
47736878 TGTGAGGCAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.31, C:0.12, G:0.28, T:0.28
Consensus pattern (15 bp):
TGATTGATAACACGG
Found at i:47755750 original size:16 final size:16
Alignment explanation
Indices: 47755729--47755759 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
47755719 GCCAAAGGGA
47755729 CACGGTCGTGTGACAC
1 CACGGTCGTGTGACAC
47755745 CACGGTCGTGTGACA
1 CACGGTCGTGTGACA
47755760 TGCCCGTGAG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.19, C:0.29, G:0.32, T:0.19
Consensus pattern (16 bp):
CACGGTCGTGTGACAC
Found at i:47759836 original size:44 final size:44
Alignment explanation
Indices: 47759747--47759852 Score: 108
Period size: 44 Copynumber: 2.4 Consensus size: 44
47759737 GCTTCGGTTT
* **
47759747 TATG-TGGAACTAAGTGTGCAATACCGAGATAACTTTGGTTCAA
1 TATGATGGCACTAAGTGTGCAATACCGAGATAACTTTGACTCAA
* * * * *
47759790 TATGATGGCACTAAGTGTGCGATATCGATATAGCTTTGACTGAA
1 TATGATGGCACTAAGTGTGCAATACCGAGATAACTTTGACTCAA
*
47759834 TATTTAT-GCACTAAGTGTG
1 TA-TGATGGCACTAAGTGTG
47759853 TGAGTTCTTA
Statistics
Matches: 52, Mismatches: 9, Indels: 3
0.81 0.14 0.05
Matches are distributed among these distances:
43 4 0.08
44 45 0.87
45 3 0.06
ACGTcount: A:0.30, C:0.13, G:0.24, T:0.33
Consensus pattern (44 bp):
TATGATGGCACTAAGTGTGCAATACCGAGATAACTTTGACTCAA
Found at i:47772038 original size:40 final size:40
Alignment explanation
Indices: 47771961--47772178 Score: 316
Period size: 40 Copynumber: 5.5 Consensus size: 40
47771951 AAACCAAGTA
* * *
47771961 CCTTCGGGATTTAG-CCGGATATAGCT-ACTCACTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* *
47772000 CCTTCGGGACTTAGCCCAGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
47772040 CCTTCGGGACTTAGCCCGGATATAGTAACTTGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
47772080 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
47772120 CCTTCGGGGCTTAGCCCGGA-ATTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
47772160 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
47772179 TTATCATCCG
Statistics
Matches: 163, Mismatches: 13, Indels: 5
0.90 0.07 0.03
Matches are distributed among these distances:
39 15 0.09
40 148 0.91
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:47782065 original size:47 final size:45
Alignment explanation
Indices: 47781996--47782112 Score: 132
Period size: 46 Copynumber: 2.5 Consensus size: 45
47781986 GAGTTCCAAA
* *
47781996 CTCGTTGAGTTGAGTCCGAGTTC-GTGA-GATG-TAACTAGGCATCCGAG
1 CTCGTTGAGTTGAGTCCAAGTTCACTGAGGATGCTAAC---GC-T-CGAG
*
47782043 CTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCTAACGCTCGAG
1 CTCGTTGAGTTGAGTCCAAGTTCACTGA-GGATGCTAACGCTCGAG
47782089 CTCGTTGAGTTGAGTCCAAGTTCA
1 CTCGTTGAGTTGAGTCCAAGTTCA
47782113 TTTATGGGCA
Statistics
Matches: 63, Mismatches: 3, Indels: 9
0.84 0.04 0.12
Matches are distributed among these distances:
46 28 0.44
47 23 0.37
48 4 0.06
50 4 0.06
51 4 0.06
ACGTcount: A:0.21, C:0.21, G:0.28, T:0.30
Consensus pattern (45 bp):
CTCGTTGAGTTGAGTCCAAGTTCACTGAGGATGCTAACGCTCGAG
Found at i:47785650 original size:53 final size:54
Alignment explanation
Indices: 47785472--47785687 Score: 258
Period size: 55 Copynumber: 4.0 Consensus size: 54
47785462 ATTAGGGTTT
*
47785472 AAGGATACCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTC-TAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGC-ATTGGTAA-GTTTCATAAGGC
* * ** * *
47785527 AAGGATATCATGTAAGAACATTTCAAGATATGGCATTGATAAGTTTCTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTTC-ATAAGGC
* * *
47785582 AAAGG-TCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAG-TTCATAAGGC
1 -AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTTCATAAGGC
* * *
47785635 AAGGATACCATGTAAGACCATGTCAAGACATGGCAGTGGTAAGTTTCAAAAGG
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTTCATAAGG
47785688 ATACCACGTA
Statistics
Matches: 134, Mismatches: 22, Indels: 11
0.80 0.13 0.07
Matches are distributed among these distances:
52 4 0.03
53 45 0.34
54 18 0.13
55 63 0.47
56 4 0.03
ACGTcount: A:0.35, C:0.16, G:0.25, T:0.24
Consensus pattern (54 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTTCATAAGGC
Found at i:47785678 original size:108 final size:110
Alignment explanation
Indices: 47785479--47785681 Score: 313
Period size: 108 Copynumber: 1.9 Consensus size: 110
47785469 TTTAAGGATA
*
47785479 CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAGGATATCATGTAAGA
1 CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAGGATACCATGTAAGA
* * *
47785544 ACATTTCAAGATATGGCATTGATAAGTTTCTATAAGGCAAAGGTC
66 ACATGTCAAGACATGGCAGTGATAAGTTTCTATAAGGCAAAGGTC
*
47785589 CCATGTAAGACCATGCCAAGGCATGGC-ATTGGTGA-G-TTCATAAGGCAAGGATACCATGTAAG
1 CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTC-TAAGGCAAGGATACCATGTAAG
* *
47785651 ACCATGTCAAGACATGGCAGTGGTAAGTTTC
65 AACATGTCAAGACATGGCAGTGATAAGTTTC
47785682 AAAAGGATAC
Statistics
Matches: 85, Mismatches: 7, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
107 3 0.04
108 48 0.56
109 7 0.08
110 27 0.32
ACGTcount: A:0.33, C:0.17, G:0.25, T:0.25
Consensus pattern (110 bp):
CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAGGATACCATGTAAGA
ACATGTCAAGACATGGCAGTGATAAGTTTCTATAAGGCAAAGGTC
Found at i:47785837 original size:23 final size:24
Alignment explanation
Indices: 47785800--47785844 Score: 65
Period size: 23 Copynumber: 1.9 Consensus size: 24
47785790 AAGGTAAGGT
**
47785800 AAGGTAAGATGAGTT-ATGCTAAA
1 AAGGTAAGACAAGTTCATGCTAAA
47785823 AAGGTAAGACAAGTTCATGCTA
1 AAGGTAAGACAAGTTCATGCTA
47785845 GAAGAGCAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
23 13 0.68
24 6 0.32
ACGTcount: A:0.42, C:0.09, G:0.24, T:0.24
Consensus pattern (24 bp):
AAGGTAAGACAAGTTCATGCTAAA
Found at i:47793670 original size:40 final size:40
Alignment explanation
Indices: 47793616--47793712 Score: 128
Period size: 40 Copynumber: 2.4 Consensus size: 40
47793606 TAAATCGGTA
*
47793616 TCGCACACTTAGTGCC-TTCTATAGCCGAAG-ATATGCCAAC
1 TCGCACACTTAGTGCCATT-TATAGCCGAAGCATAT-CAAAC
*
47793656 TCGCACACTTAGTGCCATTTATAGCCGAAGCTATATTAAAC
1 TCGCACACTTAGTGCCATTTATAGCCGAAGC-ATATCAAAC
47793697 -CGCACACTTAGTGCCA
1 TCGCACACTTAGTGCCA
47793713 ATCATAGTCG
Statistics
Matches: 52, Mismatches: 2, Indels: 6
0.87 0.03 0.10
Matches are distributed among these distances:
40 43 0.83
41 5 0.10
42 4 0.08
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.26
Consensus pattern (40 bp):
TCGCACACTTAGTGCCATTTATAGCCGAAGCATATCAAAC
Found at i:47803634 original size:33 final size:33
Alignment explanation
Indices: 47803579--47803656 Score: 95
Period size: 33 Copynumber: 2.4 Consensus size: 33
47803569 TGGCCCTACC
* *
47803579 ATGGTCTTACATTCGTAGTGCCATAACCCGGCT
1 ATGGTCTTACATTCGTAATGCCATAACCCAGCT
* * *
47803612 ATGGTCTTATCATTTG-AATGCCATAGCCTAGCT
1 ATGGTCTTA-CATTCGTAATGCCATAACCCAGCT
47803645 ATGGTCTTACAT
1 ATGGTCTTACAT
47803657 ACAAATACTG
Statistics
Matches: 39, Mismatches: 5, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
32 3 0.08
33 31 0.79
34 5 0.13
ACGTcount: A:0.23, C:0.23, G:0.19, T:0.35
Consensus pattern (33 bp):
ATGGTCTTACATTCGTAATGCCATAACCCAGCT
Found at i:47808715 original size:6 final size:6
Alignment explanation
Indices: 47808704--47808732 Score: 51
Period size: 6 Copynumber: 5.0 Consensus size: 6
47808694 AACAGTTGTG
47808704 ATAATT ATAATT ATAATT ATAATT -TAATT
