Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A06
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 115140250
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2234201 characters in sequence are not A, C, G, or T
File 144 of 345
Found at i:48743007 original size:12 final size:12
Alignment explanation
Indices: 48742983--48743023 Score: 64
Period size: 12 Copynumber: 3.4 Consensus size: 12
48742973 TACACCGTGT
48742983 CAGTAACAATAA
1 CAGTAACAATAA
* *
48742995 CATTAACAGTAA
1 CAGTAACAATAA
48743007 CAGTAACAATAA
1 CAGTAACAATAA
48743019 CAGTA
1 CAGTA
48743024 GCAGTACGGT
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
12 25 1.00
ACGTcount: A:0.54, C:0.17, G:0.10, T:0.20
Consensus pattern (12 bp):
CAGTAACAATAA
Found at i:48743028 original size:18 final size:18
Alignment explanation
Indices: 48742983--48743029 Score: 67
Period size: 18 Copynumber: 2.6 Consensus size: 18
48742973 TACACCGTGT
* *
48742983 CAGTAACAATAACATTAA
1 CAGTAACAGTAACAATAA
48743001 CAGTAACAGTAACAATAA
1 CAGTAACAGTAACAATAA
*
48743019 CAGTAGCAGTA
1 CAGTAACAGTA
48743030 CGGTACACAG
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 26 1.00
ACGTcount: A:0.51, C:0.17, G:0.13, T:0.19
Consensus pattern (18 bp):
CAGTAACAGTAACAATAA
Found at i:48746110 original size:27 final size:27
Alignment explanation
Indices: 48746072--48746126 Score: 110
Period size: 27 Copynumber: 2.0 Consensus size: 27
48746062 TGTAGAGAAG
48746072 TCTGTTTAACTTTTATCTCAACTAAAA
1 TCTGTTTAACTTTTATCTCAACTAAAA
48746099 TCTGTTTAACTTTTATCTCAACTAAAA
1 TCTGTTTAACTTTTATCTCAACTAAAA
48746126 T
1 T
48746127 TGAGCCATCT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.33, C:0.18, G:0.04, T:0.45
Consensus pattern (27 bp):
TCTGTTTAACTTTTATCTCAACTAAAA
Found at i:48749590 original size:17 final size:18
Alignment explanation
Indices: 48749567--48749615 Score: 55
Period size: 17 Copynumber: 2.8 Consensus size: 18
48749557 ATCTTTATTG
48749567 TTCAGTAACAGTCAGTCA
1 TTCAGTAACAGTCAGTCA
* * * *
48749585 -TCAGTAATAATTAGTTA
1 TTCAGTAACAGTCAGTCA
48749602 TTCAGTAACAGTCA
1 TTCAGTAACAGTCA
48749616 TTGATTTAGT
Statistics
Matches: 23, Mismatches: 7, Indels: 2
0.72 0.22 0.06
Matches are distributed among these distances:
17 13 0.57
18 10 0.43
ACGTcount: A:0.37, C:0.16, G:0.14, T:0.33
Consensus pattern (18 bp):
TTCAGTAACAGTCAGTCA
Found at i:48749791 original size:6 final size:6
Alignment explanation
Indices: 48749780--48749817 Score: 51
Period size: 6 Copynumber: 6.5 Consensus size: 6
48749770 GTCAATAAGG
* *
48749780 GTAACA GTAACA GTAACA ATAACA GTAGCA GT-ACA GTA
1 GTAACA GTAACA GTAACA GTAACA GTAACA GTAACA GTA
48749818 CACAAAGTAC
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
5 4 0.15
6 23 0.85
ACGTcount: A:0.47, C:0.16, G:0.18, T:0.18
Consensus pattern (6 bp):
GTAACA
Found at i:48751086 original size:13 final size:12
Alignment explanation
Indices: 48751054--48751087 Score: 52
Period size: 12 Copynumber: 2.8 Consensus size: 12
48751044 TATGTATATA
48751054 TATATAATAACT
1 TATATAATAACT
48751066 TA-ATAATATACT
1 TATATAATA-ACT
48751078 TATATAATAA
1 TATATAATAA
48751088 GTAAACATAC
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
11 6 0.30
12 8 0.40
13 6 0.30
ACGTcount: A:0.53, C:0.06, G:0.00, T:0.41
Consensus pattern (12 bp):
TATATAATAACT
Found at i:48752709 original size:14 final size:14
Alignment explanation
Indices: 48752690--48752720 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
48752680 TTGTGTGTTC
*
48752690 TTTATTTTATTTAT
1 TTTATTATATTTAT
48752704 TTTATTATATTTAT
1 TTTATTATATTTAT
48752718 TTT
1 TTT
48752721 TTCACAAATT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (14 bp):
TTTATTATATTTAT
Found at i:48757167 original size:10 final size:9
Alignment explanation
Indices: 48757141--48757171 Score: 53
Period size: 9 Copynumber: 3.3 Consensus size: 9
48757131 TTGTGTGTTC
48757141 TTTATTTTA
1 TTTATTTTA
48757150 TTTATTTTA
1 TTTATTTTA
48757159 TTATATTTTA
1 TT-TATTTTA
48757169 TTT
1 TTT
48757172 TTTCACAAAG
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
9 12 0.57
10 9 0.43
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (9 bp):
TTTATTTTA
Found at i:48763138 original size:43 final size:41
Alignment explanation
Indices: 48762984--48763139 Score: 120
Period size: 43 Copynumber: 3.7 Consensus size: 41
48762974 GTGTTCTCGC
* *
48762984 GTAAGACCACGTCTGGGATGTTGGCATCGATATGTGATT-TT
1 GTAAGACCACGTCTGGGACGTTGGCATCGA-ATGTGATTCAT
* * * * *
48763025 GAGTAAGACCATGTCTGGGACATCGGCTTCGTAATTGTGATTCGT
1 --GTAAGACCACGTCTGGGACGTTGGCATCG-AA-TGTGATTCAT
* * *
48763070 GTAAGACC-CTATATAGGACAG-TGGCATCGACATGTGATTACAT
1 GTAAGACCAC-GTCTGGGAC-GTTGGCATCGA-ATGTGATT-CAT
48763113 GTAAGACCACGTCTGGGACGTTGGCAT
1 GTAAGACCACGTCTGGGACGTTGGCAT
48763140 TGTACAATAT
Statistics
Matches: 87, Mismatches: 17, Indels: 18
0.71 0.14 0.15
Matches are distributed among these distances:
42 9 0.10
43 68 0.78
44 9 0.10
45 1 0.01
ACGTcount: A:0.25, C:0.18, G:0.28, T:0.29
Consensus pattern (41 bp):
GTAAGACCACGTCTGGGACGTTGGCATCGAATGTGATTCAT
Found at i:48769570 original size:40 final size:40
Alignment explanation
Indices: 48769474--48769697 Score: 296
Period size: 40 Copynumber: 5.7 Consensus size: 40
48769464 GCTCCTCGTT
*
48769474 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
48769514 C-AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
*
48769553 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* *
48769593 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * * *
48769632 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
48769673 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
48769698 CATCATTCAA
Statistics
Matches: 165, Mismatches: 13, Indels: 12
0.87 0.07 0.06
Matches are distributed among these distances:
38 2 0.01
39 67 0.41
40 85 0.52
41 11 0.07
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:48769577 original size:79 final size:79
Alignment explanation
Indices: 48769474--48769697 Score: 292
Period size: 79 Copynumber: 2.8 Consensus size: 79
48769464 GCTCCTCGTT
* *
48769474 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAATGCCTTCGGGACTTAACCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAATGCCTTCGGGACTTAGCCCGGA
*
48769539 TTTAGTAACTCGCA
66 ATTAGTAACTCGCA
*
48769553 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCACAAATGCCTTCGGG-CTTAGCCCG
1 CAAATGCCTTCGGGACTTAGCCCGG-TTATAGTAACTCGCAC-AATGCCTTCGGGACTTAGCCCG
*
48769616 GAATTAGTATCTCGCA
64 GAATTAGTAACTCGCA
* * * * * *
48769632 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCACAAAGCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGGGA-CTTAGCCCGGTTATAGTAAC-TCGCACAATGCCTTCGGGACTTAGCCCG
48769696 GA
64 GA
48769698 CATCATTCAA
Statistics
Matches: 127, Mismatches: 12, Indels: 11
0.85 0.08 0.07
Matches are distributed among these distances:
78 4 0.03
79 93 0.73
80 30 0.24
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (79 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAATGCCTTCGGGACTTAGCCCGGA
ATTAGTAACTCGCA
Found at i:48777529 original size:40 final size:40
Alignment explanation
Indices: 48777431--48777693 Score: 316
Period size: 40 Copynumber: 6.6 Consensus size: 40
48777421 TCCTCGTTCA
* * * * *
48777431 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
48777470 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
*
48777510 ACTGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
48777550 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
48777590 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * * * * *
48777630 AAGGCCTTC-GGATCTTAATCCGGATATATTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACG
* *
48777670 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
48777694 CAGCATTCAA
Statistics
Matches: 198, Mismatches: 22, Indels: 7
0.87 0.10 0.03
Matches are distributed among these distances:
39 37 0.19
40 153 0.77
41 8 0.04
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:48787532 original size:11 final size:11
Alignment explanation
Indices: 48787499--48787532 Score: 52
Period size: 11 Copynumber: 3.1 Consensus size: 11
48787489 ATAGAAGGCT
48787499 TAAAAAATAAA
1 TAAAAAATAAA
48787510 TAAAAGAA-AAA
1 TAAAA-AATAAA
48787521 TAAAAAATAAA
1 TAAAAAATAAA
48787532 T
1 T
48787533 GGACTTAGAG
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
10 2 0.10
11 17 0.81
12 2 0.10
ACGTcount: A:0.79, C:0.00, G:0.03, T:0.18
Consensus pattern (11 bp):
TAAAAAATAAA
Found at i:48798082 original size:51 final size:51
Alignment explanation
Indices: 48798027--48798132 Score: 142
Period size: 51 Copynumber: 2.1 Consensus size: 51
48798017 ATACCACATA
* * *
48798027 ACATGTAA-CACATCCATAATAAACTCGTACCTCTCAACGAGCTCAGATGTT
1 ACATG-AATCACATCCACAATAAACTCGGACCTCTCAACGAGCTCAGATGCT
* * *
48798078 ACATGAATCACATCCACCATGAACTCGGACCTCTCAACGAGCTCGGATGCT
1 ACATGAATCACATCCACAATAAACTCGGACCTCTCAACGAGCTCAGATGCT
48798129 ACAT
1 ACAT
48798133 ATCTCACAAA
Statistics
Matches: 48, Mismatches: 6, Indels: 2
0.86 0.11 0.04
Matches are distributed among these distances:
50 2 0.04
51 46 0.96
ACGTcount: A:0.33, C:0.30, G:0.14, T:0.23
Consensus pattern (51 bp):
ACATGAATCACATCCACAATAAACTCGGACCTCTCAACGAGCTCAGATGCT
Found at i:48805002 original size:13 final size:13
Alignment explanation
Indices: 48804974--48805017 Score: 52
Period size: 13 Copynumber: 3.3 Consensus size: 13
48804964 TTGTCATGAG
*
48804974 AAATTAATTTAGTT
1 AAATTAA-TTAATT
* *
48804988 AATTTGATTAATT
1 AAATTAATTAATT
48805001 AAATTAATTAATT
1 AAATTAATTAATT
48805014 AAAT
1 AAAT
48805018 AAAACTTATT
Statistics
Matches: 25, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
13 20 0.80
14 5 0.20
ACGTcount: A:0.48, C:0.00, G:0.05, T:0.48
Consensus pattern (13 bp):
AAATTAATTAATT
Found at i:48805368 original size:20 final size:19
Alignment explanation
Indices: 48805338--48805375 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 19
48805328 AATTAGTGAG
48805338 AATTAATTTTCTAAGAATA
1 AATTAATTTTCTAAGAATA
*
48805357 AATTATATTTTCTAGGAAT
1 AATTA-ATTTTCTAAGAAT
48805376 TACAATTTCT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 5 0.29
20 12 0.71
ACGTcount: A:0.42, C:0.05, G:0.08, T:0.45
Consensus pattern (19 bp):
AATTAATTTTCTAAGAATA
Found at i:48809997 original size:48 final size:48
Alignment explanation
Indices: 48809924--48810823 Score: 1408
Period size: 48 Copynumber: 18.2 Consensus size: 48
48809914 TAAGCTATTG
* * *
48809924 GTGAAATTGATGTATAAAATATGTATATGTGGTAAAGCCGAATGGCTAGT
1 GTGAAA-T-ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAAT
*
48809974 GTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGT
1 GTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAAT
48810022 GTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAAT
1 GTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAAT
48810070 GTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAAT
1 GTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAAT
48810118 GTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAAT
1 GTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAAT
*
48810166 GTGAAATGTATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAAT
1 GTGAAA--TATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAAT
*
48810216 GTGAAATGTATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAAT
1 GTGAAA--TATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAAT
*
48810266 GTGAAATGTATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAAT
1 GTGAAA--TATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAAT
48810316 GTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAAT
1 GTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAAT
48810364 GTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAAT
1 GTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAAT
*
48810412 GTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGTTAAT
1 GTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAAT
* *
48810460 GTGAAATATATATATATGAGATATGTATATGTGGTAAAGCCGAATGGTTAAT
1 GTG--A-A-ATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAAT
*
48810512 GTGAAATATATATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAAT
1 GTG----A-A-ATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAAT
*
48810566 GTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGTTAAT
1 GTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAAT
*
48810614 GTGAAATATATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAAT
1 GTG--A-A-ATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAAT
