genome.fa.s6.2.7.7.80.10.50.1000.142.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A06
Parameters: 2 7 7 80 10 50 1000
Length:  115140250

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   

This is table  142  of  345  ( 41358 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48023715--48023757	23	1.9	23	90	4	70	23	2	11	62	1.40
48027401--48027599	29	6.8	29	68	10	73	32	17	16	33	1.93
48027544--48027615	29	2.5	29	86	0	90	30	23	15	30	1.95
48028740--48028943	83	2.5	83	86	1	284	23	22	25	28	1.99
48032595--48032686	42	2.2	42	82	2	103	30	26	15	28	1.96
48032621--48032713	42	2.2	42	86	3	125	30	21	15	33	1.94
48039894--48040077	40	4.6	40	81	5	219	23	25	24	26	2.00
48047877--48048060	40	4.6	40	80	8	196	25	26	23	25	2.00
48047841--48048060	80	2.8	80	79	9	220	25	26	22	25	2.00
48050155--48050243	25	3.6	25	76	3	81	38	23	12	25	1.90
48059313--48059481	27	6.1	28	75	12	143	34	9	22	33	1.86
48059372--48059471	28	3.6	28	77	4	94	39	9	21	31	1.84
48061600--48061652	13	4.1	13	80	0	70	37	28	7	26	1.83
48063183--48063326	58	2.5	58	78	8	141	30	16	19	33	1.94
48072191--48072339	42	3.5	41	77	12	115	32	26	19	22	1.97
48079683--48079825	43	3.3	42	78	8	137	32	26	18	22	1.97
48109722--48109797	26	2.9	26	82	0	80	39	11	15	32	1.84
48112550--48112597	13	3.5	13	78	15	51	18	2	6	72	1.15
48131738--48131762	11	2.3	11	100	0	50	0	8	0	92	0.40
48135498--48135576	6	12.8	6	70	15	54	48	11	20	20	1.80
48135510--48135576	25	2.7	25	88	0	98	46	11	20	20	1.82
48135694--48135791	26	3.8	26	80	6	101	39	18	22	19	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48137113--48137284	46	3.7	46	77	13	199	22	21	27	28	1.99
48138717--48138781	22	3.0	22	80	8	78	30	23	26	20	1.98
48139221--48139610	27	14.4	27	83	2	478	24	20	18	37	1.94
48139602--48139859	27	9.6	27	77	9	206	32	9	19	38	1.84
48139666--48139859	53	3.6	54	78	7	200	31	10	18	39	1.84
48139602--48139859	80	3.2	78	79	7	257	32	9	19	38	1.84
48141811--48141844	18	1.9	18	88	5	52	52	14	11	20	1.73
48141834--48141919	6	14.0	6	72	13	68	48	12	17	20	1.80
48141835--48141919	25	3.4	25	82	4	102	49	11	17	21	1.78
48142037--48142124	26	3.4	26	82	4	79	40	19	22	17	1.91
48142062--48142124	26	2.4	26	86	5	83	41	22	22	14	1.89
48142062--48142134	26	2.8	26	83	8	69	39	21	23	15	1.91
48142275--48142339	22	3.0	22	77	8	69	32	23	24	20	1.98
48142767--48143252	27	18.0	27	84	2	582	25	19	17	37	1.93
48143243--48143500	27	9.7	27	74	8	170	32	8	20	39	1.82
48143281--48143500	54	4.1	54	77	4	198	30	8	20	40	1.82
48143243--48143500	81	3.2	79	79	3	266	32	8	20	39	1.82
48143308--48143450	53	2.7	53	85	5	173	33	7	17	41	1.78
48143291--48143500	80	2.6	81	80	4	239	31	8	20	40	1.82
48143538--48143601	27	2.4	27	89	0	92	25	34	21	18	1.96
48145327--48145398	33	2.3	33	83	7	96	23	23	36	16	1.94
48146504--48146541	15	2.7	14	84	8	51	36	0	5	57	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48146651--48146738	44	2.0	46	82	8	110	37	22	5	34	1.78
48150449--48150527	32	2.5	31	80	10	79	69	18	6	5	1.29
48151358--48151388	16	1.9	16	93	0	53	9	9	9	70	1.33
48153277--48153302	12	2.2	12	100	0	52	30	0	23	46	1.53
48157164--48157294	48	2.7	48	86	0	172	31	19	22	26	1.98
48161918--48161981	32	2.0	32	93	0	110	23	10	28	37	1.89
48166144--48166174	16	1.9	16	93	0	53	9	6	9	74	1.23
48167586--48167612	5	5.4	5	100	0	54	40	0	0	59	0.98
48167577--48167677	39	2.6	41	73	12	104	39	1	1	56	1.22
48175897--48175929	6	5.5	6	92	0	57	18	0	48	33	1.48
48179222--48179405	40	4.6	40	82	6	196	23	20	27	28	1.99
48179222--48179402	80	2.3	81	83	9	221	23	20	27	27	1.99
48179303--48179452	40	3.8	38	80	10	131	25	22	28	24	1.99
48191657--48191920	79	3.3	78	84	6	327	25	27	21	25	2.00