1 ATAATT ATAATT ATAATT ATAATT ATAATT
47808733 TACAATTATT
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
5 5 0.22
6 18 0.78
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (6 bp):
ATAATT
Found at i:47808739 original size:18 final size:18
Alignment explanation
Indices: 47808704--47808741 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
47808694 AACAGTTGTG
*
47808704 ATAATTATAATTATAATT
1 ATAATTATAATTACAATT
47808722 ATAATT-TAATTTACAATT
1 ATAATTATAA-TTACAATT
47808740 AT
1 AT
47808742 TAGTAAAAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
17 3 0.17
18 15 0.83
ACGTcount: A:0.47, C:0.03, G:0.00, T:0.50
Consensus pattern (18 bp):
ATAATTATAATTACAATT
Found at i:47809031 original size:6 final size:6
Alignment explanation
Indices: 47809020--47809048 Score: 51
Period size: 6 Copynumber: 5.0 Consensus size: 6
47809010 AAAAATTGTG
47809020 ATAATT ATAATT ATAATT ATAATT -TAATT
1 ATAATT ATAATT ATAATT ATAATT ATAATT
47809049 TACAGTTATT
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
5 5 0.22
6 18 0.78
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (6 bp):
ATAATT
Found at i:47809177 original size:25 final size:26
Alignment explanation
Indices: 47809132--47809182 Score: 70
Period size: 25 Copynumber: 2.0 Consensus size: 26
47809122 TTTTTTGGCC
*
47809132 TAAAGAAATTTGTGTTAAATTTTTTT
1 TAAAGAAATTTGTGCTAAATTTTTTT
47809158 TAAA-AAATATTGTGCT-AATTTTTTT
1 TAAAGAAAT-TTGTGCTAAATTTTTTT
47809183 GATGTAAAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
25 13 0.57
26 10 0.43
ACGTcount: A:0.35, C:0.02, G:0.10, T:0.53
Consensus pattern (26 bp):
TAAAGAAATTTGTGCTAAATTTTTTT
Found at i:47809951 original size:17 final size:17
Alignment explanation
Indices: 47809929--47809962 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
47809919 ATTAAATATG
47809929 TTTATTAATTTAATTTA
1 TTTATTAATTTAATTTA
* *
47809946 TTTATTTATTTATTTTA
1 TTTATTAATTTAATTTA
47809963 AATATCATTC
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (17 bp):
TTTATTAATTTAATTTA
Found at i:47819612 original size:48 final size:50
Alignment explanation
Indices: 47819558--47819791 Score: 332
Period size: 50 Copynumber: 4.8 Consensus size: 50
47819548 GGGTTATGTA
* * * * *
47819558 TGAGCCAGTGTAAGACCATATTTGGAACATGGCATTGGCATTG-T-TATG
1 TGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCACTGCTGTATG
* * *
47819606 TGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTG-T-TATG
1 TGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCACTGCTGTATG
47819654 TGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCACTGCTGTATG
1 TGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCACTGCTGTATG
* *
47819704 AGAGCCAGTGTAAGACAATGTCTGGGACATGGCATCGGCACTGCTGTATG
1 TGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCACTGCTGTATG
* *
47819754 AGAGCCAGTGTAAGACAATGTCTGGGACATGGCATCGG
1 TGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGG
47819792 TATTTTACCC
Statistics
Matches: 177, Mismatches: 7, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
48 86 0.49
49 1 0.01
50 90 0.51
ACGTcount: A:0.26, C:0.18, G:0.31, T:0.25
Consensus pattern (50 bp):
TGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCACTGCTGTATG
Found at i:47819735 original size:98 final size:98
Alignment explanation
Indices: 47819558--47819791 Score: 328
Period size: 98 Copynumber: 2.4 Consensus size: 98
47819548 GGGTTATGTA
* * * * * * *
47819558 TGAGCCAGTGTAAGACCATATTTGGAACATGGCATTGGCATTGTTATGTGAGCCAGTGTAAGACC
1 TGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCACTGTTATGAGAGCCAGTGTAAGACA
* *
47819623 ATGTTTGGAACATGGCATCGGCATTG-T-TATG
66 ATGTCTGGAACATGGCATCGGCACTGCTGTATG
47819654 TGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCACTGCTGTATGAGAGCCAGTGTAAGA
1 TGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCACTG-T-TATGAGAGCCAGTGTAAGA
*
47819719 CAATGTCTGGGACATGGCATCGGCACTGCTGTATG
64 CAATGTCTGGAACATGGCATCGGCACTGCTGTATG
* *
47819754 AGAGCCAGTGTAAGACAATGTCTGGGACATGGCATCGG
1 TGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGG
47819792 TATTTTACCC
Statistics
Matches: 122, Mismatches: 12, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
96 38 0.31
97 1 0.01
98 42 0.34
99 1 0.01
100 40 0.33
ACGTcount: A:0.26, C:0.18, G:0.31, T:0.25
Consensus pattern (98 bp):
TGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCACTGTTATGAGAGCCAGTGTAAGACA
ATGTCTGGAACATGGCATCGGCACTGCTGTATG
Found at i:47820521 original size:70 final size:70
Alignment explanation
Indices: 47820410--47820552 Score: 268
Period size: 70 Copynumber: 2.0 Consensus size: 70
47820400 TAGAAACAAT
*
47820410 CAAGAACATCATCCGAATCTCGTACTGTGAGATAATTAATTTTTAGTAAAGAACGATCGAAGCTG
1 CAAGAACATCATCCGAATCCCGTACTGTGAGATAATTAATTTTTAGTAAAGAACGATCGAAGCTG
47820475 TCAAA
66 TCAAA
*
47820480 CAAGAACATCATCCGAATCCCGTACTGTGAGATAATTAATTTTTAGTAAAGAACGGTCGAAGCTG
1 CAAGAACATCATCCGAATCCCGTACTGTGAGATAATTAATTTTTAGTAAAGAACGATCGAAGCTG
47820545 TCAAA
66 TCAAA
47820550 CAA
1 CAA
47820553 CAGAACAGGG
Statistics
Matches: 71, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
70 71 1.00
ACGTcount: A:0.38, C:0.18, G:0.17, T:0.26
Consensus pattern (70 bp):
CAAGAACATCATCCGAATCCCGTACTGTGAGATAATTAATTTTTAGTAAAGAACGATCGAAGCTG
TCAAA
Found at i:47831687 original size:46 final size:46
Alignment explanation
Indices: 47831633--47831808 Score: 198
Period size: 46 Copynumber: 3.8 Consensus size: 46
47831623 TGGTTGAGTA
47831633 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
47831679 TCCAAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* * *
47831724 CATACGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
47831772 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
47831809 GCGGGTTACA
Statistics
Matches: 107, Mismatches: 14, Indels: 18
0.77 0.10 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 61 0.57
47 27 0.25
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:47835031 original size:16 final size:16
Alignment explanation
Indices: 47835010--47835041 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
47835000 GTATGGTAAG
47835010 TATTTATATAATTAAT
1 TATTTATATAATTAAT
*
47835026 TATTTATATCATTAAT
1 TATTTATATAATTAAT
47835042 GAGATGTTGT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.41, C:0.03, G:0.00, T:0.56
Consensus pattern (16 bp):
TATTTATATAATTAAT
Found at i:47837732 original size:35 final size:35
Alignment explanation
Indices: 47837653--47837792 Score: 140
Period size: 35 Copynumber: 4.0 Consensus size: 35
47837643 TTAAGGACAA
* * *
47837653 ATCCCACCACAACACCAATACTTC-TTTCATAACAT
1 ATCCCACCACAACATCAATACTTCATTT-ATCACAC
* * *
47837688 ATCCTACCACAACATCGATACTTCATTTATCATAC
1 ATCCCACCACAACATCAATACTTCATTTATCACAC
*
47837723 ATCCCACCACAACA-CTAATACTTCACTTATCACAC
1 ATCCCACCACAACATC-AATACTTCATTTATCACAC
*** **
47837758 ATCTTGCCACAACATCAATACTTCATCCATCACAC
1 ATCCCACCACAACATCAATACTTCATTTATCACAC
47837793 TTCTTTCATA
Statistics
Matches: 86, Mismatches: 16, Indels: 6
0.80 0.15 0.06
Matches are distributed among these distances:
34 1 0.01
35 81 0.94
36 4 0.05
ACGTcount: A:0.36, C:0.36, G:0.01, T:0.26
Consensus pattern (35 bp):
ATCCCACCACAACATCAATACTTCATTTATCACAC
Found at i:47837768 original size:70 final size:70
Alignment explanation
Indices: 47837653--47837783 Score: 183
Period size: 70 Copynumber: 1.9 Consensus size: 70
47837643 TTAAGGACAA
* * *