*
48810666 GTGAAATATGTATGAGATATGCATATGTGGTAAAGCCGAATGG-TCAAT
1 GTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCT-AAT
*
48810714 GTGAAATATATATATGAGATATGTATATGTGGTAAAGCCGAATGGC-AAGT
1 GTG-AA-ATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAA-T
*
48810764 GTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGT
1 GTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAAT
48810812 GTGAAATATGTA
1 GTGAAATATGTA
48810824 GGCGATGTGT
Statistics
Matches: 813, Mismatches: 19, Indels: 38
0.93 0.02 0.04
Matches are distributed among these distances:
47 1 0.00
48 464 0.57
49 10 0.01
50 197 0.24
51 2 0.00
52 89 0.11
54 50 0.06
ACGTcount: A:0.36, C:0.06, G:0.26, T:0.32
Consensus pattern (48 bp):
GTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAAT
Found at i:48810050 original size:96 final size:96
Alignment explanation
Indices: 48809924--48810823 Score: 1408
Period size: 100 Copynumber: 9.1 Consensus size: 96
48809914 TAAGCTATTG
* * *
48809924 GTGAAATTGATGTATAAAATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGA
1 GTGAAA-T-ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGA
*
48809989 GATATGTATATGTGGTAAAGCCGAATGGCTAGT
64 GATATGTATATGTGGTAAAGCCGAATGGCTAAT
48810022 GTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGA
1 GTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGA
48810087 TATGTATATGTGGTAAAGCCGAATGGCTAAT
66 TATGTATATGTGGTAAAGCCGAATGGCTAAT
*
48810118 GTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATGTATATATGA
1 GTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAA--TATGTATGA
48810183 GATATGTATATGTGGTAAAGCCGAATGGCTAAT
64 GATATGTATATGTGGTAAAGCCGAATGGCTAAT
* *
48810216 GTGAAATGTATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATGTATATAT
1 GTGAAA--TATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAA--TATGTAT
48810281 GAGATATGTATATGTGGTAAAGCCGAATGGCTAAT
62 GAGATATGTATATGTGGTAAAGCCGAATGGCTAAT
48810316 GTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGA
1 GTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGA
48810381 TATGTATATGTGGTAAAGCCGAATGGCTAAT
66 TATGTATATGTGGTAAAGCCGAATGGCTAAT
* *
48810412 GTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGTTAATGTGAAATATATATATAT
1 GTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG--A-A-ATATGTAT
*
48810477 GAGATATGTATATGTGGTAAAGCCGAATGGTTAAT
62 GAGATATGTATATGTGGTAAAGCCGAATGGCTAAT
*
48810512 GTGAAATATATATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGT
1 GTG----A-A-ATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGT
*
48810577 ATGAGATATGTATATGTGGTAAAGCCGAATGGTTAAT
60 ATGAGATATGTATATGTGGTAAAGCCGAATGGCTAAT
*
48810614 GTGAAATATATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTAT
1 GTG--A-A-ATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTAT
*
48810679 GAGATATGCATATGTGGTAAAGCCGAATGG-TCAAT
62 GAGATATGTATATGTGGTAAAGCCGAATGGCT-AAT
*
48810714 GTGAAATATATATATGAGATATGTATATGTGGTAAAGCCGAATGGC-AAGTGTGAAATATGTATG
1 GTG-AA-ATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAA-TGTGAAATATGTATG
*
48810778 AGATATGTATATGTGGTAAAGCCGAATGGCTAGT
63 AGATATGTATATGTGGTAAAGCCGAATGGCTAAT
48810812 GTGAAATATGTA
1 GTGAAATATGTA
48810824 GGCGATGTGT
Statistics
Matches: 766, Mismatches: 19, Indels: 36
0.93 0.02 0.04
Matches are distributed among these distances:
96 236 0.31
97 5 0.01
98 190 0.25
99 5 0.01
100 237 0.31
102 45 0.06
103 1 0.00
104 2 0.00
105 1 0.00
106 44 0.06
ACGTcount: A:0.36, C:0.06, G:0.26, T:0.32
Consensus pattern (96 bp):
GTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGA
TATGTATATGTGGTAAAGCCGAATGGCTAAT
Found at i:48811078 original size:37 final size:37
Alignment explanation
Indices: 48810972--48811078 Score: 169
Period size: 37 Copynumber: 2.9 Consensus size: 37
48810962 AAATATATTT
* *
48810972 CGGGTAAGACCTGATGACTACGTGTGGAGATTATGTC
1 CGGGTAAGACCCGATGACTACGTGTGGAGATTTTGTC
48811009 CGGGTAAGACCCGATGACTACGTGTGGAGATTTTGTC
1 CGGGTAAGACCCGATGACTACGTGTGGAGATTTTGTC
* * *
48811046 TGGGTAAGACCCGATAACTTCGTGTGGAGATTT
1 CGGGTAAGACCCGATGACTACGTGTGGAGATTT
48811079 CATCTGAGCT
Statistics
Matches: 65, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
37 65 1.00
ACGTcount: A:0.23, C:0.17, G:0.32, T:0.28
Consensus pattern (37 bp):
CGGGTAAGACCCGATGACTACGTGTGGAGATTTTGTC
Found at i:48824755 original size:46 final size:46
Alignment explanation
Indices: 48824583--48824755 Score: 219
Period size: 46 Copynumber: 3.7 Consensus size: 46
48824573 TAACCCGCCC
* * *
48824583 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
*
48824629 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGAAGCCTAGTT-ACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG-A--C-A-TTCGCATCCA
* *
48824677 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
48824722 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
48824756 TGCTCAACCA
Statistics
Matches: 109, Mismatches: 9, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 62 0.57
47 28 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.21
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
Found at i:48828895 original size:26 final size:26
Alignment explanation
Indices: 48828846--48828918 Score: 83
Period size: 26 Copynumber: 2.8 Consensus size: 26
48828836 TTAAGCCTGA
* * * * *
48828846 TACTGGCAGCTTTGTTGCGTTATTGT
1 TACTGGAAGCTTTGCTGTGATATTAT
*
48828872 TATTGGAAGCTTTGCTGTGATATTAT
1 TACTGGAAGCTTTGCTGTGATATTAT
*
48828898 TACTGGCAGCTTTGCTGTGAT
1 TACTGGAAGCTTTGCTGTGAT
48828919 TTTAGTGTGT
Statistics
Matches: 39, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 39 1.00
ACGTcount: A:0.16, C:0.14, G:0.26, T:0.44
Consensus pattern (26 bp):
TACTGGAAGCTTTGCTGTGATATTAT
Found at i:48831961 original size:47 final size:47
Alignment explanation
Indices: 48831907--48832121 Score: 322
Period size: 47 Copynumber: 4.6 Consensus size: 47
48831897 TATTTGAATA
* *
48831907 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* * *
48831954 AATGTGAAAGTTTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
*
48832001 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATATGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* * *
48832048 AATGTGAAAGTGTATATATGTGATAGGGCCGAGTGGCCAACGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* * *
48832095 GATGTGAAAGTGTGTAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
48832122 TCCCGAAGGG
Statistics
Matches: 155, Mismatches: 13, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
47 155 1.00
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
Found at i:48833856 original size:40 final size:40
Alignment explanation
Indices: 48833533--48833844 Score: 480
Period size: 40 Copynumber: 7.8 Consensus size: 40
48833523 GAGAATTGAG
* *
48833533 AGTGATGTATCTGGGCTAAGTCCTGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
48833573 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
48833613 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCTTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* *
48833653 AGTGATGTATCCGGGATAAGTCTCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
48833693 AGTGATGTATCCGGGCTAAGTCTCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* *
48833733 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * **
48833773 AGTGATATATCCGTGCTAAACCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * * *
48833813 GGTGTTATATCCGGGCTAGGTCCCGAAGAGCA
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCA
48833845 ATCATGCTGG
Statistics
Matches: 250, Mismatches: 22, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 250 1.00
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.27
Consensus pattern (40 bp):
AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
Found at i:48835473 original size:38 final size:40
Alignment explanation
Indices: 48835421--48835599 Score: 150
Period size: 40 Copynumber: 4.5 Consensus size: 40
48835411 AAATCACGTA
* **
48835421 CCTTCGGAATTTAA-CC-GATATAGCT-ACTCGTTCAAATG
1 CCTTCGGAACTTAACCCGGATATAG-TAACTCGCACAAATG
* *
48835459 CCTTCGGGACTTAACCCGGATTTAGTAACTCGCACAAATG
1 CCTTCGGAACTTAACCCGGATATAGTAACTCGCACAAATG
* ** *
48835499 CCTTCGGATCTTAGTCCGGATTTAGTAATCTCGCACAAATG
1 CCTTCGGAACTTAACCCGGATATAGTAA-CTCGCACAAATG
* ** * * *
48835540 CCTTCGGATCTTAGTCCGGATATGGTCACTTAGCACAAA-G
1 CCTTCGGAACTTAACCCGGATATAGTAAC-TCGCACAAATG
* *
48835580 CCTTCGGGACTTAGCCCGGA
1 CCTTCGGAACTTAACCCGGA
48835600 CATCATTCAA
Statistics
Matches: 120, Mismatches: 16, Indels: 8
0.83 0.11 0.06
Matches are distributed among these distances:
38 12 0.10
39 3 0.03
40 60 0.50
41 45 0.38
ACGTcount: A:0.25, C:0.26, G:0.21, T:0.28
Consensus pattern (40 bp):
CCTTCGGAACTTAACCCGGATATAGTAACTCGCACAAATG
Found at i:48835544 original size:41 final size:40
Alignment explanation
Indices: 48835453--48835599 Score: 174
Period size: 41 Copynumber: 3.6 Consensus size: 40
48835443 GCTACTCGTT
**
48835453 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTC-GGATCTTAGTCCGGATTTAGTAACTCGCA
48835493 CAAATGCCTTCGGATCTTAGTCCGGATTTAGTAATCTCGCA
1 CAAATGCCTTCGGATCTTAGTCCGGATTTAGTAA-CTCGCA
* * * *
48835534 CAAATGCCTTCGGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGATCTTAGTCCGGATTTAGTAAC-TCGCA
*
48835575 CAAA-GCCTTCGGGA-CTTAGCCCGGA
1 CAAATGCCTTC-GGATCTTAGTCCGGA
48835600 CATCATTCAA
Statistics
Matches: 96, Mismatches: 7, Indels: 8
0.86 0.06 0.07
Matches are distributed among these distances:
39 3 0.03
40 45 0.47
41 48 0.50
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.27
Consensus pattern (40 bp):
CAAATGCCTTCGGATCTTAGTCCGGATTTAGTAACTCGCA
Found at i:48843364 original size:40 final size:40
Alignment explanation
Indices: 48843327--48843550 Score: 278
Period size: 40 Copynumber: 5.7 Consensus size: 40
48843317 GCTACTCGTT
* *
48843327 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
48843367 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
48843407 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
** *
48843447 CAAATGCCTTC-GGATCTT-AGTCGGATTTAGTAACTCGTA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAACTCGCA
** * * * *
48843486 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAACTCGCA
*
48843526 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
48843551 CATCATTCAA
Statistics
Matches: 166, Mismatches: 14, Indels: 9
0.88 0.07 0.05
Matches are distributed among these distances:
39 55 0.33
40 109 0.66
41 2 0.01
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:48846502 original size:47 final size:47
Alignment explanation
Indices: 48846448--48846709 Score: 416
Period size: 47 Copynumber: 5.6 Consensus size: 47
48846438 TATTTGAATA
48846448 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
48846495 AATGTGAAAGTTTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
48846542 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * * *
48846589 AATGTGAAAGTGTATATATATGATAAGGCCGAATGGCCAATATGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * * * *
48846636 AATGTGAAAGTGTATATATGTGATAGGGCCGAGTGGCCAACGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
48846683 GATGTGAAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
48846710 TCCCGAAGGG
Statistics
Matches: 201, Mismatches: 14, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
47 201 1.00
ACGTcount: A:0.34, C:0.08, G:0.29, T:0.29
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:48848438 original size:20 final size:20
Alignment explanation
Indices: 48848395--48848441 Score: 55
Period size: 18 Copynumber: 2.5 Consensus size: 20
48848385 CTTTTATTAA
*
48848395 AAAATATTTTTTTTATATTT
1 AAAATATATTTTTTATATTT
48848415 --AATATATTTTTTA-ATTT
1 AAAATATATTTTTTATATTT
48848432 CAAAATATAT
1 -AAAATATAT
48848442 AGTGACAAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 6
0.77 0.03 0.20
Matches are distributed among these distances:
17 4 0.17
18 12 0.52
20 7 0.30
ACGTcount: A:0.40, C:0.02, G:0.00, T:0.57
Consensus pattern (20 bp):
AAAATATATTTTTTATATTT
Found at i:48852199 original size:46 final size:46
Alignment explanation
Indices: 48852146--48852236 Score: 128
Period size: 46 Copynumber: 2.0 Consensus size: 46
48852136 TATATATACA
* * *
48852146 CATCTCATACATATCTCACATTAGCCATTTGGCTTTACCACATATC
1 CATCTCATACACATCTCACATTAACCATTCGGCTTTACCACATATC
* * *
48852192 CATCTCATACACATTTCGCATTAACCATTCGGCTTTCCCACATAT
1 CATCTCATACACATCTCACATTAACCATTCGGCTTTACCACATAT
48852237 ATACACTTCC
Statistics
Matches: 39, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
46 39 1.00