48191657--48191920	40	6.7	40	88	6	333	25	27	21	25	2.00
48193551--48193735	40	4.7	39	82	4	210	24	22	27	25	2.00
48193548--48193758	79	2.7	79	78	9	241	26	21	26	25	2.00
48201331--48201511	40	4.6	39	84	4	220	25	24	27	23	2.00
48201328--48201538	79	2.7	80	80	5	259	26	22	26	24	2.00
48206268--48206509	39	6.2	39	89	0	367	23	22	29	23	1.99
48206268--48206509	117	2.1	117	93	0	421	23	22	29	23	1.99
48212260--48212535	39	7.2	39	90	2	418	23	23	29	23	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48212260--48212535	113	2.4	117	93	4	490	23	23	29	23	1.99
48214716--48214746	16	1.9	16	93	0	53	74	9	6	9	1.23
48225072--48225176	27	3.9	27	78	0	120	20	17	26	35	1.95
48225080--48225207	54	2.4	54	85	2	159	23	17	25	33	1.96
48225291--48225380	27	3.3	27	74	0	63	23	15	28	32	1.95
48225121--48225463	171	2.0	171	94	0	596	22	17	24	35	1.95
48227133--48227168	2	18.0	2	100	0	72	50	0	50	0	1.00
48227506--48227546	15	2.6	16	78	17	50	26	19	14	39	1.90
48227502--48227592	16	5.8	16	75	7	69	21	24	14	39	1.91
48231471--48231574	37	2.8	36	73	13	95	50	1	2	45	1.28
48233579--48233614	16	2.2	16	95	0	63	69	0	22	8	1.15
48234118--48234147	11	2.8	11	95	5	53	40	0	10	50	1.36
48248660--48248759	50	2.0	50	100	0	200	42	6	14	38	1.70
48255770--48255809	18	2.2	18	95	0	71	70	0	15	15	1.18
48258878--48259058	40	4.6	40	88	8	266	26	27	23	22	1.99
48258878--48259057	76	2.3	78	88	7	260	26	27	22	22	1.99
48268455--48268613	67	2.4	66	81	4	189	30	16	30	23	1.96
48273661--48273701	20	2.0	20	85	0	55	56	4	7	31	1.48
48277012--48277082	28	2.5	28	88	0	115	18	39	21	21	1.93
48279318--48279396	37	2.1	37	88	4	115	25	30	18	25	1.98
48279514--48279907	47	8.4	47	93	0	637	28	30	8	31	1.87
48295198--48295224	12	2.2	12	100	0	54	51	7	0	40	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48295599--48295629	14	2.2	14	100	0	62	29	0	35	35	1.58
48295683--48295807	27	4.5	28	90	4	182	26	12	28	32	1.93
48295683--48295807	55	2.2	56	88	5	182	26	12	28	32	1.93
48295711--48295820	27	4.0	26	89	5	123	29	11	25	33	1.91
48295711--48295820	55	2.0	55	87	8	163	29	11	25	33	1.91
48303637--48303663	12	2.2	12	100	0	54	51	7	0	40	1.30
48304110--48304207	27	3.5	28	90	2	135	26	13	28	31	1.94
48304138--48304220	27	3.0	27	87	5	96	30	12	25	32	1.92
48320798--48320941	55	2.6	54	80	1	153	38	18	22	20	1.94
48320801--48321004	53	3.8	54	78	1	221	37	17	23	22	1.94
48324428--48324479	27	2.0	26	84	3	68	34	21	26	17	1.95
48325121--48325235	27	4.3	27	80	4	97	26	20	17	34	1.95
48325135--48325239	54	1.9	54	92	0	174	27	20	17	34	1.95
48325139--48325239	27	3.7	27	85	0	139	25	20	17	35	1.95
48327046--48327240	27	7.2	27	88	0	282	36	18	18	25	1.94
48331595--48331737	58	2.5	58	80	5	146	33	20	17	27	1.96
48337490--48337665	46	3.8	46	79	12	216	20	21	29	28	1.98
48337487--48337658	93	1.8	93	96	0	317	20	21	29	27	1.98
48345042--48345217	46	3.8	46	79	12	216	20	21	29	28	1.98
48345039--48345210	93	1.8	93	96	0	317	20	21	29	27	1.98
48351046--48351099	27	2.0	27	96	0	99	55	5	11	27	1.57
48354740--48354828	34	2.6	34	75	10	83	28	23	22	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48356948--48357384	27	16.2	27	84	4	515	27	21	9	40	1.84
48356948--48357394	108	4.1	108	88	3	571	28	21	9	40	1.84
48357389--48357584	27	7.3	27	82	0	221	35	18	19	26	1.95
48357784--48357864	27	3.0	28	85	7	96	19	22	19	38	1.94
48358176--48358249	27	2.8	27	85	6	89	17	24	21	36	1.95
48358367--48358595	6	37.8	6	75	14	204	20	17	13	48	1.81
48358367--48358602	61	3.8	61	82	10	273	20	16	13	48	1.81
48365578--48365602	6	4.2	6	100	0	50	16	16	16	52	1.76
48365739--48365813	34	2.2	33	83	6	96	22	22	26	28	1.99
48366972--48367034	31	2.0	31	93	0	108	23	17	25	33	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345