47837653 ATCCCACCACAACACCAATACTTCTTTCATAACATATCCTACCACAACATCGATACTTCATTTAT
1 ATCCCACCACAACACCAATACTTCCTTCATAACACATCCTACCACAACATCAATACTTCATTTAT
47837718 CATAC
66 CATAC
* * * *
47837723 ATCCCACCACAACACTAATACTTCACTT-ATCACACATCTTGCCACAACATCAATACTTCAT
1 ATCCCACCACAACACCAATACTTC-CTTCATAACACATCCTACCACAACATCAATACTTCAT
47837784 CCATCACACT
Statistics
Matches: 53, Mismatches: 7, Indels: 2
0.85 0.11 0.03
Matches are distributed among these distances:
70 51 0.96
71 2 0.04
ACGTcount: A:0.36, C:0.35, G:0.02, T:0.27
Consensus pattern (70 bp):
ATCCCACCACAACACCAATACTTCCTTCATAACACATCCTACCACAACATCAATACTTCATTTAT
CATAC
Found at i:47845750 original size:40 final size:42
Alignment explanation
Indices: 47845701--47845778 Score: 99
Period size: 40 Copynumber: 1.9 Consensus size: 42
47845691 CTTTGATTCA
*
47845701 CACTACGATGCCTCTG-CTTGCA-CAATTG-TGCCTCTGTTTG
1 CACTACGATGCCTCTGTATTGCATCAA-TGATGCCTCTGTTTG
* *
47845741 CACTTCGATGCTTCTGTATTGCATCAATGATGCCTCTG
1 CACTACGATGCCTCTGTATTGCATCAATGATGCCTCTG
47845779 GTGTGGTGTA
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 14 0.44
41 7 0.22
42 11 0.34
ACGTcount: A:0.17, C:0.28, G:0.19, T:0.36
Consensus pattern (42 bp):
CACTACGATGCCTCTGTATTGCATCAATGATGCCTCTGTTTG
Found at i:47846934 original size:44 final size:44
Alignment explanation
Indices: 47846866--47846951 Score: 129
Period size: 44 Copynumber: 2.0 Consensus size: 44
47846856 TGTGTTTTCC
* *
47846866 TGAGTAAATCCTTAACCTGACCTAAAGGGATTAAGTTTAATTAT
1 TGAGTAAAGCATTAACCTGACCTAAAGGGATTAAGTTTAATTAT
*
47846910 TGAGTAAAGCATTAACCT-AGCCTAAAGGGCTTAAGTTTAATT
1 TGAGTAAAGCATTAACCTGA-CCTAAAGGGATTAAGTTTAATT
47846952 TTTGTATTTG
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
43 1 0.03
44 37 0.97
ACGTcount: A:0.36, C:0.14, G:0.17, T:0.33
Consensus pattern (44 bp):
TGAGTAAAGCATTAACCTGACCTAAAGGGATTAAGTTTAATTAT
Found at i:47851822 original size:90 final size:90
Alignment explanation
Indices: 47851717--47851898 Score: 355
Period size: 90 Copynumber: 2.0 Consensus size: 90
47851707 GATGGTGGGC
47851717 AAAAATGGACATGAAATAGGTGAAATAGAATAATTTTAAGTTAGGGGTATTTTGATCATTTAATA
1 AAAAATGGACATGAAATAGGTGAAATAGAATAATTTTAAGTTAGGGGTATTTTGATCATTTAATA
47851782 ATTAATTGATAAATAAACAAAATAA
66 ATTAATTGATAAATAAACAAAATAA
*
47851807 AAAAATGGACCTGAAATAGGTGAAATAGAATAATTTTAAGTTAGGGGTATTTTGATCATTTAATA
1 AAAAATGGACATGAAATAGGTGAAATAGAATAATTTTAAGTTAGGGGTATTTTGATCATTTAATA
47851872 ATTAATTGATAAATAAACAAAATAA
66 ATTAATTGATAAATAAACAAAATAA
47851897 AA
1 AA
47851899 GCCAAATTTT
Statistics
Matches: 91, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
90 91 1.00
ACGTcount: A:0.49, C:0.04, G:0.15, T:0.32
Consensus pattern (90 bp):
AAAAATGGACATGAAATAGGTGAAATAGAATAATTTTAAGTTAGGGGTATTTTGATCATTTAATA
ATTAATTGATAAATAAACAAAATAA
Found at i:47865711 original size:42 final size:44
Alignment explanation
Indices: 47865633--47865766 Score: 148
Period size: 42 Copynumber: 3.1 Consensus size: 44
47865623 TATCGAAATG
*
47865633 TGATATTCGGGCTTTGGGCCTAGCAGGCTATAATGCCGGTGAAA
1 TGATATTCGGGCTTTGAGCCTAGCAGGCTATAATGCCGGTGAAA
* * *
47865677 TGATA-TCGGGCTTTGAG-CTTGTAGGCTATGATGCCGGTGAAA
1 TGATATTCGGGCTTTGAGCCTAGCAGGCTATAATGCCGGTGAAA
* * * * *
47865719 T-ATTAATCGAGCCTTTGAGCCTAGCAAGCTAAAATGTCGGTGAAA
1 TGA-TATTCG-GGCTTTGAGCCTAGCAGGCTATAATGCCGGTGAAA
47865764 TGA
1 TGA
47865767 AATGTTATGT
Statistics
Matches: 74, Mismatches: 11, Indels: 8
0.80 0.12 0.09
Matches are distributed among these distances:
41 1 0.01
42 25 0.34
43 14 0.19
44 13 0.18
45 20 0.27
46 1 0.01
ACGTcount: A:0.26, C:0.16, G:0.29, T:0.28
Consensus pattern (44 bp):
TGATATTCGGGCTTTGAGCCTAGCAGGCTATAATGCCGGTGAAA
Found at i:47866208 original size:38 final size:38
Alignment explanation
Indices: 47866063--47866226 Score: 220
Period size: 38 Copynumber: 4.3 Consensus size: 38
47866053 AGGCTATATA
* * *
47866063 CTGGAATTATATCCCGGTTAAATCCCGCAGGCTTCATG
1 CTGGTATTATATCCGGGTTAAATCCCGCAGGCTTCGTG
* *
47866101 CTGGTAATATATCCGGGTTAAATCTCGCAGGCTTCGTG
1 CTGGTATTATATCCGGGTTAAATCCCGCAGGCTTCGTG
* *
47866139 CTGGTAATATATCCGGGTTAATTCCCGCAGGCTTCGTG
1 CTGGTATTATATCCGGGTTAAATCCCGCAGGCTTCGTG
* ** * *
47866177 CTGGTATTATATCTGGGTTAAATCCTACAGGCCTAGTG
1 CTGGTATTATATCCGGGTTAAATCCCGCAGGCTTCGTG
47866215 CTGGTATTATAT
1 CTGGTATTATAT
47866227 TCGAGCCTTT
Statistics
Matches: 112, Mismatches: 14, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
38 112 1.00
ACGTcount: A:0.22, C:0.21, G:0.24, T:0.33
Consensus pattern (38 bp):
CTGGTATTATATCCGGGTTAAATCCCGCAGGCTTCGTG
Found at i:47866349 original size:45 final size:45
Alignment explanation
Indices: 47866224--47866349 Score: 182
Period size: 45 Copynumber: 2.8 Consensus size: 45
47866214 GCTGGTATTA
* * * *
47866224 TATTCGAGCCTTTAAGCCTAGCAGGCTATTATGCCAGTGAGACAC
1 TATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGACAC
* *
47866269 TATTCGGGCCTTTGGGCCTAGCAGGCTATAATGCCGGTGAGATAC
1 TATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGACAC
47866314 TATTCGGG-CTTTCGAGCCTAGCAGGCTATAATGCCG
1 TATTCGGGCCTTT-GAGCCTAGCAGGCTATAATGCCG
47866350 ATGAAATGAT
Statistics
Matches: 73, Mismatches: 7, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
44 4 0.05
45 69 0.95
ACGTcount: A:0.22, C:0.24, G:0.27, T:0.27
Consensus pattern (45 bp):
TATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGACAC
Found at i:47871088 original size:42 final size:42
Alignment explanation
Indices: 47871029--47871136 Score: 130
Period size: 42 Copynumber: 2.6 Consensus size: 42
47871019 CACACGAAAA
*
47871029 AAGGACACGAGCATGTGTCTAGGCCATGTGAGCCACAC-GGC
1 AAGGACACGAGCATGTGTCCAGGCCATGTGAGCCACACAGGC
* * *
47871070 TAAGGACACGGGCGTGTGTCCAGGCCGTGTGAGCCACACAGGC
1 -AAGGACACGAGCATGTGTCCAGGCCATGTGAGCCACACAGGC
* *
47871113 AAGGACA-TAGGCAAGTGTCCAGGC
1 AAGGACACGA-GCATGTGTCCAGGC
47871137 TGTATGGCAT
Statistics
Matches: 56, Mismatches: 8, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
42 53 0.95
43 3 0.05
ACGTcount: A:0.26, C:0.26, G:0.34, T:0.14
Consensus pattern (42 bp):
AAGGACACGAGCATGTGTCCAGGCCATGTGAGCCACACAGGC
Found at i:47875163 original size:5 final size:5
Alignment explanation
Indices: 47875153--47875180 Score: 56
Period size: 5 Copynumber: 5.6 Consensus size: 5
47875143 TATAGAGATA
47875153 AAAAT AAAAT AAAAT AAAAT AAAAT AAA
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAA
47875181 TAATAGGTGT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.82, C:0.00, G:0.00, T:0.18
Consensus pattern (5 bp):
AAAAT
Found at i:47876545 original size:13 final size:13
Alignment explanation
Indices: 47876519--47876548 Score: 53
Period size: 12 Copynumber: 2.4 Consensus size: 13
47876509 GAAAAAGAAG
47876519 AATTAGTAATAAA
1 AATTAGTAATAAA
47876532 AATTA-TAATAAA
1 AATTAGTAATAAA
47876544 AATTA
1 AATTA
47876549 AATTGCAGTA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 12 0.71
13 5 0.29
ACGTcount: A:0.63, C:0.00, G:0.03, T:0.33
Consensus pattern (13 bp):
AATTAGTAATAAA
Found at i:47899670 original size:46 final size:48
Alignment explanation
Indices: 47899566--47899884 Score: 234
Period size: 46 Copynumber: 6.7 Consensus size: 48
47899556 TTTGTATGCT
* * * *
47899566 AGTGTAAGACCATGTCTGGGACATGGCATCGACATTGAAACG-AGAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCATCGAGACGTA-AGCC
* * *
47899614 AGTGTGAGA-CATGTTTGGGACAT-GCATCGGCATCGTGACGTAAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCATCGAGACGTAAGCC
* * * *
47899660 AGTGTAAGA-CATGTCTAGAACAT-GCATCGGC-TACGAGATGT--GTC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCAT-CGAGACGTAAGCC
* * * **
47899704 AGTGTAAGACCCTGTCTGGGACATGGCATCGGCA-CGGATATGTGAGAGTT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCATC-GAGACGT-A-AGCC
* **
47899754 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGATTTTGAC-T--GTT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCATCGA----GACGTAAGCC
* * * * *
47899803 AGTGTAAGACCATGTCTGGGGCATGGCATCGAC-TTGATGA-ATGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCATCGA-GACGTAAGCC
47899850 AGTGTAAGACCATGTCTGGGACATGGCATCGGCAT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCAT
47899885 TACACCCTGT
Statistics
Matches: 222, Mismatches: 30, Indels: 38
0.77 0.10 0.13
Matches are distributed among these distances:
44 11 0.05
45 17 0.08
46 63 0.28
47 46 0.21
48 12 0.05
49 34 0.15
50 36 0.16
51 1 0.00
53 1 0.00
54 1 0.00
ACGTcount: A:0.26, C:0.19, G:0.31, T:0.24
Consensus pattern (48 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGGCATCGAGACGTAAGCC
Found at i:47903193 original size:13 final size:13
Alignment explanation
Indices: 47903175--47903204 Score: 60
Period size: 13 Copynumber: 2.3 Consensus size: 13
47903165 CGGTGTACTT
47903175 CACACGGCCTGGA
1 CACACGGCCTGGA
47903188 CACACGGCCTGGA
1 CACACGGCCTGGA
47903201 CACA
1 CACA
47903205 TGCCCATGTC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.27, C:0.40, G:0.27, T:0.07
Consensus pattern (13 bp):
CACACGGCCTGGA
Found at i:47907857 original size:19 final size:19
Alignment explanation
Indices: 47907833--47907873 Score: 82
Period size: 19 Copynumber: 2.2 Consensus size: 19
47907823 ATACTTTTTT
47907833 TCATAAAATATTGATACCA
1 TCATAAAATATTGATACCA
47907852 TCATAAAATATTGATACCA
1 TCATAAAATATTGATACCA
47907871 TCA
1 TCA
47907874 ACTAGTTATC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.46, C:0.17, G:0.05, T:0.32
Consensus pattern (19 bp):
TCATAAAATATTGATACCA
Found at i:47909406 original size:32 final size:32
Alignment explanation
Indices: 47909366--47909430 Score: 130
Period size: 32 Copynumber: 2.0 Consensus size: 32
47909356 ATTCTCAATG
47909366 TAATTAAAGAATGAAGTTGATTTAACTTGTTT
1 TAATTAAAGAATGAAGTTGATTTAACTTGTTT
47909398 TAATTAAAGAATGAAGTTGATTTAACTTGTTT
1 TAATTAAAGAATGAAGTTGATTTAACTTGTTT
47909430 T
1 T
47909431 GGCAATGAAT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.37, C:0.03, G:0.15, T:0.45
Consensus pattern (32 bp):
TAATTAAAGAATGAAGTTGATTTAACTTGTTT
Found at i:47911060 original size:25 final size:25
Alignment explanation
Indices: 47911032--47911083 Score: 68
Period size: 25 Copynumber: 2.1 Consensus size: 25
47911022 TTTGGCTTGA
**
47911032 CATTTACTAAGCAATATCGGATATT
1 CATTTACTAAGCAATATCAAATATT
* *
47911057 CATTTATTACGCAATATCAAATATT
1 CATTTACTAAGCAATATCAAATATT
47911082 CA
1 CA
47911084 AATTATTCTT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.38, C:0.17, G:0.08, T:0.37
Consensus pattern (25 bp):
CATTTACTAAGCAATATCAAATATT
Found at i:47914614 original size:17 final size:17
Alignment explanation
Indices: 47914592--47914625 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
47914582 AGATGATGAA
47914592 GAGAAATGCTTTCTCTT
1 GAGAAATGCTTTCTCTT
47914609 GAGAAATGCTTTCTCTT
1 GAGAAATGCTTTCTCTT
47914626 TCTCTCCAAC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.24, C:0.18, G:0.18, T:0.41
Consensus pattern (17 bp):
GAGAAATGCTTTCTCTT
Found at i:47915477 original size:5 final size:5
Alignment explanation
Indices: 47915461--47915493 Score: 59
Period size: 5 Copynumber: 6.8 Consensus size: 5
47915451 CTCGAGAAAT
47915461 TAATA T-ATA TAATA TAATA TAATA TAATA TAAT
1 TAATA TAATA TAATA TAATA TAATA TAATA TAAT
47915494 TTAACACTAT
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
4 4 0.15
5 23 0.85
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (5 bp):
TAATA
Found at i:47929185 original size:51 final size:50
Alignment explanation
Indices: 47929066--47929196 Score: 151
Period size: 49 Copynumber: 2.6 Consensus size: 50
47929056 ATGTCACTGG
* *
47929066 TGACT-CAAGTGTGGTACTATGTCAAGGACACTTTGAGAAGATATAACTT
1 TGACTACAAGTGTGGTACTATGTGAAGGCCACTTTGAGAAGATATAACTT
* * * *
47929115 GGTC-ACAAGTGTGGTACTATGTGAAGGCCACTTTGTGAAGA-AGGTAGCTT
1 TGACTACAAGTGTGGTACTATGTGAAGGCCACTTTGAGAAGATA--TAACTT
* *
47929165 TGACTACAAGGGTGGTACTATGTGCAGGCCAC
1 TGACTACAAGTGTGGTACTATGTGAAGGCCAC
47929197 CGGGTATCCG
Statistics
Matches: 68, Mismatches: 10, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
48 1 0.01
49 35 0.51
50 7 0.10
51 25 0.37
ACGTcount: A:0.28, C:0.16, G:0.28, T:0.27
Consensus pattern (50 bp):
TGACTACAAGTGTGGTACTATGTGAAGGCCACTTTGAGAAGATATAACTT
Found at i:47932371 original size:94 final size:94
Alignment explanation
Indices: 47932248--47932435 Score: 304
Period size: 94 Copynumber: 2.0 Consensus size: 94
47932238 AGAATTGAGC
* * * * *
47932248 ACACGAGCGTGTGTCTCAGCCGTGTGTGCTACATGGCCTAGAATAAGAGCGTGTGTCTTGGCCAT
1 ACACAAGCATGTGTCTCAACCGTGTGTGCTACACGGCCTAGAACAAGAGCGTGTGTCTTGGCCAT
47932313 GTGAAACCTGCACCTTAATGTTTTACAAG
66 GTGAAACCTGCACCTTAATGTTTTACAAG
* * *
47932342 ACACAAGCATGTGTCTCAACTGTGTGTGCTACACGGCCTAGAACAAGGGTGTGTGTCTTGGCCAT
1 ACACAAGCATGTGTCTCAACCGTGTGTGCTACACGGCCTAGAACAAGAGCGTGTGTCTTGGCCAT
47932407 GTGAAACCTGCACCTTAATGTTTTACAAG
66 GTGAAACCTGCACCTTAATGTTTTACAAG
47932436 TCAGAGAGTT
Statistics
Matches: 86, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
94 86 1.00
ACGTcount: A:0.24, C:0.22, G:0.26, T:0.28
Consensus pattern (94 bp):
ACACAAGCATGTGTCTCAACCGTGTGTGCTACACGGCCTAGAACAAGAGCGTGTGTCTTGGCCAT
GTGAAACCTGCACCTTAATGTTTTACAAG
Found at i:47934910 original size:39 final size:39
Alignment explanation
Indices: 47934856--47934934 Score: 140
Period size: 39 Copynumber: 2.0 Consensus size: 39
47934846 AAATACTTAG
*
47934856 TAAGCTCATACAATATAAATGATTACATACCTCAATTAC
1 TAAGCTCATACAATATAAATAATTACATACCTCAATTAC
*
47934895 TAAGCTCATACAATATAAATAATTATATACCTCAATTAC
1 TAAGCTCATACAATATAAATAATTACATACCTCAATTAC
47934934 T
1 T
47934935 TATCACACAT
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 38 1.00
ACGTcount: A:0.44, C:0.19, G:0.04, T:0.33
Consensus pattern (39 bp):
TAAGCTCATACAATATAAATAATTACATACCTCAATTAC
Found at i:47936245 original size:15 final size:14
Alignment explanation
Indices: 47936208--47936247 Score: 55
Period size: 15 Copynumber: 2.8 Consensus size: 14
47936198 TTACTTTTAT
47936208 ACTTAAATTAACTTA
1 ACTT-AATTAACTTA
47936223 AC-TAATTAACATTA
1 ACTTAATTAAC-TTA
47936237 ACTTAATTAAC
1 ACTTAATTAAC
47936248 CTTTAATTAA
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
13 7 0.30
14 6 0.26
15 10 0.43
ACGTcount: A:0.47, C:0.15, G:0.00, T:0.38
Consensus pattern (14 bp):
ACTTAATTAACTTA
Found at i:47942125 original size:16 final size:17
Alignment explanation
Indices: 47942094--47942133 Score: 55
Period size: 16 Copynumber: 2.4 Consensus size: 17
47942084 AAGTATAACT
47942094 TAAATTTTTATGAAAAA
1 TAAATTTTTATGAAAAA
* *
47942111 TAAATTTTT-TTAAAAT
1 TAAATTTTTATGAAAAA
47942127 TAAATTT
1 TAAATTT
47942134 GAGTGTAATT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
16 12 0.57
17 9 0.43
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (17 bp):
TAAATTTTTATGAAAAA
Found at i:47945984 original size:24 final size:25
Alignment explanation