ACGTcount: A:0.27, C:0.32, G:0.07, T:0.34
Consensus pattern (46 bp):
CATCTCATACACATCTCACATTAACCATTCGGCTTTACCACATATC
Found at i:48852285 original size:47 final size:47
Alignment explanation
Indices: 48852250--48852541 Score: 413
Period size: 47 Copynumber: 6.2 Consensus size: 47
48852240 CACTTCCACG
* *
48852250 TTCATCACATTGGCCATTCTGCCTTATTACATATATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
* * *
48852297 TTTATCACATTGGCCATTCGGCCTTATCACATATGTGCATGTTCATA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
*
48852344 TTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
* *
48852391 TTCATCACATTGGCCATTCGGCCTTATCACATATGTACATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
* *
48852438 TTCATCACATTGGCCATTCGGCCTTATCACACAAATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
* * * * * * **
48852485 TTCATCACATTTGTCATTCAGCCTTAGCTCATATATACACATTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
*
48852532 TCCATCACAT
1 TTCATCACAT
48852542 AAAATCCTAA
Statistics
Matches: 218, Mismatches: 27, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
47 218 1.00
ACGTcount: A:0.26, C:0.28, G:0.11, T:0.35
Consensus pattern (47 bp):
TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
Found at i:48852328 original size:94 final size:94
Alignment explanation
Indices: 48852216--48852541 Score: 438
Period size: 94 Copynumber: 3.5 Consensus size: 94
48852206 TTCGCATTAA
* ** * * * *
48852216 CCATTCGGCTTTCCCACATATATACACT-TCCACGTTCATCACATTGGCCATTCTGCCTTATTAC
1 CCATTCGGCCTTATCACATATATACA-TGTTCACATTCATCACATTGGCCATTCGGCCTTATCAC
* *
48852280 ATATATGCATGTTCACATTTATCACATTGG
65 ACATATGCATGTTCACATTCATCACATTGG
* * *
48852310 CCATTCGGCCTTATCACATATGTGCATGTTCATATTCATCACATTGGCCATTCGGCCTTATCACA
1 CCATTCGGCCTTATCACATATATACATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACA
48852375 CATATGCATGTTCACATTCATCACATTGG
66 CATATGCATGTTCACATTCATCACATTGG
*
48852404 CCATTCGGCCTTATCACATATGTACATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACA
1 CCATTCGGCCTTATCACATATATACATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACA
* *
48852469 CAAATGCATGTTCACATTCATCACATTTG
66 CATATGCATGTTCACATTCATCACATTGG
* * * * ** *
48852498 TCATTCAGCCTTAGCTCATATATACACATTCACATCCATCACAT
1 CCATTCGGCCTTATCACATATATACATGTTCACATTCATCACAT
48852542 AAAATCCTAA
Statistics
Matches: 207, Mismatches: 24, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
93 1 0.00
94 206 1.00
ACGTcount: A:0.26, C:0.29, G:0.11, T:0.34
Consensus pattern (94 bp):
CCATTCGGCCTTATCACATATATACATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACA
CATATGCATGTTCACATTCATCACATTGG
Found at i:48855422 original size:29 final size:29
Alignment explanation
Indices: 48855389--48855490 Score: 118
Period size: 29 Copynumber: 3.6 Consensus size: 29
48855379 GATTAAAGAA
48855389 CTCGCACACATAGTGCCTCAATTACCAAT
1 CTCGCACACATAGTGCCTCAATTACCAAT
* **
48855418 CTCGCACACATAGTG-CTCGATTGAAGAA-
1 CTCGCACACATAGTGCCTCAATT-ACCAAT
* **
48855446 CTCGCACACATAGTGCCTCAACTACTGAT
1 CTCGCACACATAGTGCCTCAATTACCAAT
*
48855475 CTGGCACACATAGTGC
1 CTCGCACACATAGTGC
48855491 TCTGTTGAAG
Statistics
Matches: 61, Mismatches: 9, Indels: 6
0.80 0.12 0.08
Matches are distributed among these distances:
28 23 0.38
29 38 0.62
ACGTcount: A:0.29, C:0.31, G:0.17, T:0.23
Consensus pattern (29 bp):
CTCGCACACATAGTGCCTCAATTACCAAT
Found at i:48855436 original size:57 final size:57
Alignment explanation
Indices: 48855365--48855522 Score: 228
Period size: 57 Copynumber: 2.8 Consensus size: 57
48855355 ACTGATTTCA
* * *
48855365 CACACATAGCGCTCGATTAAAGAACTCGCACACATAGTGCCTCAATTACCAATCTCG
1 CACACATAGTGCTCGATTGAAGAACTCGCACACATAGTGCCTCAACTACCAATCTCG
** *
48855422 CACACATAGTGCTCGATTGAAGAACTCGCACACATAGTGCCTCAACTACTGATCTGG
1 CACACATAGTGCTCGATTGAAGAACTCGCACACATAGTGCCTCAACTACCAATCTCG
* *
48855479 CACACATAGTGCTCTG-TTGAAGAACTTGCACACACAGTGCCTCA
1 CACACATAGTGCTC-GATTGAAGAACTCGCACACATAGTGCCTCA
48855523 TGATTCCAGC
Statistics
Matches: 92, Mismatches: 8, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
57 91 0.99
58 1 0.01
ACGTcount: A:0.31, C:0.30, G:0.17, T:0.22
Consensus pattern (57 bp):
CACACATAGTGCTCGATTGAAGAACTCGCACACATAGTGCCTCAACTACCAATCTCG
Found at i:48855458 original size:28 final size:27
Alignment explanation
Indices: 48855365--48855518 Score: 130
Period size: 28 Copynumber: 5.4 Consensus size: 27
48855355 ACTGATTTCA
*
48855365 CACACATAGCGCTCGATTAAAGAACTCG
1 CACACATAGTGCTCGATT-AAGAACTCG
* **
48855393 CACACATAGTGCCTCAATTACCAATCTCG
1 CACACATAGTG-CTCGATTAAGAA-CTCG
48855422 CACACATAGTGCTCGATTGAAGAACTCG
1 CACACATAGTGCTCGATT-AAGAACTCG
* * * * *
48855450 CACACATAGTGCCTCAACTACTGATCTGG
1 CACACATAGTG-CTCGATTA-AGAACTCG
*
48855479 CACACATAGTGCTCTG-TTGAAGAACTTG
1 CACACATAGTGCTC-GATT-AAGAACTCG
*
48855507 CACACACAGTGC
1 CACACATAGTGC
48855519 CTCATGATTC
Statistics
Matches: 101, Mismatches: 18, Indels: 14
0.76 0.14 0.11
Matches are distributed among these distances:
28 55 0.54
29 46 0.46
ACGTcount: A:0.31, C:0.29, G:0.18, T:0.22
Consensus pattern (27 bp):
CACACATAGTGCTCGATTAAGAACTCG
Found at i:48855600 original size:40 final size:40
Alignment explanation
Indices: 48855530--48855963 Score: 701
Period size: 40 Copynumber: 10.9 Consensus size: 40
48855520 TCATGATTCC
*
48855530 AGCACGAATGC-CTTCGAGG-TTTAGCCCGGATATATCACT
1 AGCACGAATGCTCTTCG-GGACTTAGCCCGGATATATCACT
* *
48855569 AGCACGAATGCTTTTCGGGACTTAGCCCGGATACATCACT
1 AGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCACT
*
48855609 AGCACGAATGCTCTTCGGGACTTAGCTCGGATATATCACT
1 AGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCACT
* *
48855649 AGCACGAATGCTCTTCGGGACTTAGCTCGGATATATCACC
1 AGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCACT
* *
48855689 AGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCACG
1 AGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCACT
*
48855729 AGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCACC
1 AGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCACT
*
48855769 AGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCACC
1 AGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCACT
*
48855809 AGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCACT
1 AGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCACT
*
48855849 AGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCGCT
1 AGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCACT
* * *
48855889 AGCACGAATGCTCTTCGAGACTTAGCTCGGATACATCACT
1 AGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCACT
*
48855929 AGCATGAATGCTCTTCGGGACTTAGCCCGGATATA
1 AGCACGAATGCTCTTCGGGACTTAGCCCGGATATA
48855964 ACATACTGAA
Statistics
Matches: 369, Mismatches: 24, Indels: 3
0.93 0.06 0.01
Matches are distributed among these distances:
39 13 0.04
40 356 0.96
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
AGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCACT
Found at i:48855674 original size:23 final size:23
Alignment explanation
Indices: 48855608--48855674 Score: 56
Period size: 23 Copynumber: 3.2 Consensus size: 23
48855598 GATACATCAC
48855608 TAGCACGAATGCTCTTCGGGACT
1 TAGCACGAATGCTCTTCGGGACT
* * * *
48855631 TAGCTCGGAT-AT-ATC---AC-
1 TAGCACGAATGCTCTTCGGGACT
48855648 TAGCACGAATGCTCTTCGGGACT
1 TAGCACGAATGCTCTTCGGGACT
48855671 TAGC
1 TAGC
48855675 TCGGATATAT
Statistics
Matches: 30, Mismatches: 8, Indels: 12
0.60 0.16 0.24
Matches are distributed among these distances:
17 8 0.27
18 3 0.10
19 2 0.07
21 2 0.07
22 3 0.10
23 12 0.40
ACGTcount: A:0.24, C:0.25, G:0.24, T:0.27
Consensus pattern (23 bp):
TAGCACGAATGCTCTTCGGGACT
Found at i:48857455 original size:46 final size:46
Alignment explanation
Indices: 48857402--48857492 Score: 128
Period size: 46 Copynumber: 2.0 Consensus size: 46
48857392 TATATATACA
* * *
48857402 CATCTCATACATATCTCACATTAGCCATTTGGCTTTACCACATATC
1 CATCTCATACACATCTCACATTAACCATTCGGCTTTACCACATATC
* * *
48857448 CATCTCATACACATTTCGCATTAACCATTCGGCTTTCCCACATAT
1 CATCTCATACACATCTCACATTAACCATTCGGCTTTACCACATAT
48857493 ATACACTTCC
Statistics
Matches: 39, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
46 39 1.00
ACGTcount: A:0.27, C:0.32, G:0.07, T:0.34
Consensus pattern (46 bp):
CATCTCATACACATCTCACATTAACCATTCGGCTTTACCACATATC
Found at i:48857541 original size:47 final size:47
Alignment explanation
Indices: 48857506--48857797 Score: 413
Period size: 47 Copynumber: 6.2 Consensus size: 47
48857496 CACTTCCACG
* *
48857506 TTCATCACATTGGCCATTCTGCCTTATTACATATATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
* * *
48857553 TTTATCACATTGGCCATTCGGCCTTATCACATATGTGCATGTTCATA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
*
48857600 TTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
* *
48857647 TTCATCACATTGGCCATTCGGCCTTATCACATATGTACATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
* *
48857694 TTCATCACATTGGCCATTCGGCCTTATCACACAAATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
* * * * * * **
48857741 TTCATCACATTTGTCATTCAGCCTTAGCTCATATATACACATTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
*
48857788 TCCATCACAT
1 TTCATCACAT
48857798 AAAATCCTAA
Statistics
Matches: 218, Mismatches: 27, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
47 218 1.00
ACGTcount: A:0.26, C:0.28, G:0.11, T:0.35
Consensus pattern (47 bp):
TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
Found at i:48857584 original size:94 final size:94
Alignment explanation
Indices: 48857472--48857797 Score: 438
Period size: 94 Copynumber: 3.5 Consensus size: 94
48857462 TTCGCATTAA
* ** * * * *
48857472 CCATTCGGCTTTCCCACATATATACACT-TCCACGTTCATCACATTGGCCATTCTGCCTTATTAC
1 CCATTCGGCCTTATCACATATATACA-TGTTCACATTCATCACATTGGCCATTCGGCCTTATCAC
* *
48857536 ATATATGCATGTTCACATTTATCACATTGG
65 ACATATGCATGTTCACATTCATCACATTGG
* * *
48857566 CCATTCGGCCTTATCACATATGTGCATGTTCATATTCATCACATTGGCCATTCGGCCTTATCACA
1 CCATTCGGCCTTATCACATATATACATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACA
48857631 CATATGCATGTTCACATTCATCACATTGG
66 CATATGCATGTTCACATTCATCACATTGG
*
48857660 CCATTCGGCCTTATCACATATGTACATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACA
1 CCATTCGGCCTTATCACATATATACATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACA
* *
48857725 CAAATGCATGTTCACATTCATCACATTTG
66 CATATGCATGTTCACATTCATCACATTGG
* * * * ** *
48857754 TCATTCAGCCTTAGCTCATATATACACATTCACATCCATCACAT
1 CCATTCGGCCTTATCACATATATACATGTTCACATTCATCACAT
48857798 AAAATCCTAA
Statistics
Matches: 207, Mismatches: 24, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
93 1 0.00
94 206 1.00
ACGTcount: A:0.26, C:0.29, G:0.11, T:0.34
Consensus pattern (94 bp):
CCATTCGGCCTTATCACATATATACATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACA
CATATGCATGTTCACATTCATCACATTGG
Found at i:48861013 original size:5 final size:5
Alignment explanation
Indices: 48860973--48861006 Score: 68
Period size: 5 Copynumber: 6.8 Consensus size: 5
48860963 CCAATTTGAG
48860973 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAAA
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAAA
48861007 AATAAAAAGA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 29 1.00
ACGTcount: A:0.82, C:0.00, G:0.00, T:0.18
Consensus pattern (5 bp):
AAAAT
Found at i:48864848 original size:41 final size:42
Alignment explanation
Indices: 48864734--48864892 Score: 128
Period size: 41 Copynumber: 3.7 Consensus size: 42
48864724 TCACATATCG
* * *
48864734 TACAATGCCAACGTCCCAGACATGGTCTTACATGCTATATCATA
1 TACAATGCCAATGTCCCAGACATGGTCTTACA--CGATATCAAA
* *
48864778 T-CGATGCCATTGTCCCAGACA-GGTTCTTACACGA-ATCAAA
1 TACAATGCCAATGTCCCAGACATGG-TCTTACACGATATCAAA
* * *
48864818 TACAATGCCAATGTACCAGACATGGCCTTACACG-TAACAACATA
1 TACAATGCCAATGTCCCAGACATGGTCTTACACGATATC-A-A-A
* * *
48864862 TATCAATGCCAACGTCCCAGACGTAGTCTTA
1 TA-CAATGCCAATGTCCCAGACATGGTCTTA
48864893 TGTGACAGCC
Statistics
Matches: 92, Mismatches: 15, Indels: 15
0.75 0.12 0.12
Matches are distributed among these distances:
40 6 0.07
41 29 0.32
42 5 0.05
43 25 0.27
44 4 0.04
45 23 0.25
ACGTcount: A:0.33, C:0.28, G:0.15, T:0.25
Consensus pattern (42 bp):
TACAATGCCAATGTCCCAGACATGGTCTTACACGATATCAAA
Found at i:48866609 original size:78 final size:81
Alignment explanation
Indices: 48866488--48866671 Score: 209
Period size: 78 Copynumber: 2.3 Consensus size: 81
48866478 TTGAATGATG
* * *
48866488 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGAT-CCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGCGCTAAGTGACCAAATCCGGACTAAG-TCCCGAAGGCAA
48866551 TTGTGCG-GATACTA-A
65 TTGTGCGAGATACTATA
* * * **
48866566 TTCCGGGCTAAG-CCCGAAGGCATTTGCGC-GAGTTACTAAATCCGGGTTAAGTCCCGAAGGCAA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGCGCTAAGTGACCAAATCCGGACTAAGTCCCGAAGGCAA
*
48866629 TTGTGCGAGTTACTATA
65 TTGTGCGAGATACTATA
* *
48866646 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
48866672 AATGAGTAGC
Statistics
Matches: 89, Mismatches: 11, Indels: 9
0.82 0.10 0.08
Matches are distributed among these distances:
77 1 0.01
78 41 0.46
79 32 0.36
80 15 0.17
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.24
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGCGCTAAGTGACCAAATCCGGACTAAGTCCCGAAGGCAAT
TGTGCGAGATACTATA
Found at i:48866637 original size:40 final size:40
Alignment explanation
Indices: 48866488--48866671 Score: 207
Period size: 40 Copynumber: 4.7 Consensus size: 40
48866478 TTGAATGATG
* * * *
48866488 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
48866528 TCCGGACTAAGAT-CCGAAGGCATTTGTGCG-GATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
48866567 TCCGGGCTAAG-CCCGAAGGCATTTGCGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
48866606 TCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
48866647 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
48866672 AATGAGTAGC
Statistics
Matches: 121, Mismatches: 17, Indels: 12
0.81 0.11 0.08
Matches are distributed among these distances:
38 16 0.13
39 31 0.26
40 64 0.53
41 10 0.08
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.24
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:48866702 original size:79 final size:78
Alignment explanation
Indices: 48866540--48866704 Score: 183
Period size: 79 Copynumber: 2.1 Consensus size: 78
48866530 CGGACTAAGA
* * **
48866540 TCCGAAGGCATTTGTGCGGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGCGCGAGTTACTAA
1 TCCGAAGGCAATTGTGCGGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
*
48866605 ATCCGGGTTAAGT
66 ATCCGGGTTAAAT
* * * *
48866618 CCCGAAGGCAATTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAATGAG-TAG
1 TCCGAAGGCAATTGTGCG-GATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-
*
48866681 CTATATCC-GGTTAAAT
62 CTAAATCCGGGTTAAAT
48866697 TCCGAAGG
1 TCCGAAGG
48866705 TACGTGATTT
Statistics
Matches: 72, Mismatches: 11, Indels: 7
0.80 0.12 0.08
Matches are distributed among these distances:
78 18 0.25
79 30 0.42
80 24 0.33
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.25
Consensus pattern (78 bp):
TCCGAAGGCAATTGTGCGGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
ATCCGGGTTAAAT
Found at i:48875671 original size:143 final size:143
Alignment explanation
Indices: 48875486--48875772 Score: 556
Period size: 143 Copynumber: 2.0 Consensus size: 143
48875476 ACTTAACCAA
48875486 ACTAATTTATGCTATCATAATCACATTTAATTTCAAGATCAAGATTTCAAATATAACATATACTT
1 ACTAATTTATGCTATCATAATCACATTTAATTTCAAGATCAAGATTTCAAATATAACATATACTT
*
48875551 CCGTATACAAACTATACCTTGGCCGAATATGCATGTTTCTATTATCAAAGTAACATTCAATTTCA
66 CCGTATACAAACGATACCTTGGCCGAATATGCATGTTTCTATTATCAAAGTAACATTCAATTTCA
48875616 AAACCATAGTACC
131 AAACCATAGTACC
*
48875629 ACTAATTTATGCTATCATAATCACATTTAATTTCAAGATCAAGATTTCATATATAACATATACTT
1 ACTAATTTATGCTATCATAATCACATTTAATTTCAAGATCAAGATTTCAAATATAACATATACTT
48875694 CCGTATACAAACGATACCTTGGCCGAATATGCATGTTTCTATTATCAAAGTAACATTCAATTTCA
66 CCGTATACAAACGATACCTTGGCCGAATATGCATGTTTCTATTATCAAAGTAACATTCAATTTCA
48875759 AAACCATAGTACC
131 AAACCATAGTACC
48875772 A
1 A
48875773 TTTATAACCG
Statistics
Matches: 142, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
143 142 1.00
ACGTcount: A:0.38, C:0.20, G:0.08, T:0.34
Consensus pattern (143 bp):
ACTAATTTATGCTATCATAATCACATTTAATTTCAAGATCAAGATTTCAAATATAACATATACTT
CCGTATACAAACGATACCTTGGCCGAATATGCATGTTTCTATTATCAAAGTAACATTCAATTTCA
AAACCATAGTACC
Found at i:48876123 original size:43 final size:41
Alignment explanation
Indices: 48876068--48876225 Score: 145
Period size: 41 Copynumber: 3.7 Consensus size: 41
48876058 ATATCGTACA
* * **
48876068 ATGCCAATGTCCCAGACATGGTCTTACATGCTATCTCATATCG
1 ATGCCAATGTCCCAGACATGGTCTTACACG-AATCAAATA-CG
* *
48876111 ATGCCACTGTCCCAGACAGGGTCTTACACGAATCAAATACG
1 ATGCCAATGTCCCAGACATGGTCTTACACGAATCAAATACG
* * *
48876152 ATACTAATGTCCCAGACATGGTCTTACACGTAACCACATATATCG
1 ATGCCAATGTCCCAGACATGGTCTTACACG-AATCA-A-ATA-CG
* * * *
48876197 ATGCCGACGTCCCAGACGTAGTCTTACAC
1 ATGCCAATGTCCCAGACATGGTCTTACAC
48876226 AAGAACACAT
Statistics
Matches: 94, Mismatches: 17, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
41 28 0.30
42 10 0.11
43 28 0.30
44 3 0.03
45 25 0.27
ACGTcount: A:0.29, C:0.29, G:0.17, T:0.25
Consensus pattern (41 bp):
ATGCCAATGTCCCAGACATGGTCTTACACGAATCAAATACG
Found at i:48876562 original size:15 final size:15
Alignment explanation
Indices: 48876538--48876567 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
48876528 GTTCTTGATC
48876538 TAAACATATTCAAAT
1 TAAACATATTCAAAT
*
48876553 TAAACTTATTCAAAT
1 TAAACATATTCAAAT
48876568 ATATTTTCAC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.50, C:0.13, G:0.00, T:0.37
Consensus pattern (15 bp):
TAAACATATTCAAAT
Found at i:48886929 original size:38 final size:38
Alignment explanation
Indices: 48886878--48886951 Score: 148
Period size: 38 Copynumber: 1.9 Consensus size: 38
48886868 GTGAAAGACT
48886878 ACCGAAGTATCGTCATTGGTATTCCAAGGAGAATGGTA
1 ACCGAAGTATCGTCATTGGTATTCCAAGGAGAATGGTA
48886916 ACCGAAGTATCGTCATTGGTATTCCAAGGAGAATGG
1 ACCGAAGTATCGTCATTGGTATTCCAAGGAGAATGG
48886952 AAAAGGAGTA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 36 1.00
ACGTcount: A:0.31, C:0.16, G:0.27, T:0.26
Consensus pattern (38 bp):
ACCGAAGTATCGTCATTGGTATTCCAAGGAGAATGGTA
Found at i:48887074 original size:47 final size:47
Alignment explanation
Indices: 48887016--48887182 Score: 182
Period size: 47 Copynumber: 3.6 Consensus size: 47
48887006 TTTGGGCATA
*
48887016 CGAACTCGTTGAGTTGAGTCTGAGTTCGTGAGATGTAACTAGGAATC
1 CGAACTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAGGAATC
* ** * *
48887063 CGAACTTGTTGAGTTGAGTTTGAGTTCACT--TATGT-A-T-GCGAATGTC
1 CGAACTCGTTGAGTTGAGTCCGAGTTC-GTGAGATGTAACTAG-GAA--TC
* * *
48887109 CGAGCTCGTTGAGTTGAGTCCGAGTTCGCGAGATGTAACTAGGCATC
1 CGAACTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAGGAATC
48887156 CGAACTCGTTGAGTTGAGTCCGAGTTC
1 CGAACTCGTTGAGTTGAGTCCGAGTTC
48887183 ACTTGTGGAT
Statistics
Matches: 98, Mismatches: 13, Indels: 18
0.76 0.10 0.14
Matches are distributed among these distances:
43 1 0.01
44 4 0.04
45 1 0.01
46 29 0.30
47 57 0.58
48 2 0.02
49 3 0.03
50 1 0.01
ACGTcount: A:0.22, C:0.17, G:0.29, T:0.31
Consensus pattern (47 bp):
CGAACTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAGGAATC
Found at i:48887120 original size:46 final size:46
Alignment explanation
Indices: 48887061--48887235 Score: 176
Period size: 46 Copynumber: 3.8 Consensus size: 46
48887051 TAACTAGGAA
* **
48887061 TCCGAACTTGTTGAGTTGAGTTTGAGTTCACTTATGTATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGTATGCGAATG
* * ** *
48887107 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCGAGATGTAACTAG-GCA--
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCAC-TTATGT-A-T-GCGAATG
* *
48887154 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTGTGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGTATGCGAATG
* * *
48887200 CCCGAGCTCATTGAGTTGAGTCCGAGTTCACTTATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATG
48887236 GGCGGGTTAC
Statistics
Matches: 103, Mismatches: 19, Indels: 14
0.76 0.14 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 1 0.01
46 60 0.58
47 33 0.32
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.21, C:0.19, G:0.29, T:0.31
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGTATGCGAATG
Found at i:48887125 original size:93 final size:93
Alignment explanation
Indices: 48887020--48887228 Score: 328
Period size: 93 Copynumber: 2.2 Consensus size: 93
48887010 GGCATACGAA
* * * **
48887020 CTCGTTGAGTTGAGTCTGAGTTCGTGAGATGTAACTAGGAATCCGAACTTGTTGAGTTGAGTTTG
1 CTCGTTGAGTTGAGTCCGAGTTCGCGAGATGTAACTAGGAATCCGAACTCGTTGAGTTGAGTCCG
* *
48887085 AGTTCACTTATGTATGCGAATGTCCGAG
66 AGTTCACTTATGGATGCGAATGCCCGAG
*
48887113 CTCGTTGAGTTGAGTCCGAGTTCGCGAGATGTAACTAGGCATCCGAACTCGTTGAGTTGAGTCCG
1 CTCGTTGAGTTGAGTCCGAGTTCGCGAGATGTAACTAGGAATCCGAACTCGTTGAGTTGAGTCCG
*
48887178 AGTTCACTTGTGGATGCGAATGCCCGAG
66 AGTTCACTTATGGATGCGAATGCCCGAG
*
48887206 CTCATTGAGTTGAGTCCGAGTTC
1 CTCGTTGAGTTGAGTCCGAGTTC
48887229 ACTTATGGGC
Statistics
Matches: 106, Mismatches: 10, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 106 1.00
ACGTcount: A:0.21, C:0.18, G:0.30, T:0.31
Consensus pattern (93 bp):
CTCGTTGAGTTGAGTCCGAGTTCGCGAGATGTAACTAGGAATCCGAACTCGTTGAGTTGAGTCCG
AGTTCACTTATGGATGCGAATGCCCGAG
Found at i:48896434 original size:66 final size:66
Alignment explanation
Indices: 48896328--48896460 Score: 230
Period size: 66 Copynumber: 2.0 Consensus size: 66
48896318 ACAAAAATGG
* *
48896328 ACATGGCAGGTGAAATCTCAAAGTTATGCATTAAGGGTATTTTAGTAATTTGGCTAATAAGGACA
1 ACATGGCAGGTGAAATCTCAAACTTATGCATTAAGGGTATTTTAGTAATTTGGATAATAAGGACA
48896393 A
66 A
* *
48896394 ACATGGTAGGTGAAATCTCAAACTTATGCATTAAGGGTATTTTAGTAATTTGGATATTAAGGACA
1 ACATGGCAGGTGAAATCTCAAACTTATGCATTAAGGGTATTTTAGTAATTTGGATAATAAGGACA
48896459 A
66 A
48896460 A
1 A
48896461 ATTAACTAAA
Statistics
Matches: 63, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
66 63 1.00
ACGTcount: A:0.37, C:0.10, G:0.22, T:0.32
Consensus pattern (66 bp):
ACATGGCAGGTGAAATCTCAAACTTATGCATTAAGGGTATTTTAGTAATTTGGATAATAAGGACA
A
Found at i:48899938 original size:40 final size:41
Alignment explanation
Indices: 48899740--48899924 Score: 204
Period size: 40 Copynumber: 4.6 Consensus size: 41
48899730 TTGAATGATG
* * *
48899740 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCAT-A
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* * * *
48899780 TCAGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-AT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATAA
48899820 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTA-AA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
* * *
48899859 TCCGAGTTAAGTCCCGAAGGCAATTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
48899900 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
48899925 AACGAGTAGC
Statistics
Matches: 121, Mismatches: 18, Indels: 12
0.80 0.12 0.08
Matches are distributed among these distances:
39 34 0.28
40 77 0.64
41 10 0.08
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (41 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:48899946 original size:79 final size:79
Alignment explanation
Indices: 48899793--48899957 Score: 201
Period size: 79 Copynumber: 2.1 Consensus size: 79
48899783 GGACTAAGAT
* * **
48899793 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
*
48899858 ATCCGAGTTAAGTC
66 ATCCGAGTTAAATC
* *
48899872 CCGAAGGCAATTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCAATTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C
* *
48899935 TATATCC-AGTTAAATT
63 TAAATCCGAGTTAAATC
48899951 CCGAAGG
1 CCGAAGG
48899958 TACGTGATTT
Statistics
Matches: 74, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
78 2 0.03
79 47 0.64
80 25 0.34
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.25
Consensus pattern (79 bp):
CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
ATCCGAGTTAAATC
Found at i:48901836 original size:37 final size:37
Alignment explanation
Indices: 48901783--48901882 Score: 173
Period size: 37 Copynumber: 2.7 Consensus size: 37
48901773 CGAATAGTCC
*
48901783 CCACACGTAGTTATCGGGTCTTACCCGGACAAAACCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAACCT
* *
48901820 CCACACGTAGTCATCGGGTCTTACCCGGACATAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAACCT
48901857 CCACACGTAGTCATCGGGTCTTACCC
1 CCACACGTAGTCATCGGGTCTTACCC
48901883 AGAATATATT
Statistics
Matches: 60, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 60 1.00
ACGTcount: A:0.24, C:0.34, G:0.19, T:0.23
Consensus pattern (37 bp):
CCACACGTAGTCATCGGGTCTTACCCGGACAAAACCT
Found at i:48902084 original size:48 final size:48
Alignment explanation
Indices: 48902026--48902267 Score: 430
Period size: 48 Copynumber: 5.0 Consensus size: 48
48902016 ATATACACAC
*
48902026 ATCTCCTACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
48902074 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* *
48902122 ATCTCATATATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
48902170 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* *