Indices: 47945957--47946005 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 25
47945947 GTTTTTTTAT
*
47945957 TAAATAAAAAAC-TTTAAAATATAA
1 TAAATAAAAAACATTTAAAACATAA
* *
47945981 TAAATCAAATACATTTAAAACATAA
1 TAAATAAAAAACATTTAAAACATAA
47946006 AAACAAATAT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
24 10 0.48
25 11 0.52
ACGTcount: A:0.63, C:0.08, G:0.00, T:0.29
Consensus pattern (25 bp):
TAAATAAAAAACATTTAAAACATAA
Found at i:47945998 original size:25 final size:23
Alignment explanation
Indices: 47945969--47946033 Score: 75
Period size: 25 Copynumber: 2.9 Consensus size: 23
47945959 AATAAAAAAC
*
47945969 TTTAAAATATAATAAATCAAATACA
1 TTTAAAACATAA-AAA-CAAATACA
47945994 TTTAAAACATAAAAACAAAT--A
1 TTTAAAACATAAAAACAAATACA
47946015 -TTAAAACA-AAAAACAAATA
1 TTTAAAACATAAAAACAAATA
47946034 AAAAATAAGA
Statistics
Matches: 38, Mismatches: 1, Indels: 7
0.83 0.02 0.15
Matches are distributed among these distances:
19 10 0.26
20 8 0.21
21 1 0.03
23 5 0.13
24 3 0.08
25 11 0.29
ACGTcount: A:0.66, C:0.09, G:0.00, T:0.25
Consensus pattern (23 bp):
TTTAAAACATAAAAACAAATACA
Found at i:47946028 original size:19 final size:20
Alignment explanation
Indices: 47945995--47946033 Score: 71
Period size: 19 Copynumber: 2.0 Consensus size: 20
47945985 TCAAATACAT
47945995 TTAAAACATAAAAACAAATA
1 TTAAAACATAAAAACAAATA
47946015 TTAAAACA-AAAAACAAATA
1 TTAAAACATAAAAACAAATA
47946034 AAAAATAAGA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 11 0.58
20 8 0.42
ACGTcount: A:0.72, C:0.10, G:0.00, T:0.18
Consensus pattern (20 bp):
TTAAAACATAAAAACAAATA
Found at i:47946072 original size:12 final size:12
Alignment explanation
Indices: 47946035--47946089 Score: 51
Period size: 11 Copynumber: 4.8 Consensus size: 12
47946025 AAACAAATAA
*
47946035 AAAATAAGAC-T
1 AAAATAAAACAT
** *
47946046 AAAATAATTCTT
1 AAAATAAAACAT
47946058 AAAATAAAACAT
1 AAAATAAAACAT
*
47946070 AAATTAAAA-AT
1 AAAATAAAACAT
47946081 AAAATAAAA
1 AAAATAAAA
47946090 AGTAATTATA
Statistics
Matches: 36, Mismatches: 7, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
11 18 0.50
12 18 0.50
ACGTcount: A:0.69, C:0.05, G:0.02, T:0.24
Consensus pattern (12 bp):
AAAATAAAACAT
Found at i:47960994 original size:43 final size:43
Alignment explanation
Indices: 47960938--47961111 Score: 215
Period size: 43 Copynumber: 4.0 Consensus size: 43
47960928 ATATCGTACA
** *
47960938 ATGCCAACATCCCAGACGTGGTCTTACATGTAATCATATATCG
1 ATGCCAATGTCCCAGACGTGGTCTTACATGTAATCACATATCG
* *
47960981 ATGCCACTGTCCCAGACAG-GGTCTTACATGTAATCACATAACG
1 ATGCCAATGTCCCAGAC-GTGGTCTTACATGTAATCACATATCG
* * * **
47961024 ATGCCAATGTCCCAGACATGGTCGTAAATGTAATCACATATTA
1 ATGCCAATGTCCCAGACGTGGTCTTACATGTAATCACATATCG
* * *
47961067 ATGCCAATGTCCCAGATGTGATCTTACACGTAATCACATATCG
1 ATGCCAATGTCCCAGACGTGGTCTTACATGTAATCACATATCG
47961110 AT
1 AT
47961112 ATCACATATC
Statistics
Matches: 109, Mismatches: 20, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
43 108 0.99
44 1 0.01
ACGTcount: A:0.32, C:0.25, G:0.17, T:0.27
Consensus pattern (43 bp):
ATGCCAATGTCCCAGACGTGGTCTTACATGTAATCACATATCG
Found at i:47965607 original size:46 final size:46
Alignment explanation
Indices: 47965540--47965628 Score: 178
Period size: 46 Copynumber: 1.9 Consensus size: 46
47965530 GCTTGCTTAA
47965540 CTTCTCCCTCTATACTACTTAAAATTGGCCTAGAATCATCCAGTAG
1 CTTCTCCCTCTATACTACTTAAAATTGGCCTAGAATCATCCAGTAG
47965586 CTTCTCCCTCTATACTACTTAAAATTGGCCTAGAATCATCCAG
1 CTTCTCCCTCTATACTACTTAAAATTGGCCTAGAATCATCCAG
47965629 CACTGCCTCC
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
46 43 1.00
ACGTcount: A:0.28, C:0.29, G:0.10, T:0.33
Consensus pattern (46 bp):
CTTCTCCCTCTATACTACTTAAAATTGGCCTAGAATCATCCAGTAG
Found at i:47968944 original size:49 final size:49
Alignment explanation
Indices: 47968868--47969183 Score: 196
Period size: 49 Copynumber: 6.7 Consensus size: 49
47968858 TAAGTTGCCA
47968868 ATGCCATGTCCCAGACATGGTCTTACACTGGCTATCTTTATCAAGGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTATCTTTATCAAGGCCG
* * * * **
47968917 ATGCCATGTCCCAGACATGGTCATACACTAGCTCTCATGTAT-AAGTGTTG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTATC-TTTATCAAG-GCCG
** * ** * *
47968967 ATG-CATGTCTAAGACAT-GTCTTACACTAGC-A-C-GAAGCTTA-GCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTATCTTTATC-AAGGCCG
* * * * *
47969011 ATG-CATGTCCCAGACA-CGTCTTACACTGGC-A-CTCATCTCTACGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTATCT-TTATCAAGGCCG
* * * ** *
47969057 ATGCCATGTCCCAGACATGGTCTTACATTGGCTATCGTAAT-GTGGCTG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTATCTTTATCAAGGCCG
** * * * **
47969105 ATG-CATGTCCCAGA-AACGTCTTACACTAGC--CCTTATCTCAATCCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTATCTT-TATCAAGGCCG
47969151 ATGCCATGTCCCAGACATGGTCTTACACTGGCT
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCT
47969184 CTCACATAAC
Statistics
Matches: 202, Mismatches: 48, Indels: 34
0.71 0.17 0.12
Matches are distributed among these distances:
44 34 0.17
45 3 0.01
46 27 0.13
47 35 0.17
48 43 0.21
49 50 0.25
50 10 0.05
ACGTcount: A:0.24, C:0.29, G:0.20, T:0.28
Consensus pattern (49 bp):
ATGCCATGTCCCAGACATGGTCTTACACTGGCTATCTTTATCAAGGCCG
Found at i:47969018 original size:44 final size:46
Alignment explanation
Indices: 47968966--47969179 Score: 143
Period size: 47 Copynumber: 4.6 Consensus size: 46
47968956 TATAAGTGTT
**
47968966 GATGCATGTCTAAGACATGTCTTACACTAGCACGAAGCT-TA-GCC
1 GATGCATGTCCCAGACATGTCTTACACTAGCACGAAGCTCTACGCC
* * ** *
47969010 GATGCATGTCCCAGACACGTCTTACACTGGCACTCATCTCTACGCC
1 GATGCATGTCCCAGACATGTCTTACACTAGCACGAAGCTCTACGCC
* * * * *
47969056 GATGCCATGTCCCAGACATGGTCTTACATTGGCTATCGTAA--TGT-GGCT
1 GATG-CATGTCCCAGACAT-GTCTTACACTAGC-A-CG-AAGCTCTACGCC
* * * ** * *
47969104 GATGCATGTCCCAGAAACGTCTTACACTAGCCCTTATCTCAATC-CC
1 GATGCATGTCCCAGACATGTCTTACACTAGCACGAAGCTCTA-CGCC
47969150 GATGCCATGTCCCAGACATGGTCTTACACT
1 GATG-CATGTCCCAGACAT-GTCTTACACT
47969180 GGCTCTCACA
Statistics
Matches: 130, Mismatches: 27, Indels: 22
0.73 0.15 0.12
Matches are distributed among these distances:
43 1 0.01
44 33 0.25
45 3 0.02
46 23 0.18
47 37 0.28
48 28 0.22
49 3 0.02
50 1 0.01
51 1 0.01
ACGTcount: A:0.24, C:0.30, G:0.19, T:0.27
Consensus pattern (46 bp):
GATGCATGTCCCAGACATGTCTTACACTAGCACGAAGCTCTACGCC
Found at i:47969124 original size:94 final size:94
Alignment explanation
Indices: 47968868--47969183 Score: 286
Period size: 94 Copynumber: 3.4 Consensus size: 94
47968858 TAAGTTGCCA
* * ** *
47968868 ATGCCATGTCCCAGACATGGTCTTACACTGGCTATCTTTATCAAGGCCGATGCCATGTCCCAGAC
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTATCGTAAT-GTGGCTGATG-CATGTCCCAGA-
** * * * * ***
47968933 ATGGTCATACACTAGCTCTCATGTATAAGTGTTG
63 AACGTCTTACACTAGCACTCATCT-CAA-TCCCG
** * * * *
47968967 ATG-CATGTCTAAGACAT-GTCTTACACTAGC-A-CG-AA-GCTTAGCCGATGCATGTCCCAGAC
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTATCGTAATG--TGGCTGATGCATGTCCCAGAA
* *
47969026 ACGTCTTACACTGGCACTCATCTCTA-CGCCG
64 ACGTCTTACACTAGCACTCATCTCAATC-CCG
*
47969057 ATGCCATGTCCCAGACATGGTCTTACATTGGCTATCGTAATGTGGCTGATGCATGTCCCAGAAAC
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTATCGTAATGTGGCTGATGCATGTCCCAGAAAC
* *
47969122 GTCTTACACTAGCCCTTATCTCAATCCCG
66 GTCTTACACTAGCACTCATCTCAATCCCG
47969151 ATGCCATGTCCCAGACATGGTCTTACACTGGCT
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCT
47969184 CTCACATAAC
Statistics