48902218 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACACATATAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
48902266 AT
1 AT
48902268 ATTTATCTTA
Statistics
Matches: 187, Mismatches: 7, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
48 187 1.00
ACGTcount: A:0.31, C:0.28, G:0.06, T:0.35
Consensus pattern (48 bp):
ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
Found at i:48909445 original size:29 final size:29
Alignment explanation
Indices: 48909387--48909485 Score: 128
Period size: 29 Copynumber: 3.4 Consensus size: 29
48909377 CTATATTTGA
* * *
48909387 CCCATTAAGCCC-AATCATATTTATATGG
1 CCCATTAGGCCCAAATCACATGTATATGG
* *
48909415 CCCATTAGGCCCAAATCACCTGTATAAGG
1 CCCATTAGGCCCAAATCACATGTATATGG
*
48909444 CCCATTAGGCCCAAATCACATTTATATGG
1 CCCATTAGGCCCAAATCACATGTATATGG
*
48909473 CCCGTTAGGCCCA
1 CCCATTAGGCCCA
48909486 GTCACATTCA
Statistics
Matches: 61, Mismatches: 9, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
28 11 0.18
29 50 0.82
ACGTcount: A:0.29, C:0.30, G:0.15, T:0.25
Consensus pattern (29 bp):
CCCATTAGGCCCAAATCACATGTATATGG
Found at i:48909715 original size:16 final size:16
Alignment explanation
Indices: 48909691--48909725 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
48909681 GTAGCCAAAC
* *
48909691 TTTCGGCTTTTTGGCA
1 TTTCAGCTTTTCGGCA
48909707 TTTCAGCTTTTCGGCA
1 TTTCAGCTTTTCGGCA
48909723 TTT
1 TTT
48909726 TGGCATTTCG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.09, C:0.20, G:0.20, T:0.51
Consensus pattern (16 bp):
TTTCAGCTTTTCGGCA
Found at i:48909721 original size:24 final size:24
Alignment explanation
Indices: 48909691--48909741 Score: 84
Period size: 24 Copynumber: 2.1 Consensus size: 24
48909681 GTAGCCAAAC
*
48909691 TTTCGGCTTTTTGGCATTTCAGCT
1 TTTCGGCATTTTGGCATTTCAGCT
*
48909715 TTTCGGCATTTTGGCATTTCGGCT
1 TTTCGGCATTTTGGCATTTCAGCT
48909739 TTT
1 TTT
48909742 GTCGATTCAT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.08, C:0.20, G:0.22, T:0.51
Consensus pattern (24 bp):
TTTCGGCATTTTGGCATTTCAGCT
Found at i:48913961 original size:28 final size:29
Alignment explanation
Indices: 48913921--48914033 Score: 124
Period size: 29 Copynumber: 4.0 Consensus size: 29
48913911 CATGTATCTA
* *
48913921 GCCCATTAAGCCC-AATCATATTCATATG
1 GCCCATTAGGCCCAAATCACATTCATATG
* *
48913949 GCCCATTTGGCCCAAATCACCTAT-ATATG
1 GCCCATTAGGCCCAAATCACAT-TCATATG
* *
48913978 GCACATTAGGCCCAAATCACATTTATATG
1 GCCCATTAGGCCCAAATCACATTCATATG
* *
48914007 GCCCGTTAGGCCC-AGTCACATTCATAT
1 GCCCATTAGGCCCAAATCACATTCATAT
48914034 TCATGCTCAC
Statistics
Matches: 71, Mismatches: 11, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
28 24 0.34
29 46 0.65
30 1 0.01
ACGTcount: A:0.29, C:0.29, G:0.14, T:0.27
Consensus pattern (29 bp):
GCCCATTAGGCCCAAATCACATTCATATG
Found at i:48915562 original size:16 final size:16
Alignment explanation
Indices: 48915537--48915568 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
48915527 AAGTTCGGGA
*
48915537 TTTCAGGATTTTTGGG
1 TTTCAAGATTTTTGGG
48915553 TTTCAAGATTTTTGGG
1 TTTCAAGATTTTTGGG
48915569 GCGTTACAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.16, C:0.06, G:0.28, T:0.50
Consensus pattern (16 bp):
TTTCAAGATTTTTGGG
Found at i:48929133 original size:27 final size:26
Alignment explanation
Indices: 48929096--48929209 Score: 115
Period size: 27 Copynumber: 4.3 Consensus size: 26
48929086 CACATGGCTG
*
48929096 CCAGAACAGATATTGTGACAGAGTCA
1 CCAGAACAGATATTGTGACAGAGCCA
*
48929122 CCAGATACAGATATTGTGGCAGAGCCA
1 CCAGA-ACAGATATTGTGACAGAGCCA
*
48929149 CCAAAACAGATATT-TGTAGC-GTAGCCA
1 CCAGAACAGATATTGTG-A-CAG-AGCCA
* * *
48929176 CCAGAAAAGATATTTGTGGCATAGCCA
1 CCAGAACAGATA-TTGTGACAGAGCCA
48929203 CCAGAAC
1 CCAGAAC
48929210 GTTTCCTCCA
Statistics
Matches: 72, Mismatches: 9, Indels: 13
0.77 0.10 0.14
Matches are distributed among these distances:
25 2 0.03
26 15 0.21
27 51 0.71
28 2 0.03
29 2 0.03
ACGTcount: A:0.37, C:0.22, G:0.22, T:0.19
Consensus pattern (26 bp):
CCAGAACAGATATTGTGACAGAGCCA
Found at i:48935872 original size:37 final size:37
Alignment explanation
Indices: 48935814--48935921 Score: 189
Period size: 37 Copynumber: 2.9 Consensus size: 37
48935804 GCTCAGACGG
* *
48935814 AATCTCCACACGAAGTTATCGGGTCTTACCCGGACAA
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAA
*
48935851 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAA
48935888 AATCTCCACACGTAGTCATCGGGTCTTACCCGGA
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGA
48935922 ATATATTTCC
Statistics
Matches: 68, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 68 1.00
ACGTcount: A:0.26, C:0.31, G:0.19, T:0.23
Consensus pattern (37 bp):
AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAA
Found at i:48937428 original size:79 final size:78
Alignment explanation
Indices: 48937328--48937552 Score: 251
Period size: 79 Copynumber: 2.8 Consensus size: 78
48937318 GCTCCTCGTT
* *
48937328 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAATTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTC-GGACTTAGCCCGG-TATAGTAATTCGCACAAATGCCTTCGGGACTTAGCCCGG
48937393 ATTTAGTAACTCGCA
64 ATTTAGTAACTCGCA
* * *
48937408 CAAATGCCTTCAGG-CTTAGCCCAGAATTAGT-ATCTCGCACAAATGCCTTC-GGATCTTAGTCC
1 CAAATGCCTTC-GGACTTAGCCCGGTA-TAGTAAT-TCGCACAAATGCCTTCGGGA-CTTAGCCC
*
48937470 GGATTTAGTATCTCGCA
62 GGATTTAGTAACTCGCA
* * * *
48937487 CAAATGCCTTCGGATCTTAGTCCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGGA-CTTAGCCCGG-TATAGT-AATTCGCACAAATGCCTTCGGGACTTAGCCCG
48937551 GA
63 GA
48937553 CATCATTCAA
Statistics
Matches: 122, Mismatches: 14, Indels: 18
0.79 0.09 0.12
Matches are distributed among these distances:
78 8 0.07
79 61 0.50
80 40 0.33
81 12 0.10
82 1 0.01
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.26
Consensus pattern (78 bp):
CAAATGCCTTCGGACTTAGCCCGGTATAGTAATTCGCACAAATGCCTTCGGGACTTAGCCCGGAT
TTAGTAACTCGCA
Found at i:48937449 original size:39 final size:39
Alignment explanation
Indices: 48937328--48937552 Score: 235
Period size: 40 Copynumber: 5.6 Consensus size: 39
48937318 GCTCCTCGTT
*
48937328 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAAT-TCGCA
1 CAAATGCCTTC-GGACTTAGCCCGGATT-TAGT-ATCTCGCA
* *
48937368 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTC-GGACTTAGCCCGGATTTAGTATCTCGCA
* *
48937408 CAAATGCCTTCAGG-CTTAGCCCAGAATTAGTATCTCGCA
1 CAAATGCCTTC-GGACTTAGCCCGGATTTAGTATCTCGCA
*
48937447 CAAATGCCTTCGGATCTTAGTCCGGATTTAGTATCTCGCA
1 CAAATGCCTTCGGA-CTTAGCCCGGATTTAGTATCTCGCA
* * * *
48937487 CAAATGCCTTCGGATCTTAGTCCGGATATGGTCA-CTTAGCA
1 CAAATGCCTTCGGA-CTTAGCCCGGATTTAGT-ATC-TCGCA
48937528 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTC-GGACTTAGCCCGGA
48937553 CATCATTCAA
Statistics
Matches: 163, Mismatches: 15, Indels: 14
0.85 0.08 0.07
Matches are distributed among these distances:
38 2 0.01
39 33 0.20
40 114 0.70
41 14 0.09
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.26
Consensus pattern (39 bp):
CAAATGCCTTCGGACTTAGCCCGGATTTAGTATCTCGCA
Found at i:48937512 original size:119 final size:120
Alignment explanation
Indices: 48937328--48937549 Score: 276
Period size: 119 Copynumber: 1.9 Consensus size: 120
48937318 GCTCCTCGTT
48937328 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAATTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAATTCGCACAAATGCCTTCGGGACTTAACCCGG
* *
48937393 ATTTAGTAAC-TCGCACAAATGCCTTCAGG-CTTAGCCCAGAATTAGTATCTCGCA
66 ATATAGTAACTTAGCACAAA-GCCTTCAGGACTTAGCCCAGAATTAGTATCTCGCA
* * **
48937447 CAAATGCCTTC-GGATCTTAGTCCGGATT-TAGT-ATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CAAATGCCTTCGGGA-CATAGCCCGG-TTATAGTAAT-TCGCACAAATGCCTTCGGGA-CTTAAC
* * *
48937508 CCGGATATGGTCACTTAGCACAAAGCCTTCGGGACTTAGCCC
62 CCGGATATAGTAACTTAGCACAAAGCCTTCAGGACTTAGCCC
48937550 GGACATCATT
Statistics
Matches: 88, Mismatches: 9, Indels: 11
0.81 0.08 0.10
Matches are distributed among these distances:
118 8 0.09
119 62 0.70
120 18 0.20
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.27
Consensus pattern (120 bp):
CAAATGCCTTCGGGACATAGCCCGGTTATAGTAATTCGCACAAATGCCTTCGGGACTTAACCCGG
ATATAGTAACTTAGCACAAAGCCTTCAGGACTTAGCCCAGAATTAGTATCTCGCA
Found at i:48939265 original size:48 final size:48
Alignment explanation
Indices: 48939207--48939389 Score: 314
Period size: 48 Copynumber: 3.8 Consensus size: 48
48939197 GCACATCGCC
*
48939207 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
* * *
48939255 TATATATTTCACATT-GACCATTCAGCTTTACCACATATGCATATCTCA
1 TACATATTTCACATTAG-CCATTCGGCTTTACCACATATACATATCTCA
48939303 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
48939351 TACATATTTCACATTAGCCATTCGGCTTTACCACATATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATA
48939390 TGCATGTTCA
Statistics
Matches: 126, Mismatches: 7, Indels: 4
0.92 0.05 0.03
Matches are distributed among these distances:
47 1 0.01
48 124 0.98
49 1 0.01
ACGTcount: A:0.31, C:0.27, G:0.07, T:0.36
Consensus pattern (48 bp):
TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
Found at i:48939438 original size:47 final size:47
Alignment explanation
Indices: 48939359--48939552 Score: 273
Period size: 47 Copynumber: 4.1 Consensus size: 47
48939349 CATACATATT
* * * *
48939359 TCACATTAGCCATTCGGCTTTACCACATATATGCATGTTCATATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* * *
48939406 CCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
48939453 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* * **
48939500 TCACATTGGCCATTCGGCCTTAT-ATAATATATACACATTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCA-CATATATGCATGTTCACATTCA
48939547 TCACAT
1 TCACAT
48939553 AAAATCCTAA
Statistics
Matches: 132, Mismatches: 14, Indels: 2
0.89 0.09 0.01
Matches are distributed among these distances:
46 1 0.01
47 131 0.99
ACGTcount: A:0.28, C:0.28, G:0.11, T:0.33
Consensus pattern (47 bp):
TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
Found at i:48944188 original size:27 final size:27
Alignment explanation
Indices: 48944139--48944252 Score: 94
Period size: 27 Copynumber: 4.2 Consensus size: 27
48944129 AGCATGGCTG
*
48944139 CCAGAACAGATATTGT-GACAGAGTCA
1 CCAGAACAGATATTGTAGACAGAGCCA
*
48944165 CCAGATACAGATATTGTAG-TAGAGCCA
1 CCAGA-ACAGATATTGTAGACAGAGCCA
*
48944192 CCAGAACAAATATTTGTAG-C-GTAGCCA
1 CCAGAACAGATA-TTGTAGACAG-AGCCA
* * *
48944219 CCAGAAACAGATTTTTGT-GGCATAGCCA
1 CCAG-AACAGA-TATTGTAGACAGAGCCA
48944247 CCAGAA
1 CCAGAA
48944253 AGCTTCCTCC
Statistics
Matches: 73, Mismatches: 7, Indels: 15
0.77 0.07 0.16
Matches are distributed among these distances:
26 12 0.16
27 40 0.55
28 20 0.27
29 1 0.01
ACGTcount: A:0.37, C:0.21, G:0.21, T:0.21
Consensus pattern (27 bp):
CCAGAACAGATATTGTAGACAGAGCCA
Found at i:48944236 original size:28 final size:28
Alignment explanation
Indices: 48944163--48944253 Score: 96
Period size: 28 Copynumber: 3.3 Consensus size: 28
48944153 GTGACAGAGT
* * * *
48944163 CACCAGATACAGATA-TTGTAGTAGAGC
1 CACCAGAAACAAATATTTGTAGCATAGC
*
48944190 CACCAG-AACAAATATTTGTAGCGTAGC
1 CACCAGAAACAAATATTTGTAGCATAGC
* * *
48944217 CACCAGAAACAGATTTTTGTGGCATAGC
1 CACCAGAAACAAATATTTGTAGCATAGC
48944245 CACCAGAAA
1 CACCAGAAA
48944254 GCTTCCTCCA
Statistics
Matches: 53, Mismatches: 9, Indels: 3
0.82 0.14 0.05
Matches are distributed among these distances:
26 6 0.11
27 21 0.40
28 26 0.49
ACGTcount: A:0.37, C:0.22, G:0.20, T:0.21
Consensus pattern (28 bp):
CACCAGAAACAAATATTTGTAGCATAGC
Found at i:48949675 original size:43 final size:41
Alignment explanation
Indices: 48949595--48949696 Score: 109
Period size: 43 Copynumber: 2.4 Consensus size: 41
48949585 AGATATCGTG
* * *
48949595 TAAGACCGTGTCTGAGACATCGGCCTCGATTGAGATTT-ATGTA
1 TAAGACCATGTCTGGGACATCGGCATCGATT-AGATTTCA--TA
48949638 TAAGACCATGTCTGGGACATCGGCATCGTATCT-GATTTCATA
1 TAAGACCATGTCTGGGACATCGGCATCG-AT-TAGATTTCATA
*
48949680 TAAGACCTTGTCTGGGA
1 TAAGACCATGTCTGGGA
48949697 TAGAGGCATC
Statistics
Matches: 52, Mismatches: 4, Indels: 7
0.83 0.06 0.11
Matches are distributed among these distances:
42 18 0.35
43 30 0.58
44 3 0.06
45 1 0.02
ACGTcount: A:0.25, C:0.20, G:0.25, T:0.30
Consensus pattern (41 bp):
TAAGACCATGTCTGGGACATCGGCATCGATTAGATTTCATA
Found at i:48960202 original size:20 final size:20
Alignment explanation
Indices: 48960177--48960214 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
48960167 TGTATAGTGG
48960177 AAAAATTTTCT-AAGTTCTGT
1 AAAAA-TTTCTAAAGTTCTGT
48960197 AAAAATTTCTAAAGTTCT
1 AAAAATTTCTAAAGTTCT
48960215 CGGTTTAGTC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
19 5 0.29
20 12 0.71
ACGTcount: A:0.39, C:0.11, G:0.08, T:0.42
Consensus pattern (20 bp):
AAAAATTTCTAAAGTTCTGT
Found at i:48972504 original size:6 final size:6
Alignment explanation
Indices: 48972490--48972555 Score: 78
Period size: 6 Copynumber: 10.7 Consensus size: 6
48972480 TATGGAACAG
* *
48972490 AAAAAT AAAATT AAAATT GCAAAATT AAAATT AAAATT AAAATT AAAATG
1 AAAATT AAAATT AAAATT --AAAATT AAAATT AAAATT AAAATT AAAATT
* *
48972540 AAAATG AAAATG AAAA
1 AAAATT AAAATT AAAA
48972556 AATTCTTTTG
Statistics
Matches: 56, Mismatches: 2, Indels: 4
0.90 0.03 0.06
Matches are distributed among these distances:
6 50 0.89
8 6 0.11
ACGTcount: A:0.68, C:0.02, G:0.06, T:0.24
Consensus pattern (6 bp):
AAAATT
Found at i:48974246 original size:22 final size:22
Alignment explanation
Indices: 48974221--48974263 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
48974211 CACTAAGTCA
48974221 ACAGGACGGCTCAACACCGTAG
1 ACAGGACGGCTCAACACCGTAG
*
48974243 ACAGGACGGCTCAACGCCGTA
1 ACAGGACGGCTCAACACCGTA
48974264 AATATCGCAG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.30, C:0.33, G:0.28, T:0.09
Consensus pattern (22 bp):
ACAGGACGGCTCAACACCGTAG
Found at i:48974552 original size:27 final size:27
Alignment explanation
Indices: 48974514--48974569 Score: 69
Period size: 27 Copynumber: 2.1 Consensus size: 27
48974504 TACCATATAG
* *
48974514 GGGTATTACGGTTATTTTACACTA-CAA
1 GGGTATTACGGTGATTGTACA-TATCAA
*
48974541 GGGTATTTCGGTGATTGTACATATCAA
1 GGGTATTACGGTGATTGTACATATCAA
48974568 GG
1 GG
48974570 TCTTAACGAC
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
26 2 0.08
27 23 0.92
ACGTcount: A:0.27, C:0.12, G:0.25, T:0.36
Consensus pattern (27 bp):
GGGTATTACGGTGATTGTACATATCAA
Found at i:48975513 original size:100 final size:99
Alignment explanation
Indices: 48975333--48975526 Score: 334
Period size: 100 Copynumber: 1.9 Consensus size: 99
48975323 CTAGTCTAAT
*
48975333 TCCACCTCCTACACAGCTCAAACAGAAAAATAAATACCCATTGCGCATCCCAAGACTTGAACCTT
1 TCCACCTCCTACACAGCTCAAACAGAAAAATAAATACCCATTCCGCATCCCAAGACTTGAACCTT
* * *
48975398 ATACCTCATAGTTACACAACACTCCACCTCCAAC
66 AGACCTCACAGTTACACAACACGCCACCTCCAAC
*
48975432 TCCACCTCCTACACAGCTCAAACAGAAAAATAAATACCCCATTCCGTATCCCAAGACTTGAACCT
1 TCCACCTCCTACACAGCTCAAACAGAAAAATAAATA-CCCATTCCGCATCCCAAGACTTGAACCT
48975497 TAGACCTCACAGTTACACAACACGCCACCT
65 TAGACCTCACAGTTACACAACACGCCACCT
48975527 TGCCACTACA
Statistics
Matches: 89, Mismatches: 5, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
99 36 0.40
100 53 0.60
ACGTcount: A:0.36, C:0.37, G:0.08, T:0.20
Consensus pattern (99 bp):
TCCACCTCCTACACAGCTCAAACAGAAAAATAAATACCCATTCCGCATCCCAAGACTTGAACCTT
AGACCTCACAGTTACACAACACGCCACCTCCAAC
Found at i:48983101 original size:40 final size:39
Alignment explanation
Indices: 48983017--48983238 Score: 256
Period size: 40 Copynumber: 5.6 Consensus size: 39
48983007 TTGAATGATG
* * *
48983017 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAC-CAT
1 TCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAT
* * *
48983056 ATCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAT
48983097 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAG-TACTAAT
1 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAT
*
48983135 TCCGGG-TAAGCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAT
*
48983173 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AT
1 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAT
* *
48983212 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAG-CCCGAAGGCATTTG
48983239 AACGAGGAGC
Statistics
Matches: 162, Mismatches: 14, Indels: 12
0.86 0.07 0.06
Matches are distributed among these distances:
37 24 0.15
38 25 0.15
39 24 0.15
40 80 0.49
41 9 0.06
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (39 bp):
TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAT
Found at i:48991508 original size:12 final size:13
Alignment explanation
Indices: 48991484--48991531 Score: 55
Period size: 12 Copynumber: 3.8 Consensus size: 13
48991474 ATTCTAGCTA
48991484 AAAAGGAAGAAGAG
1 AAAA-GAAGAAGAG
48991498 AAAAG-AGAAGAG
1 AAAAGAAGAAGAG
*
48991510 AGAAGAAGAAGA-
1 AAAAGAAGAAGAG
*
48991522 AGAAGAAGAA
1 AAAAGAAGAA
48991532 TATACTCCTT
Statistics
Matches: 32, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
12 21 0.66
13 7 0.22
14 4 0.12
ACGTcount: A:0.67, C:0.00, G:0.33, T:0.00
Consensus pattern (13 bp):
AAAAGAAGAAGAG
Found at i:48991518 original size:3 final size:3
Alignment explanation
Indices: 48991489--48991531 Score: 56
Period size: 3 Copynumber: 15.0 Consensus size: 3
48991479 AGCTAAAAAG
48991489 GAA GAA G-A GAA -AA G-A GAA GAGA GAA GAA GAA GAA GAA GAA GAA
1 GAA GAA GAA GAA GAA GAA GAA GA-A GAA GAA GAA GAA GAA GAA GAA
48991532 TATACTCCTT
Statistics
Matches: 36, Mismatches: 0, Indels: 8
0.82 0.00 0.18
Matches are distributed among these distances:
2 6 0.17
3 27 0.75
4 3 0.08
ACGTcount: A:0.65, C:0.00, G:0.35, T:0.00
Consensus pattern (3 bp):
GAA
Found at i:48998731 original size:27 final size:27
Alignment explanation
Indices: 48998700--48998876 Score: 196
Period size: 27 Copynumber: 6.6 Consensus size: 27
48998690 TAAATTGTAC
48998700 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
48998727 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
48998753 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
48998781 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
48998809 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
48998836 AGC-CTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
48998862 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
48998877 GACTCAATAT
Statistics
Matches: 127, Mismatches: 19, Indels: 8
0.82 0.12 0.05
Matches are distributed among these distances:
26 23 0.18
27 81 0.64
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:48998849 original size:81 final size:81
Alignment explanation
Indices: 48998701--48998855 Score: 224
Period size: 82 Copynumber: 1.9 Consensus size: 81
48998691 AAATTGTACA
* *
48998701 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAAGTGT
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAAGTGT
48998766 GCGAATTGACCATGCG
66 GCGAATTGACCATGCG
** *
48998782 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGC-CTAAGT
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACTAAGT
*
48998845 GTGCGAGTTGA
64 GTGCGAATTGA
48998856 TTATATAGCA
Statistics
Matches: 66, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
81 32 0.48
82 34 0.52
ACGTcount: A:0.26, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:48998867 original size:81 final size:81
Alignment explanation
Indices: 48998697--48998876 Score: 220
Period size: 81 Copynumber: 2.2 Consensus size: 81
48998687 GATTAAATTG
* *
48998697 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
48998762 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
48998778 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGC-CT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
48998841 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
48998859 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
48998877 GACTCAATAT
Statistics
Matches: 83, Mismatches: 14, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
81 49 0.59
82 34 0.41
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:49002767 original size:20 final size:19
Alignment explanation
Indices: 49002722--49002771 Score: 59
Period size: 20 Copynumber: 2.6 Consensus size: 19
49002712 TTTTATAATT
49002722 TTGAATGCAAATGATGCAA
1 TTGAATGCAAATGATGCAA
49002741 -TGAAATGCTATAA-GATGCAA
1 TTG-AATGC-A-AATGATGCAA
49002761 TTGAATGCAAA
1 TTGAATGCAAA
49002772 ATGTATCGAT
Statistics
Matches: 27, Mismatches: 0, Indels: 9
0.75 0.00 0.25
Matches are distributed among these distances:
18 4 0.15
19 6 0.22
20 13 0.48
21 4 0.15
ACGTcount: A:0.44, C:0.10, G:0.20, T:0.26
Consensus pattern (19 bp):
TTGAATGCAAATGATGCAA
Found at i:49005795 original size:19 final size:19
Alignment explanation
Indices: 49005771--49005821 Score: 84
Period size: 19 Copynumber: 2.7 Consensus size: 19
49005761 CCAAGATTAC
49005771 AAGATTGCATATCATATCT
1 AAGATTGCATATCATATCT
*
49005790 AAGATTGTATATCATATCT
1 AAGATTGCATATCATATCT
*
49005809 AAGATTGGATATC
1 AAGATTGCATATC
49005822 CTTAAAGATT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 30 1.00
ACGTcount: A:0.37, C:0.12, G:0.14, T:0.37
Consensus pattern (19 bp):
AAGATTGCATATCATATCT
Found at i:49007315 original size:34 final size:34
Alignment explanation
Indices: 49007264--49007366 Score: 95
Period size: 34 Copynumber: 3.1 Consensus size: 34
49007254 GCAGTACAAA
* * * *
49007264 CAGTTTGGGCCTAAGCCC-TTAACAATAGCATTAT
1 CAGTGTGGGCCTTAGCCCATT-ACAATAACAGTAT
*
49007298 CAGTGTGGGCCTTAGCCCATTACAGTAACAGTAT
1 CAGTGTGGGCCTTAGCCCATTACAATAACAGTAT
* * *
49007332 CAGTGTGGGTCGTAGCCCAATT-CAGT-ACAGTAT
1 CAGTGTGGGCCTTAGCCC-ATTACAATAACAGTAT
49007365 CA
1 CA
49007367 AAGATGCAAA
Statistics
Matches: 60, Mismatches: 7, Indels: 5
0.83 0.10 0.07
Matches are distributed among these distances:
33 9 0.15
34 46 0.77
35 5 0.08
ACGTcount: A:0.27, C:0.23, G:0.22, T:0.27
Consensus pattern (34 bp):
CAGTGTGGGCCTTAGCCCATTACAATAACAGTAT
Found at i:49010570 original size:15 final size:15
Alignment explanation
Indices: 49010550--49010587 Score: 51
Period size: 14 Copynumber: 2.6 Consensus size: 15
49010540 TACAATTTTA
*
49010550 TTTTTAATTTTTGTT
1 TTTTTAATTTTTATT
49010565 TTTTT-ATTTTTATT
1 TTTTTAATTTTTATT
*
49010579 TATTTAATT
1 TTTTTAATT
49010588 CCCTTTTAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
14 12 0.60
15 8 0.40
ACGTcount: A:0.18, C:0.00, G:0.03, T:0.79
Consensus pattern (15 bp):
TTTTTAATTTTTATT
Found at i:49014677 original size:24 final size:24
Alignment explanation
Indices: 49014649--49014700 Score: 61
Period size: 24 Copynumber: 2.2 Consensus size: 24
49014639 AGGATCAGGT
*
49014649 GGAAGA-TCCAGAAGAAGATTTAGA
1 GGAAGACT-CAGAAGAAGATCTAGA
* *
49014673 GGAAGACTTAGAAGAAGATCTCGA
1 GGAAGACTCAGAAGAAGATCTAGA
49014697 GGAA
1 GGAA
49014701 AATTTAGATT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
24 23 0.96
25 1 0.04
ACGTcount: A:0.44, C:0.10, G:0.31, T:0.15
Consensus pattern (24 bp):
GGAAGACTCAGAAGAAGATCTAGA
Found at i:49014707 original size:24 final size:24
Alignment explanation
Indices: 49014658--49014708 Score: 66
Period size: 24 Copynumber: 2.1 Consensus size: 24
49014648 TGGAAGATCC
* *
49014658 AGAAGAAGATTTAGAGGAAGACTT
1 AGAAGAAGATCTAGAGGAAAACTT
* *
49014682 AGAAGAAGATCTCGAGGAAAATTT
1 AGAAGAAGATCTAGAGGAAAACTT
49014706 AGA
1 AGA
49014709 TTTAGAAGGT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.47, C:0.06, G:0.27, T:0.20
Consensus pattern (24 bp):
AGAAGAAGATCTAGAGGAAAACTT
Found at i:49019762 original size:20 final size:20
Alignment explanation
Indices: 49019733--49019776 Score: 79
Period size: 20 Copynumber: 2.2 Consensus size: 20
49019723 GCTGGAGTAG
49019733 AACACGATTTTCATTTCCAA
1 AACACGATTTTCATTTCCAA
*
49019753 AACACTATTTTCATTTCCAA
1 AACACGATTTTCATTTCCAA
49019773 AACA
1 AACA
49019777 ATAACTGTTT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.39, C:0.25, G:0.02, T:0.34
Consensus pattern (20 bp):
AACACGATTTTCATTTCCAA
Found at i:49025071 original size:41 final size:40
Alignment explanation
Indices: 49024973--49025163 Score: 159
Period size: 43 Copynumber: 4.6 Consensus size: 40
49024963 TTTTATCAAA
* *
49024973 TCACCGGCATTTAGCCTGCTAGGTTTTAAACCCGAATTCA-
1 TCACCGGCATTTAGCCTGCTAGGCTTTAAGCCCGAA-TCAT
*** * * *
49025013 TCACCGGCACGAAGCCTGCTAGACTTTAAGTCTGAACTCAT
1 TCACCGGCATTTAGCCTGCTAGGCTTTAAGCCCGAA-TCAT
* *
49025054 TCACCGGCATTTCGCCTGCTAGGCTTGAAGCCCGATATCATT
1 TCACCGGCATTTAGCCTGCTAGGCTTTAAGCCCGA-ATCA-T
*** * *
49025096 TCACCGGCATTATAGCCTGCTAGGCCCAAAGCCCTATATTAT
1 TCACCGGCATT-TAGCCTGCTAGGCTTTAAGCCCGA-ATCAT
*
49025138 CTCACTGGCATTATAGCCTGCTAGGC
1 -TCACCGGCATT-TAGCCTGCTAGGC
49025164 CCGAAGCCCG
Statistics
Matches: 122, Mismatches: 24, Indels: 7
0.80 0.16 0.05
Matches are distributed among these distances:
40 31 0.25
41 30 0.25
42 14 0.11
43 47 0.39
ACGTcount: A:0.24, C:0.30, G:0.19, T:0.27
Consensus pattern (40 bp):
TCACCGGCATTTAGCCTGCTAGGCTTTAAGCCCGAATCAT
Found at i:49025128 original size:43 final size:43
Alignment explanation
Indices: 49025053--49025176 Score: 169
Period size: 43 Copynumber: 2.9 Consensus size: 43
49025043 TCTGAACTCA
* **
49025053 TTCACCGGCATT-TCGCCTGCTAGGCTTGAAGCCCGATATCAT
1 TTCACCGGCATTATAGCCTGCTAGGCCCGAAGCCCGATATCAT
* * *
49025095 TTCACCGGCATTATAGCCTGCTAGGCCCAAAGCCCTATATTAT