Matches: 175, Mismatches: 32, Indels: 25
0.75 0.14 0.11
Matches are distributed among these distances:
90 4 0.02
91 13 0.07
92 28 0.16
93 12 0.07
94 85 0.49
95 4 0.02
96 2 0.01
97 12 0.07
98 12 0.07
99 3 0.02
ACGTcount: A:0.24, C:0.29, G:0.20, T:0.28
Consensus pattern (94 bp):
ATGCCATGTCCCAGACATGGTCTTACACTGGCTATCGTAATGTGGCTGATGCATGTCCCAGAAAC
GTCTTACACTAGCACTCATCTCAATCCCG
Found at i:47969152 original size:140 final size:141
Alignment explanation
Indices: 47968868--47969187 Score: 353
Period size: 140 Copynumber: 2.3 Consensus size: 141
47968858 TAAGTTGCCA
* *
47968868 ATGCCATGTCCCAGACATGGTCTTACACTGGCTA-TCTTTATCAAGGCCGATGCCATGTCCCAGA
1 ATGCCATGTCCCAGACATGGTCTTACACTGGC-ACTC-ATATCAACGCCGATGCCATGTCCCAGA
* * * * *
47968932 CATGGTCATACACTAGCTCTCATGTATAAGTGTTGATGCATGTCTAAGACATGTCTTACACTAGC
64 CATGGTCATACACTAGCTATCA-GTATAAGTGCTGATGCATGTCCAAGAAACGTCTTACACTAGC
* *
47968997 ACGAAGCTTAGCCG
128 ACGAAGCTAACCCG
* * *
47969011 ATG-CATGTCCCAGACA-CGTCTTACACTGGCACTCATCTCTACGCCGATGCCATGTCCCAGACA
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCACTCATATCAACGCCGATGCCATGTCCCAGACA
* * * * * *
47969074 TGGTCTTACATTGGCTATC-GTA-ATGTGGCTGATGCATGTCCCAGAAACGTCTTACACTAGCCC
66 TGGTCATACACTAGCTATCAGTATAAGT-GCTGATGCATGTCCAAGAAACGTCTTACACTAGCAC
** *
47969137 TTATCTCAATCCCG
130 GAAGCT-AA-CCCG
*
47969151 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCA
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCACTCA
47969188 CATAACCCAA
Statistics
Matches: 148, Mismatches: 23, Indels: 13
0.80 0.12 0.07
Matches are distributed among these distances:
137 3 0.02
138 36 0.24
139 1 0.01
140 47 0.32
141 28 0.19
142 30 0.20
143 3 0.02
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.28
Consensus pattern (141 bp):
ATGCCATGTCCCAGACATGGTCTTACACTGGCACTCATATCAACGCCGATGCCATGTCCCAGACA
TGGTCATACACTAGCTATCAGTATAAGTGCTGATGCATGTCCAAGAAACGTCTTACACTAGCACG
AAGCTAACCCG
Found at i:47974100 original size:47 final size:45
Alignment explanation
Indices: 47973991--47974254 Score: 169
Period size: 47 Copynumber: 5.7 Consensus size: 45
47973981 GTGTATAAGT
* * * * *
47973991 GCTGACGCATGTCCCAAACATGTCTTACACTAGCACGAAGCTTAG
1 GCTGATGCATGTCCCAGACACGTCTTACACTAGCACGCATCTTAG
* *
47974036 TC-GATGCATGTCTCAGACACGTCTTACACTAGCTAC-CATCATTGAG
1 GCTGATGCATGTCCCAGACACGTCTTACACTAGC-ACGCATC-TT-AG
* *
47974082 GCTGATGCATGTCCCAGACACGTCTTACACTGGCACTG-ATCTCTAC
1 GCTGATGCATGTCCCAGACACGTCTTACACTAGCAC-GCATCT-TAG
* * * * * * *
47974128 GCCGGTGCCATGTTCCAGACATGGTCTTACACTGGCTA-TCATAATGT-G
1 GCTGATG-CATGTCCCAGACA-CGTCTTACACTAGC-ACGCAT-CT-TAG
* * * * *
47974176 GCTGATGCATGTCCCAGACACGTCTTACACTAGCCCTCGTCTCAAT
1 GCTGATGCATGTCCCAGACACGTCTTACACTAGCACGCATCT-TAG
* *
47974222 ACTGATGCCATGTCCCAGACATGGTCTTACACT
1 GCTGATG-CATGTCCCAGACA-CGTCTTACACT
47974255 GCCTCTCACA
Statistics
Matches: 171, Mismatches: 32, Indels: 29
0.74 0.14 0.12
Matches are distributed among these distances:
44 29 0.17
45 6 0.04
46 33 0.19
47 70 0.41
48 30 0.18
49 3 0.02
ACGTcount: A:0.24, C:0.30, G:0.20, T:0.27
Consensus pattern (45 bp):
GCTGATGCATGTCCCAGACACGTCTTACACTAGCACGCATCTTAG
Found at i:47974183 original size:94 final size:92
Alignment explanation
Indices: 47973943--47974254 Score: 307
Period size: 94 Copynumber: 3.3 Consensus size: 92
47973933 TTCATCGAGA
* * *
47973943 CCGATGCCATGTCCATACATGGTTTTACACTAGCTATCGTGTATAA-GT-GCTGACGCATGTCCC
1 CCGATGCCATGTCCAGACATGGTCTTACACTAGCTATC----ATAATGTGGCTGATGCATGTCCC
* * *
47974006 AAACATGTCTTACACTAGCAC-GAAGCT-TAG
62 AGACACGTCTTACACTAGCACTG-ATCTCTAG
* * * * *
47974036 TCGATG-CATGTCTCAGACA-CGTCTTACACTAGCTACCATCATTGAGGCTGATGCATGTCCCAG
1 CCGATGCCATGTC-CAGACATGGTCTTACACTAGCTATCAT-AATGTGGCTGATGCATGTCCCAG
*
47974099 ACACGTCTTACACTGGCACTGATCTCTACG
64 ACACGTCTTACACTAGCACTGATCTCTA-G
* *
47974129 CCGGTGCCATGTTCCAGACATGGTCTTACACTGGCTATCATAATGTGGCTGATGCATGTCCCAGA
1 CCGATGCCATG-TCCAGACATGGTCTTACACTAGCTATCATAATGTGGCTGATGCATGTCCCAGA
*
47974194 CACGTCTTACACTAGCCCTCG-TCTCAATA-
65 CACGTCTTACACTAGCACT-GATCTC--TAG
*
47974223 CTGATGCCATGTCCCAGACATGGTCTTACACT
1 CCGATGCCATGT-CCAGACATGGTCTTACACT
47974255 GCCTCTCACA
Statistics
Matches: 182, Mismatches: 23, Indels: 27
0.78 0.10 0.12
Matches are distributed among these distances:
88 2 0.01
89 1 0.01
90 1 0.01
91 35 0.19
92 24 0.13
93 16 0.09
94 81 0.45
95 20 0.11
96 2 0.01
ACGTcount: A:0.24, C:0.29, G:0.20, T:0.28
Consensus pattern (92 bp):
CCGATGCCATGTCCAGACATGGTCTTACACTAGCTATCATAATGTGGCTGATGCATGTCCCAGAC
ACGTCTTACACTAGCACTGATCTCTAG
Found at i:47976891 original size:43 final size:43
Alignment explanation
Indices: 47976835--47976964 Score: 156
Period size: 43 Copynumber: 3.0 Consensus size: 43
47976825 ATATTGTACA
*
47976835 ATGCCAATGTCCCAGATGTGGTCTTAGATGTAATCACATATCG
1 ATGCCAATGTCCCAGAAGTGGTCTTAGATGTAATCACATATCG
* * * * * *
47976878 ATGCCACTATCCCAGACAG-GGTCTTAAACGCAATTACATATCG
1 ATGCCAATGTCCCAGA-AGTGGTCTTAGATGTAATCACATATCG
*
47976921 ATGCCAATGTCCCA-AACATGGTCTTAGATGTAATCACATATCG
1 ATGCCAATGTCCCAGAA-GTGGTCTTAGATGTAATCACATATCG
47976964 A
1 A
47976965 CATCACATAT
Statistics
Matches: 70, Mismatches: 14, Indels: 6
0.78 0.16 0.07
Matches are distributed among these distances:
41 1 0.01
42 1 0.01
43 67 0.96
44 1 0.01
ACGTcount: A:0.32, C:0.24, G:0.18, T:0.27
Consensus pattern (43 bp):
ATGCCAATGTCCCAGAAGTGGTCTTAGATGTAATCACATATCG
Found at i:47978372 original size:48 final size:48
Alignment explanation
Indices: 47978296--47978522 Score: 197
Period size: 48 Copynumber: 4.7 Consensus size: 48
47978286 TGATGTGTGT
* * * *
47978296 GCTAGTGTAAGACTTATCTGGGACATGGCATTGGCACTGAAGATGAGA
1 GCTAGTGTAAGACTTGTCTGGGACATGGCATCGACACCGAAGATGAGA
* *
47978344 GCTACTGTAAGATTTGTCTGGGACATGGCATCGACACCGAAGATGAGA
1 GCTAGTGTAAGACTTGTCTGGGACATGGCATCGACACCGAAGATGAGA
* * * * * *
47978392 GCCAGTGTAAGACCTGTTTGGGACACGGCATCGACACAGATGAGTGAGA
1 GCTAGTGTAAGACTTGTCTGGGACATGGCATCGACACCGAAGA-TGAGA
* * * * * * * * *
47978441 GCCAGTGTAAGACGTATTTGGCATATAGCATCGGC-CTCGATGTATG-GAA
1 GCTAGTGTAAGACTTGTCTGGGACATGGCATCGACAC-CGAAG-ATGAG-A
* *
47978490 GCCAGTGTAAGACCTGTCTGGGACATGGCATCG
1 GCTAGTGTAAGACTTGTCTGGGACATGGCATCG
47978523 GCCTATATGT
Statistics
Matches: 147, Mismatches: 28, Indels: 7
0.81 0.15 0.04
Matches are distributed among these distances:
48 79 0.54
49 67 0.46
50 1 0.01
ACGTcount: A:0.27, C:0.19, G:0.31, T:0.23
Consensus pattern (48 bp):
GCTAGTGTAAGACTTGTCTGGGACATGGCATCGACACCGAAGATGAGA
Found at i:47978453 original size:49 final size:48
Alignment explanation
Indices: 47978299--47978617 Score: 256
Period size: 49 Copynumber: 6.6 Consensus size: 48
47978289 TGTGTGTGCT
* * * * * * *
47978299 AGTGTAAGACTTATCTGGGACATGGCATTGGCACTGAAGATGAGAGCT
1 AGTGTAAGACCTGTCTGGGACATGGCATCGACACAGATGATGAGAGCC
* ** * *
47978347 ACTGTAAGATTTGTCTGGGACATGGCATCGACACCGAAGATGAGAGCC
1 AGTGTAAGACCTGTCTGGGACATGGCATCGACACAGATGATGAGAGCC
* *
47978395 AGTGTAAGACCTGTTTGGGACACGGCATCGACACAGATGAGTGAGAGCC
1 AGTGTAAGACCTGTCTGGGACATGGCATCGACACAGATGA-TGAGAGCC
* * * * * * * *
47978444 AGTGTAAGACGTATTTGGCATATAGCATCGGC-CTCGATGTATG-GAAGCC
1 AGTGTAAGACCTGTCTGGGACATGGCATCGACAC-AGATG-ATGAG-AGCC
* * *
47978493 AGTGTAAGACCTGTCTGGGACATGGCATCGGC-CTATATGTATG-GAAGTC
1 AGTGTAAGACCTGTCTGGGACATGGCATCGACAC-AGATG-ATGAG-AGCC
* **
47978542 AGTGTAAGACCTGTCTGGGACATGGTATC-ACTTAGATG-TGAGAGCC
1 AGTGTAAGACCTGTCTGGGACATGGCATCGACACAGATGATGAGAGCC
47978588 AGTGTAAGACCATGTCT-GGAGCATGGCATC
1 AGTGTAAGACC-TGTCTGGGA-CATGGCATC
47978618 AGCATCATGC
Statistics
Matches: 226, Mismatches: 37, Indels: 17
0.81 0.13 0.06
Matches are distributed among these distances:
46 19 0.08
47 14 0.06
48 81 0.36
49 111 0.49
50 1 0.00
ACGTcount: A:0.27, C:0.18, G:0.30, T:0.24
Consensus pattern (48 bp):
AGTGTAAGACCTGTCTGGGACATGGCATCGACACAGATGATGAGAGCC
Found at i:47979853 original size:21 final size:22
Alignment explanation
Indices: 47979813--47979854 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
47979803 GTCAAGAAGG
*
47979813 CCACACGGGCATGTTGCCCCTT
1 CCACAAGGGCATGTTGCCCCTT
*
47979835 CCACAAGGGCGTG-TGCCCCT
1 CCACAAGGGCATGTTGCCCCT
47979855 GCTTCAAGAG
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 7 0.39
22 11 0.61
ACGTcount: A:0.14, C:0.40, G:0.26, T:0.19
Consensus pattern (22 bp):
CCACAAGGGCATGTTGCCCCTT
Found at i:47982735 original size:24 final size:25
Alignment explanation
Indices: 47982672--47982774 Score: 93
Period size: 25 Copynumber: 4.2 Consensus size: 25
47982662 AGCCATAAAA
*
47982672 GCTTCCCAAATAAATTGCCACAAAG
1 GCTTCCCAAATAAATTACCACAAAG
* * *
47982697 GTTTCCCAAAAAAATTTCCACAAAG
1 GCTTCCCAAATAAATTACCACAAAG
* *
47982722 GCTT-CCAAGTAAATCACCACAAAG
1 GCTTCCCAAATAAATTACCACAAAG
* * * *
47982746 ACTTTCCAAA-CAATTCACAACAAAG
1 GCTTCCCAAATAAATT-ACCACAAAG
47982771 GCTT
1 GCTT
47982775 GGTTTGGTTT
Statistics
Matches: 62, Mismatches: 14, Indels: 4
0.77 0.17 0.05
Matches are distributed among these distances:
24 22 0.35
25 40 0.65
ACGTcount: A:0.42, C:0.27, G:0.10, T:0.21
Consensus pattern (25 bp):
GCTTCCCAAATAAATTACCACAAAG
Found at i:47987872 original size:20 final size:19
Alignment explanation
Indices: 47987847--47987902 Score: 60
Period size: 20 Copynumber: 2.8 Consensus size: 19
47987837 TTGTATGGGT
*
47987847 TTGCACTTTGGTGCCTTTG
1 TTGCACTTTGGTGCCTCTG
47987866 ATTGCACATTT-GTGCCTCTG
1 -TTGCAC-TTTGGTGCCTCTG
*
47987886 TCTGCACTTCGGTGCCT
1 T-TGCACTTTGGTGCCT
47987903 ATGTCATGCA
Statistics
Matches: 31, Mismatches: 2, Indels: 6
0.79 0.05 0.15
Matches are distributed among these distances:
19 3 0.10
20 25 0.81
21 3 0.10
ACGTcount: A:0.09, C:0.27, G:0.23, T:0.41
Consensus pattern (19 bp):
TTGCACTTTGGTGCCTCTG
Found at i:48000816 original size:46 final size:45
Alignment explanation
Indices: 48000763--48001031 Score: 235
Period size: 46 Copynumber: 5.8 Consensus size: 45
48000753 TATTTGGGCA
48000763 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG-GAATG
*** * *
48000809 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAGGCA--
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GGAATG
* * *
48000856 TCTGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG-GAATG
* * *
48000902 TCCGAACTCGTTGAGTTGAGTTCGAGTT---TGA-GAGATGTAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATG-GATGGAA-T--G
* *
48000947 CATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG-GAATG
* * *
48000995 CCCGAGCTCGTTGAGTTGAGTCCAAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
48001032 GTGGGTTACA
Statistics
Matches: 179, Mismatches: 26, Indels: 36
0.74 0.11 0.15
Matches are distributed among these distances:
42 3 0.02
43 8 0.04
44 3 0.02
45 2 0.01
46 92 0.51
47 56 0.31
48 2 0.01
49 3 0.02
50 7 0.04
51 3 0.02
ACGTcount: A:0.22, C:0.19, G:0.29, T:0.30
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGGAATG
Found at i:48000884 original size:47 final size:47
Alignment explanation
Indices: 48000809--48000977 Score: 184
Period size: 47 Copynumber: 3.6 Consensus size: 47
48000799 GATGCGAATG
*
48000809 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAGGCA
1 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAGGCA
* * *** * *
48000856 TCTGAGCTCGTTGAGTTGAGTCTGAGTTC-ACTTATG-GA-T-GCGAA
1 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG-GCA
* * *
48000900 TGTCCGAACTCGTTGAGTTGAGTTCGAGTTTGAGAGATGTAACTAGGCA
1 --TCCGAGCTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAGGCA
48000949 TCCGAGCTCGTTGAGTTGAGTCCGAGTTC
1 TCCGAGCTCGTTGAGTTGAGTCCGAGTTC
48000978 ACTTATGGAT
Statistics
Matches: 94, Mismatches: 21, Indels: 14
0.73 0.16 0.11
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 1 0.01
46 28 0.30
47 56 0.60
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.22, C:0.18, G:0.30, T:0.30
Consensus pattern (47 bp):
TCCGAGCTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAGGCA
Found at i:48000918 original size:93 final size:93
Alignment explanation
Indices: 48000759--48001023 Score: 440
Period size: 93 Copynumber: 2.8 Consensus size: 93
48000749 AGGATATTTG
*
48000759 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAG
1 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAG
48000824 TTGAGTCCGAGTTCGAGAGATGTAACTA
66 TTGAGTCCGAGTTCGAGAGATGTAACTA
* *
48000852 GGCATCTGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAG
1 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAG
* *
48000917 TTGAGTTCGAGTTTGAGAGATGTAACTA
66 TTGAGTCCGAGTTCGAGAGATGTAACTA
* * * *
48000945 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAG
*
48001010 TTGAGTCCAAGTTC
66 TTGAGTCCGAGTTC
48001024 ACTTATGGGT
Statistics
Matches: 158, Mismatches: 14, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 158 1.00
ACGTcount: A:0.22, C:0.19, G:0.30, T:0.29
Consensus pattern (93 bp):
GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAG
TTGAGTCCGAGTTCGAGAGATGTAACTA
Found at i:48006113 original size:47 final size:47
Alignment explanation
Indices: 48006061--48006848 Score: 1225
Period size: 47 Copynumber: 16.6 Consensus size: 47
48006051 GATAATTGTG
* *
48006061 ATGTGAATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
48006108 ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
48006155 GTGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
48006204 ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
48006251 GTGTGAAAGTGTATATATATGTGATAAGGCCTAATAGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* * *
48006300 ATGTGAAAGTGTATATATGTGATAAGGCCGAATGACCAATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
48006347 GTGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
48006396 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
48006445 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* * *
48006492 ATGTGATAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
48006539 GTGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
48006588 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
48006635 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
48006682 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATATGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
48006729 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* * * * * * *
48006776 ATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGG
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
48006823 ATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGAAAGTGTATATATGTGATAAG
48006849 TCCCGAAGGG
Statistics
Matches: 687, Mismatches: 46, Indels: 16
0.92 0.06 0.02
Matches are distributed among these distances:
47 464 0.68
49 223 0.32
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.29
Consensus pattern (47 bp):
ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
Found at i:48006168 original size:96 final size:96
Alignment explanation