1 TTCACCGGCATTATAGCCTGCTAGGCCCGAAGCCCGATATCAT
* *
49025138 CTCACTGGCATTATAGCCTGCTAGGCCCGAAGCCCGATA
1 TTCACCGGCATTATAGCCTGCTAGGCCCGAAGCCCGATA
49025177 ATATTATTCA
Statistics
Matches: 71, Mismatches: 10, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
42 12 0.17
43 59 0.83
ACGTcount: A:0.23, C:0.31, G:0.20, T:0.26
Consensus pattern (43 bp):
TTCACCGGCATTATAGCCTGCTAGGCCCGAAGCCCGATATCAT
Found at i:49027758 original size:41 final size:41
Alignment explanation
Indices: 49027711--49027788 Score: 156
Period size: 41 Copynumber: 1.9 Consensus size: 41
49027701 TATGAAAAGT
49027711 AAGGGGTATCACATCTTTTTCTGAATTTATTCTGAATCTGA
1 AAGGGGTATCACATCTTTTTCTGAATTTATTCTGAATCTGA
49027752 AAGGGGTATCACATCTTTTTCTGAATTTATTCTGAAT
1 AAGGGGTATCACATCTTTTTCTGAATTTATTCTGAAT
49027789 TTGAGTCAAT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 37 1.00
ACGTcount: A:0.27, C:0.14, G:0.17, T:0.42
Consensus pattern (41 bp):
AAGGGGTATCACATCTTTTTCTGAATTTATTCTGAATCTGA
Found at i:49030985 original size:42 final size:40
Alignment explanation
Indices: 49030905--49031005 Score: 105
Period size: 43 Copynumber: 2.4 Consensus size: 40
49030895 AGCTTGTACA
* * *
49030905 ATGCCATATCCCAGATATGGTCTTACATGTTATCATATATCG
1 ATGCCATATCCCAGACAGGGTCTTACACG-TATCATATA-CG
*
49030947 ATGCCACTATCCCAGACAGGGTCTTACACG-AGTTATATACG
1 ATGCCA-TATCCCAGACAGGGTCTTACACGTA-TCATATACG
*
49030988 ATGCCAATGTCCCAGACA
1 ATGCC-ATATCCCAGACA
49031006 TGGTTTTGCA
Statistics
Matches: 51, Mismatches: 5, Indels: 7
0.81 0.08 0.11
Matches are distributed among these distances:
41 18 0.35
42 13 0.25
43 20 0.39
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.28
Consensus pattern (40 bp):
ATGCCATATCCCAGACAGGGTCTTACACGTATCATATACG
Found at i:49031827 original size:10 final size:10
Alignment explanation
Indices: 49031812--49031837 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
49031802 CAAAAACATA
49031812 AAAATCGAAC
1 AAAATCGAAC
49031822 AAAATCGAAC
1 AAAATCGAAC
49031832 AAAATC
1 AAAATC
49031838 CATACCTCAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.62, C:0.19, G:0.08, T:0.12
Consensus pattern (10 bp):
AAAATCGAAC
Found at i:49033723 original size:79 final size:78
Alignment explanation
Indices: 49033621--49033844 Score: 272
Period size: 79 Copynumber: 2.8 Consensus size: 78
49033611 GCTCCTCGTT
* *
49033621 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGG-CTTAGCCCGG-TATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGG
* *
49033686 ATTTATTAACTCGCA
64 AATTAGTAACTCGCA
* *
49033701 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGG-CTTAGCCCGGA
1 CAAATGCCTTCGGGCTTAGCCCGGTA-TAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGA
*
49033765 ATTAGTATCTCGCA
65 ATTAGTAACTCGCA
* * * * *
49033779 CAAATGCCTTCGGATCTTAGTCCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGG-GCTTAGCCCGG-TATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGCCCG
49033843 GA
63 GA
49033845 CATCATTCAA
Statistics
Matches: 125, Mismatches: 14, Indels: 10
0.84 0.09 0.07
Matches are distributed among these distances:
78 35 0.28
79 56 0.45
80 34 0.27
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (78 bp):
CAAATGCCTTCGGGCTTAGCCCGGTATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAA
TTAGTAACTCGCA
Found at i:49033738 original size:39 final size:40
Alignment explanation
Indices: 49033621--49033844 Score: 271
Period size: 40 Copynumber: 5.7 Consensus size: 40
49033611 GCTCCTCGTT
* *
49033621 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTAACTCGCA
* * *
49033661 CAAATGCCTTCGGGACTTAACCCGGATTTATTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
*
49033701 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
*
49033740 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
* * * *
49033779 CAAATGCCTTC-GGATCTTAGTCCGG-ATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGAAT-TAGTAAC-TCGCA
49033820 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
49033845 CATCATTCAA
Statistics
Matches: 164, Mismatches: 13, Indels: 13
0.86 0.07 0.07
Matches are distributed among these distances:
38 2 0.01
39 73 0.45
40 76 0.46
41 13 0.08
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
Found at i:49041659 original size:40 final size:40
Alignment explanation
Indices: 49041583--49041768 Score: 227
Period size: 40 Copynumber: 4.7 Consensus size: 40
49041573 GCTCCTCGTT
*
49041583 CAAATGCCTTCGGGACATAGCCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAG-CCCGGATT-TAGTAACTCGCA
*
49041624 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* *
49041664 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * * *
49041703 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
49041744 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
49041769 CATCATTCAA
Statistics
Matches: 127, Mismatches: 13, Indels: 11
0.84 0.09 0.07
Matches are distributed among these distances:
38 2 0.02
39 33 0.26
40 61 0.48
41 31 0.24
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:49041706 original size:79 final size:82
Alignment explanation
Indices: 49041583--49041768 Score: 231
Period size: 79 Copynumber: 2.3 Consensus size: 82
49041573 GCTCCTCGTT
* *
49041583 CAAATGCCTTCGGGACATAGCCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACC
1 CAAATGCCTTCGGGACTTAG-CCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACC
* *
49041646 CGGATTTAGTAAC-TCGCA
64 CGGATATAGTAACTTAGCA
* **
49041664 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
* *
49041727 GATATGGTCACTTAGCA
66 GATATAGTAACTTAGCA
49041744 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
49041769 CATCATTCAA
Statistics
Matches: 92, Mismatches: 9, Indels: 9
0.84 0.08 0.08
Matches are distributed among these distances:
78 3 0.03
79 51 0.55
80 24 0.26
81 14 0.15
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (82 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
GATATAGTAACTTAGCA
Found at i:49048510 original size:39 final size:40
Alignment explanation
Indices: 49048474--49048657 Score: 198
Period size: 39 Copynumber: 4.7 Consensus size: 40
49048464 GCTACTCGTT
*
49048474 CAAATGCCTTCGGGACATAGCCCGG-TTATAG-AACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
* * *
49048513 CAATTGCCTTCGGGACTTAACCCGGATTTAGTAACTCACA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* *
49048553 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * * * *
49048592 CAAATGCCTTC-AGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
49048633 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
49048658 CATCATTCAA
Statistics
Matches: 120, Mismatches: 19, Indels: 11
0.80 0.13 0.07
Matches are distributed among these distances:
38 1 0.01
39 57 0.47
40 52 0.43
41 10 0.08
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:49048590 original size:79 final size:81
Alignment explanation
Indices: 49048474--49048657 Score: 209
Period size: 79 Copynumber: 2.3 Consensus size: 81
49048464 GCTACTCGTT
* * * *
49048474 CAAATGCCTTCGGGACATAGCCCGG-TTATAGAACTCGCACAATTGCCTTCGGGA-CTTAACCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGAACTCGCACAAATGCCTTC-AGATCTTAACCCG
*
49048537 GATTTAGTAACTCA-CA
65 GATATAGTAACTCAGCA
* **
49048553 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTCAGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAG-AACTCGCACAAATGCCTTCAGATCTTAACCCG
* * *
49048616 GATATGGTCACTTAGCA
65 GATATAGTAACTCAGCA
49048633 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
49048658 CATCATTCAA
Statistics
Matches: 89, Mismatches: 11, Indels: 9
0.82 0.10 0.08
Matches are distributed among these distances:
78 14 0.16
79 58 0.65
80 17 0.19
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (81 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATATAGAACTCGCACAAATGCCTTCAGATCTTAACCCGG
ATATAGTAACTCAGCA
Found at i:49051048 original size:10 final size:10
Alignment explanation
Indices: 49051021--49051054 Score: 50
Period size: 10 Copynumber: 3.3 Consensus size: 10
49051011 AATTTTGCAA
*
49051021 ATATATGTTT
1 ATATATTTTT
49051031 ATATTATTTTT
1 ATA-TATTTTT
49051042 ATATATTTTT
1 ATATATTTTT
49051052 ATA
1 ATA
49051055 ATTACATTTA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
10 13 0.59
11 9 0.41
ACGTcount: A:0.32, C:0.00, G:0.03, T:0.65
Consensus pattern (10 bp):
ATATATTTTT
Found at i:49054975 original size:12 final size:12
Alignment explanation
Indices: 49054958--49054982 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
49054948 AAAGATTGGA
49054958 AAAATAAAGAAG
1 AAAATAAAGAAG
49054970 AAAATAAAGAAG
1 AAAATAAAGAAG
49054982 A
1 A
49054983 TAGATGGAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.76, C:0.00, G:0.16, T:0.08
Consensus pattern (12 bp):
AAAATAAAGAAG
Found at i:49056949 original size:12 final size:12
Alignment explanation
Indices: 49056932--49056961 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
49056922 CCTCACACGC
49056932 CCGTGTGCTAGG
1 CCGTGTGCTAGG
49056944 CCGTGTGCTAGG
1 CCGTGTGCTAGG
*
49056956 TCGTGT
1 CCGTGT
49056962 AATAGCCTGA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.07, C:0.23, G:0.40, T:0.30
Consensus pattern (12 bp):
CCGTGTGCTAGG
Found at i:49057422 original size:41 final size:44
Alignment explanation
Indices: 49057341--49057437 Score: 139
Period size: 45 Copynumber: 2.2 Consensus size: 44
49057331 AGATATTCTA
*
49057341 GGAA-TATTTTATTTTATCTTTTAGTAGTTTATTAGATAGAATAAG
1 GGAATTATTTTATCTTATCTTTTAGTAGTTTATT--ATAGAATAAG
49057386 GGAATTATTTT-TCTTATCTTTTAGTAGTTTA-T-TAGAATAAG
1 GGAATTATTTTATCTTATCTTTTAGTAGTTTATTATAGAATAAG
49057427 GGAATTATTTT
1 GGAATTATTTT
49057438 CTCAATTAAC
Statistics
Matches: 50, Mismatches: 1, Indels: 6
0.88 0.02 0.11
Matches are distributed among these distances:
41 20 0.40
44 1 0.02
45 23 0.46
46 6 0.12
ACGTcount: A:0.31, C:0.03, G:0.15, T:0.51
Consensus pattern (44 bp):
GGAATTATTTTATCTTATCTTTTAGTAGTTTATTATAGAATAAG
Found at i:49074948 original size:41 final size:42
Alignment explanation
Indices: 49074883--49074971 Score: 128
Period size: 41 Copynumber: 2.1 Consensus size: 42
49074873 ATTCTAGGAA
* * *
49074883 TATTTTATTTTATCTTTTAGTAGTTTATTAGAATAA-GAGAAT
1 TATTTTATCTTATATTTTAATAGTTTATTAGAATAAGGA-AAT
49074925 TATTTT-TCTTATATTTTAATAGTTTATTAGAATAAGGAAAT
1 TATTTTATCTTATATTTTAATAGTTTATTAGAATAAGGAAAT
49074966 TATTTT
1 TATTTT
49074972 CCCAATTAGC
Statistics
Matches: 43, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
41 35 0.81
42 8 0.19
ACGTcount: A:0.34, C:0.02, G:0.10, T:0.54
Consensus pattern (42 bp):
TATTTTATCTTATATTTTAATAGTTTATTAGAATAAGGAAAT
Found at i:49076105 original size:25 final size:24
Alignment explanation
Indices: 49076077--49076141 Score: 69
Period size: 24 Copynumber: 2.7 Consensus size: 24
49076067 TGGAAACTAG
*
49076077 TAAGCTCATACGAGGTAAGAA-TCGA
1 TAAGCTCATACGAGCT--GAATTCGA
* * *
49076102 TAAGCTCTTACAAGCTGAATTCGG
1 TAAGCTCATACGAGCTGAATTCGA
49076126 TAAGCTCATACGAGCT
1 TAAGCTCATACGAGCT
49076142 ATGGTGTGTC
Statistics
Matches: 33, Mismatches: 6, Indels: 3
0.79 0.14 0.07
Matches are distributed among these distances:
23 3 0.09
24 17 0.52
25 13 0.39
ACGTcount: A:0.34, C:0.20, G:0.22, T:0.25
Consensus pattern (24 bp):
TAAGCTCATACGAGCTGAATTCGA
Found at i:49082606 original size:207 final size:207
Alignment explanation
Indices: 49082251--49082668 Score: 836
Period size: 207 Copynumber: 2.0 Consensus size: 207
49082241 TTTGAAAGTT
49082251 GAGCTACTATTGCCGTTCAACACTGTTTCGGTGCAAAATCACAATAGCTATCATAAATTTCATTG
1 GAGCTACTATTGCCGTTCAACACTGTTTCGGTGCAAAATCACAATAGCTATCATAAATTTCATTG
49082316 TTACTTTATACTCATAGGCATGATTTAATATCATACATGTATCTTTCCAAAAACCCTCATACTTT
66 TTACTTTATACTCATAGGCATGATTTAATATCATACATGTATCTTTCCAAAAACCCTCATACTTT
49082381 CATCAAATTATATAACGTTACCGTTCATACATAATACACAACGATATATATATCGCCATGAATCA
131 CATCAAATTATATAACGTTACCGTTCATACATAATACACAACGATATATATATCGCCATGAATCA
49082446 TCATAGTCATAC
196 TCATAGTCATAC
49082458 GAGCTACTATTGCCGTTCAACACTGTTTCGGTGCAAAATCACAATAGCTATCATAAATTTCATTG
1 GAGCTACTATTGCCGTTCAACACTGTTTCGGTGCAAAATCACAATAGCTATCATAAATTTCATTG
49082523 TTACTTTATACTCATAGGCATGATTTAATATCATACATGTATCTTTCCAAAAACCCTCATACTTT
66 TTACTTTATACTCATAGGCATGATTTAATATCATACATGTATCTTTCCAAAAACCCTCATACTTT
49082588 CATCAAATTATATAACGTTACCGTTCATACATAATACACAACGATATATATATCGCCATGAATCA
131 CATCAAATTATATAACGTTACCGTTCATACATAATACACAACGATATATATATCGCCATGAATCA
49082653 TCATAGTCATAC
196 TCATAGTCATAC
49082665 GAGC
1 GAGC
49082669 ACAAAATGGC
Statistics
Matches: 211, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
207 211 1.00