Indices: 48006068--48006848 Score: 1292
Period size: 96 Copynumber: 8.2 Consensus size: 96
48006058 GTGATGTGAA
48006068 TGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 TGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
48006133 GGCCGAATGGCCAATGTGATGAGTGTGAAAG
66 GGCCGAATGGCCAATGTGATGAGTGTGAAAG
48006164 TGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 TGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
48006229 GGCCGAATGGCCAATGTGATGAGTGTGAAAG
66 GGCCGAATGGCCAATGTGATGAGTGTGAAAG
*
48006260 TGTATATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 TGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
*
48006325 GGCCGAATGACCAATGTGATGAGTGTGAAAG
66 GGCCGAATGGCCAATGTGATGAGTGTGAAAG
48006356 TGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGAT
1 TGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGAT
* * *
48006421 AAGGCCTAATGGCCGATGTGATGAATGTGAAAG
64 AAGGCCGAATGGCCAATGTGATGAGTGTGAAAG
*
48006454 TG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGATAGTGTATATATGTGATAA
1 TGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
48006517 GGCCGAATGGCCAATGTGATGAGTGTGAAAG
66 GGCCGAATGGCCAATGTGATGAGTGTGAAAG
48006548 TGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 TGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
* * * *
48006613 GGCCTAATAGCCGATGTGATGAATGTGAAAG
66 GGCCGAATGGCCAATGTGATGAGTGTGAAAG
*
48006644 TG--TATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 TGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
* * * * *
48006707 GGCCTAATAGCCGATATGATGAATGTGAAAG
66 GGCCGAATGGCCAATGTGATGAGTGTGAAAG
* *
48006738 TG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGACAG
1 TGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
* *
48006801 GGCCGAGTGGCCAACGTGATG-GATGTGAAAG
66 GGCCGAATGGCCAATGTGATGAG-TGTGAAAG
48006832 TGTATA-A-ATGTGATAAG
1 TGTATATATATGTGATAAG
48006849 TCCCGAAGGG
Statistics
Matches: 650, Mismatches: 28, Indels: 16
0.94 0.04 0.02
Matches are distributed among these distances:
94 229 0.35
95 1 0.00
96 377 0.58
98 43 0.07
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.29
Consensus pattern (96 bp):
TGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
GGCCGAATGGCCAATGTGATGAGTGTGAAAG
Found at i:48019372 original size:47 final size:47
Alignment explanation
Indices: 48019165--48019485 Score: 507
Period size: 47 Copynumber: 6.7 Consensus size: 47
48019155 GAAATGATAG
*
48019165 TAAGGCCTATTGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
48019214 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
*
48019263 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGCGTATATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAA--G--TGTATATATGTGA
* *
48019314 TAAGGCCTAATGGTCGATGTGATGAATGTGAAAGTGTATATACGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
48019361 TAGGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
48019408 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATACGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
48019455 TAGGGCCTAATGGCCGATGTGATGAATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGA
48019486 TAAGGCCTAA
Statistics
Matches: 257, Mismatches: 11, Indels: 10
0.92 0.04 0.04
Matches are distributed among these distances:
47 130 0.51
49 82 0.32
51 44 0.17
53 1 0.00
ACGTcount: A:0.31, C:0.09, G:0.30, T:0.30
Consensus pattern (47 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
Found at i:48019493 original size:31 final size:31
Alignment explanation
Indices: 48019451--48019516 Score: 123
Period size: 31 Copynumber: 2.1 Consensus size: 31
48019441 GTGTATATAC
*
48019451 GTGATAGGGCCTAATGGCCGATGTGATGAAT
1 GTGATAAGGCCTAATGGCCGATGTGATGAAT
48019482 GTGATAAGGCCTAATGGCCGATGTGATGAAT
1 GTGATAAGGCCTAATGGCCGATGTGATGAAT
48019513 GTGA
1 GTGA
48019517 AAGTGTATAT
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 34 1.00
ACGTcount: A:0.27, C:0.12, G:0.35, T:0.26
Consensus pattern (31 bp):
GTGATAAGGCCTAATGGCCGATGTGATGAAT
Found at i:48019530 original size:125 final size:125
Alignment explanation
Indices: 48019357--48019581 Score: 360
Period size: 125 Copynumber: 1.8 Consensus size: 125
48019347 GTGTATATAC
* * *
48019357 GTGATAGGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGC
1 GTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGACAAGGCCGAATGGC
* * *
48019422 CGATGTGATGAATGTGAAAGTGTATATACGTGATAGGGCCTAATGGCCGATGTGATGAAT
66 CAACGTGATGAATGTGAAAGTGTATAAACGTGATAGGGCCTAATGGCCGATGTGATGAAT
* *
48019482 GTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGC
1 GTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGACAAGGCCGAATGGC
* *
48019547 CAACGTGATGGATGTGAAAGTGTATAAATGTGATA
66 CAACGTGATGAATGTGAAAGTGTATAAACGTGATA
48019582 AGTCCCGAAG
Statistics
Matches: 90, Mismatches: 10, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
125 90 1.00
ACGTcount: A:0.30, C:0.10, G:0.32, T:0.27
Consensus pattern (125 bp):
GTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGACAAGGCCGAATGGC
CAACGTGATGAATGTGAAAGTGTATAAACGTGATAGGGCCTAATGGCCGATGTGATGAAT
Found at i:48019531 original size:47 final size:47
Alignment explanation
Indices: 48019479--48019583 Score: 138
Period size: 47 Copynumber: 2.2 Consensus size: 47
48019469 CGATGTGATG
* * *
48019479 AATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
1 AATGTGATAAGGCCGAATGGCCAACGTGATGAATGTGAAAGTGTATA
* * * * *
48019526 TATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATA
1 AATGTGATAAGGCCGAATGGCCAACGTGATGAATGTGAAAGTGTATA
48019573 AATGTGATAAG
1 AATGTGATAAG
48019584 TCCCGAAGGG
Statistics
Matches: 47, Mismatches: 11, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
47 47 1.00
ACGTcount: A:0.32, C:0.10, G:0.32, T:0.26
Consensus pattern (47 bp):
AATGTGATAAGGCCGAATGGCCAACGTGATGAATGTGAAAGTGTATA
Found at i:48019538 original size:78 final size:78
Alignment explanation
Indices: 48019402--48019563 Score: 261
Period size: 78 Copynumber: 2.1 Consensus size: 78
48019392 AAGTGTATAT
* *
48019402 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATACGTGATAGGGCCTAATG
1 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATACGTGACAGGGCCGAATG
* *
48019467 GCCGATGTGATGA
66 GCCAACGTGATGA
* *
48019480 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTG
1 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATACGTGACAGGGCCGAATG
*
48019545 GCCAACGTGATGG
66 GCCAACGTGATGA
48019558 ATGTGA
1 ATGTGA
48019564 AAGTGTATAA
Statistics
Matches: 77, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
78 77 1.00
ACGTcount: A:0.29, C:0.12, G:0.33, T:0.26
Consensus pattern (78 bp):
ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATACGTGACAGGGCCGAATG
GCCAACGTGATGA
Found at i:48019776 original size:37 final size:37
Alignment explanation
Indices: 48019702--48019780 Score: 99
Period size: 37 Copynumber: 2.1 Consensus size: 37
48019692 CCGAGCTCTA
* *
48019702 AAGACCCGATGACTACGTGTGGGGATTTTGTTCGGGT
1 AAGACCCGATAACTACGTGTGGGGATTATGTTCGGGT
*
48019739 AAGACCCGATAACTTCGTGTGGAGG-TTATG-TCTGGGT
1 AAGACCCGATAACTACGTGTGG-GGATTATGTTC-GGGT
48019776 AAGAC
1 AAGAC
48019781 TTCGAAATAA
Statistics
Matches: 37, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
36 2 0.05
37 33 0.89
38 2 0.05
ACGTcount: A:0.23, C:0.16, G:0.33, T:0.28
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGGGATTATGTTCGGGT
Done.