ACGTcount: A:0.35, C:0.22, G:0.10, T:0.33
Consensus pattern (207 bp):
GAGCTACTATTGCCGTTCAACACTGTTTCGGTGCAAAATCACAATAGCTATCATAAATTTCATTG
TTACTTTATACTCATAGGCATGATTTAATATCATACATGTATCTTTCCAAAAACCCTCATACTTT
CATCAAATTATATAACGTTACCGTTCATACATAATACACAACGATATATATATCGCCATGAATCA
TCATAGTCATAC
Found at i:49082813 original size:43 final size:42
Alignment explanation
Indices: 49082747--49082905 Score: 169
Period size: 43 Copynumber: 3.7 Consensus size: 42
49082737 AGCATATACA
* * *
49082747 ATGCCAACGTCCCAGACATGGTCTTACATGTAATCAAACATCG
1 ATGCCAATGTCCCAGACAGGGTCTTACACGTAATCAAA-ATCG
* * * *
49082790 ATGCCACTGTCCCAGACAGGGTCTTACACGAAAT-TAGATACG
1 ATGCCAATGTCCCAGACAGGGTCTTACACGTAATCAAAAT-CG
* * *
49082832 ATGCCAATGTTCCAGACATGGTCTTACACGTAAAACAAAAGTCG
1 ATGCCAATGTCCCAGACAGGGTCTTACACGT-AATCAAAA-TCG
49082876 ATGCCAATGTCCCAGAC-GTGGTCTTACACG
1 ATGCCAATGTCCCAGACAG-GGTCTTACACG
49082906 ATATCACATA
Statistics
Matches: 95, Mismatches: 16, Indels: 9
0.79 0.13 0.08
Matches are distributed among these distances:
41 2 0.02
42 30 0.32
43 31 0.33
44 31 0.33
45 1 0.01
ACGTcount: A:0.31, C:0.26, G:0.19, T:0.23
Consensus pattern (42 bp):
ATGCCAATGTCCCAGACAGGGTCTTACACGTAATCAAAATCG
Found at i:49082891 original size:44 final size:42
Alignment explanation
Indices: 49082747--49082905 Score: 185
Period size: 44 Copynumber: 3.7 Consensus size: 42
49082737 AGCATATACA
* * *
49082747 ATGCCAACGTCCCAGACATGGTCTTACATGTAATCAAACATCG
1 ATGCCAATGTCCCAGACATGGTCTTACACGTAAACAAA-ATCG
* * ** *
49082790 ATGCCACTGTCCCAGACAGGGTCTTACACG-AAATTAGATACG
1 ATGCCAATGTCCCAGACATGGTCTTACACGTAAACAAAAT-CG
*
49082832 ATGCCAATGTTCCAGACATGGTCTTACACGTAAAACAAAAGTCG
1 ATGCCAATGTCCCAGACATGGTCTTACACGT-AAACAAAA-TCG
*
49082876 ATGCCAATGTCCCAGACGTGGTCTTACACG
1 ATGCCAATGTCCCAGACATGGTCTTACACG
49082906 ATATCACATA
Statistics
Matches: 96, Mismatches: 16, Indels: 7
0.81 0.13 0.06
Matches are distributed among these distances:
41 2 0.02
42 32 0.33
43 26 0.27
44 35 0.36
45 1 0.01
ACGTcount: A:0.31, C:0.26, G:0.19, T:0.23
Consensus pattern (42 bp):
ATGCCAATGTCCCAGACATGGTCTTACACGTAAACAAAATCG
Found at i:49082899 original size:86 final size:85
Alignment explanation
Indices: 49082742--49082906 Score: 235
Period size: 86 Copynumber: 1.9 Consensus size: 85
49082732 CAGAAAGCAT
* * *
49082742 ATACAATGCCAACGTCCCAGACATGGTCTTACATGTAATCAAACATCGATGCCACTGTCCCAGAC
1 ATACAATGCCAACGTCCCAGACATGGTCTTACACGTAAACAAACATCGATGCCAATGTCCCAGAC
49082807 AGGGTCTTACACGAAATTAG
66 AGGGTCTTACACGAAATTAG
* * *
49082827 ATACGATGCCAATGTTCCAGACATGGTCTTACACGTAAAACAAA-AGTCGATGCCAATGTCCCAG
1 ATACAATGCCAACGTCCCAGACATGGTCTTACACGT-AAACAAACA-TCGATGCCAATGTCCCAG
49082891 AC-GTGGTCTTACACGA
64 ACAG-GGTCTTACACGA
49082907 TATCACATAT
Statistics
Matches: 71, Mismatches: 6, Indels: 5
0.87 0.07 0.06
Matches are distributed among these distances:
85 34 0.48
86 37 0.52
ACGTcount: A:0.33, C:0.26, G:0.19, T:0.22
Consensus pattern (85 bp):
ATACAATGCCAACGTCCCAGACATGGTCTTACACGTAAACAAACATCGATGCCAATGTCCCAGAC
AGGGTCTTACACGAAATTAG
Found at i:49084240 original size:35 final size:35
Alignment explanation
Indices: 49084191--49084321 Score: 172
Period size: 35 Copynumber: 3.7 Consensus size: 35
49084181 TAGATGTTAC
* *
49084191 AGTATTGGTGTTGTGGCAGGAAGTTAAATGAATGA
1 AGTATTGATGTTGTGGCAGGATGTTAAATGAATGA
* *
49084226 AGTATTGATTTTGTGGCACGATGTTAAATGAATGA
1 AGTATTGATGTTGTGGCAGGATGTTAAATGAATGA
* * ** *
49084261 AGTATTGATGTTGAGGTAGGATGTTATTTGAAAGA
1 AGTATTGATGTTGTGGCAGGATGTTAAATGAATGA
*
49084296 AGTATCGATGTTGTGGCAGGATGTTA
1 AGTATTGATGTTGTGGCAGGATGTTA
49084322 TTTGAAAGAG
Statistics
Matches: 82, Mismatches: 14, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
35 82 1.00
ACGTcount: A:0.30, C:0.04, G:0.31, T:0.35
Consensus pattern (35 bp):
AGTATTGATGTTGTGGCAGGATGTTAAATGAATGA
Found at i:49084322 original size:35 final size:35
Alignment explanation
Indices: 49084191--49084345 Score: 168
Period size: 35 Copynumber: 4.5 Consensus size: 35
49084181 TAGATGTTAC
* * *
49084191 AGTATTGGTGTTGTGGCAGGAAGTTAAATGAATGA
1 AGTATTGATGTTGTGGCAGGATGTTAAATGAAAGA
* * *
49084226 AGTATTGATTTTGTGGCACGATGTTAAATGAATGA
1 AGTATTGATGTTGTGGCAGGATGTTAAATGAAAGA
* * **
49084261 AGTATTGATGTTGAGGTAGGATGTTATTTGAAAGA
1 AGTATTGATGTTGTGGCAGGATGTTAAATGAAAGA
* **
49084296 AGTATCGATGTTGTGGCAGGATGTTATTTGAAAG-
1 AGTATTGATGTTGTGGCAGGATGTTAAATGAAAGA
* *
49084330 AGGATTGGTGTTGTGG
1 AGTATTGATGTTGTGG
49084346 TGGGATTTTT
Statistics
Matches: 103, Mismatches: 17, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
34 13 0.13
35 90 0.87
ACGTcount: A:0.28, C:0.03, G:0.33, T:0.35
Consensus pattern (35 bp):
AGTATTGATGTTGTGGCAGGATGTTAAATGAAAGA
Found at i:49088446 original size:42 final size:42
Alignment explanation
Indices: 49088399--49088545 Score: 194
Period size: 42 Copynumber: 3.5 Consensus size: 42
49088389 AGTGATATAT
49088399 CAGGCTTATTGCCTAGCAGGCTTTGATGCCGATGTATGATAC
1 CAGGCTTATTGCCTAGCAGGCTTTGATGCCGATGTATGATAC
*
49088441 CAGGCTTATTGCCTAGCAGGCTTTGATGCC-AGTGTATGATAT
1 CAGGCTTATTGCCTAGCAGGCTTTGATGCCGA-TGTATGATAC
* *
49088483 CAAGCTTATTGCCTAGCAGGCTTT-ATGCCGGTGTATTGA-ATC
1 CAGGCTTATTGCCTAGCAGGCTTTGATGCCGATGTA-TGATA-C
* *
49088525 CA-GTTTATTACCTAGCAGGCT
1 CAGGCTTATTGCCTAGCAGGCT
49088546 CTGTGCCTGT
Statistics
Matches: 95, Mismatches: 6, Indels: 9
0.86 0.05 0.08
Matches are distributed among these distances:
41 28 0.29
42 67 0.71
ACGTcount: A:0.22, C:0.21, G:0.24, T:0.33
Consensus pattern (42 bp):
CAGGCTTATTGCCTAGCAGGCTTTGATGCCGATGTATGATAC
Found at i:49099578 original size:29 final size:29
Alignment explanation
Indices: 49099536--49099742 Score: 132
Period size: 29 Copynumber: 7.1 Consensus size: 29
49099526 TGCTAAACGG
* * *
49099536 TGGTCGTAATCATCCCTTTTCCTATTCGA
1 TGGTCGAAACCATCCCTTTTCATATTCGA
* *
49099565 TGGTCGAAACCATCCCTTTTCATCAATCGG
1 TGGTCGAAACCATCCCTTTTCAT-ATTCGA
** *
49099595 TGGTCGTCACCATCCCTTTTCAT-TATCTA
1 TGGTCGAAACCATCCCTTTTCATAT-TCGA
* * * *
49099624 TAGCCGAAGCTATCCCTTTTCATATTCGA
1 TGGTCGAAACCATCCCTTTTCATATTCGA
* * ** *
49099653 TAG-CCAAAGTTATCCCTTTTCATATTCAA
1 TGGTCGAAA-CCATCCCTTTTCATATTCGA
** *
49099682 TGGTCGTCACCATCCCTTTTCATAATCGA
1 TGGTCGAAACCATCCCTTTTCATATTCGA
* * * *
49099711 TAGT-TAAAGCTATCCCTTTTCATTAGTCGA
1 TGGTCGAAA-CCATCCCTTTTCA-TATTCGA
49099741 TG
1 TG
49099743 ATTGCTGATA
Statistics
Matches: 135, Mismatches: 36, Indels: 13
0.73 0.20 0.07
Matches are distributed among these distances:
28 4 0.03
29 96 0.71
30 35 0.26
ACGTcount: A:0.23, C:0.27, G:0.13, T:0.37
Consensus pattern (29 bp):
TGGTCGAAACCATCCCTTTTCATATTCGA
Found at i:49099607 original size:30 final size:29
Alignment explanation
Indices: 49099533--49099617 Score: 107
Period size: 30 Copynumber: 2.9 Consensus size: 29
49099523 ATGTGCTAAA
* * *
49099533 CGGTGGTCGTAATCATCCCTTTTCCTATT
1 CGGTGGTCGTAACCATCCCTTTTCATAAT
* *
49099562 CGATGGTCGAAACCATCCCTTTTCATCAAT
1 CGGTGGTCGTAACCATCCCTTTTCAT-AAT
*
49099592 CGGTGGTCGTCACCATCCCTTTTCAT
1 CGGTGGTCGTAACCATCCCTTTTCAT
49099618 TATCTATAGC
Statistics
Matches: 47, Mismatches: 8, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
29 22 0.47
30 25 0.53
ACGTcount: A:0.18, C:0.31, G:0.16, T:0.35
Consensus pattern (29 bp):
CGGTGGTCGTAACCATCCCTTTTCATAAT
Found at i:49099675 original size:58 final size:59
Alignment explanation
Indices: 49099606--49099735 Score: 149
Period size: 58 Copynumber: 2.2 Consensus size: 59
49099596 GGTCGTCACC
* * * *
49099606 ATCCCTTTTCATTA-TCTATAGCCG-AAGCTATCCCTTTTCATATTCGATAGCCAAAGTT
1 ATCCCTTTTCATTATTCAATAGCCGTAA-CCATCCCTTTTCATAATCGATAGCCAAAGCT
* * * **
49099664 ATCCCTTTTCA-TATTCAATGGTCGTCACCATCCCTTTTCATAATCGATAGTTAAAGCT
1 ATCCCTTTTCATTATTCAATAGCCGTAACCATCCCTTTTCATAATCGATAGCCAAAGCT
49099722 ATCCCTTTTCATTA
1 ATCCCTTTTCATTA
49099736 GTCGATGATT
Statistics
Matches: 60, Mismatches: 9, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
57 2 0.03
58 55 0.92
59 3 0.05
ACGTcount: A:0.25, C:0.26, G:0.09, T:0.39
Consensus pattern (59 bp):
ATCCCTTTTCATTATTCAATAGCCGTAACCATCCCTTTTCATAATCGATAGCCAAAGCT
Found at i:49101074 original size:26 final size:26
Alignment explanation
Indices: 49101045--49101157 Score: 84
Period size: 26 Copynumber: 4.3 Consensus size: 26
49101035 ATAGTTTACC
49101045 AAATTACTAAAATACCCCC-AGTTGTA
1 AAATTACTAAAATACCCCCGA-TTGTA
* * * * *
49101071 AAATTACCAAAGTACCCCTGGTTTATA
1 AAATTACTAAAATACCCC-CGATTGTA
* **
49101098 AAATTACTGAAATACCATCGATTGTA
1 AAATTACTAAAATACCCCCGATTGTA
* * *
49101124 AAATTACTGAAATGCCCTCGATTTGTA
1 AAATTACTAAAATACCCCCGA-TTGTA
*
49101151 GAATTAC
1 AAATTAC
49101158 CATTTTAGCC
Statistics
Matches: 68, Mismatches: 16, Indels: 5
0.76 0.18 0.06
Matches are distributed among these distances:
26 40 0.59
27 28 0.41
ACGTcount: A:0.39, C:0.19, G:0.12, T:0.30
Consensus pattern (26 bp):
AAATTACTAAAATACCCCCGATTGTA
Found at i:49101157 original size:27 final size:26
Alignment explanation
Indices: 49101096--49101157 Score: 88
Period size: 26 Copynumber: 2.3 Consensus size: 26
49101086 CCCTGGTTTA
49101096 TAAAATTACTGAAATACCATCGATTG
1 TAAAATTACTGAAATACCATCGATTG
* *
49101122 TAAAATTACTGAAATGCCCTCGATTTG
1 TAAAATTACTGAAATACCATCGA-TTG
*
49101149 TAGAATTAC
1 TAAAATTAC
49101158 CATTTTAGCC
Statistics
Matches: 32, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
26 21 0.66
27 11 0.34
ACGTcount: A:0.39, C:0.16, G:0.13, T:0.32
Consensus pattern (26 bp):
TAAAATTACTGAAATACCATCGATTG
Found at i:49101169 original size:27 final size:27
Alignment explanation
Indices: 49101138--49101740 Score: 649
Period size: 27 Copynumber: 22.3 Consensus size: 27
49101128 TACTGAAATG
* *
49101138 CCCTCGATTTGTAGAATTACCATTTTA
1 CCCTCGATTTATAGAATTACCGTTTTA
*
49101165 GCCTCGATTTATAGAATTACCGTTTTA
1 CCCTCGATTTATAGAATTACCGTTTTA
* *
49101192 CCCTCGATTTGTAAAATTACCGTTTTA
1 CCCTCGATTTATAGAATTACCGTTTTA
*
49101219 CCCTCGATTTACAGAATTACCGTTTTA
1 CCCTCGATTTATAGAATTACCGTTTTA
* * *
49101246 CCCTCAACTTACAGAATTACCGTTTTA
1 CCCTCGATTTATAGAATTACCGTTTTA
*
49101273 CCCTCGATTTACAGAATTACCGTTTTA
1 CCCTCGATTTATAGAATTACCGTTTTA
* **
49101300 CCCTCGATTTACAGAATTACTATTTTA
1 CCCTCGATTTATAGAATTACCGTTTTA
* *
49101327 CCCTCGATTTAAAGAATTACCATTTTA
1 CCCTCGATTTATAGAATTACCGTTTTA
**
49101354 CCCTC-AGTTTATAGAATTACTATTTTA
1 CCCTCGA-TTTATAGAATTACCGTTTTA
* *
49101381 CCCTCGATTTACAGAATTACTGTTTTA
1 CCCTCGATTTATAGAATTACCGTTTTA
*
49101408 CCCTC-AGTTTATAGAATTACTGTTTTA
1 CCCTCGA-TTTATAGAATTACCGTTTTA
*
49101435 CCCTCGATTTATAGAATTACCATTTTA
1 CCCTCGATTTATAGAATTACCGTTTTA
* * *
49101462 CCCTCGATTTGTAAAATTATCGTTTTA
1 CCCTCGATTTATAGAATTACCGTTTTA
*
49101489 CCCTCGATTTATAGAATTACCGTTATA
1 CCCTCGATTTATAGAATTACCGTTTTA
* * **
49101516 CCCTC-AGTTTACAAAATTACTATTTTA
1 CCCTCGA-TTTATAGAATTACCGTTTTA
49101543 CCCTCGATTTATAGAATTACCGTTTTA
1 CCCTCGATTTATAGAATTACCGTTTTA
* *
49101570 CCCTC-AGTTTACAGAATTACTGTTTTA
1 CCCTCGA-TTTATAGAATTACCGTTTTA
* * *
49101597 CCCTCAATTTACAGAATTACTGTTTTA
1 CCCTCGATTTATAGAATTACCGTTTTA
* * * * *
49101624 CCCTCGTTTTGTAAAAGTATCGTTTTA
1 CCCTCGATTTATAGAATTACCGTTTTA
** * * * *
49101651 CCCTTTATTTACAAAATTACTGGTTTA
1 CCCTCGATTTATAGAATTACCGTTTTA
* * * *
49101678 CCCTC-AGTTTACAAAATTATCATTTTA
1 CCCTCGA-TTTATAGAATTACCGTTTTA
* * *
49101705 CCCTTGATTTACAAAATTACCGTTTTA
1 CCCTCGATTTATAGAATTACCGTTTTA
*
49101732 CCCTTGATT
1 CCCTCGATT
49101741 GTGAAATTAC
Statistics
Matches: 498, Mismatches: 68, Indels: 20
0.85 0.12 0.03
Matches are distributed among these distances:
26 5 0.01
27 488 0.98
28 5 0.01
ACGTcount: A:0.28, C:0.22, G:0.09, T:0.41
Consensus pattern (27 bp):
CCCTCGATTTATAGAATTACCGTTTTA
Found at i:49101808 original size:54 final size:54
Alignment explanation
Indices: 49101745--49101939 Score: 223
Period size: 54 Copynumber: 3.6 Consensus size: 54
49101735 TTGATTGTGA
* * * *
49101745 AATTACTAAAATACCCCTGTAGGGTAGAATTTCTGAAATACCCCTATAGGGTAG
1 AATTACTAAAATACCCTTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAG
* * *
49101799 AATTACTAAAATACCCTTATAGGATAGAATTACCAAAATACCCCTGTAGGGTAG
1 AATTACTAAAATACCCTTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAG
* * * *
49101853 AATTATCGAAAA-ACCCTTGTAGGGTAGAAATACCGAAATACCTCTGTAAGGTAG
1 AATTA-CTAAAATACCCTTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAG
** * * *
49101907 AATTACCGAGATA-CCTTGTGGGGTAAAATTACC
1 AATTACTAAAATACCCTTGTAGGGTAGAATTACC
49101940 ATTTTGCCCC
Statistics
Matches: 119, Mismatches: 20, Indels: 5
0.83 0.14 0.03
Matches are distributed among these distances:
53 20 0.17
54 94 0.79
55 5 0.04
ACGTcount: A:0.37, C:0.18, G:0.18, T:0.26
Consensus pattern (54 bp):
AATTACTAAAATACCCTTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAG
Done.